Datasets:

electricsheepafrica
/

africa-synth-parasitology-ntd-lab-all

id int64	age int64	sex string	under_15 int64	facility_level string	location string	target_disease string	true_infected int64	specimen_type string	microscopy_done int64	kato_katz_done int64	concentration_done int64	urine_filtration_done int64	serology_done int64	result string	egg_count_epg int64	intensity string	clinical_diagnosis_only int64	parasite_identified int64	mda_received int64	treatment_given int64	treatment_type string	specimen_adequate int64	eqa_participating int64	slides_read_duplicate int64	tat_hours int64	survey_mapping int64	school_based int64	year int64
1	19	male	0	survey	rural	sth_ascaris	0	stool	0	0	0	0	0	not_done	0	na	1	0	0	0	none	1	0	0	0	1	0	2,021
2	7	female	1	hospital	remote	filariasis	0	blood	0	0	0	0	0	not_done	0	na	1	0	1	0	none	1	1	0	0	0	1	2,022
3	80	female	0	health_centre	rural	schisto_mansoni	1	stool	1	0	0	0	0	negative	0	na	0	0	1	0	none	0	0	0	26	0	0	2,022
4	17	male	0	hospital	remote	filariasis	0	skin_snip	1	0	0	0	0	negative	0	na	0	0	0	0	none	1	0	0	26	0	0	2,022
5	26	male	0	hospital	rural	sth_hookworm	0	stool	0	0	1	0	0	not_done	0	na	1	0	0	0	none	1	0	0	0	0	0	2,022
6	11	female	1	health_centre	urban	sth_ascaris	0	stool	1	1	0	0	0	negative	0	na	0	0	1	0	none	1	0	0	11	0	1	2,023
7	20	female	0	health_centre	remote	onchocerciasis	0	blood	1	0	0	0	0	negative	0	na	0	0	1	0	none	1	0	0	11	0	0	2,023
8	9	male	1	community	rural	filariasis	1	blood	1	0	0	0	0	positive	0	na	0	1	1	1	albendazole	0	0	0	32	0	1	2,023
9	6	female	1	hospital	rural	schisto_mansoni	0	stool	0	0	0	0	0	not_done	0	na	1	0	1	0	none	0	0	0	0	0	1	2,022
10	3	female	1	health_centre	rural	onchocerciasis	0	blood	0	0	0	0	0	not_done	0	na	1	0	0	0	none	1	0	0	0	0	0	2,021
11	31	male	0	dispensary	peri_urban	other_ntd	0	stool	0	0	0	0	0	not_done	0	na	1	0	0	0	none	1	0	0	0	0	0	2,023
12	10	male	1	hospital	remote	sth_hookworm	0	stool	1	1	0	0	0	negative	0	na	0	0	0	0	none	1	0	0	19	0	0	2,020
13	19	male	0	health_centre	rural	sth_ascaris	0	stool	0	0	0	0	0	not_done	0	na	1	0	0	0	none	1	0	0	0	0	0	2,023
14	10	male	1	dispensary	rural	other_ntd	0	skin_snip	1	0	0	0	0	negative	0	na	0	0	1	0	none	1	0	0	15	0	0	2,021
15	9	male	1	health_centre	remote	strongyloides	0	stool	0	0	0	0	0	not_done	0	na	1	0	1	0	none	1	0	0	0	0	0	2,021
16	80	male	0	community	remote	sth_ascaris	1	stool	0	0	0	0	0	not_done	0	na	1	0	0	0	none	1	0	0	0	0	0	2,020
17	4	male	1	hospital	peri_urban	sth_ascaris	0	stool	0	0	0	0	0	not_done	0	na	1	0	0	0	none	1	0	0	0	0	1	2,020
18	52	male	0	hospital	rural	schisto_haematobium	1	urine	0	0	0	1	0	not_done	0	na	1	0	0	0	none	0	0	0	0	0	0	2,023
19	18	female	0	survey	urban	schisto_haematobium	0	urine	0	0	0	0	0	not_done	0	na	1	0	1	0	none	1	0	0	0	1	0	2,021
20	59	male	0	dispensary	peri_urban	schisto_mansoni	0	stool	0	0	0	0	0	not_done	0	na	1	0	0	0	none	1	0	0	0	0	0	2,022
21	15	male	0	community	peri_urban	filariasis	0	blood	0	0	0	0	0	not_done	0	na	1	0	1	0	none	0	0	0	0	0	0	2,023
22	9	female	1	survey	remote	other_ntd	0	blood	1	0	0	0	0	negative	0	na	0	0	0	0	none	1	0	0	29	1	0	2,022
23	9	male	1	health_centre	urban	filariasis	0	skin_snip	0	0	0	0	0	not_done	0	na	1	0	0	0	none	1	0	0	0	0	0	2,020
24	20	female	0	dispensary	rural	onchocerciasis	0	skin_snip	0	0	0	0	0	not_done	0	na	1	0	0	0	none	0	0	0	0	0	0	2,019
25	80	female	0	health_centre	rural	filariasis	1	blood	0	0	0	0	0	not_done	0	na	1	0	1	0	none	1	0	0	0	0	0	2,023
26	4	female	1	survey	peri_urban	strongyloides	1	stool	0	0	0	0	0	not_done	0	na	1	0	1	0	none	1	0	0	0	1	0	2,020
27	10	female	1	hospital	urban	sth_ascaris	0	stool	0	0	0	0	0	not_done	0	na	1	0	0	0	none	0	0	0	0	0	0	2,019
28	8	male	1	dispensary	remote	filariasis	0	blood	0	0	0	0	0	not_done	0	na	1	0	0	0	none	0	0	0	0	0	1	2,022
29	21	female	0	community	peri_urban	sth_ascaris	1	stool	0	0	0	0	0	not_done	0	na	1	0	1	0	none	0	0	0	0	0	0	2,022
30	35	female	0	survey	urban	schisto_haematobium	0	urine	0	0	0	0	0	not_done	0	na	1	0	1	0	none	1	0	0	0	1	0	2,022
31	19	male	0	health_centre	rural	sth_trichuris	1	stool	1	0	0	0	0	negative	0	na	0	0	0	0	none	1	0	0	40	0	0	2,021
32	15	male	0	dispensary	remote	other_ntd	0	blood	0	0	0	0	0	not_done	0	na	1	0	0	0	none	1	0	0	0	0	0	2,019
33	35	male	0	health_centre	peri_urban	sth_hookworm	1	stool	0	1	0	0	0	positive	84	light	0	1	1	1	combination	0	0	0	18	0	0	2,022
34	4	male	1	community	urban	sth_hookworm	0	stool	1	0	0	0	0	negative	0	na	0	0	0	0	none	1	0	0	49	0	0	2,021
35	52	male	0	health_centre	remote	sth_ascaris	1	stool	1	0	0	0	0	positive	0	na	0	1	0	1	praziquantel	1	0	0	14	0	0	2,022
36	25	female	0	dispensary	remote	other_ntd	0	skin_snip	0	0	0	0	0	not_done	0	na	1	0	0	0	none	1	0	0	0	0	0	2,021
37	19	female	0	health_centre	peri_urban	sth_hookworm	1	stool	0	0	0	0	1	not_done	0	na	1	0	1	0	none	0	0	0	0	0	0	2,023
38	43	male	0	survey	remote	onchocerciasis	0	skin_snip	0	0	0	0	0	not_done	0	na	1	0	1	0	none	1	0	0	0	1	0	2,023
39	5	male	1	community	remote	sth_trichuris	1	stool	1	0	0	0	0	negative	0	na	0	0	1	0	none	0	0	0	17	0	0	2,023
40	21	male	0	hospital	urban	filariasis	0	skin_snip	0	0	0	0	0	not_done	0	na	1	0	1	0	none	1	0	0	0	0	0	2,023
41	15	female	0	community	urban	schisto_mansoni	0	stool	0	0	0	0	0	not_done	0	na	1	0	0	0	none	1	0	0	0	0	0	2,023
42	6	male	1	health_centre	remote	strongyloides	0	stool	1	0	0	0	0	negative	0	na	0	0	0	0	none	1	0	0	21	0	0	2,019
43	23	male	0	dispensary	rural	sth_trichuris	0	stool	0	0	0	0	0	not_done	0	na	1	0	1	0	none	1	0	0	0	0	0	2,022
44	1	female	1	community	peri_urban	sth_hookworm	1	stool	1	0	0	0	0	negative	0	na	0	0	1	0	none	1	0	0	19	0	1	2,022
45	49	female	0	survey	rural	schisto_mansoni	1	stool	0	1	1	0	0	positive	760	heavy	0	1	1	1	mebendazole	1	0	0	15	1	0	2,021
46	12	male	1	hospital	urban	other_ntd	1	blood	1	0	0	0	0	negative	0	na	0	0	0	0	none	1	0	0	11	0	0	2,020
47	18	female	0	hospital	rural	onchocerciasis	0	blood	1	0	0	0	1	negative	0	na	0	0	1	0	none	1	0	0	43	0	0	2,022
48	3	male	1	survey	rural	sth_hookworm	0	stool	0	0	0	0	0	not_done	0	na	1	0	0	0	none	1	0	0	0	1	0	2,023
49	21	male	0	dispensary	peri_urban	sth_ascaris	1	stool	0	1	0	0	0	negative	0	na	0	0	1	0	none	0	0	0	24	0	0	2,020
50	6	male	1	dispensary	remote	sth_ascaris	1	stool	0	0	0	0	0	not_done	0	na	1	0	0	0	none	1	0	0	0	0	1	2,022
51	22	female	0	survey	urban	schisto_haematobium	1	urine	0	0	0	0	0	not_done	0	na	1	0	1	0	none	1	0	0	0	1	0	2,022
52	13	female	1	dispensary	rural	sth_ascaris	0	stool	0	0	0	0	0	not_done	0	na	1	0	0	0	none	1	0	0	0	0	1	2,020
53	5	male	1	community	remote	schisto_mansoni	0	stool	0	0	0	0	0	not_done	0	na	1	0	0	0	none	0	0	0	0	0	1	2,022
54	11	female	1	dispensary	remote	other_ntd	0	stool	0	0	0	0	0	not_done	0	na	1	0	0	0	none	1	0	0	0	0	0	2,020
55	19	female	0	health_centre	remote	sth_hookworm	1	stool	0	0	0	0	0	not_done	0	na	1	0	0	0	none	1	0	0	0	0	0	2,019
56	6	female	1	community	rural	sth_ascaris	1	stool	0	0	0	0	0	not_done	0	na	1	0	0	0	none	0	1	0	0	0	1	2,021
57	10	male	1	survey	rural	schisto_haematobium	1	urine	1	0	0	0	0	negative	0	na	0	0	1	0	none	1	0	0	22	1	1	2,023
58	77	female	0	health_centre	peri_urban	strongyloides	0	stool	1	0	0	0	0	negative	0	na	0	0	1	0	none	1	0	0	20	0	0	2,023
59	16	female	0	dispensary	rural	schisto_haematobium	0	urine	0	0	0	0	0	not_done	0	na	1	0	0	0	none	0	0	0	0	0	0	2,022
60	5	male	1	hospital	urban	other_ntd	0	blood	1	0	0	0	0	negative	0	na	0	0	0	0	none	0	0	0	30	0	0	2,021
61	8	male	1	survey	rural	onchocerciasis	0	blood	0	0	0	0	0	not_done	0	na	1	0	1	0	none	0	0	0	0	1	1	2,021
62	15	male	0	community	rural	other_ntd	0	urine	0	0	0	0	0	not_done	0	na	1	0	0	0	none	1	0	0	0	0	0	2,022
63	20	male	0	dispensary	remote	onchocerciasis	0	blood	0	0	0	0	0	not_done	0	na	1	0	1	0	none	0	0	0	0	0	0	2,022
64	27	female	0	survey	rural	filariasis	0	blood	0	0	0	0	0	not_done	0	na	1	0	0	0	none	1	0	0	0	1	0	2,019
65	5	male	1	survey	remote	sth_hookworm	0	stool	1	0	0	0	0	negative	0	na	0	0	1	0	none	1	0	0	8	1	1	2,022
66	34	female	0	dispensary	rural	sth_ascaris	0	stool	0	0	0	0	0	not_done	0	na	1	0	1	0	none	1	0	0	0	0	0	2,022
67	8	male	1	survey	remote	strongyloides	0	stool	0	0	0	0	0	not_done	0	na	1	0	1	0	none	1	0	0	0	1	1	2,022
68	13	male	1	survey	remote	sth_hookworm	1	stool	0	0	0	0	0	not_done	0	na	1	0	1	0	none	1	0	0	0	1	1	2,020
69	43	female	0	survey	remote	sth_ascaris	1	stool	0	0	0	0	0	not_done	0	na	1	0	0	0	none	1	0	0	0	1	0	2,022
70	15	female	0	community	remote	other_ntd	0	stool	0	0	0	0	0	not_done	0	na	1	0	1	0	none	1	0	0	0	0	0	2,023
71	5	female	1	dispensary	peri_urban	onchocerciasis	0	blood	0	0	0	0	0	not_done	0	na	1	0	1	0	none	1	0	0	0	0	1	2,019
72	15	male	0	survey	urban	filariasis	0	blood	1	0	0	0	0	negative	0	na	0	0	0	0	none	1	0	0	24	1	0	2,023
73	13	female	1	dispensary	rural	sth_hookworm	1	stool	0	0	0	0	0	not_done	0	na	1	0	0	0	none	1	0	0	0	0	1	2,022
74	26	male	0	survey	remote	other_ntd	0	stool	0	0	0	0	0	not_done	0	na	1	0	0	0	none	0	1	0	0	1	0	2,019
75	5	male	1	health_centre	rural	onchocerciasis	0	blood	1	0	0	0	0	negative	0	na	0	0	0	0	none	1	1	1	12	0	0	2,022
76	24	female	0	dispensary	rural	other_ntd	1	stool	0	0	0	0	0	not_done	0	na	1	0	1	0	none	1	0	0	0	0	0	2,020
77	8	male	1	dispensary	urban	schisto_mansoni	0	stool	0	0	0	0	0	not_done	0	na	1	0	1	0	none	1	0	0	0	0	0	2,023
78	42	female	0	survey	urban	schisto_mansoni	0	stool	0	0	0	0	0	not_done	0	na	1	0	0	0	none	0	0	0	0	1	0	2,021
79	7	male	1	health_centre	peri_urban	sth_ascaris	0	stool	0	0	0	0	0	not_done	0	na	1	0	0	0	none	0	0	0	0	0	0	2,021
80	50	male	0	community	rural	sth_trichuris	1	stool	0	1	0	0	0	positive	116	moderate	0	1	0	1	dec	0	0	0	32	0	0	2,019
81	47	male	0	survey	rural	sth_ascaris	1	stool	0	0	1	0	0	not_done	0	na	1	0	0	0	none	1	1	0	0	1	0	2,023
82	5	female	1	dispensary	rural	sth_trichuris	1	stool	0	0	0	0	0	not_done	0	na	1	0	0	0	none	1	0	0	0	0	0	2,021
83	1	female	1	dispensary	rural	other_ntd	0	blood	0	0	0	0	0	not_done	0	na	1	0	0	0	none	0	0	0	0	0	0	2,023
84	12	female	1	dispensary	rural	sth_hookworm	0	stool	0	0	1	0	0	not_done	0	na	1	0	1	0	none	1	0	0	0	0	0	2,019
85	30	male	0	survey	remote	sth_ascaris	0	stool	0	0	0	0	0	not_done	0	na	1	0	0	0	none	0	0	0	0	1	0	2,019
86	8	male	1	survey	urban	other_ntd	0	stool	1	0	0	0	0	negative	0	na	0	0	1	0	none	1	1	0	36	1	1	2,020
87	6	male	1	survey	remote	strongyloides	0	stool	0	0	0	0	0	not_done	0	na	1	0	0	0	none	0	0	0	0	1	0	2,021
88	11	male	1	dispensary	rural	sth_ascaris	1	stool	0	0	0	0	0	not_done	0	na	1	0	1	0	none	1	0	0	0	0	1	2,022
89	23	female	0	health_centre	urban	sth_hookworm	1	stool	1	0	0	0	0	positive	0	na	0	1	0	1	combination	0	0	0	73	0	0	2,021
90	32	male	0	survey	rural	sth_hookworm	1	stool	0	0	0	0	0	not_done	0	na	1	0	1	0	none	0	0	0	0	1	0	2,019
91	4	female	1	dispensary	rural	other_ntd	0	blood	0	0	0	0	0	not_done	0	na	1	0	1	0	none	1	1	0	0	0	0	2,021
92	11	male	1	hospital	remote	filariasis	0	blood	0	0	0	0	0	not_done	0	na	1	0	1	0	none	1	0	0	0	0	0	2,021
93	21	female	0	dispensary	remote	schisto_mansoni	1	stool	0	0	0	0	0	not_done	0	na	1	0	1	0	none	1	0	0	0	0	0	2,020
94	58	male	0	dispensary	remote	onchocerciasis	0	blood	0	0	0	0	0	not_done	0	na	1	0	1	0	none	1	0	0	0	0	0	2,022
95	6	male	1	dispensary	remote	onchocerciasis	0	blood	0	0	0	0	0	not_done	0	na	1	0	1	0	none	1	0	0	0	0	1	2,023
96	74	male	0	health_centre	rural	sth_trichuris	1	stool	1	0	0	0	0	negative	0	na	0	0	0	0	none	1	0	0	19	0	0	2,021
97	39	male	0	dispensary	rural	schisto_mansoni	0	stool	0	0	0	0	0	not_done	0	na	1	0	0	0	none	0	0	0	0	0	0	2,021
98	18	male	0	community	remote	sth_trichuris	0	stool	0	0	0	0	0	not_done	0	na	1	0	1	0	none	0	0	0	0	0	0	2,020
99	27	female	0	health_centre	remote	sth_ascaris	0	stool	0	0	0	0	0	not_done	0	na	1	0	1	0	none	1	0	0	0	0	0	2,023
100	19	male	0	survey	peri_urban	sth_ascaris	0	stool	0	1	0	0	0	negative	0	na	0	0	1	0	none	0	0	0	38	1	0	2,020

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⚠️ Synthetic dataset — Parameterized from published SSA literature, not real observations. Not suitable for empirical analysis or policy inference.

Parasitology & NTD Lab

Abstract

Synthetic dataset modeling parasitology and NTD laboratory diagnostics across three SSA scenarios. Captures microscopy, Kato-Katz, POC-CCA, PCR availability, STH/schistosomiasis/filariasis prevalence, egg counts, MDA coverage, and treatment. Parameterized from WHO NTD data and SSA diagnostic research.

Parameterization Evidence

Parameter	Value	Source	Year
STH at risk SSA	300M+	WHO NTD	2023
Schistosomiasis at risk	200M+ in SSA	WHO	2023
Kato-Katz sensitivity	60-70% single slide	Knopp et al. Acta Trop	2012
MDA coverage	40-70% endemic areas	Hotez et al. PLoS NTD	2014

Validation

Usage

from datasets import load_dataset
ds = load_dataset("electricsheepafrica/parasitology-ntd-lab", name="district_parasitology")
df = ds['train'].to_pandas()

References

WHO (2023). Neglected tropical diseases
Knopp S et al. (2012). STH/schistosomiasis diagnosis. Acta Trop. DOI: 10.1016/j.actatropica.2011.10.001
Hotez PJ et al. (2014). NTDs in SSA. PLoS NTD. DOI: 10.1371/journal.pntd.0002865

License

CC-BY-4.0

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