Datasets:

electricsheepafrica
/

africa-synth-avian-influenza-surveillance-all

id int64	event_type string	residence string	production_system string	district_population int64	poultry_density int64	proximity_wetland_km float64	proximity_market_km float64	flock_size int64	mortality_count int64	mortality_rate float64	sudden_onset int64	detected int64	days_to_detection int64	reported_to_authority int64	lab_samples_collected int64	lab_confirmed_hpai int64	subtype_identified string	culling_performed int64	birds_culled int64	biosecurity_score float64	wild_bird_monitoring float64	one_health_coordination float64	human_exposure int64	human_ili_case int64	human_sample_tested int64	economic_loss_usd float64	year int64
1	market_surveillance	peri_urban	live_bird_market	70,331	1,049	21.8	11.3	388	79	0.2	0	0	0	0	0	0	not_tested	0	0	0.2	0.19	0.18	0	0	0	825	2,023
2	poultry_mortality	rural	live_bird_market	30,934	3,772	6.8	0.6	695	253	0.36	1	1	4	0	0	0	not_tested	0	0	0.2	0.22	0.39	0	0	0	2,655	2,021
3	market_surveillance	rural	backyard	45,608	10,040	2.5	2.8	52	25	0.48	1	1	1	0	0	0	not_tested	0	0	0.42	0	0.26	0	0	0	218	2,022
4	poultry_mortality	urban	backyard	66,931	4,290	30.4	2.7	23	5	0.22	1	1	24	0	0	0	not_tested	0	0	0.24	0.15	0.36	0	0	0	46	2,021
5	poultry_mortality	rural	backyard	16,787	1,735	33.8	8.1	24	5	0.21	1	1	13	1	0	0	not_tested	0	0	0.31	0.1	0.33	0	0	0	43	2,022
6	poultry_mortality	peri_urban	backyard	90,413	9,752	4.4	0.4	19	1	0.05	0	0	0	0	0	0	not_tested	0	0	0.18	0.18	0.4	0	0	0	7	2,023
7	wild_bird_mortality	rural	backyard	24,559	3,586	9.2	0.2	117	51	0.44	1	0	0	0	0	0	not_tested	0	0	0.51	0.16	0.42	0	0	0	573	2,019
8	wild_bird_mortality	peri_urban	live_bird_market	66,153	2,428	5.3	2.4	441	112	0.25	1	0	0	0	0	0	not_tested	0	0	0.29	0.18	0.46	0	0	0	1,114	2,021
9	poultry_mortality	rural	backyard	19,186	1,673	2.1	8.4	43	13	0.3	1	1	6	1	0	0	not_tested	0	0	0.05	0.15	0.2	0	0	0	107	2,023
10	market_surveillance	rural	backyard	29,915	3,847	13	10.3	145	40	0.28	1	1	9	0	0	0	not_tested	0	0	0.53	0.06	0.27	0	0	0	288	2,019
11	poultry_mortality	rural	live_bird_market	11,028	4,389	37.1	6.6	2,932	390	0.13	0	1	14	0	0	0	not_tested	0	0	0.52	0.44	0.16	0	0	0	3,256	2,023
12	poultry_mortality	urban	live_bird_market	51,921	3,700	3	4.1	413	119	0.29	1	1	2	0	0	0	not_tested	0	0	0.21	0.18	0.29	0	0	0	624	2,021
13	poultry_mortality	peri_urban	semi_commercial	20,520	12,966	0.8	21.4	123	74	0.6	1	0	0	0	0	0	not_tested	0	0	0.29	0.12	0.32	0	0	0	793	2,021
14	wild_bird_mortality	peri_urban	backyard	13,941	6,500	1.7	2.3	99	31	0.31	1	0	0	0	0	0	not_tested	0	0	0.51	0.19	0.4	0	0	0	242	2,021
15	market_surveillance	peri_urban	commercial	35,676	12,761	1.4	19.7	897	110	0.12	0	0	0	0	0	0	not_tested	0	0	0.18	0.15	0.15	0	0	0	424	2,020
16	wild_bird_mortality	rural	backyard	48,014	5,296	34.1	7.6	9	4	0.44	1	0	0	0	0	0	not_tested	0	0	0.33	0.18	0.2	0	0	0	23	2,020
17	routine_sampling	peri_urban	backyard	97,295	2,758	65.2	17.3	98	21	0.21	1	0	0	0	0	0	not_tested	0	0	0.25	0.16	0.46	0	0	0	219	2,022
18	human_ili	peri_urban	live_bird_market	47,211	1,614	6.4	11.4	876	218	0.25	1	0	0	0	0	0	not_tested	0	0	0.4	0.11	0.36	1	1	1	755	2,023
19	poultry_mortality	rural	backyard	62,711	3,980	33.3	18	144	40	0.28	1	1	15	1	1	0	negative	0	0	0.13	0.19	0.18	0	0	0	135	2,023
20	poultry_mortality	urban	backyard	21,052	2,962	13.2	27.1	65	26	0.4	1	0	0	0	0	0	not_tested	0	0	0.35	0.14	0.34	0	0	0	189	2,020
21	poultry_mortality	peri_urban	backyard	48,848	4,897	17.6	8.7	14	0	0	0	1	6	0	0	0	not_tested	0	0	0.25	0.12	0.32	0	0	0	0	2,022
22	human_ili	rural	backyard	45,728	15,736	2.8	8.3	47	5	0.11	0	1	5	1	0	0	not_tested	0	0	0.26	0	0.12	1	0	0	22	2,020
23	poultry_mortality	rural	wild	51,925	3,195	28.9	9.1	394	74	0.19	0	0	0	0	0	0	not_tested	0	0	0.5	0.05	0.19	0	0	0	882	2,021
24	poultry_mortality	urban	commercial	46,703	17,482	3.4	7.9	349	98	0.28	1	1	8	0	0	0	not_tested	0	0	0.33	0.13	0.27	0	0	0	967	2,021
25	human_ili	peri_urban	live_bird_market	55,857	6,338	16	22.9	391	103	0.26	1	0	0	0	0	0	not_tested	0	0	0.34	0.16	0.21	1	0	0	487	2,023
26	human_ili	peri_urban	semi_commercial	38,401	6,166	24.7	6.5	156	65	0.42	1	0	0	0	0	0	not_tested	0	0	0.2	0.17	0.49	1	0	0	364	2,023
27	poultry_mortality	urban	backyard	31,022	3,296	41.4	32.4	12	3	0.25	1	0	0	0	0	0	not_tested	0	0	0.36	0.05	0.33	0	0	0	28	2,023
28	market_surveillance	rural	backyard	27,674	15,964	16.8	0.1	62	15	0.24	1	0	0	0	0	0	not_tested	0	0	0.49	0.4	0.25	0	0	0	125	2,021
29	routine_sampling	peri_urban	backyard	54,794	1,512	22.6	7.5	44	21	0.48	1	0	0	0	0	0	not_tested	0	0	0.28	0.32	0.17	0	0	0	101	2,022
30	wild_bird_mortality	peri_urban	backyard	14,493	4,930	21.5	9.3	46	3	0.07	0	1	4	1	0	0	not_tested	0	0	0.35	0.19	0.35	0	0	0	30	2,022
31	routine_sampling	rural	live_bird_market	29,617	3,529	10.8	5.1	1,657	265	0.16	0	1	1	0	0	0	not_tested	0	0	0.28	0.26	0.27	0	0	0	1,061	2,019
32	market_surveillance	peri_urban	backyard	35,021	8,393	0.1	0.9	21	9	0.43	1	0	0	0	0	0	not_tested	0	0	0.16	0.04	0.35	0	0	0	39	2,020
33	routine_sampling	urban	backyard	64,915	1,368	15	0.5	129	17	0.13	0	0	0	0	0	0	not_tested	0	0	0.19	0.15	0.26	0	0	0	121	2,023
34	poultry_mortality	rural	backyard	58,712	7,124	10.3	4	90	45	0.5	1	0	0	0	0	0	not_tested	0	0	0.51	0.29	0.33	0	0	0	376	2,020
35	market_surveillance	peri_urban	semi_commercial	18,307	4,799	0.5	15.6	504	153	0.3	1	0	0	0	0	0	not_tested	0	0	0.36	0.19	0.09	0	0	0	484	2,020
36	routine_sampling	peri_urban	semi_commercial	20,877	6,587	17.6	2.3	1,205	329	0.27	1	1	15	1	0	0	not_tested	0	0	0.33	0.04	0.24	0	0	0	1,578	2,023
37	poultry_mortality	rural	commercial	40,704	5,125	16.9	17.5	58	33	0.57	1	1	9	0	0	0	not_tested	0	0	0.26	0.34	0.3	0	0	0	313	2,021
38	poultry_mortality	rural	semi_commercial	26,167	10,855	52.4	13.8	1,034	285	0.28	1	0	0	0	0	0	not_tested	0	0	0.18	0.01	0.29	0	0	0	3,115	2,020
39	poultry_mortality	rural	backyard	38,897	6,249	5.1	13.5	52	6	0.12	0	1	8	0	0	0	not_tested	0	0	0	0	0.2	0	0	0	47	2,021
40	poultry_mortality	rural	semi_commercial	23,842	7,334	13.2	6.1	542	182	0.34	1	1	27	1	0	0	not_tested	0	0	0.37	0.09	0.42	0	0	0	1,940	2,021
41	human_ili	peri_urban	backyard	33,053	2,498	38.2	16.3	43	15	0.35	1	0	0	0	0	0	not_tested	0	0	0.44	0.31	0.34	1	0	0	73	2,019
42	poultry_mortality	rural	backyard	53,696	13,061	6.5	3.2	65	28	0.43	1	0	0	0	0	0	not_tested	0	0	0.3	0.19	0.49	0	0	0	317	2,022
43	poultry_mortality	rural	backyard	25,624	10,474	2	1.7	45	18	0.4	1	0	0	0	0	0	not_tested	0	0	0.35	0.2	0.12	0	0	0	83	2,023
44	poultry_mortality	peri_urban	live_bird_market	33,358	3,398	2.3	4.2	2,100	888	0.42	1	0	0	0	0	0	not_tested	0	0	0.29	0.08	0.25	0	0	0	6,181	2,019
45	wild_bird_mortality	rural	commercial	50,208	1,861	3.7	9.9	133	11	0.08	0	0	0	0	0	0	not_tested	0	0	0.34	0.19	0.37	0	0	0	102	2,022
46	poultry_mortality	rural	backyard	81,569	5,880	14.1	0.6	32	14	0.44	1	0	0	0	0	0	not_tested	0	0	0.38	0.16	0.21	0	0	0	73	2,023
47	market_surveillance	rural	commercial	35,390	5,458	4.1	5.8	1,623	441	0.27	1	0	0	0	0	0	not_tested	0	0	0.44	0.09	0.29	0	0	0	2,657	2,023
48	poultry_mortality	rural	backyard	34,858	1,398	7	3.5	143	65	0.45	1	0	0	0	0	0	not_tested	0	0	0.13	0	0.38	0	0	0	443	2,022
49	market_surveillance	rural	wild	83,484	17,686	5.9	7	817	422	0.52	1	0	0	0	0	0	not_tested	0	0	0.4	0.3	0.27	0	0	0	3,132	2,020
50	routine_sampling	urban	backyard	49,407	2,267	0.2	0.1	27	6	0.22	1	0	0	0	0	0	not_tested	0	0	0.45	0.16	0.3	0	0	0	45	2,022
51	poultry_mortality	peri_urban	backyard	40,350	8,684	0.1	1.9	112	39	0.35	1	0	0	0	0	0	not_tested	0	0	0.3	0.3	0.01	0	0	0	184	2,022
52	poultry_mortality	rural	semi_commercial	23,864	35,708	37.2	0.5	373	44	0.12	0	1	14	1	0	0	not_tested	0	0	0.2	0.21	0.3	0	0	0	216	2,022
53	poultry_mortality	rural	backyard	73,213	4,071	1	1	239	10	0.04	0	1	7	0	0	0	not_tested	0	0	0.22	0.08	0.19	0	0	0	62	2,022
54	poultry_mortality	rural	live_bird_market	8,148	1,660	9	12.8	192	62	0.32	1	0	0	0	0	0	not_tested	0	0	0.37	0.21	0.23	0	0	0	732	2,022
55	routine_sampling	peri_urban	backyard	24,862	5,107	8.4	2.7	173	50	0.29	1	0	0	0	0	0	not_tested	0	0	0.08	0.13	0.11	0	0	0	353	2,022
56	wild_bird_mortality	rural	backyard	63,661	4,848	4.9	3.1	111	31	0.28	1	0	0	0	0	0	not_tested	0	0	0.38	0.21	0.48	0	0	0	357	2,023
57	wild_bird_mortality	urban	backyard	105,733	6,688	0.5	10.7	8	0	0	0	0	0	0	0	0	not_tested	0	0	0.54	0.23	0.32	0	0	0	0	2,022
58	human_ili	rural	wild	26,897	1,980	36.9	3.6	94	38	0.4	1	0	0	0	0	0	not_tested	0	0	0.26	0.03	0.4	1	0	0	211	2,023
59	poultry_mortality	rural	backyard	81,706	2,721	14.9	4.5	14	2	0.14	0	1	40	1	0	0	not_tested	0	0	0.52	0.2	0.38	0	0	0	22	2,021
60	human_ili	urban	semi_commercial	21,529	31,731	1.7	7.8	1,040	191	0.18	0	0	0	0	0	0	not_tested	0	0	0.36	0.11	0.24	1	0	0	1,256	2,019
61	routine_sampling	peri_urban	backyard	50,151	2,029	2.7	20.6	107	36	0.34	1	0	0	0	0	0	not_tested	0	0	0.48	0.27	0	0	0	0	256	2,021
62	poultry_mortality	urban	backyard	48,946	2,403	61.5	5.6	32	5	0.16	0	1	3	0	0	0	not_tested	0	0	0.33	0.22	0.3	0	0	0	24	2,022
63	routine_sampling	rural	backyard	23,988	29,750	13	3.2	51	12	0.24	1	0	0	0	0	0	not_tested	0	0	0.41	0.22	0.39	0	0	0	137	2,020
64	human_ili	rural	semi_commercial	30,719	469	5.4	7	293	59	0.2	0	0	0	0	0	0	not_tested	0	0	0.26	0.2	0.29	1	0	0	404	2,023
65	wild_bird_mortality	peri_urban	commercial	71,282	2,800	7.5	6	1,102	487	0.44	1	1	11	0	0	0	not_tested	0	0	0.28	0.13	0.55	0	0	0	5,651	2,020
66	poultry_mortality	rural	live_bird_market	48,756	9,314	6.6	2.9	166	64	0.39	1	1	27	0	0	0	not_tested	0	0	0.16	0.22	0.16	0	0	0	665	2,021
67	poultry_mortality	rural	backyard	11,297	4,830	12.7	0.2	52	32	0.62	1	0	0	0	0	0	not_tested	0	0	0.15	0	0.27	0	0	0	358	2,022
68	poultry_mortality	urban	backyard	57,930	7,796	14.3	15.1	19	12	0.63	1	1	51	1	0	0	not_tested	0	0	0.22	0.08	0.39	0	0	0	124	2,023
69	poultry_mortality	rural	live_bird_market	22,754	3,008	21.5	3.9	896	64	0.07	0	1	1	0	0	0	not_tested	0	0	0.03	0.18	0.44	0	0	0	491	2,019
70	poultry_mortality	rural	backyard	70,424	2,273	9.2	5.8	16	5	0.31	1	0	0	0	0	0	not_tested	0	0	0.13	0.12	0.46	0	0	0	28	2,023
71	market_surveillance	peri_urban	backyard	38,991	5,324	19.9	1.8	514	42	0.08	0	1	11	1	1	0	not_typed	0	0	0.2	0.16	0.3	0	0	0	421	2,023
72	human_ili	rural	semi_commercial	16,547	7,477	29.3	5.4	839	65	0.08	0	0	0	0	0	0	not_tested	0	0	0.45	0.2	0.25	1	0	0	305	2,023
73	market_surveillance	rural	wild	20,672	4,605	14.4	23.5	286	90	0.31	1	0	0	0	0	0	not_tested	0	0	0.11	0.25	0.34	0	0	0	942	2,020
74	market_surveillance	rural	semi_commercial	27,253	8,344	17	0.3	446	281	0.63	1	1	2	0	0	0	not_tested	0	0	0.58	0	0.32	0	0	0	3,267	2,022
75	market_surveillance	rural	backyard	30,472	6,155	1.3	5.5	31	2	0.06	0	1	7	1	1	1	negative	1	22	0.27	0.01	0.24	0	0	0	143	2,023
76	poultry_mortality	peri_urban	backyard	54,208	1,750	11.2	15	31	9	0.29	1	0	0	0	0	0	not_tested	0	0	0.22	0.04	0.17	0	0	0	60	2,020
77	human_ili	rural	backyard	33,191	3,484	11.3	9.1	195	121	0.62	1	1	7	0	0	0	not_tested	0	0	0.18	0.22	0.45	1	0	0	854	2,020
78	poultry_mortality	urban	backyard	33,395	1,136	1.1	2.8	44	11	0.25	1	1	30	0	0	0	not_tested	0	0	0.41	0.2	0.27	0	0	0	118	2,020
79	human_ili	rural	backyard	67,033	17,400	39	3.6	20	5	0.25	1	0	0	0	0	0	not_tested	0	0	0.14	0	0.3	1	0	0	16	2,020
80	wild_bird_mortality	peri_urban	backyard	53,194	2,874	0.4	12.4	68	7	0.1	0	0	0	0	0	0	not_tested	0	0	0.23	0.03	0.17	0	0	0	52	2,022
81	poultry_mortality	peri_urban	backyard	93,891	3,469	0.3	2.1	61	9	0.15	0	0	0	0	0	0	not_tested	0	0	0.04	0.12	0.23	0	0	0	64	2,020
82	market_surveillance	rural	backyard	57,434	4,506	26.1	38.5	51	13	0.25	1	0	0	0	0	0	not_tested	0	0	0.44	0	0.23	0	0	0	106	2,023
83	poultry_mortality	rural	live_bird_market	78,749	4,784	12.2	4.9	221	162	0.73	1	1	5	1	0	0	not_tested	0	0	0.22	0.07	0.15	0	0	0	862	2,023
84	poultry_mortality	urban	commercial	23,182	2,490	8.9	11.8	608	29	0.05	0	0	0	0	0	0	not_tested	0	0	0.23	0.17	0.22	0	0	0	124	2,022
85	poultry_mortality	peri_urban	backyard	30,895	9,456	5.7	1.6	54	23	0.43	1	0	0	0	0	0	not_tested	0	0	0.3	0.12	0.21	0	0	0	74	2,021
86	human_ili	urban	commercial	55,482	6,018	26.1	10.4	684	211	0.31	1	0	0	0	0	0	not_tested	0	0	0.33	0.01	0.43	1	1	0	2,233	2,022
87	routine_sampling	rural	backyard	44,011	4,888	5.2	10.3	73	24	0.33	1	1	19	1	0	0	not_tested	0	0	0.46	0.1	0.38	0	0	0	79	2,020
88	market_surveillance	peri_urban	commercial	47,733	10,459	9	3.2	271	24	0.09	0	1	15	1	1	0	H5N1	0	0	0.37	0.1	0.08	0	0	0	225	2,023
89	poultry_mortality	peri_urban	semi_commercial	33,230	4,354	26.2	0.4	764	285	0.37	1	1	2	1	0	0	not_tested	0	0	0.04	0.06	0.35	0	0	0	920	2,023
90	routine_sampling	rural	semi_commercial	30,207	3,022	40.1	19.2	827	218	0.26	1	1	2	0	0	0	not_tested	0	0	0.39	0.12	0.24	0	0	0	1,836	2,019
91	poultry_mortality	peri_urban	backyard	69,104	5,860	12.4	4.5	52	11	0.21	1	1	16	1	1	0	negative	0	0	0.43	0.16	0.58	0	0	0	111	2,023
92	poultry_mortality	rural	backyard	48,440	13,690	5.3	4.7	434	188	0.43	1	0	0	0	0	0	not_tested	0	0	0.29	0.22	0.2	0	0	0	2,149	2,020
93	poultry_mortality	rural	commercial	25,599	3,294	3.5	7.5	829	359	0.43	1	0	0	0	0	0	not_tested	0	0	0.15	0.18	0.31	0	0	0	3,356	2,019
94	wild_bird_mortality	peri_urban	commercial	13,083	2,242	27.5	22.2	453	55	0.12	0	1	10	1	1	0	not_typed	0	0	0.2	0.1	0.28	0	0	0	353	2,023
95	human_ili	rural	live_bird_market	57,707	3,532	11.3	14	1,405	737	0.52	1	0	0	0	0	0	not_tested	0	0	0.31	0.07	0.31	1	0	0	7,975	2,022
96	poultry_mortality	rural	semi_commercial	53,513	2,111	4.2	19.5	238	34	0.14	0	1	4	1	0	0	not_tested	0	0	0.21	0.14	0.44	0	0	0	392	2,022
97	human_ili	peri_urban	backyard	48,816	6,090	26.9	25.6	7	0	0	0	1	54	0	0	0	not_tested	0	0	0.25	0.19	0.17	1	0	0	0	2,023
98	poultry_mortality	peri_urban	semi_commercial	12,162	13,431	5.7	7.7	624	170	0.27	1	1	1	0	0	0	not_tested	0	0	0.25	0.27	0.41	0	0	0	1,830	2,019
99	poultry_mortality	urban	live_bird_market	7,623	3,531	1.2	4.7	2,351	518	0.22	1	0	0	0	0	0	not_tested	0	0	0.36	0.19	0.27	0	0	0	3,505	2,022
100	human_ili	peri_urban	backyard	40,282	742	7.9	39.5	162	53	0.33	1	1	29	0	0	0	not_tested	0	0	0.4	0.25	0.4	1	0	0	520	2,019

End of preview. Expand in Data Studio

⚠️ Synthetic dataset — Parameterized from published SSA literature, not real observations. Not suitable for empirical analysis or policy inference.

Avian Influenza Surveillance

Abstract

Synthetic dataset modeling avian influenza surveillance events across three SSA scenarios. Captures poultry mortality, detection timeliness, lab confirmation, culling response, biosecurity, One Health coordination, and economic losses. Based on WHO (2023), FAO (2023) HPAI spread data, and Fusaro et al. (2019).

Parameterization Evidence

Parameter	Value	Source	Year
H5N1 human CFR	52% (882 cases, 461 deaths)	WHO cumulative report	2023
HPAI H5N1 clade 2.3.4.4b SSA spread	7+ countries 2021-2023	FAO EMPRES	2023
Backyard poultry SSA	70-80% of production	AU-IBAR	2022
Outbreak detection delay	7-30 days	Monne et al. Emerg Inf Dis	2015
SSA poultry population	>2 billion	FAO/AU-IBAR	2022

Validation

Usage

from datasets import load_dataset
ds = load_dataset("electricsheepafrica/avian-influenza-surveillance", name="moderate_surveillance")
df = ds['train'].to_pandas()

References

WHO (2023). Cumulative H5N1 cases. https://www.who.int/influenza
FAO (2023). HPAI global situation. EMPRES-i
Fusaro A et al. (2019). AI in Africa epidemiology. Sci Reports. DOI: 10.1038/s41598-019-39132-6
AU-IBAR (2022). Africa animal health surveillance strategy
Monne I et al. (2015). HPAI in West Africa. Emerg Inf Dis. DOI: 10.3201/eid2107.150host

License

CC-BY-4.0

Downloads last month: 45