from pathlib import Path import numpy as np import pandas as pd from src.process.io import prepare_dirs, unzip, unzip_nested, upload, copy_to_local from src.process.processor import process_shp # === Step 1: Set up local and drive directory paths === local_processed_dir, drive_download_dir, drive_processed_dir = ( prepare_dirs("esdac", Path(__file__).parent.stem) ) # === Step 2: Extract all ZIP files from drive/download to local/processed === unzip(local_processed_dir, drive_download_dir) unzip_nested(local_processed_dir) copy_to_local(local_processed_dir, drive_download_dir, files=[ "LUCAS2015_AncillaryData_20201007.csv" ]) # === Step 3: Process all SHP files under local/processed === move_list = [] for tif_path in sorted(local_processed_dir.rglob("*.shp")): move_list = process_shp(tif_path, move_list) # === Step 4: Process assets === spec_dir = local_processed_dir / "LUCAS2015_spectra/LUCAS2015_Soil_Spectra_EU28" out_path = local_processed_dir / "assets/psd" out_path.mkdir(parents=True, exist_ok=True) for spec_path in sorted(spec_dir.rglob("*.csv")): df = pd.read_csv(spec_path) # Identify metadata columns to exclude meta_cols = {"source", "SampleID", "PointID", "NUTS_0", "SampleN"} # Extract spectral columns (handle both "spc.xxx" and plain numeric names) spc_cols = [ c for c in df.columns if c not in meta_cols and (c.replace(".", "", 1).isdigit() or c.startswith("spc.")) ] # Parse numeric axis values from the column names x_vals = np.array([ float(c.replace("spc.", "")) if c.startswith("spc.") else float(c) for c in spc_cols ]) # Sort columns by numeric x sort_idx = np.argsort(x_vals) x_vals = x_vals[sort_idx] spc_cols_sorted = [spc_cols[i] for i in sort_idx] for _, row in df.iterrows(): point_id = row["PointID"] sample_id = '0' # main data csv does not contain sample id y_vals = row[spc_cols_sorted].to_numpy(dtype=np.float32) arr = np.column_stack([x_vals, y_vals]) fname = out_path / f"lucas2015_{point_id}_{sample_id}.npz" np.savez(fname, psd=arr) print(f"✅ PSD Spectrum data saved in assets") # === NEW Step: Zip PSD folder and upload only the zip === psd_dir = out_path zip_path = local_processed_dir / "assets/psd.zip" import zipfile with zipfile.ZipFile(zip_path, "w", compression=zipfile.ZIP_DEFLATED) as z: for npz_file in psd_dir.glob("*.npz"): z.write(npz_file, arcname=npz_file.name) print(f"✅ Created ZIP archive: {zip_path.name}") move_list.append(zip_path) # only zip is uploaded # === Step 5: Collect all generated CSVs and upload to drive/processed === csvs = list(local_processed_dir.rglob("*.csv")) for csv_path in csvs: move_list.append(csv_path) upload(local_processed_dir, drive_processed_dir, move_list)