| import json |
| import pickle |
| from typing import Tuple, Optional, List, Dict, Any |
|
|
| import numpy as np |
| import pandas as pd |
| from geopy.distance import geodesic |
|
|
| from gadm_utils import GADMHandler |
| from geo_utils import resolve_place |
| from plot_utils import scatter_plot |
| import ast |
|
|
| class LUCASSoilData: |
| def __init__(self, table_path: str, dict_path: str, |
| column_names_path: str, |
| gadm_handler: GADMHandler) -> None: |
|
|
| self.df = pd.read_csv(table_path, low_memory=False) |
| self.df["LAT_LONG"] = self.df["LAT_LONG"].apply( |
| lambda x: ast.literal_eval(x) if isinstance(x, str) else x |
| ) |
|
|
| with open(column_names_path, 'r') as f: |
| self.column_names = json.load(f)["column_names"] |
|
|
| self.property_map = {} |
| for full_name in self.column_names: |
| base, unit = full_name.split("(", maxsplit=1) if "(" in full_name else (full_name, None) |
| if unit is not None: |
| unit = unit[:-1].strip() |
|
|
| theme, prop = [x.strip() for x in base.split(":", 1)] |
| self.property_map[prop] = (full_name, theme, unit) |
|
|
| with open(dict_path, 'rb') as f: |
| self.sample_dict = pickle.load(f) |
|
|
| self.gadm_handler = gadm_handler |
|
|
| def resolve_theme_property_unit(self, input_string: str) -> Tuple[str, str, str, Optional[str]]: |
| """ |
| Resolve and return (full_name, theme, property, unit) from a user input string. |
| The user may provide: |
| - full form: "theme:property (unit)" |
| - partial form: "theme:property" |
| - property only: "property" |
| """ |
|
|
| input_string = input_string.strip() |
|
|
| |
| if "(" in input_string: |
| base, input_unit = input_string.split("(", maxsplit=1) |
| input_unit = input_unit[:-1].strip() |
| else: |
| base, input_unit = input_string, None |
|
|
| |
| if ":" in base: |
| input_theme, input_property = [x.strip() for x in base.split(":", 1)] |
| else: |
| input_theme, input_property = None, base.strip() |
|
|
| |
| if input_property not in self.property_map: |
| raise ValueError(f"Property '{input_property}' not found in dataset.") |
|
|
| full_name, expected_theme, expected_unit = self.property_map[input_property] |
|
|
| |
| if input_theme is not None and input_theme != expected_theme: |
| raise ValueError(f"Theme mismatch: expected '{expected_theme}', got '{input_theme}'.") |
|
|
| |
| if input_unit is not None and input_unit != expected_unit: |
| raise ValueError(f"Unit mismatch for '{input_property}': expected '{expected_unit}', got '{input_unit}'.") |
|
|
| return full_name, expected_theme, input_property, expected_unit |
|
|
| def get_point(self, |
| place: str | tuple[float, float], |
| properties: List[str], |
| distance_top_k: int = 20, |
| distance_limit: float = 200000, |
| session_name: Optional[str] = None) -> Dict[str, Any]: |
| """ |
| Retrieve soil data near a place, selecting the best among top-k nearest samples. |
| |
| Rules: |
| 1) Find top-k nearest samples (by squared distance, then geodesic meters). |
| 2) Exclude samples farther than `distance_limit` (meters). |
| 3) From remaining samples, choose the one with the most valid properties. |
| (valid = property exists AND sample[...] has non-None "value"). |
| Tie-break: smaller distance wins. |
| 4) If all survivors have zero valid properties, return Failed. |
| 5) Resolver is strict: if user requests an unknown property, immediate Failed. |
| |
| Output always contains `query_input` and `query_status`. Sample data is |
| included only for success or partial success cases. |
| """ |
|
|
| |
| query_input = { |
| "place": place, |
| "properties": properties, |
| "distance_limit": distance_limit, |
| "distance_top_k": distance_top_k, |
| } |
|
|
| |
| try: |
| if isinstance(place, str): |
| if place not in self.gadm_handler.tree: |
| resolved = resolve_place(place, session_name=session_name, gadm_handler=self.gadm_handler) |
| gid = resolved.get("gid") |
| if gid is None: |
| return { |
| "query_input": query_input, |
| "query_status": f"Failed. Cannot resolve place: {place}", |
| "query_output": {} |
| } |
| else: |
| gid = place |
|
|
| geom_info = self.gadm_handler.get_geometry_info(gid) |
| if geom_info is None: |
| return { |
| "query_input": query_input, |
| "query_status": f"Failed. Cannot get geometry for place (GID): {place} ({gid})", |
| "query_output": {} |
| } |
|
|
| lat, lon = geom_info["latitude"], geom_info["longitude"] |
| else: |
| lat, lon = place |
| except Exception as e: |
| return { |
| "query_input": query_input, |
| "query_status": f"Failed. {str(e)}", |
| "query_output": {} |
| } |
|
|
| |
| resolved_props = [] |
| try: |
| for input_prop in properties: |
| full_name, theme, prop, unit = self.resolve_theme_property_unit(input_prop) |
| resolved_props.append((theme, prop, input_prop)) |
| except Exception as e: |
| return { |
| "query_input": query_input, |
| "query_status": f"Failed. {str(e)}", |
| "query_output": {} |
| } |
|
|
| |
| try: |
| latlon = np.vstack(self.df["LAT_LONG"].values).astype(float) |
| d2 = (latlon[:, 0] - lat) ** 2 + (latlon[:, 1] - lon) ** 2 |
|
|
| k = max(1, min(distance_top_k, len(d2))) |
| idx_k = np.argpartition(d2, kth=k - 1)[:k] |
|
|
| candidates = [] |
| for idx in idx_k: |
| sample_lat, sample_lon = latlon[idx] |
| dist_m = geodesic((lat, lon), (sample_lat, sample_lon)).meters |
| candidates.append((idx, dist_m)) |
|
|
| survivors = [(idx, dist_m) for (idx, dist_m) in candidates if dist_m <= distance_limit] |
| if not survivors: |
| return { |
| "query_input": query_input, |
| "query_status": f"Failed. No nearby samples within {distance_limit:g} m.", |
| "query_output": {} |
| } |
|
|
| except Exception as e: |
| return { |
| "query_input": query_input, |
| "query_status": f"Failed. Error during nearest-point search: {str(e)}", |
| "query_output": {} |
| } |
|
|
| |
| def count_valid(idx: int) -> int: |
| row = self.df.iloc[idx] |
| src = self.sample_dict.get(row["id"], {}) |
| valid = 0 |
| for theme, prop, _orig in resolved_props: |
| try: |
| val = src[theme][prop]["value"] |
| if val is not None: |
| valid += 1 |
| except Exception: |
| pass |
| return valid |
|
|
| scored = [(idx, dist, count_valid(idx)) for idx, dist in survivors] |
| scored.sort(key=lambda x: (-x[2], x[1])) |
| best_idx, best_dist, best_valid = scored[0] |
|
|
| if best_valid == 0: |
| return { |
| "query_input": query_input, |
| "query_status": ( |
| "Failed. No sample within " |
| f"{distance_limit:g} m contains any of the requested properties." |
| ), |
| "query_output": {} |
| } |
|
|
| |
| try: |
| row = self.df.iloc[best_idx] |
| source = self.sample_dict[row["id"]] |
| except Exception: |
| return { |
| "query_input": query_input, |
| "query_status": f"Failed. Sample data missing for best candidate.", |
| "query_output": {} |
| } |
|
|
| result = {} |
| for key in ["LAT_LONG", "GADM_IDS", "GADM_NAMES", "COUNTRY_CODE", |
| "SAMPLE_DATE", "SAMPLE_DEPTH_RANGE_CM", "SAMPLE_SOURCE_DATASET"]: |
| result[key] = source.get(key) |
|
|
| failed_props = [] |
| for theme, prop, original_input in resolved_props: |
| try: |
| val = source[theme][prop]["value"] |
| if val is not None: |
| if theme not in result: |
| result[theme] = {} |
| result[theme][prop] = val |
| else: |
| failed_props.append(original_input) |
| except Exception: |
| failed_props.append(original_input) |
|
|
| if failed_props and len(failed_props) < len(resolved_props): |
| status = ( |
| "Partial success. Some properties were not available: " |
| + ", ".join(failed_props) |
| + f". Distance to nearest sample (m): {best_dist:.1f}." |
| ) |
| else: |
| status = f"Success. Distance to nearest sample (m): {best_dist:.1f}." |
|
|
| result["entry_key"] = row["id"] |
| return { |
| "query_output": result, |
| "query_input": query_input, |
| "query_status": status, |
| } |
|
|
| def get_map(self, |
| place: str | tuple[float, float, float], |
| properties: List[str], |
| session_name: Optional[str] = None, |
| **kwargs) -> Dict[str, Any]: |
| """ |
| Generate scatter plots for the specified properties around a GADM region. |
| |
| Returns: |
| { |
| "query_output": { "<full_name>": "<url or warning string>", ... }, |
| "query_input": { "place": ..., "properties": [...] }, |
| "query_status": "Success. N plot(s) generated." | "Failed. <reason>" |
| } |
| """ |
| |
| query_input = {"place": place, "properties": properties} |
|
|
| |
| try: |
| if isinstance(place, str): |
| if place not in self.gadm_handler.tree: |
| resolved = resolve_place(place, session_name=session_name, gadm_handler=self.gadm_handler) |
| gid = resolved.get("gid") |
| if gid is None: |
| return {"query_input": query_input, |
| "query_status": f"Failed. Cannot resolve place: {place}", |
| "query_output": {}} |
| else: |
| gid = place |
| else: |
| |
| if len(place) != 3: |
| return {"query_input": query_input, |
| "query_status": "Failed. Tuple `place` must be (lat, lon, bbox_area).", |
| "query_output": {}} |
| lat, lon, bbox_area = place |
| gid = self.gadm_handler.find_gid(lat, lon, bbox_area) |
| if gid is None: |
| return {"query_input": query_input, |
| "query_status": "Failed. No matching GADM region found for given coordinates.", |
| "query_output": {}} |
| geom_info = self.gadm_handler.get_geometry_info(gid) |
| if geom_info is None: |
| return {"query_input": query_input, |
| "query_status": f"Failed. Cannot get geometry for place (GID): {gid}", |
| "query_output": {}} |
| except Exception as e: |
| return {"query_input": query_input, "query_status": f"Failed. {str(e)}", |
| "query_output": {}} |
|
|
| |
| resolved = [] |
| try: |
| for input_prop in properties: |
| full_name, theme, prop, unit = self.resolve_theme_property_unit(input_prop) |
| resolved.append((full_name, theme, prop, unit)) |
| except Exception as e: |
| return {"query_input": query_input, "query_status": f"Failed. {str(e)}", "query_output": {}} |
|
|
| if len(resolved) > 5: |
| return {"query_input": query_input, |
| "query_status": "Failed. API does not accept more than 5 properties.", |
| "query_output": {}} |
|
|
| |
| try: |
| siblings = self.gadm_handler.get_tree_info(gid)["siblings"] |
| gids = [gid] + siblings |
|
|
| polygon = self.gadm_handler.get_polygon(gid) |
| minx, miny, maxx, maxy = polygon.bounds |
|
|
| |
| dlat = (maxy - miny) or 1.0 |
| dlon = (maxx - minx) or 1.0 |
| lat_min, lat_max = miny - dlat, maxy + dlat |
| lon_min, lon_max = minx - dlon, maxx + dlon |
| except Exception as e: |
| return {"query_input": query_input, "query_status": f"Failed. {str(e)}", "query_output": {}} |
|
|
| |
| try: |
| latlon = np.vstack(self.df["LAT_LONG"].values).astype(float) |
| lats, lons = latlon[:, 0], latlon[:, 1] |
| mask = (lats >= lat_min) & (lats <= lat_max) & (lons >= lon_min) & (lons <= lon_max) |
| df_region = self.df[mask] |
| except Exception as e: |
| return {"query_input": query_input, "query_status": f"Failed. {str(e)}", "query_output": {}} |
|
|
| |
| def plot_one(full_name: str, prop: str) -> str: |
| try: |
| if full_name not in df_region.columns: |
| return "Skipped. No valid data." |
|
|
| |
| values = pd.to_numeric(df_region[full_name], errors="coerce") |
| ok = values.notna() |
| if not ok.any(): |
| return "Skipped. No valid data." |
|
|
| |
| latlon_sub = np.vstack(df_region.loc[ok, "LAT_LONG"].values).astype(float) |
| data = np.column_stack([latlon_sub[:, 0], latlon_sub[:, 1], values.loc[ok].astype(float).values]) |
|
|
| |
| |
| img_path = scatter_plot( |
| gadm_handler=self.gadm_handler, |
| data=data, |
| is_categorical=False, |
| short_name=prop, |
| long_name=full_name, |
| map_boundary_gadm_gids=gids, |
| map_limits="gadm_first", |
| session_name=session_name, |
| **kwargs |
| ) |
| return img_path |
| except Exception: |
| return "Skipped. No valid data." |
|
|
| |
| query_output: Dict[str, str] = {} |
| for full_name, theme, prop, unit in resolved: |
| query_output[full_name] = plot_one(full_name, prop) |
|
|
| |
| n_plots = sum(1 for v in query_output.values() if isinstance(v, str) and v.endswith(".png")) |
| if n_plots >= 1: |
| status = f"Success. {n_plots} plot{'s' if n_plots != 1 else ''} generated." |
| else: |
| status = "Failed. No plots generated." |
|
|
| return { |
| "query_output": query_output, |
| "query_input": query_input, |
| "query_status": status, |
| } |
|
|