| function [newannotation, newimg, crop, scaling, err, msg] = LMcookimage(annotation, img, varargin) |
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| msg = ''; err = 0; |
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| variables = {'maximagesize', 'objectname', 'objectsize', 'objectlocation', 'multiplecrops', 'impad', 'minobjectsize', 'polygoninstance'}; |
| defaults = {[], '', [], 'original', 'no', [], [], []}; |
| [maximagesize, objectname, objectsize, objectlocation, multiplecrops, impad, minobjectsize, polygoninstance] = ... |
| parseparameters(varargin, variables, defaults); |
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| [nrows ncols nc] = size(img); |
| crop = []; scaling = []; |
| newannotation=[]; |
| newimg=[]; |
| crop=[]; |
| scaling=[]; |
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| if ~isempty(objectname) | ~isempty(polygoninstance) |
| |
| if ~isempty(polygoninstance) |
| j = polygoninstance; |
| else |
| annotation = LMobjectsinsideimage(annotation, img, 5); |
| j = LMobjectindex(annotation, objectname); |
| if length(j) == 0; err = 1; msg = 'object not present'; end |
| end |
| end |
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| if err == 1; return; end |
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| if ~isempty(objectname) | ~isempty(polygoninstance) |
| Ninstances = min(1,length(j)); |
| |
| |
| clear cx nx cy ny crop |
| for i = 1:Ninstances |
| [X,Y] = getLMpolygon(annotation.object(j(1)).polygon); |
| x1(i) = min(X); x2(i) = max(X); |
| y1(i) = min(Y); y2(i) = max(Y); |
| cx(i) = (x1(i)+x2(i))/2; nx(i) = (x2(i)-x1(i)); |
| cy(i) = (y1(i)+y2(i))/2; ny(i) = (y2(i)-y1(i)); |
| end |
| |
| if strcmp(multiplecrops, 'no') |
| ny = min(ny); nx = min(nx); Ninstances = 1; |
| end |
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| for i = 1:Ninstances |
| if isempty(objectsize) |
| scaling(i) = 1; |
| else |
| scaling(i) = min(objectsize(1)/ny, objectsize(2)/nx); |
| end |
| if ~isempty(minobjectsize) & ~isempty(maximagesize) |
| sc = nrows/maximagesize(1)*ny; |
| |
| scaling(i) = min(minobjectsize(1)/ny, minobjectsize(2)/nx); |
| end |
| |
| |
| if strcmp(objectlocation, 'random') |
| if isempty(maximagesize) |
| Dx = fix(ncols); Dy = fix(nrows); |
| else |
| Dx = fix(maximagesize(2)/scaling); Dy = fix(maximagesize(1)/scaling); |
| end |
| |
| |
| tx = rand; nx = fix(max(1, x2(i) - Dx)*tx + min(x1(i), ncols-Dx)*(1-tx)); |
| ty = rand; ny = fix(max(1, y2(i) - Dy)*ty + min(y1(i), nrows-Dy)*(1-ty)); |
| crop(:,i) = round([nx nx+Dx ny ny+Dy]); |
| end |
| |
| if strcmp(objectlocation, 'centered') |
| if isempty(maximagesize) |
| Dx = fix(ncols/2); Dy = fix(nrows/2); |
| else |
| Dx = fix(maximagesize(2)/2/scaling); Dy = fix(maximagesize(1)/2/scaling); |
| end |
| Dx = min([cx Dx ncols-cx]); |
| Dy = min([cy Dy nrows-cy]); |
| crop(:,i) = round([cx-fix(Dx) cx+ceil(Dx) cy-fix(Dy) cy+ceil(Dy)]); |
| end |
| |
| if strcmp(objectlocation, 'original') |
| |
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| if isempty(maximagesize) |
| crop = []; |
| else |
| px = cx/ncols; |
| py = cy/nrows; |
| ms = round(maximagesize/scaling); |
| ncx = round(ms(2)*px); ncy = round(ms(1)*py); |
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| x1 = max([min([cx-ncx, cx-nx/2]) 1 cx+nx/2-ms(2)]); |
| x2 = min([x1+ms(2) ncols]); |
| y1 = max([min(cy-ncy, cy-ny/2) 1 cy+ny/2-ms(1)]); |
| y2 = min([y1+ms(1) nrows]); |
| |
| crop(:,i) = round([x1 x2 y1 y2]); |
| end |
| end |
| end |
| else |
| scaling = min(maximagesize(1)/nrows, maximagesize(2)/ncols); |
| crop = ceil([1 maximagesize(2)/scaling 1 maximagesize(1)/scaling]); |
| end |
|
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| if isempty(crop); crop = [1 size(img,2) 1 size(img,1)]; end |
| if isempty(scaling); scaling = 1; end |
| |
| [newannotation, newimg, crop] = LMimcrop(annotation, img, crop); |
| [newannotation, newimg] = LMimscale(newannotation, newimg, scaling, 'bilinear'); |
|
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| if ~isempty(maximagesize) |
| if size(newimg,1)>maximagesize(1) | size(newimg,2)>maximagesize(2) |
| [newannotation, newimg] = LMimcrop(newannotation, newimg, [1 maximagesize(2) 1 maximagesize(1)]); |
| end |
| if ~isempty(impad) |
| |
| [newannotation, newimg] = LMimpad(newannotation, newimg, maximagesize, impad); |
| end |
| end |
|
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| newannotation = LMobjectsinsideimage(newannotation, newimg, 0); |
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| if scaling > 1; |
| err = 1; |
| msg = [msg; 'WARNING: The image has been upsampled. This will produce blur.']; |
| end |
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