Add batch 52
Browse filesThis view is limited to 50 files because it contains too many changes. See raw diff
- 1a86/1a86_ligand.mol2 +118 -0
- 1a86/1a86_ligand.sdf +110 -0
- 1a86/1a86_protein_esmfold_aligned_tr_fix.pdb +0 -0
- 1a86/1a86_protein_processed_fix.pdb +0 -0
- 1dbb/1dbb_ligand.mol2 +125 -0
- 1dbb/1dbb_ligand.sdf +115 -0
- 1dbb/1dbb_protein_esmfold_aligned_tr_fix.pdb +0 -0
- 1dbb/1dbb_protein_processed_fix.pdb +0 -0
- 1gx4/1gx4_ligand.mol2 +89 -0
- 1gx4/1gx4_ligand.sdf +85 -0
- 1gx4/1gx4_protein_esmfold_aligned_tr_fix.pdb +0 -0
- 1gx4/1gx4_protein_processed_fix.pdb +0 -0
- 1i2s/1i2s_ligand.mol2 +51 -0
- 1i2s/1i2s_ligand.sdf +47 -0
- 1i2s/1i2s_protein_esmfold_aligned_tr_fix.pdb +0 -0
- 1i2s/1i2s_protein_processed_fix.pdb +0 -0
- 1lvc/1lvc_ligand.mol2 +131 -0
- 1lvc/1lvc_ligand.sdf +129 -0
- 1lvc/1lvc_protein_esmfold_aligned_tr_fix.pdb +0 -0
- 1lvc/1lvc_protein_processed_fix.pdb +0 -0
- 1mrs/1mrs_ligand.mol2 +87 -0
- 1mrs/1mrs_ligand.sdf +81 -0
- 1mrs/1mrs_protein_esmfold_aligned_tr_fix.pdb +0 -0
- 1mrs/1mrs_protein_processed_fix.pdb +0 -0
- 1pip/1pip_ligand.mol2 +206 -0
- 1pip/1pip_ligand.sdf +198 -0
- 1pip/1pip_protein_esmfold_aligned_tr_fix.pdb +0 -0
- 1pip/1pip_protein_processed_fix.pdb +0 -0
- 1qhc/1qhc_ligand.mol2 +162 -0
- 1qhc/1qhc_ligand.sdf +164 -0
- 1qhc/1qhc_protein_esmfold_aligned_tr_fix.pdb +962 -0
- 1qhc/1qhc_protein_processed_fix.pdb +0 -0
- 1vkj/1vkj_ligand.mol2 +94 -0
- 1vkj/1vkj_ligand.sdf +92 -0
- 1vkj/1vkj_protein_esmfold_aligned_tr_fix.pdb +0 -0
- 1vkj/1vkj_protein_processed_fix.pdb +0 -0
- 2aq7/2aq7_ligand.mol2 +78 -0
- 2aq7/2aq7_ligand.sdf +68 -0
- 2aq7/2aq7_protein_esmfold_aligned_tr_fix.pdb +0 -0
- 2aq7/2aq7_protein_processed_fix.pdb +0 -0
- 2bdl/2bdl_ligand.mol2 +178 -0
- 2bdl/2bdl_ligand.sdf +168 -0
- 2bdl/2bdl_protein_esmfold_aligned_tr_fix.pdb +0 -0
- 2bdl/2bdl_protein_processed_fix.pdb +0 -0
- 2bgd/2bgd_ligand.mol2 +90 -0
- 2bgd/2bgd_ligand.sdf +80 -0
- 2bgd/2bgd_protein_esmfold_aligned_tr_fix.pdb +0 -0
- 2bgd/2bgd_protein_processed_fix.pdb +0 -0
- 2gz8/2gz8_ligand.mol2 +84 -0
- 2gz8/2gz8_ligand.sdf +72 -0
1a86/1a86_ligand.mol2
ADDED
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@@ -0,0 +1,118 @@
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| 1 |
+
###
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| 2 |
+
### Created by X-TOOL on Mon Sep 10 21:12:47 2018
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| 3 |
+
###
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| 4 |
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| 5 |
+
@<TRIPOS>MOLECULE
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| 6 |
+
1a86_ligand
|
| 7 |
+
51 51 1 0 0
|
| 8 |
+
SMALL
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| 9 |
+
GAST_HUCK
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| 10 |
+
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| 11 |
+
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| 12 |
+
@<TRIPOS>ATOM
|
| 13 |
+
1 N 25.1650 59.6390 53.3200 N.am 1 0ZB -0.1620
|
| 14 |
+
2 OH 24.3590 58.8820 54.1730 O.3 1 0ZB -0.2716
|
| 15 |
+
3 C1 26.3830 59.3710 53.7470 C.2 1 0ZB 0.2212
|
| 16 |
+
4 O1 26.6800 58.2420 54.1830 O.2 1 0ZB -0.3933
|
| 17 |
+
5 CA 27.4380 60.4370 53.3710 C.3 1 0ZB 0.1391
|
| 18 |
+
6 CB 28.5690 60.5180 54.4160 C.3 1 0ZB -0.0139
|
| 19 |
+
7 CG 28.4070 61.4390 55.6420 C.3 1 0ZB -0.0424
|
| 20 |
+
8 CD1 28.4010 62.8960 55.2200 C.3 1 0ZB -0.0624
|
| 21 |
+
9 CD2 27.1420 61.1310 56.4160 C.3 1 0ZB -0.0624
|
| 22 |
+
10 C 28.0190 60.3780 51.9550 C.2 1 0ZB 0.2007
|
| 23 |
+
11 O 27.9030 61.3360 51.1850 O.2 1 0ZB -0.3933
|
| 24 |
+
12 H1 24.8864 60.2378 52.5691 H 1 0ZB 0.2218
|
| 25 |
+
13 H2 23.4466 59.0102 53.9413 H 1 0ZB 0.2490
|
| 26 |
+
14 N 28.6190 59.2480 51.6030 N.am 1 0ZB -0.2619
|
| 27 |
+
15 CA 29.1740 59.0960 50.2690 C.3 1 0ZB 0.1424
|
| 28 |
+
16 C 28.2140 58.2700 49.4040 C.2 1 0ZB 0.2052
|
| 29 |
+
17 O 28.5730 57.8160 48.3120 O.2 1 0ZB -0.3943
|
| 30 |
+
18 CB 30.5550 58.4370 50.3320 C.3 1 0ZB 0.0406
|
| 31 |
+
19 CG 31.3150 58.5460 49.0250 C.2 1 0ZB 0.0393
|
| 32 |
+
20 OD1 31.8390 59.6400 48.7240 O.co2 1 0ZB -0.5688
|
| 33 |
+
21 OD2 31.3890 57.5330 48.3020 O.co2 1 0ZB -0.5688
|
| 34 |
+
22 H3 26.9023 61.3963 53.4227 H 1 0ZB 0.0774
|
| 35 |
+
23 N 26.9940 58.0710 49.9020 N.am 1 0ZB -0.2736
|
| 36 |
+
24 CB 25.9380 57.3280 49.2210 C.3 1 0ZB 0.0645
|
| 37 |
+
25 CG 25.9320 55.8400 48.9830 C.ar 1 0ZB -0.0210
|
| 38 |
+
26 CD1 26.7100 54.9850 49.7690 C.ar 1 0ZB -0.0584
|
| 39 |
+
27 CE1 26.6820 53.5940 49.5770 C.ar 1 0ZB -0.0685
|
| 40 |
+
28 CD2 25.1160 55.2830 47.9870 C.ar 1 0ZB -0.0584
|
| 41 |
+
29 CE2 25.0800 53.9040 47.7880 C.ar 1 0ZB -0.0685
|
| 42 |
+
30 CZ 25.8610 53.0490 48.5820 C.ar 1 0ZB -0.0687
|
| 43 |
+
31 H4 29.4727 60.8500 53.8840 H 1 0ZB 0.0318
|
| 44 |
+
32 H5 28.7231 59.4988 54.8000 H 1 0ZB 0.0318
|
| 45 |
+
33 H6 29.2667 61.2728 56.3078 H 1 0ZB 0.0298
|
| 46 |
+
34 H7 28.2846 63.5345 56.1082 H 1 0ZB 0.0232
|
| 47 |
+
35 H8 27.5644 63.0740 54.5284 H 1 0ZB 0.0232
|
| 48 |
+
36 H9 29.3496 63.1362 54.7176 H 1 0ZB 0.0232
|
| 49 |
+
37 H10 27.1473 60.0743 56.7216 H 1 0ZB 0.0232
|
| 50 |
+
38 H11 26.2662 61.3241 55.7791 H 1 0ZB 0.0232
|
| 51 |
+
39 H12 27.0939 61.7708 57.3095 H 1 0ZB 0.0232
|
| 52 |
+
40 H13 28.6895 58.4970 52.2595 H 1 0ZB 0.1886
|
| 53 |
+
41 H14 29.2845 60.0930 49.8176 H 1 0ZB 0.0819
|
| 54 |
+
42 H15 30.4261 57.3723 50.5764 H 1 0ZB 0.0478
|
| 55 |
+
43 H16 31.1427 58.9262 51.1227 H 1 0ZB 0.0478
|
| 56 |
+
44 H17 26.7883 58.4561 50.8017 H 1 0ZB 0.1878
|
| 57 |
+
45 H18 25.8589 57.7830 48.2226 H 1 0ZB 0.0683
|
| 58 |
+
46 H19 25.0210 57.5353 49.7921 H 1 0ZB 0.0683
|
| 59 |
+
47 H20 27.3463 55.4031 50.5406 H 1 0ZB 0.0557
|
| 60 |
+
48 H21 27.2924 52.9460 50.1955 H 1 0ZB 0.0599
|
| 61 |
+
49 H22 24.5078 55.9312 47.3664 H 1 0ZB 0.0557
|
| 62 |
+
50 H23 24.4443 53.4885 47.0145 H 1 0ZB 0.0599
|
| 63 |
+
51 H24 25.8287 51.9767 48.4262 H 1 0ZB 0.0559
|
| 64 |
+
@<TRIPOS>BOND
|
| 65 |
+
1 1 12 1
|
| 66 |
+
2 3 1 am
|
| 67 |
+
3 1 2 1
|
| 68 |
+
4 2 13 1
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| 69 |
+
5 5 3 1
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| 70 |
+
6 3 4 2
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| 71 |
+
7 10 5 1
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| 72 |
+
8 5 6 1
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| 73 |
+
9 6 7 1
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| 74 |
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10 7 9 1
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| 75 |
+
11 7 8 1
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| 76 |
+
12 10 11 2
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| 77 |
+
13 16 15 1
|
| 78 |
+
14 15 18 1
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| 79 |
+
15 15 14 1
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| 80 |
+
16 5 22 1
|
| 81 |
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17 18 19 1
|
| 82 |
+
18 19 20 ar
|
| 83 |
+
19 19 21 ar
|
| 84 |
+
20 16 17 2
|
| 85 |
+
21 6 31 1
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| 86 |
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22 23 24 1
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| 87 |
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23 24 25 1
|
| 88 |
+
24 25 28 ar
|
| 89 |
+
25 25 26 ar
|
| 90 |
+
26 26 27 ar
|
| 91 |
+
27 27 30 ar
|
| 92 |
+
28 29 30 ar
|
| 93 |
+
29 28 29 ar
|
| 94 |
+
30 14 10 am
|
| 95 |
+
31 16 23 am
|
| 96 |
+
32 6 32 1
|
| 97 |
+
33 7 33 1
|
| 98 |
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34 8 34 1
|
| 99 |
+
35 8 35 1
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| 100 |
+
36 8 36 1
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| 101 |
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37 9 37 1
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| 102 |
+
38 9 38 1
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| 103 |
+
39 9 39 1
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| 104 |
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40 14 40 1
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| 105 |
+
41 15 41 1
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| 106 |
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42 18 42 1
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| 107 |
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43 18 43 1
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| 108 |
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44 23 44 1
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| 109 |
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45 24 45 1
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| 110 |
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46 24 46 1
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| 111 |
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47 26 47 1
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| 112 |
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48 27 48 1
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| 113 |
+
49 28 49 1
|
| 114 |
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50 29 50 1
|
| 115 |
+
51 30 51 1
|
| 116 |
+
@<TRIPOS>SUBSTRUCTURE
|
| 117 |
+
1 0ZB 1
|
| 118 |
+
|
1a86/1a86_ligand.sdf
ADDED
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@@ -0,0 +1,110 @@
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| 1 |
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1a86_ligand
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| 2 |
+
-I-interpret-
|
| 3 |
+
|
| 4 |
+
52 52 0 0 0 0 0 0 0 0999 V2000
|
| 5 |
+
25.1650 59.6390 53.3200 N 0 0 0 0 0
|
| 6 |
+
24.3590 58.8820 54.1730 O 0 0 0 0 0
|
| 7 |
+
26.3830 59.3710 53.7470 C 0 0 0 0 0
|
| 8 |
+
26.6800 58.2420 54.1830 O 0 0 0 0 0
|
| 9 |
+
27.4380 60.4370 53.3710 C 0 0 0 0 0
|
| 10 |
+
28.5690 60.5180 54.4160 C 0 0 0 0 0
|
| 11 |
+
28.4070 61.4390 55.6420 C 0 0 0 0 0
|
| 12 |
+
28.4010 62.8960 55.2200 C 0 0 0 0 0
|
| 13 |
+
27.1420 61.1310 56.4160 C 0 0 0 0 0
|
| 14 |
+
28.0190 60.3780 51.9550 C 0 0 0 0 0
|
| 15 |
+
27.9030 61.3360 51.1850 O 0 0 0 0 0
|
| 16 |
+
28.6190 59.2480 51.6030 N 0 0 0 0 0
|
| 17 |
+
29.1740 59.0960 50.2690 C 0 0 0 0 0
|
| 18 |
+
28.2140 58.2700 49.4040 C 0 0 0 0 0
|
| 19 |
+
28.5730 57.8160 48.3120 O 0 0 0 0 0
|
| 20 |
+
30.5550 58.4370 50.3320 C 0 0 0 0 0
|
| 21 |
+
31.3150 58.5460 49.0250 C 0 0 0 0 0
|
| 22 |
+
31.8390 59.6400 48.7240 O 0 0 0 0 0
|
| 23 |
+
31.3890 57.5330 48.3020 O 0 0 0 0 0
|
| 24 |
+
26.9940 58.0710 49.9020 N 0 0 0 0 0
|
| 25 |
+
25.9380 57.3280 49.2210 C 0 0 0 0 0
|
| 26 |
+
25.9320 55.8400 48.9830 C 0 0 0 0 0
|
| 27 |
+
26.7100 54.9850 49.7690 C 0 0 0 0 0
|
| 28 |
+
26.6820 53.5940 49.5770 C 0 0 0 0 0
|
| 29 |
+
25.1160 55.2830 47.9870 C 0 0 0 0 0
|
| 30 |
+
25.0800 53.9040 47.7880 C 0 0 0 0 0
|
| 31 |
+
25.8610 53.0490 48.5820 C 0 0 0 0 0
|
| 32 |
+
24.8808 60.2497 52.5541 H 0 0 0 0 0
|
| 33 |
+
23.4370 59.0116 53.9389 H 0 0 0 0 0
|
| 34 |
+
26.8522 61.3562 53.3759 H 0 0 0 0 0
|
| 35 |
+
29.4190 60.9295 53.8717 H 0 0 0 0 0
|
| 36 |
+
28.6330 59.5127 54.8323 H 0 0 0 0 0
|
| 37 |
+
29.2597 61.2533 56.2951 H 0 0 0 0 0
|
| 38 |
+
27.5331 63.0865 54.5887 H 0 0 0 0 0
|
| 39 |
+
28.3536 63.5293 56.1059 H 0 0 0 0 0
|
| 40 |
+
29.3120 63.1154 54.6633 H 0 0 0 0 0
|
| 41 |
+
27.0955 61.7656 57.3010 H 0 0 0 0 0
|
| 42 |
+
26.2750 61.3228 55.7838 H 0 0 0 0 0
|
| 43 |
+
27.1484 60.0838 56.7182 H 0 0 0 0 0
|
| 44 |
+
28.6909 58.4820 52.2726 H 0 0 0 0 0
|
| 45 |
+
29.2951 60.0811 49.8184 H 0 0 0 0 0
|
| 46 |
+
30.4113 57.3784 50.5484 H 0 0 0 0 0
|
| 47 |
+
31.1352 58.9482 51.1003 H 0 0 0 0 0
|
| 48 |
+
31.6607 60.2803 49.4167 H 0 0 0 0 0
|
| 49 |
+
26.7842 58.4638 50.8197 H 0 0 0 0 0
|
| 50 |
+
25.9977 57.7223 48.2066 H 0 0 0 0 0
|
| 51 |
+
25.0941 57.4552 49.8991 H 0 0 0 0 0
|
| 52 |
+
27.3499 55.4054 50.5448 H 0 0 0 0 0
|
| 53 |
+
27.2958 52.9424 50.1989 H 0 0 0 0 0
|
| 54 |
+
24.5045 55.9347 47.3630 H 0 0 0 0 0
|
| 55 |
+
24.4408 53.4862 47.0102 H 0 0 0 0 0
|
| 56 |
+
25.8286 51.9708 48.4253 H 0 0 0 0 0
|
| 57 |
+
3 1 1 0 0 0
|
| 58 |
+
1 2 1 0 0 0
|
| 59 |
+
5 3 1 0 0 0
|
| 60 |
+
3 4 2 0 0 0
|
| 61 |
+
10 5 1 0 0 0
|
| 62 |
+
5 6 1 0 0 0
|
| 63 |
+
6 7 1 0 0 0
|
| 64 |
+
7 9 1 0 0 0
|
| 65 |
+
7 8 1 0 0 0
|
| 66 |
+
10 11 2 0 0 0
|
| 67 |
+
14 13 1 0 0 0
|
| 68 |
+
13 16 1 0 0 0
|
| 69 |
+
13 12 1 0 0 0
|
| 70 |
+
16 17 1 0 0 0
|
| 71 |
+
17 18 1 0 0 0
|
| 72 |
+
17 19 2 0 0 0
|
| 73 |
+
14 15 2 0 0 0
|
| 74 |
+
20 21 1 0 0 0
|
| 75 |
+
21 22 1 0 0 0
|
| 76 |
+
22 25 4 0 0 0
|
| 77 |
+
22 23 4 0 0 0
|
| 78 |
+
23 24 4 0 0 0
|
| 79 |
+
24 27 4 0 0 0
|
| 80 |
+
26 27 4 0 0 0
|
| 81 |
+
25 26 4 0 0 0
|
| 82 |
+
12 10 1 0 0 0
|
| 83 |
+
14 20 1 0 0 0
|
| 84 |
+
1 28 1 0 0 0
|
| 85 |
+
2 29 1 0 0 0
|
| 86 |
+
5 30 1 0 0 0
|
| 87 |
+
6 31 1 0 0 0
|
| 88 |
+
6 32 1 0 0 0
|
| 89 |
+
7 33 1 0 0 0
|
| 90 |
+
8 34 1 0 0 0
|
| 91 |
+
8 35 1 0 0 0
|
| 92 |
+
8 36 1 0 0 0
|
| 93 |
+
9 37 1 0 0 0
|
| 94 |
+
9 38 1 0 0 0
|
| 95 |
+
9 39 1 0 0 0
|
| 96 |
+
12 40 1 0 0 0
|
| 97 |
+
13 41 1 0 0 0
|
| 98 |
+
16 42 1 0 0 0
|
| 99 |
+
16 43 1 0 0 0
|
| 100 |
+
18 44 1 0 0 0
|
| 101 |
+
20 45 1 0 0 0
|
| 102 |
+
21 46 1 0 0 0
|
| 103 |
+
21 47 1 0 0 0
|
| 104 |
+
23 48 1 0 0 0
|
| 105 |
+
24 49 1 0 0 0
|
| 106 |
+
25 50 1 0 0 0
|
| 107 |
+
26 51 1 0 0 0
|
| 108 |
+
27 52 1 0 0 0
|
| 109 |
+
M END
|
| 110 |
+
$$$$
|
1a86/1a86_protein_esmfold_aligned_tr_fix.pdb
ADDED
|
The diff for this file is too large to render.
See raw diff
|
|
|
1a86/1a86_protein_processed_fix.pdb
ADDED
|
The diff for this file is too large to render.
See raw diff
|
|
|
1dbb/1dbb_ligand.mol2
ADDED
|
@@ -0,0 +1,125 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
###
|
| 2 |
+
### Created by X-TOOL on Mon Sep 10 21:12:45 2018
|
| 3 |
+
###
|
| 4 |
+
|
| 5 |
+
@<TRIPOS>MOLECULE
|
| 6 |
+
1dbb_ligand
|
| 7 |
+
53 56 1 0 0
|
| 8 |
+
SMALL
|
| 9 |
+
GAST_HUCK
|
| 10 |
+
|
| 11 |
+
|
| 12 |
+
@<TRIPOS>ATOM
|
| 13 |
+
1 C1 -19.9120 42.8500 -15.1180 C.3 1 STR -0.0611
|
| 14 |
+
2 C2 -18.7140 42.2110 -15.7850 C.3 1 STR 0.0243
|
| 15 |
+
3 C3 -17.5580 43.1900 -15.5720 C.2 1 STR 0.1764
|
| 16 |
+
4 O3 -16.8370 43.6090 -16.5000 O.2 1 STR -0.3440
|
| 17 |
+
5 C4 -17.3070 43.5630 -14.2920 C.2 1 STR 0.0476
|
| 18 |
+
6 C5 -18.3340 43.5260 -13.3280 C.2 1 STR -0.0413
|
| 19 |
+
7 C6 -18.1250 43.8940 -11.8890 C.3 1 STR -0.0169
|
| 20 |
+
8 C7 -19.1200 44.8880 -11.5040 C.3 1 STR -0.0393
|
| 21 |
+
9 C8 -20.5190 44.4360 -11.7200 C.3 1 STR -0.0416
|
| 22 |
+
10 C9 -20.7390 44.1110 -13.1940 C.3 1 STR -0.0619
|
| 23 |
+
11 C10 -19.7460 43.0470 -13.6120 C.3 1 STR -0.0378
|
| 24 |
+
12 C11 -22.1270 43.6600 -13.4710 C.3 1 STR -0.0582
|
| 25 |
+
13 C12 -23.0710 44.6670 -12.9620 C.3 1 STR -0.0456
|
| 26 |
+
14 C13 -22.8880 45.1430 -11.4600 C.3 1 STR -0.0105
|
| 27 |
+
15 C14 -21.4660 45.5780 -11.3090 C.3 1 STR -0.0308
|
| 28 |
+
16 C15 -21.5600 46.3950 -10.0120 C.3 1 STR -0.0469
|
| 29 |
+
17 C16 -22.9710 46.9580 -9.9290 C.3 1 STR -0.0335
|
| 30 |
+
18 C17 -23.7580 46.3120 -11.0520 C.3 1 STR 0.0379
|
| 31 |
+
19 C18 -23.1280 44.0010 -10.4700 C.3 1 STR -0.0569
|
| 32 |
+
20 C19 -19.9500 41.6840 -12.9700 C.3 1 STR -0.0890
|
| 33 |
+
21 C20 -25.1940 46.1310 -10.7280 C.2 1 STR 0.1055
|
| 34 |
+
22 O20 -25.5790 46.0380 -9.5860 O.2 1 STR -0.3916
|
| 35 |
+
23 C21 -26.2210 46.1930 -11.7970 C.3 1 STR 0.0097
|
| 36 |
+
24 H1 -20.7883 42.2075 -15.2893 H 1 STR 0.0172
|
| 37 |
+
25 H2 -20.0826 43.8337 -15.5798 H 1 STR 0.0172
|
| 38 |
+
26 H3 -18.9031 42.0672 -16.8590 H 1 STR 0.0483
|
| 39 |
+
27 H4 -18.4868 41.2406 -15.3195 H 1 STR 0.0483
|
| 40 |
+
28 H5 -16.3084 43.8921 -14.0086 H 1 STR 0.1318
|
| 41 |
+
29 H6 -17.1161 44.3122 -11.7580 H 1 STR 0.0450
|
| 42 |
+
30 H7 -18.2354 42.9987 -11.2595 H 1 STR 0.0450
|
| 43 |
+
31 H8 -18.9519 45.7982 -12.0983 H 1 STR 0.0293
|
| 44 |
+
32 H9 -18.9886 45.1177 -10.4363 H 1 STR 0.0293
|
| 45 |
+
33 H10 -20.7205 43.5430 -11.1102 H 1 STR 0.0299
|
| 46 |
+
34 H11 -20.5517 45.0214 -13.7822 H 1 STR 0.0187
|
| 47 |
+
35 H12 -22.3088 42.6980 -12.9694 H 1 STR 0.0259
|
| 48 |
+
36 H13 -22.2658 43.5400 -14.5556 H 1 STR 0.0259
|
| 49 |
+
37 H14 -24.0835 44.2471 -13.0543 H 1 STR 0.0272
|
| 50 |
+
38 H15 -22.9829 45.5563 -13.6033 H 1 STR 0.0272
|
| 51 |
+
39 H16 -21.2573 46.3359 -12.0784 H 1 STR 0.0310
|
| 52 |
+
40 H17 -20.8283 47.2161 -10.0312 H 1 STR 0.0270
|
| 53 |
+
41 H18 -21.3621 45.7477 -9.1449 H 1 STR 0.0270
|
| 54 |
+
42 H19 -22.9526 48.0503 -10.0572 H 1 STR 0.0293
|
| 55 |
+
43 H20 -23.4226 46.7104 -8.9570 H 1 STR 0.0293
|
| 56 |
+
44 H21 -23.7575 47.0055 -11.9059 H 1 STR 0.0535
|
| 57 |
+
45 H22 -22.5045 43.1382 -10.7474 H 1 STR 0.0237
|
| 58 |
+
46 H23 -24.1886 43.7103 -10.4956 H 1 STR 0.0237
|
| 59 |
+
47 H24 -22.8633 44.3335 -9.4554 H 1 STR 0.0237
|
| 60 |
+
48 H25 -19.1823 40.9871 -13.3374 H 1 STR 0.0112
|
| 61 |
+
49 H26 -20.9477 41.3013 -13.2311 H 1 STR 0.0112
|
| 62 |
+
50 H27 -19.8675 41.7774 -11.8771 H 1 STR 0.0112
|
| 63 |
+
51 H28 -27.2172 46.0359 -11.3579 H 1 STR 0.0459
|
| 64 |
+
52 H29 -26.0215 45.4097 -12.5430 H 1 STR 0.0459
|
| 65 |
+
53 H30 -26.1858 47.1794 -12.2826 H 1 STR 0.0459
|
| 66 |
+
@<TRIPOS>BOND
|
| 67 |
+
1 1 2 1
|
| 68 |
+
2 1 11 1
|
| 69 |
+
3 2 3 1
|
| 70 |
+
4 3 4 2
|
| 71 |
+
5 3 5 1
|
| 72 |
+
6 5 6 2
|
| 73 |
+
7 6 7 1
|
| 74 |
+
8 6 11 1
|
| 75 |
+
9 7 8 1
|
| 76 |
+
10 8 9 1
|
| 77 |
+
11 9 10 1
|
| 78 |
+
12 9 15 1
|
| 79 |
+
13 10 11 1
|
| 80 |
+
14 10 12 1
|
| 81 |
+
15 11 20 1
|
| 82 |
+
16 12 13 1
|
| 83 |
+
17 13 14 1
|
| 84 |
+
18 14 15 1
|
| 85 |
+
19 14 18 1
|
| 86 |
+
20 14 19 1
|
| 87 |
+
21 15 16 1
|
| 88 |
+
22 16 17 1
|
| 89 |
+
23 17 18 1
|
| 90 |
+
24 18 21 1
|
| 91 |
+
25 21 22 2
|
| 92 |
+
26 21 23 1
|
| 93 |
+
27 1 24 1
|
| 94 |
+
28 1 25 1
|
| 95 |
+
29 2 26 1
|
| 96 |
+
30 2 27 1
|
| 97 |
+
31 5 28 1
|
| 98 |
+
32 7 29 1
|
| 99 |
+
33 7 30 1
|
| 100 |
+
34 8 31 1
|
| 101 |
+
35 8 32 1
|
| 102 |
+
36 9 33 1
|
| 103 |
+
37 10 34 1
|
| 104 |
+
38 12 35 1
|
| 105 |
+
39 12 36 1
|
| 106 |
+
40 13 37 1
|
| 107 |
+
41 13 38 1
|
| 108 |
+
42 15 39 1
|
| 109 |
+
43 16 40 1
|
| 110 |
+
44 16 41 1
|
| 111 |
+
45 17 42 1
|
| 112 |
+
46 17 43 1
|
| 113 |
+
47 18 44 1
|
| 114 |
+
48 19 45 1
|
| 115 |
+
49 19 46 1
|
| 116 |
+
50 19 47 1
|
| 117 |
+
51 20 48 1
|
| 118 |
+
52 20 49 1
|
| 119 |
+
53 20 50 1
|
| 120 |
+
54 23 51 1
|
| 121 |
+
55 23 52 1
|
| 122 |
+
56 23 53 1
|
| 123 |
+
@<TRIPOS>SUBSTRUCTURE
|
| 124 |
+
1 STR 1
|
| 125 |
+
|
1dbb/1dbb_ligand.sdf
ADDED
|
@@ -0,0 +1,115 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
1dbb_ligand
|
| 2 |
+
-I-interpret-
|
| 3 |
+
|
| 4 |
+
53 56 0 0 0 0 0 0 0 0999 V2000
|
| 5 |
+
-19.9120 42.8500 -15.1180 C 0 0 0 0 0
|
| 6 |
+
-18.7140 42.2110 -15.7850 C 0 0 0 0 0
|
| 7 |
+
-17.5580 43.1900 -15.5720 C 0 0 0 0 0
|
| 8 |
+
-16.8370 43.6090 -16.5000 O 0 0 0 0 0
|
| 9 |
+
-17.3070 43.5630 -14.2920 C 0 0 0 0 0
|
| 10 |
+
-18.3340 43.5260 -13.3280 C 0 0 0 0 0
|
| 11 |
+
-18.1250 43.8940 -11.8890 C 0 0 0 0 0
|
| 12 |
+
-19.1200 44.8880 -11.5040 C 0 0 0 0 0
|
| 13 |
+
-20.5190 44.4360 -11.7200 C 0 0 0 0 0
|
| 14 |
+
-20.7390 44.1110 -13.1940 C 0 0 0 0 0
|
| 15 |
+
-19.7460 43.0470 -13.6120 C 0 0 0 0 0
|
| 16 |
+
-22.1270 43.6600 -13.4710 C 0 0 0 0 0
|
| 17 |
+
-23.0710 44.6670 -12.9620 C 0 0 0 0 0
|
| 18 |
+
-22.8880 45.1430 -11.4600 C 0 0 0 0 0
|
| 19 |
+
-21.4660 45.5780 -11.3090 C 0 0 0 0 0
|
| 20 |
+
-21.5600 46.3950 -10.0120 C 0 0 0 0 0
|
| 21 |
+
-22.9710 46.9580 -9.9290 C 0 0 0 0 0
|
| 22 |
+
-23.7580 46.3120 -11.0520 C 0 0 0 0 0
|
| 23 |
+
-23.1280 44.0010 -10.4700 C 0 0 0 0 0
|
| 24 |
+
-19.9500 41.6840 -12.9700 C 0 0 0 0 0
|
| 25 |
+
-25.1940 46.1310 -10.7280 C 0 0 0 0 0
|
| 26 |
+
-25.5790 46.0380 -9.5860 O 0 0 0 0 0
|
| 27 |
+
-26.2210 46.1930 -11.7970 C 0 0 0 0 0
|
| 28 |
+
-20.7614 42.1835 -15.2673 H 0 0 0 0 0
|
| 29 |
+
-20.0442 43.8364 -15.5625 H 0 0 0 0 0
|
| 30 |
+
-18.8953 42.0311 -16.8447 H 0 0 0 0 0
|
| 31 |
+
-18.4932 41.2329 -15.3577 H 0 0 0 0 0
|
| 32 |
+
-16.3074 43.8924 -14.0083 H 0 0 0 0 0
|
| 33 |
+
-17.1242 44.3051 -11.7563 H 0 0 0 0 0
|
| 34 |
+
-18.2301 43.0073 -11.2638 H 0 0 0 0 0
|
| 35 |
+
-18.9602 45.7704 -12.1237 H 0 0 0 0 0
|
| 36 |
+
-18.9974 45.0802 -10.4381 H 0 0 0 0 0
|
| 37 |
+
-20.7142 43.5431 -11.1261 H 0 0 0 0 0
|
| 38 |
+
-20.5847 45.0218 -13.7725 H 0 0 0 0 0
|
| 39 |
+
-22.3078 42.7053 -12.9771 H 0 0 0 0 0
|
| 40 |
+
-22.2653 43.5377 -14.5453 H 0 0 0 0 0
|
| 41 |
+
-24.0540 44.1980 -13.0050 H 0 0 0 0 0
|
| 42 |
+
-22.9132 45.5550 -13.5740 H 0 0 0 0 0
|
| 43 |
+
-20.9228 46.2626 -11.9604 H 0 0 0 0 0
|
| 44 |
+
-20.8268 47.2016 -10.0150 H 0 0 0 0 0
|
| 45 |
+
-21.3490 45.7650 -9.1479 H 0 0 0 0 0
|
| 46 |
+
-22.9651 48.0433 -10.0303 H 0 0 0 0 0
|
| 47 |
+
-23.4219 46.7406 -8.9607 H 0 0 0 0 0
|
| 48 |
+
-23.9208 46.9175 -11.9436 H 0 0 0 0 0
|
| 49 |
+
-24.1443 43.6256 -10.5898 H 0 0 0 0 0
|
| 50 |
+
-22.4173 43.1978 -10.6646 H 0 0 0 0 0
|
| 51 |
+
-22.9928 44.3691 -9.4530 H 0 0 0 0 0
|
| 52 |
+
-19.8681 41.7779 -11.8871 H 0 0 0 0 0
|
| 53 |
+
-20.9389 41.3059 -13.2294 H 0 0 0 0 0
|
| 54 |
+
-19.1888 40.9944 -13.3348 H 0 0 0 0 0
|
| 55 |
+
-26.8265 45.2870 -11.7704 H 0 0 0 0 0
|
| 56 |
+
-26.8585 47.0624 -11.6366 H 0 0 0 0 0
|
| 57 |
+
-25.7298 46.2749 -12.7666 H 0 0 0 0 0
|
| 58 |
+
1 2 1 0 0 0
|
| 59 |
+
1 11 1 0 0 0
|
| 60 |
+
2 3 1 0 0 0
|
| 61 |
+
3 4 2 0 0 0
|
| 62 |
+
3 5 1 0 0 0
|
| 63 |
+
5 6 2 0 0 0
|
| 64 |
+
6 7 1 0 0 0
|
| 65 |
+
6 11 1 0 0 0
|
| 66 |
+
7 8 1 0 0 0
|
| 67 |
+
8 9 1 0 0 0
|
| 68 |
+
9 10 1 0 0 0
|
| 69 |
+
9 15 1 0 0 0
|
| 70 |
+
10 11 1 0 0 0
|
| 71 |
+
10 12 1 0 0 0
|
| 72 |
+
11 20 1 0 0 0
|
| 73 |
+
12 13 1 0 0 0
|
| 74 |
+
13 14 1 0 0 0
|
| 75 |
+
14 15 1 0 0 0
|
| 76 |
+
14 18 1 0 0 0
|
| 77 |
+
14 19 1 0 0 0
|
| 78 |
+
15 16 1 0 0 0
|
| 79 |
+
16 17 1 0 0 0
|
| 80 |
+
17 18 1 0 0 0
|
| 81 |
+
18 21 1 0 0 0
|
| 82 |
+
21 22 2 0 0 0
|
| 83 |
+
21 23 1 0 0 0
|
| 84 |
+
1 24 1 0 0 0
|
| 85 |
+
1 25 1 0 0 0
|
| 86 |
+
2 26 1 0 0 0
|
| 87 |
+
2 27 1 0 0 0
|
| 88 |
+
5 28 1 0 0 0
|
| 89 |
+
7 29 1 0 0 0
|
| 90 |
+
7 30 1 0 0 0
|
| 91 |
+
8 31 1 0 0 0
|
| 92 |
+
8 32 1 0 0 0
|
| 93 |
+
9 33 1 0 0 0
|
| 94 |
+
10 34 1 0 0 0
|
| 95 |
+
12 35 1 0 0 0
|
| 96 |
+
12 36 1 0 0 0
|
| 97 |
+
13 37 1 0 0 0
|
| 98 |
+
13 38 1 0 0 0
|
| 99 |
+
15 39 1 0 0 0
|
| 100 |
+
16 40 1 0 0 0
|
| 101 |
+
16 41 1 0 0 0
|
| 102 |
+
17 42 1 0 0 0
|
| 103 |
+
17 43 1 0 0 0
|
| 104 |
+
18 44 1 0 0 0
|
| 105 |
+
19 45 1 0 0 0
|
| 106 |
+
19 46 1 0 0 0
|
| 107 |
+
19 47 1 0 0 0
|
| 108 |
+
20 48 1 0 0 0
|
| 109 |
+
20 49 1 0 0 0
|
| 110 |
+
20 50 1 0 0 0
|
| 111 |
+
23 51 1 0 0 0
|
| 112 |
+
23 52 1 0 0 0
|
| 113 |
+
23 53 1 0 0 0
|
| 114 |
+
M END
|
| 115 |
+
$$$$
|
1dbb/1dbb_protein_esmfold_aligned_tr_fix.pdb
ADDED
|
The diff for this file is too large to render.
See raw diff
|
|
|
1dbb/1dbb_protein_processed_fix.pdb
ADDED
|
The diff for this file is too large to render.
See raw diff
|
|
|
1gx4/1gx4_ligand.mol2
ADDED
|
@@ -0,0 +1,89 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
###
|
| 2 |
+
### Created by X-TOOL on Mon Sep 10 21:12:49 2018
|
| 3 |
+
###
|
| 4 |
+
|
| 5 |
+
@<TRIPOS>MOLECULE
|
| 6 |
+
1gx4_ligand
|
| 7 |
+
36 37 1 0 0
|
| 8 |
+
SMALL
|
| 9 |
+
GAST_HUCK
|
| 10 |
+
|
| 11 |
+
|
| 12 |
+
@<TRIPOS>ATOM
|
| 13 |
+
1 N1 2.8570 13.5450 43.7050 N.am 1 UDP -0.1592
|
| 14 |
+
2 C2 2.9410 14.5360 42.7230 C.2 1 UDP 0.3328
|
| 15 |
+
3 N3 2.4770 15.8120 43.0410 N.am 1 UDP -0.1865
|
| 16 |
+
4 C4 1.8830 16.2000 44.2890 C.2 1 UDP 0.1822
|
| 17 |
+
5 C5 2.0190 15.2490 45.3610 C.2 1 UDP 0.0062
|
| 18 |
+
6 C6 2.3710 13.8480 45.0020 C.2 1 UDP 0.0591
|
| 19 |
+
7 O2 3.2310 14.2380 41.5600 O.2 1 UDP -0.3815
|
| 20 |
+
8 O4 1.7330 17.4050 44.4810 O.2 1 UDP -0.4124
|
| 21 |
+
9 C1 3.1820 12.1310 43.3030 C.3 1 UDP 0.2059
|
| 22 |
+
10 C2 4.6980 11.9230 43.0580 C.3 1 UDP 0.1387
|
| 23 |
+
11 O2 4.9520 10.8600 42.1330 O.3 1 UDP -0.3836
|
| 24 |
+
12 C3 5.1570 11.6640 44.4980 C.3 1 UDP 0.1149
|
| 25 |
+
13 C4 4.0610 10.6960 44.9940 C.3 1 UDP 0.1189
|
| 26 |
+
14 O4 2.8450 11.2210 44.3740 O.3 1 UDP -0.3363
|
| 27 |
+
15 O3 6.4590 11.0330 44.4440 O.3 1 UDP -0.3864
|
| 28 |
+
16 C5 3.8480 10.5980 46.5360 C.3 1 UDP 0.1132
|
| 29 |
+
17 O5 4.0820 11.8770 47.1480 O.3 1 UDP -0.2436
|
| 30 |
+
18 PA 5.4200 12.2320 47.9170 P.3 1 UDP 0.3276
|
| 31 |
+
19 O1A 6.5310 11.5280 47.2230 O.co2 1 UDP -0.5556
|
| 32 |
+
20 O2A 5.4870 13.7400 48.0450 O.co2 1 UDP -0.5556
|
| 33 |
+
21 O3A 5.2070 11.5720 49.3800 O.3 1 UDP -0.1548
|
| 34 |
+
22 PB 6.4120 11.2700 50.4490 P.3 1 UDP 0.2069
|
| 35 |
+
23 O1B 7.2260 10.0640 49.8780 O.co2 1 UDP -0.5891
|
| 36 |
+
24 O2B 5.6820 10.8650 51.6920 O.co2 1 UDP -0.5891
|
| 37 |
+
25 O3B 7.2660 12.5080 50.5190 O.co2 1 UDP -0.5891
|
| 38 |
+
26 H1 2.5658 16.5182 42.3386 H 1 UDP 0.2259
|
| 39 |
+
27 H2 1.8696 15.5443 46.3985 H 1 UDP 0.0258
|
| 40 |
+
28 H3 2.2549 13.0535 45.7376 H 1 UDP 0.1178
|
| 41 |
+
29 H4 2.6169 11.8789 42.3936 H 1 UDP 0.0997
|
| 42 |
+
30 H5 5.1658 12.8373 42.6641 H 1 UDP 0.0676
|
| 43 |
+
31 H6 4.5416 11.0615 41.3003 H 1 UDP 0.2101
|
| 44 |
+
32 H7 5.1975 12.5816 45.1033 H 1 UDP 0.0648
|
| 45 |
+
33 H8 4.2808 9.6854 44.6195 H 1 UDP 0.0651
|
| 46 |
+
34 H9 6.7003 10.7326 45.3124 H 1 UDP 0.2100
|
| 47 |
+
35 H10 4.5490 9.8607 46.9542 H 1 UDP 0.0648
|
| 48 |
+
36 H11 2.8153 10.2797 46.7414 H 1 UDP 0.0648
|
| 49 |
+
@<TRIPOS>BOND
|
| 50 |
+
1 1 2 am
|
| 51 |
+
2 1 6 am
|
| 52 |
+
3 1 9 1
|
| 53 |
+
4 2 3 am
|
| 54 |
+
5 2 7 2
|
| 55 |
+
6 3 4 am
|
| 56 |
+
7 4 5 1
|
| 57 |
+
8 4 8 2
|
| 58 |
+
9 5 6 2
|
| 59 |
+
10 9 10 1
|
| 60 |
+
11 9 14 1
|
| 61 |
+
12 10 11 1
|
| 62 |
+
13 10 12 1
|
| 63 |
+
14 12 13 1
|
| 64 |
+
15 12 15 1
|
| 65 |
+
16 13 14 1
|
| 66 |
+
17 13 16 1
|
| 67 |
+
18 16 17 1
|
| 68 |
+
19 17 18 1
|
| 69 |
+
20 18 19 ar
|
| 70 |
+
21 18 20 ar
|
| 71 |
+
22 18 21 1
|
| 72 |
+
23 21 22 1
|
| 73 |
+
24 22 23 ar
|
| 74 |
+
25 22 24 ar
|
| 75 |
+
26 22 25 ar
|
| 76 |
+
27 3 26 1
|
| 77 |
+
28 5 27 1
|
| 78 |
+
29 6 28 1
|
| 79 |
+
30 9 29 1
|
| 80 |
+
31 10 30 1
|
| 81 |
+
32 11 31 1
|
| 82 |
+
33 12 32 1
|
| 83 |
+
34 13 33 1
|
| 84 |
+
35 15 34 1
|
| 85 |
+
36 16 35 1
|
| 86 |
+
37 16 36 1
|
| 87 |
+
@<TRIPOS>SUBSTRUCTURE
|
| 88 |
+
1 UDP 1
|
| 89 |
+
|
1gx4/1gx4_ligand.sdf
ADDED
|
@@ -0,0 +1,85 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
1gx4_ligand
|
| 2 |
+
-I-interpret-
|
| 3 |
+
|
| 4 |
+
39 40 0 0 0 0 0 0 0 0999 V2000
|
| 5 |
+
2.8570 13.5450 43.7050 N 0 0 0 0 0
|
| 6 |
+
2.9410 14.5360 42.7230 C 0 0 0 0 0
|
| 7 |
+
2.4770 15.8120 43.0410 N 0 0 0 0 0
|
| 8 |
+
1.8830 16.2000 44.2890 C 0 0 0 0 0
|
| 9 |
+
2.0190 15.2490 45.3610 C 0 0 0 0 0
|
| 10 |
+
2.3710 13.8480 45.0020 C 0 0 0 0 0
|
| 11 |
+
3.2310 14.2380 41.5600 O 0 0 0 0 0
|
| 12 |
+
1.7330 17.4050 44.4810 O 0 0 0 0 0
|
| 13 |
+
3.1820 12.1310 43.3030 C 0 0 0 0 0
|
| 14 |
+
4.6980 11.9230 43.0580 C 0 0 0 0 0
|
| 15 |
+
4.9520 10.8600 42.1330 O 0 0 0 0 0
|
| 16 |
+
5.1570 11.6640 44.4980 C 0 0 0 0 0
|
| 17 |
+
4.0610 10.6960 44.9940 C 0 0 0 0 0
|
| 18 |
+
2.8450 11.2210 44.3740 O 0 0 0 0 0
|
| 19 |
+
6.4590 11.0330 44.4440 O 0 0 0 0 0
|
| 20 |
+
3.8480 10.5980 46.5360 C 0 0 0 0 0
|
| 21 |
+
4.0820 11.8770 47.1480 O 0 0 0 0 0
|
| 22 |
+
5.4200 12.2320 47.9170 P 0 0 0 0 0
|
| 23 |
+
6.5310 11.5280 47.2230 O 0 0 0 0 0
|
| 24 |
+
5.4870 13.7400 48.0450 O 0 0 0 0 0
|
| 25 |
+
5.2070 11.5720 49.3800 O 0 0 0 0 0
|
| 26 |
+
6.4120 11.2700 50.4490 P 0 0 0 0 0
|
| 27 |
+
7.2260 10.0640 49.8780 O 0 0 0 0 0
|
| 28 |
+
5.6820 10.8650 51.6920 O 0 0 0 0 0
|
| 29 |
+
7.2660 12.5080 50.5190 O 0 0 0 0 0
|
| 30 |
+
2.5675 16.5323 42.3245 H 0 0 0 0 0
|
| 31 |
+
1.8694 15.5445 46.3995 H 0 0 0 0 0
|
| 32 |
+
2.2548 13.0527 45.7383 H 0 0 0 0 0
|
| 33 |
+
2.6145 11.9430 42.3916 H 0 0 0 0 0
|
| 34 |
+
5.2292 12.7461 42.5801 H 0 0 0 0 0
|
| 35 |
+
5.8992 10.7644 42.0094 H 0 0 0 0 0
|
| 36 |
+
5.2645 12.5388 45.1392 H 0 0 0 0 0
|
| 37 |
+
4.3457 9.6786 44.7257 H 0 0 0 0 0
|
| 38 |
+
6.7672 10.8609 45.3367 H 0 0 0 0 0
|
| 39 |
+
4.5469 9.8703 46.9485 H 0 0 0 0 0
|
| 40 |
+
2.8228 10.2871 46.7369 H 0 0 0 0 0
|
| 41 |
+
4.7094 14.0553 48.5113 H 0 0 0 0 0
|
| 42 |
+
7.6877 10.3390 49.0825 H 0 0 0 0 0
|
| 43 |
+
7.6778 12.6600 49.6652 H 0 0 0 0 0
|
| 44 |
+
1 2 1 0 0 0
|
| 45 |
+
1 6 1 0 0 0
|
| 46 |
+
1 9 1 0 0 0
|
| 47 |
+
2 3 1 0 0 0
|
| 48 |
+
2 7 2 0 0 0
|
| 49 |
+
3 4 1 0 0 0
|
| 50 |
+
4 5 1 0 0 0
|
| 51 |
+
4 8 2 0 0 0
|
| 52 |
+
5 6 2 0 0 0
|
| 53 |
+
9 10 1 0 0 0
|
| 54 |
+
9 14 1 0 0 0
|
| 55 |
+
10 11 1 0 0 0
|
| 56 |
+
10 12 1 0 0 0
|
| 57 |
+
12 13 1 0 0 0
|
| 58 |
+
12 15 1 0 0 0
|
| 59 |
+
13 14 1 0 0 0
|
| 60 |
+
13 16 1 0 0 0
|
| 61 |
+
16 17 1 0 0 0
|
| 62 |
+
17 18 1 0 0 0
|
| 63 |
+
18 19 2 0 0 0
|
| 64 |
+
18 20 1 0 0 0
|
| 65 |
+
18 21 1 0 0 0
|
| 66 |
+
21 22 1 0 0 0
|
| 67 |
+
22 23 1 0 0 0
|
| 68 |
+
22 24 2 0 0 0
|
| 69 |
+
22 25 1 0 0 0
|
| 70 |
+
3 26 1 0 0 0
|
| 71 |
+
5 27 1 0 0 0
|
| 72 |
+
6 28 1 0 0 0
|
| 73 |
+
9 29 1 0 0 0
|
| 74 |
+
10 30 1 0 0 0
|
| 75 |
+
11 31 1 0 0 0
|
| 76 |
+
12 32 1 0 0 0
|
| 77 |
+
13 33 1 0 0 0
|
| 78 |
+
15 34 1 0 0 0
|
| 79 |
+
16 35 1 0 0 0
|
| 80 |
+
16 36 1 0 0 0
|
| 81 |
+
20 37 1 0 0 0
|
| 82 |
+
23 38 1 0 0 0
|
| 83 |
+
25 39 1 0 0 0
|
| 84 |
+
M END
|
| 85 |
+
$$$$
|
1gx4/1gx4_protein_esmfold_aligned_tr_fix.pdb
ADDED
|
The diff for this file is too large to render.
See raw diff
|
|
|
1gx4/1gx4_protein_processed_fix.pdb
ADDED
|
The diff for this file is too large to render.
See raw diff
|
|
|
1i2s/1i2s_ligand.mol2
ADDED
|
@@ -0,0 +1,51 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
###
|
| 2 |
+
### Created by X-TOOL on Mon Sep 10 21:12:49 2018
|
| 3 |
+
###
|
| 4 |
+
|
| 5 |
+
@<TRIPOS>MOLECULE
|
| 6 |
+
1i2s_ligand
|
| 7 |
+
18 17 1 0 0
|
| 8 |
+
SMALL
|
| 9 |
+
GAST_HUCK
|
| 10 |
+
|
| 11 |
+
|
| 12 |
+
@<TRIPOS>ATOM
|
| 13 |
+
1 C1 24.9790 -4.7030 12.9270 C.2 1 CIT 0.0371
|
| 14 |
+
2 O1 23.8350 -4.3210 13.6680 O.co2 1 CIT -0.5690
|
| 15 |
+
3 O2 25.5880 -3.8930 12.1800 O.co2 1 CIT -0.5690
|
| 16 |
+
4 C2 25.3520 -6.2090 13.1670 C.3 1 CIT 0.0356
|
| 17 |
+
5 C3 26.2260 -6.3710 14.4710 C.3 1 CIT 0.1328
|
| 18 |
+
6 O7 27.4960 -5.7060 14.2300 O.3 1 CIT -0.3818
|
| 19 |
+
7 C4 26.4080 -7.9180 14.7860 C.3 1 CIT 0.0356
|
| 20 |
+
8 C5 27.0150 -8.1090 16.2380 C.2 1 CIT 0.0371
|
| 21 |
+
9 O3 27.4180 -7.1790 17.0030 O.co2 1 CIT -0.5690
|
| 22 |
+
10 O4 27.0780 -9.4750 16.6260 O.co2 1 CIT -0.5690
|
| 23 |
+
11 C6 25.5230 -5.6980 15.7250 C.2 1 CIT 0.0796
|
| 24 |
+
12 O5 25.9130 -4.6430 16.2870 O.co2 1 CIT -0.5449
|
| 25 |
+
13 O6 24.3840 -6.4300 16.1620 O.co2 1 CIT -0.5449
|
| 26 |
+
14 H1 25.9219 -6.5812 12.3029 H 1 CIT 0.0452
|
| 27 |
+
15 H2 24.4282 -6.7958 13.2773 H 1 CIT 0.0452
|
| 28 |
+
16 H3 28.0458 -5.7869 15.0005 H 1 CIT 0.2091
|
| 29 |
+
17 H4 27.0889 -8.3627 14.0454 H 1 CIT 0.0452
|
| 30 |
+
18 H5 25.4298 -8.4182 14.7317 H 1 CIT 0.0452
|
| 31 |
+
@<TRIPOS>BOND
|
| 32 |
+
1 1 2 ar
|
| 33 |
+
2 1 3 ar
|
| 34 |
+
3 1 4 1
|
| 35 |
+
4 4 5 1
|
| 36 |
+
5 5 6 1
|
| 37 |
+
6 5 7 1
|
| 38 |
+
7 5 11 1
|
| 39 |
+
8 7 8 1
|
| 40 |
+
9 8 9 ar
|
| 41 |
+
10 8 10 ar
|
| 42 |
+
11 11 12 ar
|
| 43 |
+
12 11 13 ar
|
| 44 |
+
13 4 14 1
|
| 45 |
+
14 4 15 1
|
| 46 |
+
15 6 16 1
|
| 47 |
+
16 7 17 1
|
| 48 |
+
17 7 18 1
|
| 49 |
+
@<TRIPOS>SUBSTRUCTURE
|
| 50 |
+
1 CIT 1
|
| 51 |
+
|
1i2s/1i2s_ligand.sdf
ADDED
|
@@ -0,0 +1,47 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
1i2s_ligand
|
| 2 |
+
-I-interpret-
|
| 3 |
+
|
| 4 |
+
21 20 0 0 0 0 0 0 0 0999 V2000
|
| 5 |
+
24.9790 -4.7030 12.9270 C 0 0 0 0 0
|
| 6 |
+
23.8350 -4.3210 13.6680 O 0 0 0 0 0
|
| 7 |
+
25.5880 -3.8930 12.1800 O 0 0 0 0 0
|
| 8 |
+
25.3520 -6.2090 13.1670 C 0 0 0 0 0
|
| 9 |
+
26.2260 -6.3710 14.4710 C 0 0 0 0 0
|
| 10 |
+
27.4960 -5.7060 14.2300 O 0 0 0 0 0
|
| 11 |
+
26.4080 -7.9180 14.7860 C 0 0 0 0 0
|
| 12 |
+
27.0150 -8.1090 16.2380 C 0 0 0 0 0
|
| 13 |
+
27.4180 -7.1790 17.0030 O 0 0 0 0 0
|
| 14 |
+
27.0780 -9.4750 16.6260 O 0 0 0 0 0
|
| 15 |
+
25.5230 -5.6980 15.7250 C 0 0 0 0 0
|
| 16 |
+
25.9130 -4.6430 16.2870 O 0 0 0 0 0
|
| 17 |
+
24.3840 -6.4300 16.1620 O 0 0 0 0 0
|
| 18 |
+
23.5164 -5.0728 14.1729 H 0 0 0 0 0
|
| 19 |
+
25.9261 -6.5686 12.3130 H 0 0 0 0 0
|
| 20 |
+
24.4332 -6.7831 13.2869 H 0 0 0 0 0
|
| 21 |
+
27.3395 -4.7772 14.0446 H 0 0 0 0 0
|
| 22 |
+
27.0866 -8.3553 14.0536 H 0 0 0 0 0
|
| 23 |
+
25.4369 -8.4104 14.7361 H 0 0 0 0 0
|
| 24 |
+
26.7296 -10.0236 15.9194 H 0 0 0 0 0
|
| 25 |
+
24.2628 -7.1976 15.5984 H 0 0 0 0 0
|
| 26 |
+
1 2 1 0 0 0
|
| 27 |
+
1 3 2 0 0 0
|
| 28 |
+
1 4 1 0 0 0
|
| 29 |
+
4 5 1 0 0 0
|
| 30 |
+
5 6 1 0 0 0
|
| 31 |
+
5 7 1 0 0 0
|
| 32 |
+
5 11 1 0 0 0
|
| 33 |
+
7 8 1 0 0 0
|
| 34 |
+
8 9 2 0 0 0
|
| 35 |
+
8 10 1 0 0 0
|
| 36 |
+
11 12 2 0 0 0
|
| 37 |
+
11 13 1 0 0 0
|
| 38 |
+
2 14 1 0 0 0
|
| 39 |
+
4 15 1 0 0 0
|
| 40 |
+
4 16 1 0 0 0
|
| 41 |
+
6 17 1 0 0 0
|
| 42 |
+
7 18 1 0 0 0
|
| 43 |
+
7 19 1 0 0 0
|
| 44 |
+
10 20 1 0 0 0
|
| 45 |
+
13 21 1 0 0 0
|
| 46 |
+
M END
|
| 47 |
+
$$$$
|
1i2s/1i2s_protein_esmfold_aligned_tr_fix.pdb
ADDED
|
The diff for this file is too large to render.
See raw diff
|
|
|
1i2s/1i2s_protein_processed_fix.pdb
ADDED
|
The diff for this file is too large to render.
See raw diff
|
|
|
1lvc/1lvc_ligand.mol2
ADDED
|
@@ -0,0 +1,131 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
###
|
| 2 |
+
### Created by X-TOOL on Mon Sep 10 21:12:49 2018
|
| 3 |
+
###
|
| 4 |
+
|
| 5 |
+
@<TRIPOS>MOLECULE
|
| 6 |
+
1lvc_ligand
|
| 7 |
+
56 59 1 0 0
|
| 8 |
+
SMALL
|
| 9 |
+
GAST_HUCK
|
| 10 |
+
|
| 11 |
+
|
| 12 |
+
@<TRIPOS>ATOM
|
| 13 |
+
1 PG 31.4900 73.6950 44.6360 P.3 1 DOT 0.1879
|
| 14 |
+
2 O1G 30.8650 74.4300 43.5190 O.co2 1 DOT -0.6091
|
| 15 |
+
3 O2G 30.6500 73.8250 45.8280 O.co2 1 DOT -0.6091
|
| 16 |
+
4 O3G 32.9080 74.2550 44.9580 O.co2 1 DOT -0.6091
|
| 17 |
+
5 PB 32.8880 71.4180 43.1340 P.3 1 DOT 0.3553
|
| 18 |
+
6 O1B 32.2820 70.8570 41.9790 O.co2 1 DOT -0.5652
|
| 19 |
+
7 O2B 33.9960 72.5060 42.8730 O.co2 1 DOT -0.5652
|
| 20 |
+
8 O3B 31.6960 72.0060 44.1250 O.3 1 DOT -0.1546
|
| 21 |
+
9 PA 34.6900 69.0860 43.9040 P.3 1 DOT 0.3266
|
| 22 |
+
10 O1A 35.9580 69.7210 43.1220 O.co2 1 DOT -0.5692
|
| 23 |
+
11 O2A 34.7020 68.3190 45.2400 O.co2 1 DOT -0.5692
|
| 24 |
+
12 O3A 33.5480 70.1900 44.1660 O.3 1 DOT -0.1171
|
| 25 |
+
13 O5 34.2560 68.0430 42.7200 O.3 1 DOT -0.2441
|
| 26 |
+
14 C5 33.0710 67.3710 42.9100 C.3 1 DOT 0.1134
|
| 27 |
+
15 C4 33.0710 66.0490 42.0260 C.3 1 DOT 0.1208
|
| 28 |
+
16 O4 34.1890 66.2630 41.0990 O.3 1 DOT -0.3385
|
| 29 |
+
17 C3 33.3750 64.6040 42.7150 C.3 1 DOT 0.1199
|
| 30 |
+
18 O3 32.3010 63.5210 42.6580 O.3 1 DOT -0.2735
|
| 31 |
+
19 C2 34.6730 64.2950 42.2310 C.3 1 DOT 0.0360
|
| 32 |
+
20 C1 35.0110 65.1610 41.0060 C.3 1 DOT 0.1755
|
| 33 |
+
21 N9 36.4470 65.6780 40.6600 N.pl3 1 DOT -0.1945
|
| 34 |
+
22 C8 37.0190 66.9760 40.3430 C.2 1 DOT 0.1122
|
| 35 |
+
23 N7 38.4470 67.0110 40.0430 N.2 1 DOT -0.2958
|
| 36 |
+
24 C5 38.7540 65.6690 40.1650 C.ar 1 DOT 0.1045
|
| 37 |
+
25 C6 40.0020 64.9900 39.8100 C.ar 1 DOT 0.1298
|
| 38 |
+
26 N6 40.6300 65.0810 38.6120 N.pl3 1 DOT -0.3152
|
| 39 |
+
27 N1 39.9890 63.5910 40.0940 N.ar 1 DOT -0.2698
|
| 40 |
+
28 C2 38.7890 62.9680 40.5530 C.ar 1 DOT 0.0533
|
| 41 |
+
29 N3 37.5320 63.4920 40.7800 N.ar 1 DOT -0.2714
|
| 42 |
+
30 C4 37.5740 64.8400 40.5570 C.ar 1 DOT 0.1612
|
| 43 |
+
31 C' 31.4370 63.1880 43.7170 C.2 1 DOT 0.2549
|
| 44 |
+
32 O1' 32.0050 62.2440 44.3720 O.2 1 DOT -0.3648
|
| 45 |
+
33 C1' 29.8920 63.0530 43.5740 C.ar 1 DOT 0.0787
|
| 46 |
+
34 C2' 29.3430 62.6370 45.1260 C.ar 1 DOT 0.0583
|
| 47 |
+
35 N2' 30.3690 61.7500 45.2580 N.pl3 1 DOT -0.3322
|
| 48 |
+
36 C3' 28.1210 63.8750 45.1610 C.ar 1 DOT -0.0380
|
| 49 |
+
37 C4' 27.6840 64.9000 44.2320 C.ar 1 DOT -0.0689
|
| 50 |
+
38 C5' 28.3200 65.0110 42.8880 C.ar 1 DOT -0.0690
|
| 51 |
+
39 C6' 29.3880 64.0480 42.5740 C.ar 1 DOT -0.0520
|
| 52 |
+
40 H1 32.2310 68.0144 42.6093 H 1 DOT 0.0648
|
| 53 |
+
41 H2 32.9661 67.1034 43.9718 H 1 DOT 0.0648
|
| 54 |
+
42 H3 32.1092 65.9827 41.4963 H 1 DOT 0.0654
|
| 55 |
+
43 H4 33.4845 64.7943 43.7929 H 1 DOT 0.0676
|
| 56 |
+
44 H5 34.7096 63.2335 41.9451 H 1 DOT 0.0348
|
| 57 |
+
45 H6 35.4104 64.4867 43.0244 H 1 DOT 0.0348
|
| 58 |
+
46 H7 34.7062 64.5635 40.1342 H 1 DOT 0.0969
|
| 59 |
+
47 H8 36.4111 67.8794 40.3299 H 1 DOT 0.1349
|
| 60 |
+
48 H9 41.5074 64.5664 38.4501 H 1 DOT 0.1820
|
| 61 |
+
49 H10 40.2297 65.6647 37.8637 H 1 DOT 0.1820
|
| 62 |
+
50 H11 38.8801 61.9073 40.7572 H 1 DOT 0.0996
|
| 63 |
+
51 H12 30.4653 61.1989 46.1228 H 1 DOT 0.1746
|
| 64 |
+
52 H13 31.0482 61.6307 44.4930 H 1 DOT 0.1746
|
| 65 |
+
53 H14 27.5583 63.8820 46.0875 H 1 DOT 0.0529
|
| 66 |
+
54 H15 26.8940 65.5861 44.5153 H 1 DOT 0.0621
|
| 67 |
+
55 H16 28.0101 65.7663 42.1748 H 1 DOT 0.0519
|
| 68 |
+
56 H17 29.8260 64.0592 41.5825 H 1 DOT 0.0637
|
| 69 |
+
@<TRIPOS>BOND
|
| 70 |
+
1 1 2 ar
|
| 71 |
+
2 1 3 ar
|
| 72 |
+
3 1 4 ar
|
| 73 |
+
4 8 1 1
|
| 74 |
+
5 5 6 ar
|
| 75 |
+
6 5 7 ar
|
| 76 |
+
7 5 8 1
|
| 77 |
+
8 12 5 1
|
| 78 |
+
9 9 10 ar
|
| 79 |
+
10 9 11 ar
|
| 80 |
+
11 9 12 1
|
| 81 |
+
12 9 13 1
|
| 82 |
+
13 13 14 1
|
| 83 |
+
14 14 15 1
|
| 84 |
+
15 15 16 1
|
| 85 |
+
16 15 17 1
|
| 86 |
+
17 16 20 1
|
| 87 |
+
18 17 18 1
|
| 88 |
+
19 17 19 1
|
| 89 |
+
20 18 31 1
|
| 90 |
+
21 19 20 1
|
| 91 |
+
22 20 21 1
|
| 92 |
+
23 21 22 1
|
| 93 |
+
24 21 30 1
|
| 94 |
+
25 22 23 2
|
| 95 |
+
26 23 24 1
|
| 96 |
+
27 24 25 ar
|
| 97 |
+
28 24 30 ar
|
| 98 |
+
29 25 26 1
|
| 99 |
+
30 25 27 ar
|
| 100 |
+
31 27 28 ar
|
| 101 |
+
32 28 29 ar
|
| 102 |
+
33 29 30 ar
|
| 103 |
+
34 31 32 2
|
| 104 |
+
35 31 33 1
|
| 105 |
+
36 33 34 ar
|
| 106 |
+
37 33 39 ar
|
| 107 |
+
38 34 35 1
|
| 108 |
+
39 34 36 ar
|
| 109 |
+
40 36 37 ar
|
| 110 |
+
41 37 38 ar
|
| 111 |
+
42 38 39 ar
|
| 112 |
+
43 14 40 1
|
| 113 |
+
44 14 41 1
|
| 114 |
+
45 15 42 1
|
| 115 |
+
46 17 43 1
|
| 116 |
+
47 19 44 1
|
| 117 |
+
48 19 45 1
|
| 118 |
+
49 20 46 1
|
| 119 |
+
50 22 47 1
|
| 120 |
+
51 26 48 1
|
| 121 |
+
52 26 49 1
|
| 122 |
+
53 28 50 1
|
| 123 |
+
54 35 51 1
|
| 124 |
+
55 35 52 1
|
| 125 |
+
56 36 53 1
|
| 126 |
+
57 37 54 1
|
| 127 |
+
58 38 55 1
|
| 128 |
+
59 39 56 1
|
| 129 |
+
@<TRIPOS>SUBSTRUCTURE
|
| 130 |
+
1 DOT 1
|
| 131 |
+
|
1lvc/1lvc_ligand.sdf
ADDED
|
@@ -0,0 +1,129 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
1lvc_ligand
|
| 2 |
+
-I-interpret-
|
| 3 |
+
|
| 4 |
+
60 63 0 0 0 0 0 0 0 0999 V2000
|
| 5 |
+
31.4900 73.6950 44.6360 P 0 0 0 0 0
|
| 6 |
+
30.8650 74.4300 43.5190 O 0 0 0 0 0
|
| 7 |
+
30.6500 73.8250 45.8280 O 0 0 0 0 0
|
| 8 |
+
32.9080 74.2550 44.9580 O 0 0 0 0 0
|
| 9 |
+
32.8880 71.4180 43.1340 P 0 0 0 0 0
|
| 10 |
+
32.2820 70.8570 41.9790 O 0 0 0 0 0
|
| 11 |
+
33.9960 72.5060 42.8730 O 0 0 0 0 0
|
| 12 |
+
31.6960 72.0060 44.1250 O 0 0 0 0 0
|
| 13 |
+
34.6900 69.0860 43.9040 P 0 0 0 0 0
|
| 14 |
+
35.9580 69.7210 43.1220 O 0 0 0 0 0
|
| 15 |
+
34.7020 68.3190 45.2400 O 0 0 0 0 0
|
| 16 |
+
33.5480 70.1900 44.1660 O 0 0 0 0 0
|
| 17 |
+
34.2560 68.0430 42.7200 O 0 0 0 0 0
|
| 18 |
+
33.0710 67.3710 42.9100 C 0 0 0 0 0
|
| 19 |
+
33.0710 66.0490 42.0260 C 0 0 0 0 0
|
| 20 |
+
34.1890 66.2630 41.0990 O 0 0 0 0 0
|
| 21 |
+
33.3750 64.6040 42.7150 C 0 0 0 0 0
|
| 22 |
+
32.3010 63.5210 42.6580 O 0 0 0 0 0
|
| 23 |
+
34.6730 64.2950 42.2310 C 0 0 0 0 0
|
| 24 |
+
35.0110 65.1610 41.0060 C 0 0 0 0 0
|
| 25 |
+
36.4470 65.6780 40.6600 N 0 0 0 0 0
|
| 26 |
+
37.0190 66.9760 40.3430 C 0 0 0 0 0
|
| 27 |
+
38.4470 67.0110 40.0430 N 0 0 0 0 0
|
| 28 |
+
38.7540 65.6690 40.1650 C 0 0 0 0 0
|
| 29 |
+
40.0020 64.9900 39.8100 C 0 0 0 0 0
|
| 30 |
+
40.6300 65.0810 38.6120 N 0 0 0 0 0
|
| 31 |
+
39.9890 63.5910 40.0940 N 0 0 0 0 0
|
| 32 |
+
38.7890 62.9680 40.5530 C 0 0 0 0 0
|
| 33 |
+
37.5320 63.4920 40.7800 N 0 0 0 0 0
|
| 34 |
+
37.5740 64.8400 40.5570 C 0 0 0 0 0
|
| 35 |
+
31.4370 63.1880 43.7170 C 0 0 0 0 0
|
| 36 |
+
32.0050 62.2440 44.3720 O 0 0 0 0 0
|
| 37 |
+
29.8920 63.0530 43.5740 C 0 0 0 0 0
|
| 38 |
+
29.3430 62.6370 45.1260 C 0 0 0 0 0
|
| 39 |
+
30.3690 61.7500 45.2580 N 0 0 0 0 0
|
| 40 |
+
28.1210 63.8750 45.1610 C 0 0 0 0 0
|
| 41 |
+
27.6840 64.9000 44.2320 C 0 0 0 0 0
|
| 42 |
+
28.3200 65.0110 42.8880 C 0 0 0 0 0
|
| 43 |
+
29.3880 64.0480 42.5740 C 0 0 0 0 0
|
| 44 |
+
31.4137 74.3466 42.7357 H 0 0 0 0 0
|
| 45 |
+
33.4667 74.1740 44.1815 H 0 0 0 0 0
|
| 46 |
+
34.3395 72.8192 43.7130 H 0 0 0 0 0
|
| 47 |
+
35.6560 70.1420 42.3138 H 0 0 0 0 0
|
| 48 |
+
32.2378 68.0085 42.6142 H 0 0 0 0 0
|
| 49 |
+
32.9651 67.1071 43.9623 H 0 0 0 0 0
|
| 50 |
+
32.0515 65.9520 41.6527 H 0 0 0 0 0
|
| 51 |
+
33.3420 64.6590 43.8031 H 0 0 0 0 0
|
| 52 |
+
34.7022 63.2446 41.9412 H 0 0 0 0 0
|
| 53 |
+
35.4010 64.4942 43.0174 H 0 0 0 0 0
|
| 54 |
+
34.8831 64.4451 40.1941 H 0 0 0 0 0
|
| 55 |
+
36.4105 67.8803 40.3299 H 0 0 0 0 0
|
| 56 |
+
40.2336 65.6591 37.8710 H 0 0 0 0 0
|
| 57 |
+
41.4989 64.5714 38.4517 H 0 0 0 0 0
|
| 58 |
+
38.8806 61.9014 40.7583 H 0 0 0 0 0
|
| 59 |
+
31.0416 61.6318 44.5004 H 0 0 0 0 0
|
| 60 |
+
30.4643 61.2042 46.1144 H 0 0 0 0 0
|
| 61 |
+
27.5552 63.8821 46.0926 H 0 0 0 0 0
|
| 62 |
+
26.8897 65.5899 44.5169 H 0 0 0 0 0
|
| 63 |
+
28.0084 65.7704 42.1709 H 0 0 0 0 0
|
| 64 |
+
29.8284 64.0593 41.5770 H 0 0 0 0 0
|
| 65 |
+
1 2 1 0 0 0
|
| 66 |
+
1 3 2 0 0 0
|
| 67 |
+
1 4 1 0 0 0
|
| 68 |
+
8 1 1 0 0 0
|
| 69 |
+
5 6 2 0 0 0
|
| 70 |
+
5 7 1 0 0 0
|
| 71 |
+
5 8 1 0 0 0
|
| 72 |
+
12 5 1 0 0 0
|
| 73 |
+
9 10 1 0 0 0
|
| 74 |
+
9 11 2 0 0 0
|
| 75 |
+
9 12 1 0 0 0
|
| 76 |
+
9 13 1 0 0 0
|
| 77 |
+
13 14 1 0 0 0
|
| 78 |
+
14 15 1 0 0 0
|
| 79 |
+
15 16 1 0 0 0
|
| 80 |
+
15 17 1 0 0 0
|
| 81 |
+
16 20 1 0 0 0
|
| 82 |
+
17 18 1 0 0 0
|
| 83 |
+
17 19 1 0 0 0
|
| 84 |
+
18 31 1 0 0 0
|
| 85 |
+
19 20 1 0 0 0
|
| 86 |
+
20 21 1 0 0 0
|
| 87 |
+
21 22 4 0 0 0
|
| 88 |
+
21 30 4 0 0 0
|
| 89 |
+
22 23 4 0 0 0
|
| 90 |
+
23 24 4 0 0 0
|
| 91 |
+
24 25 4 0 0 0
|
| 92 |
+
24 30 4 0 0 0
|
| 93 |
+
25 26 1 0 0 0
|
| 94 |
+
25 27 4 0 0 0
|
| 95 |
+
27 28 4 0 0 0
|
| 96 |
+
28 29 4 0 0 0
|
| 97 |
+
29 30 4 0 0 0
|
| 98 |
+
31 32 2 0 0 0
|
| 99 |
+
31 33 1 0 0 0
|
| 100 |
+
33 34 4 0 0 0
|
| 101 |
+
33 39 4 0 0 0
|
| 102 |
+
34 35 1 0 0 0
|
| 103 |
+
34 36 4 0 0 0
|
| 104 |
+
36 37 4 0 0 0
|
| 105 |
+
37 38 4 0 0 0
|
| 106 |
+
38 39 4 0 0 0
|
| 107 |
+
2 40 1 0 0 0
|
| 108 |
+
4 41 1 0 0 0
|
| 109 |
+
7 42 1 0 0 0
|
| 110 |
+
10 43 1 0 0 0
|
| 111 |
+
14 44 1 0 0 0
|
| 112 |
+
14 45 1 0 0 0
|
| 113 |
+
15 46 1 0 0 0
|
| 114 |
+
17 47 1 0 0 0
|
| 115 |
+
19 48 1 0 0 0
|
| 116 |
+
19 49 1 0 0 0
|
| 117 |
+
20 50 1 0 0 0
|
| 118 |
+
22 51 1 0 0 0
|
| 119 |
+
26 52 1 0 0 0
|
| 120 |
+
26 53 1 0 0 0
|
| 121 |
+
28 54 1 0 0 0
|
| 122 |
+
35 55 1 0 0 0
|
| 123 |
+
35 56 1 0 0 0
|
| 124 |
+
36 57 1 0 0 0
|
| 125 |
+
37 58 1 0 0 0
|
| 126 |
+
38 59 1 0 0 0
|
| 127 |
+
39 60 1 0 0 0
|
| 128 |
+
M END
|
| 129 |
+
$$$$
|
1lvc/1lvc_protein_esmfold_aligned_tr_fix.pdb
ADDED
|
The diff for this file is too large to render.
See raw diff
|
|
|
1lvc/1lvc_protein_processed_fix.pdb
ADDED
|
The diff for this file is too large to render.
See raw diff
|
|
|
1mrs/1mrs_ligand.mol2
ADDED
|
@@ -0,0 +1,87 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
###
|
| 2 |
+
### Created by X-TOOL on Mon Sep 10 21:12:50 2018
|
| 3 |
+
###
|
| 4 |
+
|
| 5 |
+
@<TRIPOS>MOLECULE
|
| 6 |
+
1mrs_ligand
|
| 7 |
+
35 36 1 0 0
|
| 8 |
+
SMALL
|
| 9 |
+
GAST_HUCK
|
| 10 |
+
|
| 11 |
+
|
| 12 |
+
@<TRIPOS>ATOM
|
| 13 |
+
1 P 26.4290 15.2810 8.3730 P.3 1 5HU 0.2008
|
| 14 |
+
2 O1P 27.4210 14.8400 9.5550 O.co2 1 5HU -0.5537
|
| 15 |
+
3 O2P 25.5450 16.6390 8.8350 O.co2 1 5HU -0.5537
|
| 16 |
+
4 O3P 27.2720 15.6440 6.9850 O.co2 1 5HU -0.5537
|
| 17 |
+
5 O5' 25.3510 14.1790 8.1290 O.3 1 5HU -0.2734
|
| 18 |
+
6 C5' 25.3440 13.0540 7.3450 C.3 1 5HU 0.1071
|
| 19 |
+
7 C4' 23.9370 12.4280 7.5210 C.3 1 5HU 0.1156
|
| 20 |
+
8 O4' 23.8310 11.0130 7.7110 O.3 1 5HU -0.3395
|
| 21 |
+
9 C3' 22.9490 12.8970 8.6520 C.3 1 5HU 0.0889
|
| 22 |
+
10 O3' 21.4840 13.1190 8.4360 O.3 1 5HU -0.3890
|
| 23 |
+
11 C2' 23.5020 11.9320 9.7490 C.3 1 5HU 0.0308
|
| 24 |
+
12 C1' 23.5510 10.6290 9.0420 C.3 1 5HU 0.1757
|
| 25 |
+
13 N1 24.5820 9.6320 9.3830 N.am 1 5HU -0.1735
|
| 26 |
+
14 C2 24.0980 8.3690 9.6460 C.2 1 5HU 0.3265
|
| 27 |
+
15 O2 22.8300 8.1360 9.5760 O.2 1 5HU -0.3843
|
| 28 |
+
16 N3 24.9180 7.3630 9.9780 N.am 1 5HU -0.1859
|
| 29 |
+
17 C4 26.2480 7.5750 10.0590 C.2 1 5HU 0.1954
|
| 30 |
+
18 O4 27.0210 6.5500 10.3930 O.2 1 5HU -0.4078
|
| 31 |
+
19 C5 26.8010 8.8510 9.7950 C.2 1 5HU 0.0506
|
| 32 |
+
20 C5A 28.2830 9.0410 9.8900 C.3 1 5HU 0.0664
|
| 33 |
+
21 C6 25.9230 9.8800 9.4540 C.2 1 5HU 0.0549
|
| 34 |
+
22 O5B 28.6390 8.8530 8.9170 O.3 1 5HU -0.3905
|
| 35 |
+
23 H1 26.1211 12.3501 7.6775 H 1 5HU 0.0639
|
| 36 |
+
24 H2 25.5163 13.3197 6.2916 H 1 5HU 0.0639
|
| 37 |
+
25 H3 23.4469 12.6628 6.5646 H 1 5HU 0.0649
|
| 38 |
+
26 H4 23.2753 13.9074 8.9392 H 1 5HU 0.0622
|
| 39 |
+
27 H5 21.3606 13.7901 7.7750 H 1 5HU 0.2099
|
| 40 |
+
28 H6 22.8262 11.8878 10.6158 H 1 5HU 0.0344
|
| 41 |
+
29 H7 24.5041 12.2412 10.0808 H 1 5HU 0.0344
|
| 42 |
+
30 H8 22.5667 10.1457 9.1290 H 1 5HU 0.0959
|
| 43 |
+
31 H9 24.5442 6.4547 10.1658 H 1 5HU 0.2259
|
| 44 |
+
32 H10 28.7201 8.3306 10.6071 H 1 5HU 0.0624
|
| 45 |
+
33 H11 28.5234 10.0689 10.1992 H 1 5HU 0.0624
|
| 46 |
+
34 H12 26.3058 10.8779 9.2451 H 1 5HU 0.1012
|
| 47 |
+
35 H13 29.5833 8.9561 8.9011 H 1 5HU 0.2111
|
| 48 |
+
@<TRIPOS>BOND
|
| 49 |
+
1 1 2 ar
|
| 50 |
+
2 1 3 ar
|
| 51 |
+
3 1 4 ar
|
| 52 |
+
4 1 5 1
|
| 53 |
+
5 5 6 1
|
| 54 |
+
6 6 7 1
|
| 55 |
+
7 7 8 1
|
| 56 |
+
8 7 9 1
|
| 57 |
+
9 8 12 1
|
| 58 |
+
10 9 10 1
|
| 59 |
+
11 9 11 1
|
| 60 |
+
12 11 12 1
|
| 61 |
+
13 12 13 1
|
| 62 |
+
14 13 14 am
|
| 63 |
+
15 13 21 am
|
| 64 |
+
16 14 15 2
|
| 65 |
+
17 14 16 am
|
| 66 |
+
18 16 17 am
|
| 67 |
+
19 17 18 2
|
| 68 |
+
20 17 19 1
|
| 69 |
+
21 19 20 1
|
| 70 |
+
22 19 21 2
|
| 71 |
+
23 20 22 1
|
| 72 |
+
24 6 23 1
|
| 73 |
+
25 6 24 1
|
| 74 |
+
26 7 25 1
|
| 75 |
+
27 9 26 1
|
| 76 |
+
28 10 27 1
|
| 77 |
+
29 11 28 1
|
| 78 |
+
30 11 29 1
|
| 79 |
+
31 12 30 1
|
| 80 |
+
32 16 31 1
|
| 81 |
+
33 20 32 1
|
| 82 |
+
34 20 33 1
|
| 83 |
+
35 21 34 1
|
| 84 |
+
36 22 35 1
|
| 85 |
+
@<TRIPOS>SUBSTRUCTURE
|
| 86 |
+
1 5HU 1
|
| 87 |
+
|
1mrs/1mrs_ligand.sdf
ADDED
|
@@ -0,0 +1,81 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
1mrs_ligand
|
| 2 |
+
-I-interpret-
|
| 3 |
+
|
| 4 |
+
37 38 0 0 0 0 0 0 0 0999 V2000
|
| 5 |
+
26.4290 15.2810 8.3730 P 0 0 0 0 0
|
| 6 |
+
27.4210 14.8400 9.5550 O 0 0 0 0 0
|
| 7 |
+
25.5450 16.6390 8.8350 O 0 0 0 0 0
|
| 8 |
+
27.2720 15.6440 6.9850 O 0 0 0 0 0
|
| 9 |
+
25.3510 14.1790 8.1290 O 0 0 0 0 0
|
| 10 |
+
25.3440 13.0540 7.3450 C 0 0 0 0 0
|
| 11 |
+
23.9370 12.4280 7.5210 C 0 0 0 0 0
|
| 12 |
+
23.8310 11.0130 7.7110 O 0 0 0 0 0
|
| 13 |
+
22.9490 12.8970 8.6520 C 0 0 0 0 0
|
| 14 |
+
21.4840 13.1190 8.4360 O 0 0 0 0 0
|
| 15 |
+
23.5020 11.9320 9.7490 C 0 0 0 0 0
|
| 16 |
+
23.5510 10.6290 9.0420 C 0 0 0 0 0
|
| 17 |
+
24.5820 9.6320 9.3830 N 0 0 0 0 0
|
| 18 |
+
24.0980 8.3690 9.6460 C 0 0 0 0 0
|
| 19 |
+
22.8300 8.1360 9.5760 O 0 0 0 0 0
|
| 20 |
+
24.9180 7.3630 9.9780 N 0 0 0 0 0
|
| 21 |
+
26.2480 7.5750 10.0590 C 0 0 0 0 0
|
| 22 |
+
27.0210 6.5500 10.3930 O 0 0 0 0 0
|
| 23 |
+
26.8010 8.8510 9.7950 C 0 0 0 0 0
|
| 24 |
+
28.2830 9.0410 9.8900 C 0 0 0 0 0
|
| 25 |
+
25.9230 9.8800 9.4540 C 0 0 0 0 0
|
| 26 |
+
28.6390 8.8530 8.9170 O 0 0 0 0 0
|
| 27 |
+
24.9556 16.8938 8.1213 H 0 0 0 0 0
|
| 28 |
+
26.6557 15.9039 6.2964 H 0 0 0 0 0
|
| 29 |
+
26.1285 12.3579 7.6420 H 0 0 0 0 0
|
| 30 |
+
25.5434 13.2960 6.3011 H 0 0 0 0 0
|
| 31 |
+
23.6629 12.8097 6.5375 H 0 0 0 0 0
|
| 32 |
+
22.9440 13.9638 8.8756 H 0 0 0 0 0
|
| 33 |
+
21.0794 13.4012 9.2596 H 0 0 0 0 0
|
| 34 |
+
22.8818 11.9067 10.6450 H 0 0 0 0 0
|
| 35 |
+
24.4720 12.2416 10.1380 H 0 0 0 0 0
|
| 36 |
+
22.6210 10.1192 9.2935 H 0 0 0 0 0
|
| 37 |
+
24.5368 6.4365 10.1696 H 0 0 0 0 0
|
| 38 |
+
28.7327 8.3725 10.6241 H 0 0 0 0 0
|
| 39 |
+
28.5437 10.0425 10.2323 H 0 0 0 0 0
|
| 40 |
+
26.3061 10.8788 9.2449 H 0 0 0 0 0
|
| 41 |
+
29.5932 8.9572 8.9009 H 0 0 0 0 0
|
| 42 |
+
1 2 2 0 0 0
|
| 43 |
+
1 3 1 0 0 0
|
| 44 |
+
1 4 1 0 0 0
|
| 45 |
+
1 5 1 0 0 0
|
| 46 |
+
5 6 1 0 0 0
|
| 47 |
+
6 7 1 0 0 0
|
| 48 |
+
7 8 1 0 0 0
|
| 49 |
+
7 9 1 0 0 0
|
| 50 |
+
8 12 1 0 0 0
|
| 51 |
+
9 10 1 0 0 0
|
| 52 |
+
9 11 1 0 0 0
|
| 53 |
+
11 12 1 0 0 0
|
| 54 |
+
12 13 1 0 0 0
|
| 55 |
+
13 14 1 0 0 0
|
| 56 |
+
13 21 1 0 0 0
|
| 57 |
+
14 15 2 0 0 0
|
| 58 |
+
14 16 1 0 0 0
|
| 59 |
+
16 17 1 0 0 0
|
| 60 |
+
17 18 2 0 0 0
|
| 61 |
+
17 19 1 0 0 0
|
| 62 |
+
19 20 1 0 0 0
|
| 63 |
+
19 21 2 0 0 0
|
| 64 |
+
20 22 1 0 0 0
|
| 65 |
+
3 23 1 0 0 0
|
| 66 |
+
4 24 1 0 0 0
|
| 67 |
+
6 25 1 0 0 0
|
| 68 |
+
6 26 1 0 0 0
|
| 69 |
+
7 27 1 0 0 0
|
| 70 |
+
9 28 1 0 0 0
|
| 71 |
+
10 29 1 0 0 0
|
| 72 |
+
11 30 1 0 0 0
|
| 73 |
+
11 31 1 0 0 0
|
| 74 |
+
12 32 1 0 0 0
|
| 75 |
+
16 33 1 0 0 0
|
| 76 |
+
20 34 1 0 0 0
|
| 77 |
+
20 35 1 0 0 0
|
| 78 |
+
21 36 1 0 0 0
|
| 79 |
+
22 37 1 0 0 0
|
| 80 |
+
M END
|
| 81 |
+
$$$$
|
1mrs/1mrs_protein_esmfold_aligned_tr_fix.pdb
ADDED
|
The diff for this file is too large to render.
See raw diff
|
|
|
1mrs/1mrs_protein_processed_fix.pdb
ADDED
|
The diff for this file is too large to render.
See raw diff
|
|
|
1pip/1pip_ligand.mol2
ADDED
|
@@ -0,0 +1,206 @@
|
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|
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|
|
|
|
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|
|
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|
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|
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|
|
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|
|
|
|
|
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|
|
|
|
|
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|
|
|
|
|
|
|
|
|
|
|
|
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|
|
|
|
|
|
|
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|
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|
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|
|
|
|
|
|
|
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|
|
|
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|
|
|
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|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
###
|
| 2 |
+
### Created by X-TOOL on Mon Sep 10 21:12:45 2018
|
| 3 |
+
###
|
| 4 |
+
|
| 5 |
+
@<TRIPOS>MOLECULE
|
| 6 |
+
1pip_ligand
|
| 7 |
+
95 95 1 0 0
|
| 8 |
+
SMALL
|
| 9 |
+
GAST_HUCK
|
| 10 |
+
|
| 11 |
+
|
| 12 |
+
@<TRIPOS>ATOM
|
| 13 |
+
1 C1 59.2760 58.8230 18.5060 C.2 1 SIN 0.0370
|
| 14 |
+
2 O1A 60.1470 58.8340 19.3580 O.co2 1 SIN -0.5689
|
| 15 |
+
3 O1B 59.0200 59.8150 17.8640 O.co2 1 SIN -0.5689
|
| 16 |
+
4 C2 58.4920 57.5190 18.2210 C.3 1 SIN 0.0171
|
| 17 |
+
5 C3 57.3980 57.5010 17.0980 C.3 1 SIN 0.0488
|
| 18 |
+
6 C4 56.1920 56.5100 17.1850 C.2 1 SIN 0.1799
|
| 19 |
+
7 O4A 55.8080 56.1790 18.2830 O.2 1 SIN -0.3968
|
| 20 |
+
8 N 56.6960 55.6500 16.2660 N.am 1 GLN -0.2654
|
| 21 |
+
9 CA 56.0070 54.3620 16.1980 C.3 1 GLN 0.1330
|
| 22 |
+
10 C 56.9730 53.5410 16.9990 C.2 1 GLN 0.2040
|
| 23 |
+
11 O 58.1590 53.7550 16.7490 O.2 1 GLN -0.3944
|
| 24 |
+
12 CB 55.9560 53.7110 14.8060 C.3 1 GLN 0.0045
|
| 25 |
+
13 CG 55.3620 52.2770 14.7840 C.3 1 GLN 0.0412
|
| 26 |
+
14 CD 55.5650 51.4950 13.4910 C.2 1 GLN 0.1737
|
| 27 |
+
15 OE1 56.2390 50.4720 13.5140 O.2 1 GLN -0.3973
|
| 28 |
+
16 NE2 55.0530 51.8430 12.3170 N.am 1 GLN -0.3009
|
| 29 |
+
17 N 56.3960 52.6720 17.8540 N.am 1 VAL -0.2635
|
| 30 |
+
18 CA 56.9750 51.7310 18.8350 C.3 1 VAL 0.1332
|
| 31 |
+
19 C 56.7010 52.2570 20.2620 C.2 1 VAL 0.2042
|
| 32 |
+
20 O 56.7910 53.4440 20.5980 O.2 1 VAL -0.3944
|
| 33 |
+
21 CB 58.4780 51.5040 18.4790 C.3 1 VAL -0.0063
|
| 34 |
+
22 CG1 59.5030 51.4210 19.5940 C.3 1 VAL -0.0584
|
| 35 |
+
23 CG2 58.3270 50.2260 17.6540 C.3 1 VAL -0.0584
|
| 36 |
+
24 N 56.1020 51.2530 20.9270 N.am 1 VAL -0.2635
|
| 37 |
+
25 CA 55.3130 51.3350 22.1680 C.3 1 VAL 0.1332
|
| 38 |
+
26 C 55.0710 49.8700 22.6340 C.2 1 VAL 0.2041
|
| 39 |
+
27 O 55.4370 48.9650 21.8870 O.2 1 VAL -0.3944
|
| 40 |
+
28 CB 53.9790 52.0370 21.7880 C.3 1 VAL -0.0063
|
| 41 |
+
29 CG1 53.2530 51.0510 20.8320 C.3 1 VAL -0.0584
|
| 42 |
+
30 CG2 53.1120 52.4220 22.9990 C.3 1 VAL -0.0584
|
| 43 |
+
31 N 54.4160 49.5650 23.7670 N.am 1 ALA -0.2640
|
| 44 |
+
32 CA 54.1270 48.2130 24.2860 C.3 1 ALA 0.1282
|
| 45 |
+
33 C 53.8190 46.9100 23.4790 C.2 1 ALA 0.2037
|
| 46 |
+
34 O 52.7120 46.3460 23.5760 O.2 1 ALA -0.3944
|
| 47 |
+
35 CB 53.0020 48.4090 25.3250 C.3 1 ALA -0.0244
|
| 48 |
+
36 N 54.8770 46.4220 22.7950 N.am 1 ALA -0.2600
|
| 49 |
+
37 CA 55.0550 45.1740 22.0100 C.3 1 ALA 0.1748
|
| 50 |
+
38 C 55.3220 45.4510 20.5170 C.2 1 ALA 0.3876
|
| 51 |
+
39 O 54.4890 46.0640 19.8250 O.2 1 ALA -0.2799
|
| 52 |
+
40 CB 53.8600 44.1780 22.0080 C.3 1 ALA -0.0199
|
| 53 |
+
41 N1 55.9100 44.3510 19.8450 N.am 1 NIT -0.0835
|
| 54 |
+
42 C1 57.1900 44.4220 19.4760 C.ar 1 NIT 0.3148
|
| 55 |
+
43 C2 57.6950 45.4980 18.7310 C.ar 1 NIT 0.1241
|
| 56 |
+
44 C3 59.0430 45.5790 18.3500 C.ar 1 NIT 0.0809
|
| 57 |
+
45 C4 59.9790 44.5750 18.6510 C.ar 1 NIT 0.1874
|
| 58 |
+
46 N4 61.2590 44.6690 18.2960 N.2 1 NIT -0.1366
|
| 59 |
+
47 ON1 61.6710 45.7540 17.6410 O.2 1 NIT -0.4480
|
| 60 |
+
48 ON2 62.0920 43.6780 18.6070 O.2 1 NIT -0.4480
|
| 61 |
+
49 C5 59.4680 43.4580 19.3340 C.ar 1 NIT 0.0809
|
| 62 |
+
50 C6 58.1200 43.3900 19.7230 C.ar 1 NIT 0.1241
|
| 63 |
+
51 H1 57.9914 57.2361 19.1587 H 1 SIN 0.0455
|
| 64 |
+
52 H2 59.2343 56.7518 17.9557 H 1 SIN 0.0455
|
| 65 |
+
53 H3 57.9183 57.2829 16.1537 H 1 SIN 0.0520
|
| 66 |
+
54 H4 56.9717 58.5142 17.0562 H 1 SIN 0.0520
|
| 67 |
+
55 H5 57.4753 55.8779 15.6823 H 1 GLN 0.1883
|
| 68 |
+
56 H6 54.9988 54.4151 16.6346 H 1 GLN 0.0801
|
| 69 |
+
57 H7 56.9818 53.6634 14.4118 H 1 GLN 0.0337
|
| 70 |
+
58 H8 55.3411 54.3470 14.1522 H 1 GLN 0.0337
|
| 71 |
+
59 H9 54.2797 52.3571 14.9637 H 1 GLN 0.0504
|
| 72 |
+
60 H10 55.8280 51.7060 15.6005 H 1 GLN 0.0504
|
| 73 |
+
61 H11 55.2281 51.2808 11.5087 H 1 GLN 0.1814
|
| 74 |
+
62 H12 54.4921 52.6674 12.2407 H 1 GLN 0.1814
|
| 75 |
+
63 H13 55.3967 52.6629 17.8174 H 1 VAL 0.1883
|
| 76 |
+
64 H14 56.4636 50.7619 18.7391 H 1 VAL 0.0802
|
| 77 |
+
65 H15 58.8130 52.3259 17.8292 H 1 VAL 0.0343
|
| 78 |
+
66 H16 60.5019 51.2598 19.1625 H 1 VAL 0.0234
|
| 79 |
+
67 H17 59.2522 50.5830 20.2610 H 1 VAL 0.0234
|
| 80 |
+
68 H18 59.4983 52.3599 20.1670 H 1 VAL 0.0234
|
| 81 |
+
69 H19 57.5665 50.3806 16.8744 H 1 VAL 0.0234
|
| 82 |
+
70 H20 58.0161 49.4002 18.3108 H 1 VAL 0.0234
|
| 83 |
+
71 H21 59.2896 49.9776 17.1831 H 1 VAL 0.0234
|
| 84 |
+
72 H22 56.2048 50.3405 20.5310 H 1 VAL 0.1883
|
| 85 |
+
73 H23 55.8415 51.9049 22.9464 H 1 VAL 0.0802
|
| 86 |
+
74 H24 54.2100 52.9631 21.2412 H 1 VAL 0.0343
|
| 87 |
+
75 H25 52.2919 51.4847 20.5188 H 1 VAL 0.0234
|
| 88 |
+
76 H26 53.0731 50.0996 21.3540 H 1 VAL 0.0234
|
| 89 |
+
77 H27 53.8798 50.8705 19.9463 H 1 VAL 0.0234
|
| 90 |
+
78 H28 53.6694 53.1188 23.6423 H 1 VAL 0.0234
|
| 91 |
+
79 H29 52.8590 51.5173 23.5713 H 1 VAL 0.0234
|
| 92 |
+
80 H30 52.1878 52.9053 22.6495 H 1 VAL 0.0234
|
| 93 |
+
81 H31 54.0900 50.3344 24.3164 H 1 ALA 0.1883
|
| 94 |
+
82 H32 55.0431 47.9503 24.8353 H 1 ALA 0.0797
|
| 95 |
+
83 H33 52.7304 47.4356 25.7593 H 1 ALA 0.0277
|
| 96 |
+
84 H34 52.1219 48.8497 24.8338 H 1 ALA 0.0277
|
| 97 |
+
85 H35 53.3521 49.0813 26.1221 H 1 ALA 0.0277
|
| 98 |
+
86 H36 55.6873 47.0074 22.8223 H 1 ALA 0.1885
|
| 99 |
+
87 H37 55.9273 44.6582 22.4378 H 1 ALA 0.0845
|
| 100 |
+
88 H38 54.1150 43.3006 21.3955 H 1 ALA 0.0278
|
| 101 |
+
89 H39 52.9714 44.6723 21.5885 H 1 ALA 0.0278
|
| 102 |
+
90 H40 53.6487 43.8567 23.0386 H 1 ALA 0.0278
|
| 103 |
+
91 H41 55.3719 43.5311 19.6496 H 1 NIT 0.4309
|
| 104 |
+
92 H42 57.0203 46.2947 18.4395 H 1 NIT 0.1344
|
| 105 |
+
93 H43 59.3761 46.4522 17.8008 H 1 NIT 0.1018
|
| 106 |
+
94 H44 60.1288 42.6306 19.5657 H 1 NIT 0.1018
|
| 107 |
+
95 H45 57.7771 42.5003 20.2387 H 1 NIT 0.1344
|
| 108 |
+
@<TRIPOS>BOND
|
| 109 |
+
1 4 1 1
|
| 110 |
+
2 1 3 ar
|
| 111 |
+
3 1 2 ar
|
| 112 |
+
4 5 4 1
|
| 113 |
+
5 6 5 1
|
| 114 |
+
6 6 7 2
|
| 115 |
+
7 10 9 1
|
| 116 |
+
8 9 12 1
|
| 117 |
+
9 9 8 1
|
| 118 |
+
10 12 13 1
|
| 119 |
+
11 13 14 1
|
| 120 |
+
12 14 15 2
|
| 121 |
+
13 14 16 am
|
| 122 |
+
14 10 11 2
|
| 123 |
+
15 19 18 1
|
| 124 |
+
16 18 21 1
|
| 125 |
+
17 18 17 1
|
| 126 |
+
18 21 22 1
|
| 127 |
+
19 21 23 1
|
| 128 |
+
20 19 20 2
|
| 129 |
+
21 26 25 1
|
| 130 |
+
22 25 28 1
|
| 131 |
+
23 25 24 1
|
| 132 |
+
24 28 29 1
|
| 133 |
+
25 28 30 1
|
| 134 |
+
26 26 27 2
|
| 135 |
+
27 33 32 1
|
| 136 |
+
28 32 35 1
|
| 137 |
+
29 32 31 1
|
| 138 |
+
30 33 34 2
|
| 139 |
+
31 38 37 1
|
| 140 |
+
32 37 40 1
|
| 141 |
+
33 37 36 1
|
| 142 |
+
34 38 39 2
|
| 143 |
+
35 41 42 1
|
| 144 |
+
36 42 50 ar
|
| 145 |
+
37 42 43 ar
|
| 146 |
+
38 43 44 ar
|
| 147 |
+
39 44 45 ar
|
| 148 |
+
40 49 45 ar
|
| 149 |
+
41 45 46 1
|
| 150 |
+
42 46 48 2
|
| 151 |
+
43 46 47 2
|
| 152 |
+
44 50 49 ar
|
| 153 |
+
45 17 10 am
|
| 154 |
+
46 24 19 am
|
| 155 |
+
47 31 26 am
|
| 156 |
+
48 36 33 am
|
| 157 |
+
49 8 6 am
|
| 158 |
+
50 38 41 am
|
| 159 |
+
51 4 51 1
|
| 160 |
+
52 4 52 1
|
| 161 |
+
53 5 53 1
|
| 162 |
+
54 5 54 1
|
| 163 |
+
55 8 55 1
|
| 164 |
+
56 9 56 1
|
| 165 |
+
57 12 57 1
|
| 166 |
+
58 12 58 1
|
| 167 |
+
59 13 59 1
|
| 168 |
+
60 13 60 1
|
| 169 |
+
61 16 61 1
|
| 170 |
+
62 16 62 1
|
| 171 |
+
63 17 63 1
|
| 172 |
+
64 18 64 1
|
| 173 |
+
65 21 65 1
|
| 174 |
+
66 22 66 1
|
| 175 |
+
67 22 67 1
|
| 176 |
+
68 22 68 1
|
| 177 |
+
69 23 69 1
|
| 178 |
+
70 23 70 1
|
| 179 |
+
71 23 71 1
|
| 180 |
+
72 24 72 1
|
| 181 |
+
73 25 73 1
|
| 182 |
+
74 28 74 1
|
| 183 |
+
75 29 75 1
|
| 184 |
+
76 29 76 1
|
| 185 |
+
77 29 77 1
|
| 186 |
+
78 30 78 1
|
| 187 |
+
79 30 79 1
|
| 188 |
+
80 30 80 1
|
| 189 |
+
81 31 81 1
|
| 190 |
+
82 32 82 1
|
| 191 |
+
83 35 83 1
|
| 192 |
+
84 35 84 1
|
| 193 |
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85 35 85 1
|
| 194 |
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86 36 86 1
|
| 195 |
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87 37 87 1
|
| 196 |
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|
| 197 |
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|
| 198 |
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|
| 199 |
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| 201 |
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| 202 |
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| 203 |
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| 204 |
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@<TRIPOS>SUBSTRUCTURE
|
| 205 |
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1 SIN 1
|
| 206 |
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|
1pip/1pip_ligand.sdf
ADDED
|
@@ -0,0 +1,198 @@
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| 1 |
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| 196 |
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50 96 1 0 0 0
|
| 197 |
+
M END
|
| 198 |
+
$$$$
|
1pip/1pip_protein_esmfold_aligned_tr_fix.pdb
ADDED
|
The diff for this file is too large to render.
See raw diff
|
|
|
1pip/1pip_protein_processed_fix.pdb
ADDED
|
The diff for this file is too large to render.
See raw diff
|
|
|
1qhc/1qhc_ligand.mol2
ADDED
|
@@ -0,0 +1,162 @@
|
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|
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|
|
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|
|
|
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|
|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
###
|
| 2 |
+
### Created by X-TOOL on Mon Sep 10 21:12:47 2018
|
| 3 |
+
###
|
| 4 |
+
|
| 5 |
+
@<TRIPOS>MOLECULE
|
| 6 |
+
1qhc_ligand
|
| 7 |
+
71 75 1 0 0
|
| 8 |
+
SMALL
|
| 9 |
+
GAST_HUCK
|
| 10 |
+
|
| 11 |
+
|
| 12 |
+
@<TRIPOS>ATOM
|
| 13 |
+
1 PA 38.9920 -4.3560 21.6870 P.3 1 PUA 0.2972
|
| 14 |
+
2 O1A 40.0580 -5.3370 22.1640 O.co2 1 PUA -0.6127
|
| 15 |
+
3 O2A 39.4970 -3.0000 21.1910 O.co2 1 PUA -0.6127
|
| 16 |
+
4 O5' 38.0870 -5.0020 20.5540 O.3 1 PUA -0.2476
|
| 17 |
+
5 PB 37.0510 -2.8920 23.3060 P.3 1 PUA 0.2974
|
| 18 |
+
6 O1B 36.3860 -2.3420 22.1150 O.co2 1 PUA -0.6127
|
| 19 |
+
7 O2B 36.2360 -3.3300 24.4510 O.co2 1 PUA -0.6127
|
| 20 |
+
8 O3A 37.9380 -4.1190 22.8500 O.3 1 PUA -0.1319
|
| 21 |
+
9 PG 39.7220 -9.8380 19.9040 P.3 1 PUA 0.2013
|
| 22 |
+
10 O1G 38.6520 -10.9000 20.1460 O.co2 1 PUA -0.5537
|
| 23 |
+
11 O2G 40.9320 -10.3570 19.1340 O.co2 1 PUA -0.5537
|
| 24 |
+
12 O3G 40.0870 -9.0700 21.1740 O.co2 1 PUA -0.5537
|
| 25 |
+
13 N9A 37.2400 -5.7040 16.3150 N.pl3 1 PUA -0.1919
|
| 26 |
+
14 C4A 37.5340 -4.3630 16.1460 C.ar 1 PUA 0.1613
|
| 27 |
+
15 N3A 38.2830 -3.5700 16.9460 N.ar 1 PUA -0.2714
|
| 28 |
+
16 C2A 38.3650 -2.3180 16.4440 C.ar 1 PUA 0.0533
|
| 29 |
+
17 N1A 37.8180 -1.8170 15.3130 N.ar 1 PUA -0.2698
|
| 30 |
+
18 C6A 37.0770 -2.6390 14.5350 C.ar 1 PUA 0.1298
|
| 31 |
+
19 N6A 36.5470 -2.1430 13.4170 N.pl3 1 PUA -0.3152
|
| 32 |
+
20 C5A 36.9100 -3.9870 14.9570 C.ar 1 PUA 0.1045
|
| 33 |
+
21 N7A 36.2250 -5.0600 14.4050 N.2 1 PUA -0.2958
|
| 34 |
+
22 C8A 36.4440 -6.0450 15.2450 C.2 1 PUA 0.1123
|
| 35 |
+
23 C5' 37.3630 -6.1860 20.8110 C.3 1 PUA 0.1131
|
| 36 |
+
24 C4' 37.4940 -7.1150 19.6450 C.3 1 PUA 0.1235
|
| 37 |
+
25 O4' 36.8210 -6.5390 18.4850 O.3 1 PUA -0.3360
|
| 38 |
+
26 C1' 37.6710 -6.6470 17.3620 C.3 1 PUA 0.2013
|
| 39 |
+
27 C2' 39.0800 -6.5310 17.9450 C.3 1 PUA 0.1432
|
| 40 |
+
28 O2' 40.0810 -7.0220 17.0640 O.3 1 PUA -0.3832
|
| 41 |
+
29 C3' 38.9360 -7.3800 19.2100 C.3 1 PUA 0.1487
|
| 42 |
+
30 O3' 39.0320 -8.7660 18.8900 O.3 1 PUA -0.2674
|
| 43 |
+
31 O5 39.8780 1.8350 22.3930 O.3 1 PUA -0.2734
|
| 44 |
+
32 C5 40.5620 0.7860 23.1070 C.3 1 PUA 0.1074
|
| 45 |
+
33 C4 39.5800 0.0470 23.9840 C.3 1 PUA 0.1210
|
| 46 |
+
34 O4 38.8640 1.0110 24.7940 O.3 1 PUA -0.3383
|
| 47 |
+
35 C1 37.4750 0.9180 24.5350 C.3 1 PUA 0.1804
|
| 48 |
+
36 C2 37.3500 0.2620 23.1740 C.3 1 PUA 0.0370
|
| 49 |
+
37 C3 38.5090 -0.7110 23.2010 C.3 1 PUA 0.1284
|
| 50 |
+
38 O3 38.1300 -1.8740 23.9250 O.3 1 PUA -0.2441
|
| 51 |
+
39 PD 40.2490 2.1940 20.8430 P.3 1 PUA 0.2008
|
| 52 |
+
40 O1D 41.3350 3.2710 20.9280 O.co2 1 PUA -0.5537
|
| 53 |
+
41 O2D 38.9510 2.7070 20.1950 O.co2 1 PUA -0.5537
|
| 54 |
+
42 O3D 40.7550 0.8890 20.2250 O.co2 1 PUA -0.5537
|
| 55 |
+
43 N1U 36.9080 2.2720 24.5600 N.am 1 PUA -0.1618
|
| 56 |
+
44 C6U 37.4650 3.3020 23.8020 C.2 1 PUA 0.0590
|
| 57 |
+
45 C2U 35.7660 2.4790 25.3340 C.2 1 PUA 0.3327
|
| 58 |
+
46 O2U 35.2660 1.6160 26.0290 O.2 1 PUA -0.3815
|
| 59 |
+
47 N3U 35.2330 3.7450 25.2410 N.am 1 PUA -0.1865
|
| 60 |
+
48 C4U 35.7040 4.7970 24.4630 C.2 1 PUA 0.1822
|
| 61 |
+
49 O4U 35.0040 5.7950 24.3380 O.2 1 PUA -0.4124
|
| 62 |
+
50 C5U 36.9130 4.5210 23.7240 C.2 1 PUA 0.0062
|
| 63 |
+
51 H1 38.9505 -1.6180 17.0290 H 1 PUA 0.0996
|
| 64 |
+
52 H2 35.9783 -2.7456 12.8052 H 1 PUA 0.1820
|
| 65 |
+
53 H3 36.7062 -1.1571 13.1649 H 1 PUA 0.1820
|
| 66 |
+
54 H4 36.0322 -7.0437 15.1074 H 1 PUA 0.1349
|
| 67 |
+
55 H5 36.3021 -5.9404 20.9665 H 1 PUA 0.0648
|
| 68 |
+
56 H6 37.7630 -6.6717 21.7132 H 1 PUA 0.0648
|
| 69 |
+
57 H7 37.0221 -8.0717 19.9134 H 1 PUA 0.0654
|
| 70 |
+
58 H8 37.5767 -7.6537 16.9289 H 1 PUA 0.0996
|
| 71 |
+
59 H9 39.3164 -5.4868 18.1973 H 1 PUA 0.0680
|
| 72 |
+
60 H10 39.8602 -7.9066 16.7971 H 1 PUA 0.2101
|
| 73 |
+
61 H11 39.6690 -7.0985 19.9803 H 1 PUA 0.0704
|
| 74 |
+
62 H12 41.0097 0.0850 22.3872 H 1 PUA 0.0639
|
| 75 |
+
63 H13 41.3534 1.2247 23.7325 H 1 PUA 0.0639
|
| 76 |
+
64 H14 40.1335 -0.6568 24.6230 H 1 PUA 0.0653
|
| 77 |
+
65 H15 36.9773 0.2991 25.2960 H 1 PUA 0.0970
|
| 78 |
+
66 H16 36.3884 -0.2612 23.0669 H 1 PUA 0.0349
|
| 79 |
+
67 H17 37.4604 0.9962 22.3624 H 1 PUA 0.0349
|
| 80 |
+
68 H18 38.8487 -0.9755 22.1888 H 1 PUA 0.0686
|
| 81 |
+
69 H19 38.3846 3.1081 23.2519 H 1 PUA 0.1178
|
| 82 |
+
70 H20 34.4191 3.9278 25.7926 H 1 PUA 0.2259
|
| 83 |
+
71 H21 37.3715 5.2947 23.1099 H 1 PUA 0.0258
|
| 84 |
+
@<TRIPOS>BOND
|
| 85 |
+
1 1 8 1
|
| 86 |
+
2 1 4 1
|
| 87 |
+
3 1 3 ar
|
| 88 |
+
4 1 2 ar
|
| 89 |
+
5 4 23 1
|
| 90 |
+
6 23 24 1
|
| 91 |
+
7 24 29 1
|
| 92 |
+
8 24 25 1
|
| 93 |
+
9 25 26 1
|
| 94 |
+
10 26 27 1
|
| 95 |
+
11 26 13 1
|
| 96 |
+
12 13 22 1
|
| 97 |
+
13 13 14 1
|
| 98 |
+
14 14 20 ar
|
| 99 |
+
15 14 15 ar
|
| 100 |
+
16 15 16 ar
|
| 101 |
+
17 16 17 ar
|
| 102 |
+
18 17 18 ar
|
| 103 |
+
19 18 20 ar
|
| 104 |
+
20 18 19 1
|
| 105 |
+
21 20 21 1
|
| 106 |
+
22 21 22 2
|
| 107 |
+
23 27 29 1
|
| 108 |
+
24 27 28 1
|
| 109 |
+
25 29 30 1
|
| 110 |
+
26 30 9 1
|
| 111 |
+
27 9 12 ar
|
| 112 |
+
28 9 11 ar
|
| 113 |
+
29 9 10 ar
|
| 114 |
+
30 8 5 1
|
| 115 |
+
31 5 38 1
|
| 116 |
+
32 5 7 ar
|
| 117 |
+
33 5 6 ar
|
| 118 |
+
34 38 37 1
|
| 119 |
+
35 37 36 1
|
| 120 |
+
36 37 33 1
|
| 121 |
+
37 33 34 1
|
| 122 |
+
38 33 32 1
|
| 123 |
+
39 32 31 1
|
| 124 |
+
40 31 39 1
|
| 125 |
+
41 39 42 ar
|
| 126 |
+
42 39 41 ar
|
| 127 |
+
43 39 40 ar
|
| 128 |
+
44 34 35 1
|
| 129 |
+
45 35 43 1
|
| 130 |
+
46 35 36 1
|
| 131 |
+
47 43 45 am
|
| 132 |
+
48 43 44 am
|
| 133 |
+
49 44 50 2
|
| 134 |
+
50 50 48 1
|
| 135 |
+
51 48 49 2
|
| 136 |
+
52 48 47 am
|
| 137 |
+
53 47 45 am
|
| 138 |
+
54 45 46 2
|
| 139 |
+
55 16 51 1
|
| 140 |
+
56 19 52 1
|
| 141 |
+
57 19 53 1
|
| 142 |
+
58 22 54 1
|
| 143 |
+
59 23 55 1
|
| 144 |
+
60 23 56 1
|
| 145 |
+
61 24 57 1
|
| 146 |
+
62 26 58 1
|
| 147 |
+
63 27 59 1
|
| 148 |
+
64 28 60 1
|
| 149 |
+
65 29 61 1
|
| 150 |
+
66 32 62 1
|
| 151 |
+
67 32 63 1
|
| 152 |
+
68 33 64 1
|
| 153 |
+
69 35 65 1
|
| 154 |
+
70 36 66 1
|
| 155 |
+
71 36 67 1
|
| 156 |
+
72 37 68 1
|
| 157 |
+
73 44 69 1
|
| 158 |
+
74 47 70 1
|
| 159 |
+
75 50 71 1
|
| 160 |
+
@<TRIPOS>SUBSTRUCTURE
|
| 161 |
+
1 PUA 1
|
| 162 |
+
|
1qhc/1qhc_ligand.sdf
ADDED
|
@@ -0,0 +1,164 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
1qhc_ligand
|
| 2 |
+
-I-interpret-
|
| 3 |
+
|
| 4 |
+
77 81 0 0 0 0 0 0 0 0999 V2000
|
| 5 |
+
38.9920 -4.3560 21.6870 P 0 0 0 0 0
|
| 6 |
+
40.0580 -5.3370 22.1640 O 0 0 0 0 0
|
| 7 |
+
39.4970 -3.0000 21.1910 O 0 0 0 0 0
|
| 8 |
+
38.0870 -5.0020 20.5540 O 0 0 0 0 0
|
| 9 |
+
37.0510 -2.8920 23.3060 P 0 0 0 0 0
|
| 10 |
+
36.3860 -2.3420 22.1150 O 0 0 0 0 0
|
| 11 |
+
36.2360 -3.3300 24.4510 O 0 0 0 0 0
|
| 12 |
+
37.9380 -4.1190 22.8500 O 0 0 0 0 0
|
| 13 |
+
39.7220 -9.8380 19.9040 P 0 0 0 0 0
|
| 14 |
+
38.6520 -10.9000 20.1460 O 0 0 0 0 0
|
| 15 |
+
40.9320 -10.3570 19.1340 O 0 0 0 0 0
|
| 16 |
+
40.0870 -9.0700 21.1740 O 0 0 0 0 0
|
| 17 |
+
37.2400 -5.7040 16.3150 N 0 0 0 0 0
|
| 18 |
+
37.5340 -4.3630 16.1460 C 0 0 0 0 0
|
| 19 |
+
38.2830 -3.5700 16.9460 N 0 0 0 0 0
|
| 20 |
+
38.3650 -2.3180 16.4440 C 0 0 0 0 0
|
| 21 |
+
37.8180 -1.8170 15.3130 N 0 0 0 0 0
|
| 22 |
+
37.0770 -2.6390 14.5350 C 0 0 0 0 0
|
| 23 |
+
36.5470 -2.1430 13.4170 N 0 0 0 0 0
|
| 24 |
+
36.9100 -3.9870 14.9570 C 0 0 0 0 0
|
| 25 |
+
36.2250 -5.0600 14.4050 N 0 0 0 0 0
|
| 26 |
+
36.4440 -6.0450 15.2450 C 0 0 0 0 0
|
| 27 |
+
37.3630 -6.1860 20.8110 C 0 0 0 0 0
|
| 28 |
+
37.4940 -7.1150 19.6450 C 0 0 0 0 0
|
| 29 |
+
36.8210 -6.5390 18.4850 O 0 0 0 0 0
|
| 30 |
+
37.6710 -6.6470 17.3620 C 0 0 0 0 0
|
| 31 |
+
39.0800 -6.5310 17.9450 C 0 0 0 0 0
|
| 32 |
+
40.0810 -7.0220 17.0640 O 0 0 0 0 0
|
| 33 |
+
38.9360 -7.3800 19.2100 C 0 0 0 0 0
|
| 34 |
+
39.0320 -8.7660 18.8900 O 0 0 0 0 0
|
| 35 |
+
39.8780 1.8350 22.3930 O 0 0 0 0 0
|
| 36 |
+
40.5620 0.7860 23.1070 C 0 0 0 0 0
|
| 37 |
+
39.5800 0.0470 23.9840 C 0 0 0 0 0
|
| 38 |
+
38.8640 1.0110 24.7940 O 0 0 0 0 0
|
| 39 |
+
37.4750 0.9180 24.5350 C 0 0 0 0 0
|
| 40 |
+
37.3500 0.2620 23.1740 C 0 0 0 0 0
|
| 41 |
+
38.5090 -0.7110 23.2010 C 0 0 0 0 0
|
| 42 |
+
38.1300 -1.8740 23.9250 O 0 0 0 0 0
|
| 43 |
+
40.2490 2.1940 20.8430 P 0 0 0 0 0
|
| 44 |
+
41.3350 3.2710 20.9280 O 0 0 0 0 0
|
| 45 |
+
38.9510 2.7070 20.1950 O 0 0 0 0 0
|
| 46 |
+
40.7550 0.8890 20.2250 O 0 0 0 0 0
|
| 47 |
+
36.9080 2.2720 24.5600 N 0 0 0 0 0
|
| 48 |
+
37.4650 3.3020 23.8020 C 0 0 0 0 0
|
| 49 |
+
35.7660 2.4790 25.3340 C 0 0 0 0 0
|
| 50 |
+
35.2660 1.6160 26.0290 O 0 0 0 0 0
|
| 51 |
+
35.2330 3.7450 25.2410 N 0 0 0 0 0
|
| 52 |
+
35.7040 4.7970 24.4630 C 0 0 0 0 0
|
| 53 |
+
35.0040 5.7950 24.3380 O 0 0 0 0 0
|
| 54 |
+
36.9130 4.5210 23.7240 C 0 0 0 0 0
|
| 55 |
+
38.7504 -2.4627 20.9163 H 0 0 0 0 0
|
| 56 |
+
36.8117 -3.6618 25.1439 H 0 0 0 0 0
|
| 57 |
+
37.9214 -10.5114 20.6326 H 0 0 0 0 0
|
| 58 |
+
39.2843 -8.7726 21.6086 H 0 0 0 0 0
|
| 59 |
+
38.9537 -1.6141 17.0323 H 0 0 0 0 0
|
| 60 |
+
36.7047 -1.1667 13.1673 H 0 0 0 0 0
|
| 61 |
+
35.9838 -2.7398 12.8112 H 0 0 0 0 0
|
| 62 |
+
36.0318 -7.0446 15.1072 H 0 0 0 0 0
|
| 63 |
+
36.3117 -5.9425 20.9648 H 0 0 0 0 0
|
| 64 |
+
37.7597 -6.6673 21.7049 H 0 0 0 0 0
|
| 65 |
+
37.0542 -8.0544 19.9798 H 0 0 0 0 0
|
| 66 |
+
37.6389 -7.5863 16.8099 H 0 0 0 0 0
|
| 67 |
+
39.4062 -5.5072 18.1281 H 0 0 0 0 0
|
| 68 |
+
40.9429 -6.9266 17.4758 H 0 0 0 0 0
|
| 69 |
+
39.6954 -7.1428 19.9550 H 0 0 0 0 0
|
| 70 |
+
41.0047 0.0911 22.3934 H 0 0 0 0 0
|
| 71 |
+
41.3455 1.2213 23.7273 H 0 0 0 0 0
|
| 72 |
+
40.1691 -0.6654 24.5615 H 0 0 0 0 0
|
| 73 |
+
36.9320 0.3295 25.2746 H 0 0 0 0 0
|
| 74 |
+
36.3840 -0.2142 23.0060 H 0 0 0 0 0
|
| 75 |
+
37.3914 0.9673 22.3440 H 0 0 0 0 0
|
| 76 |
+
38.8360 -1.0274 22.2105 H 0 0 0 0 0
|
| 77 |
+
40.9663 4.0653 21.3213 H 0 0 0 0 0
|
| 78 |
+
38.6830 3.5242 20.6216 H 0 0 0 0 0
|
| 79 |
+
38.3855 3.1079 23.2514 H 0 0 0 0 0
|
| 80 |
+
34.4029 3.9315 25.8036 H 0 0 0 0 0
|
| 81 |
+
37.3720 5.2954 23.1093 H 0 0 0 0 0
|
| 82 |
+
1 8 1 0 0 0
|
| 83 |
+
1 4 1 0 0 0
|
| 84 |
+
1 3 1 0 0 0
|
| 85 |
+
1 2 2 0 0 0
|
| 86 |
+
4 23 1 0 0 0
|
| 87 |
+
23 24 1 0 0 0
|
| 88 |
+
24 29 1 0 0 0
|
| 89 |
+
24 25 1 0 0 0
|
| 90 |
+
25 26 1 0 0 0
|
| 91 |
+
26 27 1 0 0 0
|
| 92 |
+
26 13 1 0 0 0
|
| 93 |
+
13 22 4 0 0 0
|
| 94 |
+
13 14 4 0 0 0
|
| 95 |
+
14 20 4 0 0 0
|
| 96 |
+
14 15 4 0 0 0
|
| 97 |
+
15 16 4 0 0 0
|
| 98 |
+
16 17 4 0 0 0
|
| 99 |
+
17 18 4 0 0 0
|
| 100 |
+
18 20 4 0 0 0
|
| 101 |
+
18 19 1 0 0 0
|
| 102 |
+
20 21 4 0 0 0
|
| 103 |
+
21 22 4 0 0 0
|
| 104 |
+
27 29 1 0 0 0
|
| 105 |
+
27 28 1 0 0 0
|
| 106 |
+
29 30 1 0 0 0
|
| 107 |
+
30 9 1 0 0 0
|
| 108 |
+
9 12 1 0 0 0
|
| 109 |
+
9 11 2 0 0 0
|
| 110 |
+
9 10 1 0 0 0
|
| 111 |
+
8 5 1 0 0 0
|
| 112 |
+
5 38 1 0 0 0
|
| 113 |
+
5 7 1 0 0 0
|
| 114 |
+
5 6 2 0 0 0
|
| 115 |
+
38 37 1 0 0 0
|
| 116 |
+
37 36 1 0 0 0
|
| 117 |
+
37 33 1 0 0 0
|
| 118 |
+
33 34 1 0 0 0
|
| 119 |
+
33 32 1 0 0 0
|
| 120 |
+
32 31 1 0 0 0
|
| 121 |
+
31 39 1 0 0 0
|
| 122 |
+
39 42 2 0 0 0
|
| 123 |
+
39 41 1 0 0 0
|
| 124 |
+
39 40 1 0 0 0
|
| 125 |
+
34 35 1 0 0 0
|
| 126 |
+
35 43 1 0 0 0
|
| 127 |
+
35 36 1 0 0 0
|
| 128 |
+
43 45 1 0 0 0
|
| 129 |
+
43 44 1 0 0 0
|
| 130 |
+
44 50 2 0 0 0
|
| 131 |
+
50 48 1 0 0 0
|
| 132 |
+
48 49 2 0 0 0
|
| 133 |
+
48 47 1 0 0 0
|
| 134 |
+
47 45 1 0 0 0
|
| 135 |
+
45 46 2 0 0 0
|
| 136 |
+
3 51 1 0 0 0
|
| 137 |
+
7 52 1 0 0 0
|
| 138 |
+
10 53 1 0 0 0
|
| 139 |
+
12 54 1 0 0 0
|
| 140 |
+
16 55 1 0 0 0
|
| 141 |
+
19 56 1 0 0 0
|
| 142 |
+
19 57 1 0 0 0
|
| 143 |
+
22 58 1 0 0 0
|
| 144 |
+
23 59 1 0 0 0
|
| 145 |
+
23 60 1 0 0 0
|
| 146 |
+
24 61 1 0 0 0
|
| 147 |
+
26 62 1 0 0 0
|
| 148 |
+
27 63 1 0 0 0
|
| 149 |
+
28 64 1 0 0 0
|
| 150 |
+
29 65 1 0 0 0
|
| 151 |
+
32 66 1 0 0 0
|
| 152 |
+
32 67 1 0 0 0
|
| 153 |
+
33 68 1 0 0 0
|
| 154 |
+
35 69 1 0 0 0
|
| 155 |
+
36 70 1 0 0 0
|
| 156 |
+
36 71 1 0 0 0
|
| 157 |
+
37 72 1 0 0 0
|
| 158 |
+
40 73 1 0 0 0
|
| 159 |
+
41 74 1 0 0 0
|
| 160 |
+
44 75 1 0 0 0
|
| 161 |
+
47 76 1 0 0 0
|
| 162 |
+
50 77 1 0 0 0
|
| 163 |
+
M END
|
| 164 |
+
$$$$
|
1qhc/1qhc_protein_esmfold_aligned_tr_fix.pdb
ADDED
|
@@ -0,0 +1,962 @@
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| 1 |
+
REMARK 1 CREATED WITH OPENMM 8.0, 2023-02-20
|
| 2 |
+
ATOM 1 N LYS A 1 37.759 -20.165 26.425 1.00 0.00 N
|
| 3 |
+
ATOM 2 CA LYS A 1 38.146 -18.874 25.864 1.00 0.00 C
|
| 4 |
+
ATOM 3 C LYS A 1 36.921 -18.017 25.560 1.00 0.00 C
|
| 5 |
+
ATOM 4 CB LYS A 1 38.977 -19.068 24.594 1.00 0.00 C
|
| 6 |
+
ATOM 5 O LYS A 1 35.940 -18.505 24.994 1.00 0.00 O
|
| 7 |
+
ATOM 6 CG LYS A 1 39.779 -17.841 24.186 1.00 0.00 C
|
| 8 |
+
ATOM 7 CD LYS A 1 40.686 -18.135 22.998 1.00 0.00 C
|
| 9 |
+
ATOM 8 CE LYS A 1 41.462 -16.898 22.566 1.00 0.00 C
|
| 10 |
+
ATOM 9 NZ LYS A 1 42.378 -17.191 21.424 1.00 0.00 N
|
| 11 |
+
ATOM 10 N GLU A 2 36.773 -16.789 26.102 1.00 0.00 N
|
| 12 |
+
ATOM 11 CA GLU A 2 35.622 -15.908 25.927 1.00 0.00 C
|
| 13 |
+
ATOM 12 C GLU A 2 35.511 -15.424 24.484 1.00 0.00 C
|
| 14 |
+
ATOM 13 CB GLU A 2 35.713 -14.711 26.878 1.00 0.00 C
|
| 15 |
+
ATOM 14 O GLU A 2 36.521 -15.108 23.851 1.00 0.00 O
|
| 16 |
+
ATOM 15 CG GLU A 2 34.493 -13.802 26.840 1.00 0.00 C
|
| 17 |
+
ATOM 16 CD GLU A 2 34.608 -12.604 27.769 1.00 0.00 C
|
| 18 |
+
ATOM 17 OE1 GLU A 2 35.726 -12.063 27.926 1.00 0.00 O
|
| 19 |
+
ATOM 18 OE2 GLU A 2 33.572 -12.204 28.345 1.00 0.00 O
|
| 20 |
+
ATOM 19 N THR A 3 34.353 -15.509 23.854 1.00 0.00 N
|
| 21 |
+
ATOM 20 CA THR A 3 34.132 -14.989 22.508 1.00 0.00 C
|
| 22 |
+
ATOM 21 C THR A 3 34.265 -13.470 22.486 1.00 0.00 C
|
| 23 |
+
ATOM 22 CB THR A 3 32.746 -15.394 21.974 1.00 0.00 C
|
| 24 |
+
ATOM 23 O THR A 3 34.196 -12.820 23.532 1.00 0.00 O
|
| 25 |
+
ATOM 24 CG2 THR A 3 32.540 -16.903 22.064 1.00 0.00 C
|
| 26 |
+
ATOM 25 OG1 THR A 3 31.732 -14.739 22.746 1.00 0.00 O
|
| 27 |
+
ATOM 26 N ALA A 4 34.520 -12.920 21.246 1.00 0.00 N
|
| 28 |
+
ATOM 27 CA ALA A 4 34.584 -11.467 21.100 1.00 0.00 C
|
| 29 |
+
ATOM 28 C ALA A 4 33.297 -10.810 21.590 1.00 0.00 C
|
| 30 |
+
ATOM 29 CB ALA A 4 34.850 -11.091 19.645 1.00 0.00 C
|
| 31 |
+
ATOM 30 O ALA A 4 33.337 -9.761 22.239 1.00 0.00 O
|
| 32 |
+
ATOM 31 N ALA A 5 32.127 -11.373 21.301 1.00 0.00 N
|
| 33 |
+
ATOM 32 CA ALA A 5 30.842 -10.844 21.750 1.00 0.00 C
|
| 34 |
+
ATOM 33 C ALA A 5 30.729 -10.897 23.271 1.00 0.00 C
|
| 35 |
+
ATOM 34 CB ALA A 5 29.694 -11.617 21.107 1.00 0.00 C
|
| 36 |
+
ATOM 35 O ALA A 5 30.255 -9.947 23.898 1.00 0.00 O
|
| 37 |
+
ATOM 36 N ALA A 6 31.134 -11.981 23.834 1.00 0.00 N
|
| 38 |
+
ATOM 37 CA ALA A 6 31.096 -12.114 25.288 1.00 0.00 C
|
| 39 |
+
ATOM 38 C ALA A 6 32.040 -11.116 25.955 1.00 0.00 C
|
| 40 |
+
ATOM 39 CB ALA A 6 31.455 -13.540 25.702 1.00 0.00 C
|
| 41 |
+
ATOM 40 O ALA A 6 31.708 -10.537 26.992 1.00 0.00 O
|
| 42 |
+
ATOM 41 N LYS A 7 33.179 -11.000 25.328 1.00 0.00 N
|
| 43 |
+
ATOM 42 CA LYS A 7 34.126 -10.008 25.830 1.00 0.00 C
|
| 44 |
+
ATOM 43 C LYS A 7 33.533 -8.603 25.771 1.00 0.00 C
|
| 45 |
+
ATOM 44 CB LYS A 7 35.430 -10.061 25.033 1.00 0.00 C
|
| 46 |
+
ATOM 45 O LYS A 7 33.675 -7.825 26.717 1.00 0.00 O
|
| 47 |
+
ATOM 46 CG LYS A 7 36.505 -9.113 25.542 1.00 0.00 C
|
| 48 |
+
ATOM 47 CD LYS A 7 37.787 -9.232 24.728 1.00 0.00 C
|
| 49 |
+
ATOM 48 CE LYS A 7 38.865 -8.284 25.237 1.00 0.00 C
|
| 50 |
+
ATOM 49 NZ LYS A 7 40.129 -8.408 24.451 1.00 0.00 N
|
| 51 |
+
ATOM 50 N PHE A 8 32.845 -8.233 24.666 1.00 0.00 N
|
| 52 |
+
ATOM 51 CA PHE A 8 32.166 -6.948 24.542 1.00 0.00 C
|
| 53 |
+
ATOM 52 C PHE A 8 31.163 -6.756 25.673 1.00 0.00 C
|
| 54 |
+
ATOM 53 CB PHE A 8 31.457 -6.843 23.189 1.00 0.00 C
|
| 55 |
+
ATOM 54 O PHE A 8 31.138 -5.704 26.316 1.00 0.00 O
|
| 56 |
+
ATOM 55 CG PHE A 8 30.650 -5.583 23.023 1.00 0.00 C
|
| 57 |
+
ATOM 56 CD1 PHE A 8 31.208 -4.457 22.430 1.00 0.00 C
|
| 58 |
+
ATOM 57 CD2 PHE A 8 29.333 -5.525 23.460 1.00 0.00 C
|
| 59 |
+
ATOM 58 CE1 PHE A 8 30.463 -3.289 22.275 1.00 0.00 C
|
| 60 |
+
ATOM 59 CE2 PHE A 8 28.583 -4.363 23.310 1.00 0.00 C
|
| 61 |
+
ATOM 60 CZ PHE A 8 29.150 -3.245 22.718 1.00 0.00 C
|
| 62 |
+
ATOM 61 N GLU A 9 30.357 -7.741 25.919 1.00 0.00 N
|
| 63 |
+
ATOM 62 CA GLU A 9 29.323 -7.638 26.945 1.00 0.00 C
|
| 64 |
+
ATOM 63 C GLU A 9 29.936 -7.454 28.330 1.00 0.00 C
|
| 65 |
+
ATOM 64 CB GLU A 9 28.424 -8.877 26.928 1.00 0.00 C
|
| 66 |
+
ATOM 65 O GLU A 9 29.495 -6.599 29.101 1.00 0.00 O
|
| 67 |
+
ATOM 66 CG GLU A 9 27.557 -8.990 25.683 1.00 0.00 C
|
| 68 |
+
ATOM 67 CD GLU A 9 26.620 -10.188 25.711 1.00 0.00 C
|
| 69 |
+
ATOM 68 OE1 GLU A 9 26.272 -10.659 26.817 1.00 0.00 O
|
| 70 |
+
ATOM 69 OE2 GLU A 9 26.233 -10.658 24.619 1.00 0.00 O
|
| 71 |
+
ATOM 70 N ARG A 10 30.909 -8.259 28.610 1.00 0.00 N
|
| 72 |
+
ATOM 71 CA ARG A 10 31.573 -8.162 29.906 1.00 0.00 C
|
| 73 |
+
ATOM 72 C ARG A 10 32.199 -6.785 30.099 1.00 0.00 C
|
| 74 |
+
ATOM 73 CB ARG A 10 32.644 -9.247 30.044 1.00 0.00 C
|
| 75 |
+
ATOM 74 O ARG A 10 32.097 -6.197 31.178 1.00 0.00 O
|
| 76 |
+
ATOM 75 CG ARG A 10 33.460 -9.148 31.323 1.00 0.00 C
|
| 77 |
+
ATOM 76 CD ARG A 10 34.434 -10.308 31.462 1.00 0.00 C
|
| 78 |
+
ATOM 77 NE ARG A 10 35.343 -10.390 30.322 1.00 0.00 N
|
| 79 |
+
ATOM 78 NH1 ARG A 10 36.749 -8.712 31.061 1.00 0.00 N
|
| 80 |
+
ATOM 79 NH2 ARG A 10 37.180 -9.786 29.082 1.00 0.00 N
|
| 81 |
+
ATOM 80 CZ ARG A 10 36.422 -9.629 30.159 1.00 0.00 C
|
| 82 |
+
ATOM 81 N GLN A 11 32.789 -6.232 29.061 1.00 0.00 N
|
| 83 |
+
ATOM 82 CA GLN A 11 33.568 -5.003 29.181 1.00 0.00 C
|
| 84 |
+
ATOM 83 C GLN A 11 32.667 -3.773 29.125 1.00 0.00 C
|
| 85 |
+
ATOM 84 CB GLN A 11 34.628 -4.928 28.082 1.00 0.00 C
|
| 86 |
+
ATOM 85 O GLN A 11 32.993 -2.730 29.695 1.00 0.00 O
|
| 87 |
+
ATOM 86 CG GLN A 11 35.735 -5.964 28.223 1.00 0.00 C
|
| 88 |
+
ATOM 87 CD GLN A 11 36.861 -5.760 27.228 1.00 0.00 C
|
| 89 |
+
ATOM 88 NE2 GLN A 11 37.839 -6.659 27.245 1.00 0.00 N
|
| 90 |
+
ATOM 89 OE1 GLN A 11 36.852 -4.801 26.449 1.00 0.00 O
|
| 91 |
+
ATOM 90 N HIS A 12 31.423 -3.879 28.516 1.00 0.00 N
|
| 92 |
+
ATOM 91 CA HIS A 12 30.771 -2.613 28.199 1.00 0.00 C
|
| 93 |
+
ATOM 92 C HIS A 12 29.322 -2.605 28.673 1.00 0.00 C
|
| 94 |
+
ATOM 93 CB HIS A 12 30.833 -2.341 26.695 1.00 0.00 C
|
| 95 |
+
ATOM 94 O HIS A 12 28.704 -1.543 28.779 1.00 0.00 O
|
| 96 |
+
ATOM 95 CG HIS A 12 32.223 -2.168 26.172 1.00 0.00 C
|
| 97 |
+
ATOM 96 CD2 HIS A 12 33.009 -2.997 25.446 1.00 0.00 C
|
| 98 |
+
ATOM 97 ND1 HIS A 12 32.962 -1.025 26.389 1.00 0.00 N
|
| 99 |
+
ATOM 98 CE1 HIS A 12 34.147 -1.160 25.815 1.00 0.00 C
|
| 100 |
+
ATOM 99 NE2 HIS A 12 34.201 -2.347 25.236 1.00 0.00 N
|
| 101 |
+
ATOM 100 N MET A 13 28.719 -3.694 28.947 1.00 0.00 N
|
| 102 |
+
ATOM 101 CA MET A 13 27.294 -3.726 29.265 1.00 0.00 C
|
| 103 |
+
ATOM 102 C MET A 13 27.070 -3.660 30.772 1.00 0.00 C
|
| 104 |
+
ATOM 103 CB MET A 13 26.643 -4.988 28.694 1.00 0.00 C
|
| 105 |
+
ATOM 104 O MET A 13 27.689 -4.409 31.528 1.00 0.00 O
|
| 106 |
+
ATOM 105 CG MET A 13 26.762 -5.110 27.183 1.00 0.00 C
|
| 107 |
+
ATOM 106 SD MET A 13 26.006 -3.688 26.303 1.00 0.00 S
|
| 108 |
+
ATOM 107 CE MET A 13 24.279 -3.867 26.830 1.00 0.00 C
|
| 109 |
+
ATOM 108 N ASP A 14 26.264 -2.782 31.194 1.00 0.00 N
|
| 110 |
+
ATOM 109 CA ASP A 14 25.741 -2.710 32.555 1.00 0.00 C
|
| 111 |
+
ATOM 110 C ASP A 14 24.303 -2.196 32.564 1.00 0.00 C
|
| 112 |
+
ATOM 111 CB ASP A 14 26.626 -1.813 33.422 1.00 0.00 C
|
| 113 |
+
ATOM 112 O ASP A 14 24.067 -1.000 32.748 1.00 0.00 O
|
| 114 |
+
ATOM 113 CG ASP A 14 26.181 -1.767 34.875 1.00 0.00 C
|
| 115 |
+
ATOM 114 OD1 ASP A 14 25.497 -2.706 35.332 1.00 0.00 O
|
| 116 |
+
ATOM 115 OD2 ASP A 14 26.516 -0.780 35.565 1.00 0.00 O
|
| 117 |
+
ATOM 116 N SER A 15 23.328 -3.118 32.369 1.00 0.00 N
|
| 118 |
+
ATOM 117 CA SER A 15 21.927 -2.722 32.263 1.00 0.00 C
|
| 119 |
+
ATOM 118 C SER A 15 21.325 -2.443 33.635 1.00 0.00 C
|
| 120 |
+
ATOM 119 CB SER A 15 21.117 -3.807 31.553 1.00 0.00 C
|
| 121 |
+
ATOM 120 O SER A 15 20.194 -1.962 33.737 1.00 0.00 O
|
| 122 |
+
ATOM 121 OG SER A 15 21.366 -5.079 32.129 1.00 0.00 O
|
| 123 |
+
ATOM 122 N SER A 16 22.026 -2.601 34.639 1.00 0.00 N
|
| 124 |
+
ATOM 123 CA SER A 16 21.573 -2.310 35.996 1.00 0.00 C
|
| 125 |
+
ATOM 124 C SER A 16 21.910 -0.877 36.395 1.00 0.00 C
|
| 126 |
+
ATOM 125 CB SER A 16 22.201 -3.286 36.992 1.00 0.00 C
|
| 127 |
+
ATOM 126 O SER A 16 23.077 -0.482 36.387 1.00 0.00 O
|
| 128 |
+
ATOM 127 OG SER A 16 21.849 -2.944 38.322 1.00 0.00 O
|
| 129 |
+
ATOM 128 N THR A 17 21.018 0.156 36.069 1.00 0.00 N
|
| 130 |
+
ATOM 129 CA THR A 17 21.119 1.611 36.093 1.00 0.00 C
|
| 131 |
+
ATOM 130 C THR A 17 21.401 2.110 37.507 1.00 0.00 C
|
| 132 |
+
ATOM 131 CB THR A 17 19.833 2.269 35.560 1.00 0.00 C
|
| 133 |
+
ATOM 132 O THR A 17 21.790 3.264 37.698 1.00 0.00 O
|
| 134 |
+
ATOM 133 CG2 THR A 17 19.598 1.913 34.096 1.00 0.00 C
|
| 135 |
+
ATOM 134 OG1 THR A 17 18.716 1.819 36.336 1.00 0.00 O
|
| 136 |
+
ATOM 135 N SER A 18 21.002 1.474 38.531 1.00 0.00 N
|
| 137 |
+
ATOM 136 CA SER A 18 20.812 2.127 39.823 1.00 0.00 C
|
| 138 |
+
ATOM 137 C SER A 18 22.131 2.653 40.376 1.00 0.00 C
|
| 139 |
+
ATOM 138 CB SER A 18 20.180 1.160 40.824 1.00 0.00 C
|
| 140 |
+
ATOM 139 O SER A 18 22.161 3.686 41.049 1.00 0.00 O
|
| 141 |
+
ATOM 140 OG SER A 18 20.988 0.006 40.988 1.00 0.00 O
|
| 142 |
+
ATOM 141 N ALA A 19 23.236 2.186 39.918 1.00 0.00 N
|
| 143 |
+
ATOM 142 CA ALA A 19 24.491 2.586 40.550 1.00 0.00 C
|
| 144 |
+
ATOM 143 C ALA A 19 25.259 3.568 39.671 1.00 0.00 C
|
| 145 |
+
ATOM 144 CB ALA A 19 25.350 1.360 40.850 1.00 0.00 C
|
| 146 |
+
ATOM 145 O ALA A 19 26.273 4.130 40.094 1.00 0.00 O
|
| 147 |
+
ATOM 146 N ALA A 20 24.765 3.916 38.578 1.00 0.00 N
|
| 148 |
+
ATOM 147 CA ALA A 20 25.540 4.777 37.690 1.00 0.00 C
|
| 149 |
+
ATOM 148 C ALA A 20 25.671 6.184 38.267 1.00 0.00 C
|
| 150 |
+
ATOM 149 CB ALA A 20 24.899 4.830 36.306 1.00 0.00 C
|
| 151 |
+
ATOM 150 O ALA A 20 26.579 6.932 37.896 1.00 0.00 O
|
| 152 |
+
ATOM 151 N SER A 21 24.898 6.485 39.339 1.00 0.00 N
|
| 153 |
+
ATOM 152 CA SER A 21 24.947 7.844 39.868 1.00 0.00 C
|
| 154 |
+
ATOM 153 C SER A 21 26.038 7.987 40.924 1.00 0.00 C
|
| 155 |
+
ATOM 154 CB SER A 21 23.594 8.238 40.463 1.00 0.00 C
|
| 156 |
+
ATOM 155 O SER A 21 26.319 9.094 41.388 1.00 0.00 O
|
| 157 |
+
ATOM 156 OG SER A 21 23.175 7.289 41.428 1.00 0.00 O
|
| 158 |
+
ATOM 157 N SER A 22 26.618 6.885 41.170 1.00 0.00 N
|
| 159 |
+
ATOM 158 CA SER A 22 27.656 6.989 42.190 1.00 0.00 C
|
| 160 |
+
ATOM 159 C SER A 22 28.975 7.466 41.591 1.00 0.00 C
|
| 161 |
+
ATOM 160 CB SER A 22 27.860 5.642 42.886 1.00 0.00 C
|
| 162 |
+
ATOM 161 O SER A 22 29.363 7.030 40.505 1.00 0.00 O
|
| 163 |
+
ATOM 162 OG SER A 22 29.032 5.660 43.683 1.00 0.00 O
|
| 164 |
+
ATOM 163 N SER A 23 29.650 8.398 42.255 1.00 0.00 N
|
| 165 |
+
ATOM 164 CA SER A 23 30.960 8.893 41.845 1.00 0.00 C
|
| 166 |
+
ATOM 165 C SER A 23 31.998 7.775 41.844 1.00 0.00 C
|
| 167 |
+
ATOM 166 CB SER A 23 31.418 10.026 42.765 1.00 0.00 C
|
| 168 |
+
ATOM 167 O SER A 23 33.021 7.871 41.162 1.00 0.00 O
|
| 169 |
+
ATOM 168 OG SER A 23 31.473 9.589 44.112 1.00 0.00 O
|
| 170 |
+
ATOM 169 N ASN A 24 31.658 6.704 42.552 1.00 0.00 N
|
| 171 |
+
ATOM 170 CA ASN A 24 32.590 5.588 42.666 1.00 0.00 C
|
| 172 |
+
ATOM 171 C ASN A 24 32.276 4.491 41.651 1.00 0.00 C
|
| 173 |
+
ATOM 172 CB ASN A 24 32.576 5.018 44.085 1.00 0.00 C
|
| 174 |
+
ATOM 173 O ASN A 24 32.839 3.397 41.721 1.00 0.00 O
|
| 175 |
+
ATOM 174 CG ASN A 24 33.825 4.221 44.406 1.00 0.00 C
|
| 176 |
+
ATOM 175 ND2 ASN A 24 33.681 3.211 45.257 1.00 0.00 N
|
| 177 |
+
ATOM 176 OD1 ASN A 24 34.909 4.510 43.896 1.00 0.00 O
|
| 178 |
+
ATOM 177 N TYR A 25 31.275 4.669 40.831 1.00 0.00 N
|
| 179 |
+
ATOM 178 CA TYR A 25 30.799 3.672 39.878 1.00 0.00 C
|
| 180 |
+
ATOM 179 C TYR A 25 31.956 3.086 39.079 1.00 0.00 C
|
| 181 |
+
ATOM 180 CB TYR A 25 29.766 4.288 38.928 1.00 0.00 C
|
| 182 |
+
ATOM 181 O TYR A 25 32.122 1.866 39.020 1.00 0.00 O
|
| 183 |
+
ATOM 182 CG TYR A 25 29.395 3.391 37.772 1.00 0.00 C
|
| 184 |
+
ATOM 183 CD1 TYR A 25 30.043 3.502 36.544 1.00 0.00 C
|
| 185 |
+
ATOM 184 CD2 TYR A 25 28.397 2.432 37.905 1.00 0.00 C
|
| 186 |
+
ATOM 185 CE1 TYR A 25 29.704 2.678 35.475 1.00 0.00 C
|
| 187 |
+
ATOM 186 CE2 TYR A 25 28.049 1.604 36.843 1.00 0.00 C
|
| 188 |
+
ATOM 187 OH TYR A 25 28.367 0.917 34.579 1.00 0.00 O
|
| 189 |
+
ATOM 188 CZ TYR A 25 28.708 1.734 35.634 1.00 0.00 C
|
| 190 |
+
ATOM 189 N CYS A 26 32.713 3.985 38.483 1.00 0.00 N
|
| 191 |
+
ATOM 190 CA CYS A 26 33.776 3.522 37.597 1.00 0.00 C
|
| 192 |
+
ATOM 191 C CYS A 26 34.805 2.701 38.364 1.00 0.00 C
|
| 193 |
+
ATOM 192 CB CYS A 26 34.458 4.707 36.915 1.00 0.00 C
|
| 194 |
+
ATOM 193 O CYS A 26 35.233 1.643 37.898 1.00 0.00 O
|
| 195 |
+
ATOM 194 SG CYS A 26 33.513 5.401 35.542 1.00 0.00 S
|
| 196 |
+
ATOM 195 N ASN A 27 35.231 3.170 39.562 1.00 0.00 N
|
| 197 |
+
ATOM 196 CA ASN A 27 36.208 2.412 40.334 1.00 0.00 C
|
| 198 |
+
ATOM 197 C ASN A 27 35.702 1.009 40.656 1.00 0.00 C
|
| 199 |
+
ATOM 198 CB ASN A 27 36.570 3.154 41.623 1.00 0.00 C
|
| 200 |
+
ATOM 199 O ASN A 27 36.452 0.036 40.558 1.00 0.00 O
|
| 201 |
+
ATOM 200 CG ASN A 27 37.366 4.418 41.365 1.00 0.00 C
|
| 202 |
+
ATOM 201 ND2 ASN A 27 37.202 5.410 42.232 1.00 0.00 N
|
| 203 |
+
ATOM 202 OD1 ASN A 27 38.121 4.503 40.392 1.00 0.00 O
|
| 204 |
+
ATOM 203 N GLN A 28 34.459 0.893 40.985 1.00 0.00 N
|
| 205 |
+
ATOM 204 CA GLN A 28 33.859 -0.389 41.341 1.00 0.00 C
|
| 206 |
+
ATOM 205 C GLN A 28 33.703 -1.283 40.114 1.00 0.00 C
|
| 207 |
+
ATOM 206 CB GLN A 28 32.502 -0.179 42.014 1.00 0.00 C
|
| 208 |
+
ATOM 207 O GLN A 28 34.081 -2.456 40.142 1.00 0.00 O
|
| 209 |
+
ATOM 208 CG GLN A 28 32.592 0.449 43.398 1.00 0.00 C
|
| 210 |
+
ATOM 209 CD GLN A 28 31.231 0.664 44.034 1.00 0.00 C
|
| 211 |
+
ATOM 210 NE2 GLN A 28 31.215 1.317 45.191 1.00 0.00 N
|
| 212 |
+
ATOM 211 OE1 GLN A 28 30.204 0.250 43.490 1.00 0.00 O
|
| 213 |
+
ATOM 212 N MET A 29 33.217 -0.693 39.054 1.00 0.00 N
|
| 214 |
+
ATOM 213 CA MET A 29 32.883 -1.506 37.887 1.00 0.00 C
|
| 215 |
+
ATOM 214 C MET A 29 34.145 -1.956 37.159 1.00 0.00 C
|
| 216 |
+
ATOM 215 CB MET A 29 31.977 -0.728 36.931 1.00 0.00 C
|
| 217 |
+
ATOM 216 O MET A 29 34.228 -3.096 36.698 1.00 0.00 O
|
| 218 |
+
ATOM 217 CG MET A 29 30.542 -0.599 37.416 1.00 0.00 C
|
| 219 |
+
ATOM 218 SD MET A 29 29.695 -2.221 37.547 1.00 0.00 S
|
| 220 |
+
ATOM 219 CE MET A 29 29.404 -2.573 35.791 1.00 0.00 C
|
| 221 |
+
ATOM 220 N MET A 30 35.168 -1.012 37.027 1.00 0.00 N
|
| 222 |
+
ATOM 221 CA MET A 30 36.417 -1.398 36.376 1.00 0.00 C
|
| 223 |
+
ATOM 222 C MET A 30 37.056 -2.585 37.086 1.00 0.00 C
|
| 224 |
+
ATOM 223 CB MET A 30 37.393 -0.220 36.342 1.00 0.00 C
|
| 225 |
+
ATOM 224 O MET A 30 37.526 -3.522 36.438 1.00 0.00 O
|
| 226 |
+
ATOM 225 CG MET A 30 36.872 0.986 35.577 1.00 0.00 C
|
| 227 |
+
ATOM 226 SD MET A 30 36.792 0.690 33.767 1.00 0.00 S
|
| 228 |
+
ATOM 227 CE MET A 30 38.546 0.874 33.336 1.00 0.00 C
|
| 229 |
+
ATOM 228 N LYS A 31 36.990 -2.615 38.368 1.00 0.00 N
|
| 230 |
+
ATOM 229 CA LYS A 31 37.560 -3.695 39.167 1.00 0.00 C
|
| 231 |
+
ATOM 230 C LYS A 31 36.704 -4.956 39.080 1.00 0.00 C
|
| 232 |
+
ATOM 231 CB LYS A 31 37.710 -3.262 40.626 1.00 0.00 C
|
| 233 |
+
ATOM 232 O LYS A 31 37.220 -6.047 38.829 1.00 0.00 O
|
| 234 |
+
ATOM 233 CG LYS A 31 38.442 -4.271 41.499 1.00 0.00 C
|
| 235 |
+
ATOM 234 CD LYS A 31 38.653 -3.740 42.911 1.00 0.00 C
|
| 236 |
+
ATOM 235 CE LYS A 31 39.388 -4.748 43.784 1.00 0.00 C
|
| 237 |
+
ATOM 236 NZ LYS A 31 39.623 -4.219 45.162 1.00 0.00 N
|
| 238 |
+
ATOM 237 N SER A 32 35.385 -4.872 39.244 1.00 0.00 N
|
| 239 |
+
ATOM 238 CA SER A 32 34.498 -6.029 39.291 1.00 0.00 C
|
| 240 |
+
ATOM 239 C SER A 32 34.462 -6.752 37.948 1.00 0.00 C
|
| 241 |
+
ATOM 240 CB SER A 32 33.084 -5.607 39.689 1.00 0.00 C
|
| 242 |
+
ATOM 241 O SER A 32 34.242 -7.964 37.895 1.00 0.00 O
|
| 243 |
+
ATOM 242 OG SER A 32 32.447 -4.915 38.627 1.00 0.00 O
|
| 244 |
+
ATOM 243 N ARG A 33 34.744 -5.993 36.871 1.00 0.00 N
|
| 245 |
+
ATOM 244 CA ARG A 33 34.719 -6.599 35.544 1.00 0.00 C
|
| 246 |
+
ATOM 245 C ARG A 33 36.120 -7.010 35.103 1.00 0.00 C
|
| 247 |
+
ATOM 246 CB ARG A 33 34.111 -5.635 34.524 1.00 0.00 C
|
| 248 |
+
ATOM 247 O ARG A 33 36.337 -7.342 33.936 1.00 0.00 O
|
| 249 |
+
ATOM 248 CG ARG A 33 32.672 -5.246 34.825 1.00 0.00 C
|
| 250 |
+
ATOM 249 CD ARG A 33 31.725 -6.429 34.674 1.00 0.00 C
|
| 251 |
+
ATOM 250 NE ARG A 33 30.335 -6.037 34.887 1.00 0.00 N
|
| 252 |
+
ATOM 251 NH1 ARG A 33 29.638 -6.580 32.752 1.00 0.00 N
|
| 253 |
+
ATOM 252 NH2 ARG A 33 28.144 -5.733 34.271 1.00 0.00 N
|
| 254 |
+
ATOM 253 CZ ARG A 33 29.375 -6.117 33.970 1.00 0.00 C
|
| 255 |
+
ATOM 254 N ASN A 34 37.043 -6.985 36.045 1.00 0.00 N
|
| 256 |
+
ATOM 255 CA ASN A 34 38.416 -7.430 35.827 1.00 0.00 C
|
| 257 |
+
ATOM 256 C ASN A 34 39.079 -6.664 34.686 1.00 0.00 C
|
| 258 |
+
ATOM 257 CB ASN A 34 38.455 -8.934 35.549 1.00 0.00 C
|
| 259 |
+
ATOM 258 O ASN A 34 39.838 -7.239 33.904 1.00 0.00 O
|
| 260 |
+
ATOM 259 CG ASN A 34 38.177 -9.764 36.787 1.00 0.00 C
|
| 261 |
+
ATOM 260 ND2 ASN A 34 37.387 -10.819 36.629 1.00 0.00 N
|
| 262 |
+
ATOM 261 OD1 ASN A 34 38.668 -9.459 37.877 1.00 0.00 O
|
| 263 |
+
ATOM 262 N LEU A 35 38.819 -5.381 34.577 1.00 0.00 N
|
| 264 |
+
ATOM 263 CA LEU A 35 39.410 -4.550 33.534 1.00 0.00 C
|
| 265 |
+
ATOM 264 C LEU A 35 40.708 -3.912 34.017 1.00 0.00 C
|
| 266 |
+
ATOM 265 CB LEU A 35 38.426 -3.462 33.094 1.00 0.00 C
|
| 267 |
+
ATOM 266 O LEU A 35 41.398 -3.239 33.248 1.00 0.00 O
|
| 268 |
+
ATOM 267 CG LEU A 35 37.092 -3.945 32.524 1.00 0.00 C
|
| 269 |
+
ATOM 268 CD1 LEU A 35 36.211 -2.756 32.157 1.00 0.00 C
|
| 270 |
+
ATOM 269 CD2 LEU A 35 37.321 -4.842 31.312 1.00 0.00 C
|
| 271 |
+
ATOM 270 N THR A 36 41.045 -4.170 35.270 1.00 0.00 N
|
| 272 |
+
ATOM 271 CA THR A 36 42.254 -3.616 35.869 1.00 0.00 C
|
| 273 |
+
ATOM 272 C THR A 36 43.144 -4.728 36.418 1.00 0.00 C
|
| 274 |
+
ATOM 273 CB THR A 36 41.915 -2.623 36.997 1.00 0.00 C
|
| 275 |
+
ATOM 274 O THR A 36 43.936 -4.501 37.335 1.00 0.00 O
|
| 276 |
+
ATOM 275 CG2 THR A 36 41.106 -1.444 36.467 1.00 0.00 C
|
| 277 |
+
ATOM 276 OG1 THR A 36 41.151 -3.298 38.005 1.00 0.00 O
|
| 278 |
+
ATOM 277 N LYS A 37 42.933 -5.978 35.990 1.00 0.00 N
|
| 279 |
+
ATOM 278 CA LYS A 37 43.656 -7.135 36.512 1.00 0.00 C
|
| 280 |
+
ATOM 279 C LYS A 37 45.158 -6.994 36.281 1.00 0.00 C
|
| 281 |
+
ATOM 280 CB LYS A 37 43.145 -8.423 35.866 1.00 0.00 C
|
| 282 |
+
ATOM 281 O LYS A 37 45.958 -7.282 37.173 1.00 0.00 O
|
| 283 |
+
ATOM 282 CG LYS A 37 43.768 -9.691 36.433 1.00 0.00 C
|
| 284 |
+
ATOM 283 CD LYS A 37 43.207 -10.938 35.763 1.00 0.00 C
|
| 285 |
+
ATOM 284 CE LYS A 37 43.912 -12.198 36.247 1.00 0.00 C
|
| 286 |
+
ATOM 285 NZ LYS A 37 43.372 -13.424 35.586 1.00 0.00 N
|
| 287 |
+
ATOM 286 N ASP A 38 45.677 -6.501 35.206 1.00 0.00 N
|
| 288 |
+
ATOM 287 CA ASP A 38 47.096 -6.457 34.866 1.00 0.00 C
|
| 289 |
+
ATOM 288 C ASP A 38 47.612 -5.020 34.841 1.00 0.00 C
|
| 290 |
+
ATOM 289 CB ASP A 38 47.345 -7.128 33.513 1.00 0.00 C
|
| 291 |
+
ATOM 290 O ASP A 38 48.774 -4.766 35.162 1.00 0.00 O
|
| 292 |
+
ATOM 291 CG ASP A 38 47.060 -8.619 33.530 1.00 0.00 C
|
| 293 |
+
ATOM 292 OD1 ASP A 38 47.468 -9.307 34.490 1.00 0.00 O
|
| 294 |
+
ATOM 293 OD2 ASP A 38 46.424 -9.111 32.572 1.00 0.00 O
|
| 295 |
+
ATOM 294 N ARG A 39 46.887 -4.094 34.499 1.00 0.00 N
|
| 296 |
+
ATOM 295 CA ARG A 39 47.191 -2.671 34.400 1.00 0.00 C
|
| 297 |
+
ATOM 296 C ARG A 39 45.925 -1.831 34.533 1.00 0.00 C
|
| 298 |
+
ATOM 297 CB ARG A 39 47.889 -2.360 33.074 1.00 0.00 C
|
| 299 |
+
ATOM 298 O ARG A 39 44.813 -2.354 34.438 1.00 0.00 O
|
| 300 |
+
ATOM 299 CG ARG A 39 47.019 -2.599 31.849 1.00 0.00 C
|
| 301 |
+
ATOM 300 CD ARG A 39 47.771 -2.306 30.558 1.00 0.00 C
|
| 302 |
+
ATOM 301 NE ARG A 39 46.931 -2.525 29.384 1.00 0.00 N
|
| 303 |
+
ATOM 302 NH1 ARG A 39 48.307 -1.374 27.929 1.00 0.00 N
|
| 304 |
+
ATOM 303 NH2 ARG A 39 46.371 -2.333 27.165 1.00 0.00 N
|
| 305 |
+
ATOM 304 CZ ARG A 39 47.205 -2.077 28.162 1.00 0.00 C
|
| 306 |
+
ATOM 305 N CYS A 40 46.130 -0.636 34.792 1.00 0.00 N
|
| 307 |
+
ATOM 306 CA CYS A 40 44.986 0.269 34.772 1.00 0.00 C
|
| 308 |
+
ATOM 307 C CYS A 40 44.544 0.559 33.343 1.00 0.00 C
|
| 309 |
+
ATOM 308 CB CYS A 40 45.324 1.577 35.486 1.00 0.00 C
|
| 310 |
+
ATOM 309 O CYS A 40 45.312 1.109 32.551 1.00 0.00 O
|
| 311 |
+
ATOM 310 SG CYS A 40 45.791 1.362 37.217 1.00 0.00 S
|
| 312 |
+
ATOM 311 N LYS A 41 43.340 0.092 32.953 1.00 0.00 N
|
| 313 |
+
ATOM 312 CA LYS A 41 42.793 0.426 31.642 1.00 0.00 C
|
| 314 |
+
ATOM 313 C LYS A 41 42.484 1.917 31.539 1.00 0.00 C
|
| 315 |
+
ATOM 314 CB LYS A 41 41.531 -0.392 31.362 1.00 0.00 C
|
| 316 |
+
ATOM 315 O LYS A 41 41.705 2.450 32.332 1.00 0.00 O
|
| 317 |
+
ATOM 316 CG LYS A 41 40.976 -0.212 29.957 1.00 0.00 C
|
| 318 |
+
ATOM 317 CD LYS A 41 39.843 -1.190 29.673 1.00 0.00 C
|
| 319 |
+
ATOM 318 CE LYS A 41 39.266 -0.991 28.278 1.00 0.00 C
|
| 320 |
+
ATOM 319 NZ LYS A 41 38.236 -2.021 27.953 1.00 0.00 N
|
| 321 |
+
ATOM 320 N PRO A 42 43.038 2.602 30.597 1.00 0.00 N
|
| 322 |
+
ATOM 321 CA PRO A 42 42.936 4.063 30.587 1.00 0.00 C
|
| 323 |
+
ATOM 322 C PRO A 42 41.500 4.554 30.413 1.00 0.00 C
|
| 324 |
+
ATOM 323 CB PRO A 42 43.799 4.468 29.389 1.00 0.00 C
|
| 325 |
+
ATOM 324 O PRO A 42 41.114 5.565 31.006 1.00 0.00 O
|
| 326 |
+
ATOM 325 CG PRO A 42 44.806 3.372 29.256 1.00 0.00 C
|
| 327 |
+
ATOM 326 CD PRO A 42 44.170 2.084 29.694 1.00 0.00 C
|
| 328 |
+
ATOM 327 N VAL A 43 40.716 3.857 29.605 1.00 0.00 N
|
| 329 |
+
ATOM 328 CA VAL A 43 39.356 4.312 29.340 1.00 0.00 C
|
| 330 |
+
ATOM 329 C VAL A 43 38.451 3.111 29.082 1.00 0.00 C
|
| 331 |
+
ATOM 330 CB VAL A 43 39.306 5.284 28.140 1.00 0.00 C
|
| 332 |
+
ATOM 331 O VAL A 43 38.881 2.115 28.496 1.00 0.00 O
|
| 333 |
+
ATOM 332 CG1 VAL A 43 37.865 5.686 27.830 1.00 0.00 C
|
| 334 |
+
ATOM 333 CG2 VAL A 43 40.160 6.520 28.419 1.00 0.00 C
|
| 335 |
+
ATOM 334 N ASN A 44 37.227 3.223 29.524 1.00 0.00 N
|
| 336 |
+
ATOM 335 CA ASN A 44 36.157 2.283 29.209 1.00 0.00 C
|
| 337 |
+
ATOM 336 C ASN A 44 34.790 2.960 29.236 1.00 0.00 C
|
| 338 |
+
ATOM 337 CB ASN A 44 36.182 1.098 30.177 1.00 0.00 C
|
| 339 |
+
ATOM 338 O ASN A 44 34.610 3.979 29.907 1.00 0.00 O
|
| 340 |
+
ATOM 339 CG ASN A 44 35.366 -0.079 29.679 1.00 0.00 C
|
| 341 |
+
ATOM 340 ND2 ASN A 44 34.156 -0.228 30.207 1.00 0.00 N
|
| 342 |
+
ATOM 341 OD1 ASN A 44 35.819 -0.849 28.828 1.00 0.00 O
|
| 343 |
+
ATOM 342 N THR A 45 33.886 2.442 28.479 1.00 0.00 N
|
| 344 |
+
ATOM 343 CA THR A 45 32.510 2.928 28.463 1.00 0.00 C
|
| 345 |
+
ATOM 344 C THR A 45 31.537 1.809 28.819 1.00 0.00 C
|
| 346 |
+
ATOM 345 CB THR A 45 32.141 3.515 27.088 1.00 0.00 C
|
| 347 |
+
ATOM 346 O THR A 45 31.606 0.716 28.253 1.00 0.00 O
|
| 348 |
+
ATOM 347 CG2 THR A 45 30.713 4.050 27.084 1.00 0.00 C
|
| 349 |
+
ATOM 348 OG1 THR A 45 33.041 4.586 26.774 1.00 0.00 O
|
| 350 |
+
ATOM 349 N PHE A 46 30.655 2.050 29.744 1.00 0.00 N
|
| 351 |
+
ATOM 350 CA PHE A 46 29.571 1.127 30.065 1.00 0.00 C
|
| 352 |
+
ATOM 351 C PHE A 46 28.246 1.635 29.511 1.00 0.00 C
|
| 353 |
+
ATOM 352 CB PHE A 46 29.465 0.926 31.580 1.00 0.00 C
|
| 354 |
+
ATOM 353 O PHE A 46 27.891 2.799 29.704 1.00 0.00 O
|
| 355 |
+
ATOM 354 CG PHE A 46 30.650 0.222 32.183 1.00 0.00 C
|
| 356 |
+
ATOM 355 CD1 PHE A 46 30.794 -1.155 32.062 1.00 0.00 C
|
| 357 |
+
ATOM 356 CD2 PHE A 46 31.620 0.937 32.873 1.00 0.00 C
|
| 358 |
+
ATOM 357 CE1 PHE A 46 31.890 -1.810 32.619 1.00 0.00 C
|
| 359 |
+
ATOM 358 CE2 PHE A 46 32.718 0.290 33.432 1.00 0.00 C
|
| 360 |
+
ATOM 359 CZ PHE A 46 32.851 -1.084 33.306 1.00 0.00 C
|
| 361 |
+
ATOM 360 N VAL A 47 27.578 0.762 28.785 1.00 0.00 N
|
| 362 |
+
ATOM 361 CA VAL A 47 26.272 1.076 28.214 1.00 0.00 C
|
| 363 |
+
ATOM 362 C VAL A 47 25.168 0.538 29.122 1.00 0.00 C
|
| 364 |
+
ATOM 363 CB VAL A 47 26.121 0.496 26.791 1.00 0.00 C
|
| 365 |
+
ATOM 364 O VAL A 47 25.183 -0.636 29.499 1.00 0.00 O
|
| 366 |
+
ATOM 365 CG1 VAL A 47 24.793 0.927 26.169 1.00 0.00 C
|
| 367 |
+
ATOM 366 CG2 VAL A 47 27.292 0.930 25.911 1.00 0.00 C
|
| 368 |
+
ATOM 367 N HIS A 48 24.189 1.341 29.448 1.00 0.00 N
|
| 369 |
+
ATOM 368 CA HIS A 48 23.206 0.994 30.467 1.00 0.00 C
|
| 370 |
+
ATOM 369 C HIS A 48 21.893 0.542 29.837 1.00 0.00 C
|
| 371 |
+
ATOM 370 CB HIS A 48 22.960 2.182 31.399 1.00 0.00 C
|
| 372 |
+
ATOM 371 O HIS A 48 20.921 0.271 30.546 1.00 0.00 O
|
| 373 |
+
ATOM 372 CG HIS A 48 24.179 2.621 32.147 1.00 0.00 C
|
| 374 |
+
ATOM 373 CD2 HIS A 48 24.827 3.809 32.171 1.00 0.00 C
|
| 375 |
+
ATOM 374 ND1 HIS A 48 24.873 1.785 32.995 1.00 0.00 N
|
| 376 |
+
ATOM 375 CE1 HIS A 48 25.899 2.443 33.509 1.00 0.00 C
|
| 377 |
+
ATOM 376 NE2 HIS A 48 25.893 3.673 33.025 1.00 0.00 N
|
| 378 |
+
ATOM 377 N GLU A 49 21.899 0.380 28.538 1.00 0.00 N
|
| 379 |
+
ATOM 378 CA GLU A 49 20.753 -0.146 27.803 1.00 0.00 C
|
| 380 |
+
ATOM 379 C GLU A 49 20.736 -1.673 27.825 1.00 0.00 C
|
| 381 |
+
ATOM 380 CB GLU A 49 20.763 0.358 26.358 1.00 0.00 C
|
| 382 |
+
ATOM 381 O GLU A 49 21.713 -2.303 28.233 1.00 0.00 O
|
| 383 |
+
ATOM 382 CG GLU A 49 20.805 1.874 26.236 1.00 0.00 C
|
| 384 |
+
ATOM 383 CD GLU A 49 19.585 2.558 26.835 1.00 0.00 C
|
| 385 |
+
ATOM 384 OE1 GLU A 49 18.506 1.925 26.902 1.00 0.00 O
|
| 386 |
+
ATOM 385 OE2 GLU A 49 19.709 3.735 27.239 1.00 0.00 O
|
| 387 |
+
ATOM 386 N SER A 50 19.612 -2.207 27.441 1.00 0.00 N
|
| 388 |
+
ATOM 387 CA SER A 50 19.542 -3.661 27.346 1.00 0.00 C
|
| 389 |
+
ATOM 388 C SER A 50 20.475 -4.189 26.260 1.00 0.00 C
|
| 390 |
+
ATOM 389 CB SER A 50 18.109 -4.112 27.061 1.00 0.00 C
|
| 391 |
+
ATOM 390 O SER A 50 20.787 -3.478 25.303 1.00 0.00 O
|
| 392 |
+
ATOM 391 OG SER A 50 17.735 -3.791 25.733 1.00 0.00 O
|
| 393 |
+
ATOM 392 N LEU A 51 20.938 -5.364 26.455 1.00 0.00 N
|
| 394 |
+
ATOM 393 CA LEU A 51 21.784 -6.004 25.455 1.00 0.00 C
|
| 395 |
+
ATOM 394 C LEU A 51 21.081 -6.061 24.104 1.00 0.00 C
|
| 396 |
+
ATOM 395 CB LEU A 51 22.169 -7.416 25.903 1.00 0.00 C
|
| 397 |
+
ATOM 396 O LEU A 51 21.708 -5.848 23.062 1.00 0.00 O
|
| 398 |
+
ATOM 397 CG LEU A 51 23.020 -8.229 24.927 1.00 0.00 C
|
| 399 |
+
ATOM 398 CD1 LEU A 51 24.312 -7.485 24.603 1.00 0.00 C
|
| 400 |
+
ATOM 399 CD2 LEU A 51 23.323 -9.610 25.501 1.00 0.00 C
|
| 401 |
+
ATOM 400 N ALA A 52 19.784 -6.349 24.113 1.00 0.00 N
|
| 402 |
+
ATOM 401 CA ALA A 52 19.011 -6.408 22.876 1.00 0.00 C
|
| 403 |
+
ATOM 402 C ALA A 52 19.056 -5.074 22.137 1.00 0.00 C
|
| 404 |
+
ATOM 403 CB ALA A 52 17.566 -6.802 23.170 1.00 0.00 C
|
| 405 |
+
ATOM 404 O ALA A 52 19.199 -5.039 20.912 1.00 0.00 O
|
| 406 |
+
ATOM 405 N ASP A 53 18.942 -3.971 22.860 1.00 0.00 N
|
| 407 |
+
ATOM 406 CA ASP A 53 18.991 -2.646 22.252 1.00 0.00 C
|
| 408 |
+
ATOM 407 C ASP A 53 20.367 -2.367 21.652 1.00 0.00 C
|
| 409 |
+
ATOM 408 CB ASP A 53 18.637 -1.569 23.279 1.00 0.00 C
|
| 410 |
+
ATOM 409 O ASP A 53 20.473 -1.794 20.566 1.00 0.00 O
|
| 411 |
+
ATOM 410 CG ASP A 53 17.165 -1.568 23.654 1.00 0.00 C
|
| 412 |
+
ATOM 411 OD1 ASP A 53 16.330 -2.029 22.846 1.00 0.00 O
|
| 413 |
+
ATOM 412 OD2 ASP A 53 16.838 -1.100 24.766 1.00 0.00 O
|
| 414 |
+
ATOM 413 N VAL A 54 21.409 -2.797 22.335 1.00 0.00 N
|
| 415 |
+
ATOM 414 CA VAL A 54 22.762 -2.555 21.845 1.00 0.00 C
|
| 416 |
+
ATOM 415 C VAL A 54 23.043 -3.448 20.638 1.00 0.00 C
|
| 417 |
+
ATOM 416 CB VAL A 54 23.818 -2.802 22.946 1.00 0.00 C
|
| 418 |
+
ATOM 417 O VAL A 54 23.665 -3.012 19.667 1.00 0.00 O
|
| 419 |
+
ATOM 418 CG1 VAL A 54 25.231 -2.694 22.375 1.00 0.00 C
|
| 420 |
+
ATOM 419 CG2 VAL A 54 23.627 -1.817 24.098 1.00 0.00 C
|
| 421 |
+
ATOM 420 N GLN A 55 22.545 -4.656 20.623 1.00 0.00 N
|
| 422 |
+
ATOM 421 CA GLN A 55 22.713 -5.544 19.477 1.00 0.00 C
|
| 423 |
+
ATOM 422 C GLN A 55 21.978 -5.008 18.252 1.00 0.00 C
|
| 424 |
+
ATOM 423 CB GLN A 55 22.217 -6.952 19.812 1.00 0.00 C
|
| 425 |
+
ATOM 424 O GLN A 55 22.434 -5.186 17.121 1.00 0.00 O
|
| 426 |
+
ATOM 425 CG GLN A 55 23.148 -7.729 20.733 1.00 0.00 C
|
| 427 |
+
ATOM 426 CD GLN A 55 22.580 -9.075 21.142 1.00 0.00 C
|
| 428 |
+
ATOM 427 NE2 GLN A 55 23.459 -10.004 21.504 1.00 0.00 N
|
| 429 |
+
ATOM 428 OE1 GLN A 55 21.362 -9.278 21.132 1.00 0.00 O
|
| 430 |
+
ATOM 429 N ALA A 56 20.873 -4.359 18.522 1.00 0.00 N
|
| 431 |
+
ATOM 430 CA ALA A 56 20.075 -3.811 17.429 1.00 0.00 C
|
| 432 |
+
ATOM 431 C ALA A 56 20.836 -2.713 16.691 1.00 0.00 C
|
| 433 |
+
ATOM 432 CB ALA A 56 18.748 -3.273 17.957 1.00 0.00 C
|
| 434 |
+
ATOM 433 O ALA A 56 20.491 -2.362 15.561 1.00 0.00 O
|
| 435 |
+
ATOM 434 N VAL A 57 21.885 -2.113 17.305 1.00 0.00 N
|
| 436 |
+
ATOM 435 CA VAL A 57 22.675 -1.053 16.686 1.00 0.00 C
|
| 437 |
+
ATOM 436 C VAL A 57 23.350 -1.581 15.423 1.00 0.00 C
|
| 438 |
+
ATOM 437 CB VAL A 57 23.734 -0.492 17.661 1.00 0.00 C
|
| 439 |
+
ATOM 438 O VAL A 57 23.579 -0.829 14.472 1.00 0.00 O
|
| 440 |
+
ATOM 439 CG1 VAL A 57 24.649 0.504 16.950 1.00 0.00 C
|
| 441 |
+
ATOM 440 CG2 VAL A 57 23.057 0.165 18.863 1.00 0.00 C
|
| 442 |
+
ATOM 441 N CYS A 58 23.621 -2.878 15.348 1.00 0.00 N
|
| 443 |
+
ATOM 442 CA CYS A 58 24.345 -3.506 14.248 1.00 0.00 C
|
| 444 |
+
ATOM 443 C CYS A 58 23.530 -3.454 12.961 1.00 0.00 C
|
| 445 |
+
ATOM 444 CB CYS A 58 24.686 -4.955 14.589 1.00 0.00 C
|
| 446 |
+
ATOM 445 O CYS A 58 24.047 -3.753 11.882 1.00 0.00 O
|
| 447 |
+
ATOM 446 SG CYS A 58 26.014 -5.125 15.800 1.00 0.00 S
|
| 448 |
+
ATOM 447 N SER A 59 22.319 -3.071 12.976 1.00 0.00 N
|
| 449 |
+
ATOM 448 CA SER A 59 21.487 -2.940 11.784 1.00 0.00 C
|
| 450 |
+
ATOM 449 C SER A 59 21.065 -1.492 11.561 1.00 0.00 C
|
| 451 |
+
ATOM 450 CB SER A 59 20.248 -3.830 11.894 1.00 0.00 C
|
| 452 |
+
ATOM 451 O SER A 59 20.087 -1.226 10.858 1.00 0.00 O
|
| 453 |
+
ATOM 452 OG SER A 59 20.617 -5.180 12.118 1.00 0.00 O
|
| 454 |
+
ATOM 453 N GLN A 60 21.755 -0.574 12.187 1.00 0.00 N
|
| 455 |
+
ATOM 454 CA GLN A 60 21.372 0.828 12.068 1.00 0.00 C
|
| 456 |
+
ATOM 455 C GLN A 60 22.288 1.568 11.096 1.00 0.00 C
|
| 457 |
+
ATOM 456 CB GLN A 60 21.397 1.511 13.436 1.00 0.00 C
|
| 458 |
+
ATOM 457 O GLN A 60 22.495 1.120 9.967 1.00 0.00 O
|
| 459 |
+
ATOM 458 CG GLN A 60 20.378 0.952 14.420 1.00 0.00 C
|
| 460 |
+
ATOM 459 CD GLN A 60 20.355 1.711 15.735 1.00 0.00 C
|
| 461 |
+
ATOM 460 NE2 GLN A 60 19.771 1.100 16.760 1.00 0.00 N
|
| 462 |
+
ATOM 461 OE1 GLN A 60 20.858 2.835 15.827 1.00 0.00 O
|
| 463 |
+
ATOM 462 N LYS A 61 22.813 2.782 11.509 1.00 0.00 N
|
| 464 |
+
ATOM 463 CA LYS A 61 23.591 3.607 10.589 1.00 0.00 C
|
| 465 |
+
ATOM 464 C LYS A 61 25.021 3.088 10.462 1.00 0.00 C
|
| 466 |
+
ATOM 465 CB LYS A 61 23.602 5.065 11.052 1.00 0.00 C
|
| 467 |
+
ATOM 466 O LYS A 61 25.795 3.146 11.419 1.00 0.00 O
|
| 468 |
+
ATOM 467 CG LYS A 61 24.325 6.009 10.103 1.00 0.00 C
|
| 469 |
+
ATOM 468 CD LYS A 61 24.354 7.432 10.646 1.00 0.00 C
|
| 470 |
+
ATOM 469 CE LYS A 61 25.169 8.356 9.752 1.00 0.00 C
|
| 471 |
+
ATOM 470 NZ LYS A 61 25.257 9.737 10.315 1.00 0.00 N
|
| 472 |
+
ATOM 471 N ASN A 62 25.341 2.609 9.265 1.00 0.00 N
|
| 473 |
+
ATOM 472 CA ASN A 62 26.706 2.171 8.991 1.00 0.00 C
|
| 474 |
+
ATOM 473 C ASN A 62 27.664 3.355 8.888 1.00 0.00 C
|
| 475 |
+
ATOM 474 CB ASN A 62 26.754 1.335 7.711 1.00 0.00 C
|
| 476 |
+
ATOM 475 O ASN A 62 27.397 4.312 8.159 1.00 0.00 O
|
| 477 |
+
ATOM 476 CG ASN A 62 28.124 0.739 7.455 1.00 0.00 C
|
| 478 |
+
ATOM 477 ND2 ASN A 62 28.556 -0.155 8.337 1.00 0.00 N
|
| 479 |
+
ATOM 478 OD1 ASN A 62 28.788 1.077 6.471 1.00 0.00 O
|
| 480 |
+
ATOM 479 N VAL A 63 28.835 3.317 9.626 1.00 0.00 N
|
| 481 |
+
ATOM 480 CA VAL A 63 29.841 4.373 9.649 1.00 0.00 C
|
| 482 |
+
ATOM 481 C VAL A 63 31.237 3.757 9.605 1.00 0.00 C
|
| 483 |
+
ATOM 482 CB VAL A 63 29.694 5.272 10.897 1.00 0.00 C
|
| 484 |
+
ATOM 483 O VAL A 63 31.407 2.565 9.877 1.00 0.00 O
|
| 485 |
+
ATOM 484 CG1 VAL A 63 28.332 5.962 10.907 1.00 0.00 C
|
| 486 |
+
ATOM 485 CG2 VAL A 63 29.891 4.451 12.170 1.00 0.00 C
|
| 487 |
+
ATOM 486 N ALA A 64 32.225 4.568 9.241 1.00 0.00 N
|
| 488 |
+
ATOM 487 CA ALA A 64 33.610 4.108 9.266 1.00 0.00 C
|
| 489 |
+
ATOM 488 C ALA A 64 34.133 4.017 10.697 1.00 0.00 C
|
| 490 |
+
ATOM 489 CB ALA A 64 34.495 5.037 8.438 1.00 0.00 C
|
| 491 |
+
ATOM 490 O ALA A 64 33.917 4.926 11.502 1.00 0.00 O
|
| 492 |
+
ATOM 491 N CYS A 65 34.765 2.851 10.986 1.00 0.00 N
|
| 493 |
+
ATOM 492 CA CYS A 65 35.408 2.707 12.287 1.00 0.00 C
|
| 494 |
+
ATOM 493 C CYS A 65 36.600 3.646 12.414 1.00 0.00 C
|
| 495 |
+
ATOM 494 CB CYS A 65 35.859 1.263 12.506 1.00 0.00 C
|
| 496 |
+
ATOM 495 O CYS A 65 37.128 4.126 11.408 1.00 0.00 O
|
| 497 |
+
ATOM 496 SG CYS A 65 34.563 0.042 12.206 1.00 0.00 S
|
| 498 |
+
ATOM 497 N LYS A 66 37.080 3.950 13.692 1.00 0.00 N
|
| 499 |
+
ATOM 498 CA LYS A 66 38.246 4.794 13.933 1.00 0.00 C
|
| 500 |
+
ATOM 499 C LYS A 66 39.476 4.251 13.211 1.00 0.00 C
|
| 501 |
+
ATOM 500 CB LYS A 66 38.527 4.907 15.432 1.00 0.00 C
|
| 502 |
+
ATOM 501 O LYS A 66 40.334 5.020 12.771 1.00 0.00 O
|
| 503 |
+
ATOM 502 CG LYS A 66 37.579 5.842 16.170 1.00 0.00 C
|
| 504 |
+
ATOM 503 CD LYS A 66 37.963 5.983 17.637 1.00 0.00 C
|
| 505 |
+
ATOM 504 CE LYS A 66 37.027 6.931 18.373 1.00 0.00 C
|
| 506 |
+
ATOM 505 NZ LYS A 66 37.308 6.961 19.840 1.00 0.00 N
|
| 507 |
+
ATOM 506 N ASN A 67 39.554 2.878 13.043 1.00 0.00 N
|
| 508 |
+
ATOM 507 CA ASN A 67 40.711 2.263 12.403 1.00 0.00 C
|
| 509 |
+
ATOM 508 C ASN A 67 40.515 2.130 10.896 1.00 0.00 C
|
| 510 |
+
ATOM 509 CB ASN A 67 41.003 0.894 13.023 1.00 0.00 C
|
| 511 |
+
ATOM 510 O ASN A 67 41.343 1.529 10.209 1.00 0.00 O
|
| 512 |
+
ATOM 511 CG ASN A 67 39.869 -0.091 12.821 1.00 0.00 C
|
| 513 |
+
ATOM 512 ND2 ASN A 67 39.982 -1.260 13.441 1.00 0.00 N
|
| 514 |
+
ATOM 513 OD1 ASN A 67 38.900 0.195 12.112 1.00 0.00 O
|
| 515 |
+
ATOM 514 N GLY A 68 39.321 2.582 10.406 1.00 0.00 N
|
| 516 |
+
ATOM 515 CA GLY A 68 39.087 2.592 8.970 1.00 0.00 C
|
| 517 |
+
ATOM 516 C GLY A 68 38.262 1.412 8.493 1.00 0.00 C
|
| 518 |
+
ATOM 517 O GLY A 68 37.848 1.367 7.333 1.00 0.00 O
|
| 519 |
+
ATOM 518 N GLN A 69 37.993 0.429 9.352 1.00 0.00 N
|
| 520 |
+
ATOM 519 CA GLN A 69 37.133 -0.692 8.987 1.00 0.00 C
|
| 521 |
+
ATOM 520 C GLN A 69 35.707 -0.225 8.708 1.00 0.00 C
|
| 522 |
+
ATOM 521 CB GLN A 69 37.133 -1.749 10.092 1.00 0.00 C
|
| 523 |
+
ATOM 522 O GLN A 69 35.305 0.854 9.148 1.00 0.00 O
|
| 524 |
+
ATOM 523 CG GLN A 69 38.490 -2.401 10.321 1.00 0.00 C
|
| 525 |
+
ATOM 524 CD GLN A 69 38.480 -3.387 11.474 1.00 0.00 C
|
| 526 |
+
ATOM 525 NE2 GLN A 69 39.017 -4.580 11.238 1.00 0.00 N
|
| 527 |
+
ATOM 526 OE1 GLN A 69 37.996 -3.080 12.567 1.00 0.00 O
|
| 528 |
+
ATOM 527 N THR A 70 34.963 -1.066 7.988 1.00 0.00 N
|
| 529 |
+
ATOM 528 CA THR A 70 33.656 -0.630 7.511 1.00 0.00 C
|
| 530 |
+
ATOM 529 C THR A 70 32.539 -1.376 8.234 1.00 0.00 C
|
| 531 |
+
ATOM 530 CB THR A 70 33.517 -0.841 5.991 1.00 0.00 C
|
| 532 |
+
ATOM 531 O THR A 70 31.389 -1.368 7.790 1.00 0.00 O
|
| 533 |
+
ATOM 532 CG2 THR A 70 34.538 -0.008 5.224 1.00 0.00 C
|
| 534 |
+
ATOM 533 OG1 THR A 70 33.722 -2.227 5.687 1.00 0.00 O
|
| 535 |
+
ATOM 534 N ASN A 71 32.847 -2.061 9.301 1.00 0.00 N
|
| 536 |
+
ATOM 535 CA ASN A 71 31.824 -2.840 9.991 1.00 0.00 C
|
| 537 |
+
ATOM 536 C ASN A 71 31.362 -2.152 11.272 1.00 0.00 C
|
| 538 |
+
ATOM 537 CB ASN A 71 32.339 -4.248 10.300 1.00 0.00 C
|
| 539 |
+
ATOM 538 O ASN A 71 30.985 -2.817 12.237 1.00 0.00 O
|
| 540 |
+
ATOM 539 CG ASN A 71 33.519 -4.241 11.252 1.00 0.00 C
|
| 541 |
+
ATOM 540 ND2 ASN A 71 33.634 -5.287 12.061 1.00 0.00 N
|
| 542 |
+
ATOM 541 OD1 ASN A 71 34.321 -3.303 11.260 1.00 0.00 O
|
| 543 |
+
ATOM 542 N CYS A 72 31.411 -0.808 11.275 1.00 0.00 N
|
| 544 |
+
ATOM 543 CA CYS A 72 30.946 -0.071 12.445 1.00 0.00 C
|
| 545 |
+
ATOM 544 C CYS A 72 29.573 0.541 12.194 1.00 0.00 C
|
| 546 |
+
ATOM 545 CB CYS A 72 31.943 1.027 12.818 1.00 0.00 C
|
| 547 |
+
ATOM 546 O CYS A 72 29.257 0.927 11.067 1.00 0.00 O
|
| 548 |
+
ATOM 547 SG CYS A 72 33.389 0.421 13.713 1.00 0.00 S
|
| 549 |
+
ATOM 548 N TYR A 73 28.783 0.566 13.237 1.00 0.00 N
|
| 550 |
+
ATOM 549 CA TYR A 73 27.416 1.074 13.183 1.00 0.00 C
|
| 551 |
+
ATOM 550 C TYR A 73 27.145 2.033 14.336 1.00 0.00 C
|
| 552 |
+
ATOM 551 CB TYR A 73 26.411 -0.083 13.217 1.00 0.00 C
|
| 553 |
+
ATOM 552 O TYR A 73 27.575 1.793 15.466 1.00 0.00 O
|
| 554 |
+
ATOM 553 CG TYR A 73 26.575 -1.062 12.081 1.00 0.00 C
|
| 555 |
+
ATOM 554 CD1 TYR A 73 25.771 -0.984 10.947 1.00 0.00 C
|
| 556 |
+
ATOM 555 CD2 TYR A 73 27.533 -2.069 12.140 1.00 0.00 C
|
| 557 |
+
ATOM 556 CE1 TYR A 73 25.916 -1.887 9.898 1.00 0.00 C
|
| 558 |
+
ATOM 557 CE2 TYR A 73 27.687 -2.977 11.098 1.00 0.00 C
|
| 559 |
+
ATOM 558 OH TYR A 73 27.025 -3.773 8.948 1.00 0.00 O
|
| 560 |
+
ATOM 559 CZ TYR A 73 26.876 -2.877 9.983 1.00 0.00 C
|
| 561 |
+
ATOM 560 N GLN A 74 26.455 3.085 14.035 1.00 0.00 N
|
| 562 |
+
ATOM 561 CA GLN A 74 26.071 4.108 15.002 1.00 0.00 C
|
| 563 |
+
ATOM 562 C GLN A 74 24.593 3.996 15.365 1.00 0.00 C
|
| 564 |
+
ATOM 563 CB GLN A 74 26.374 5.504 14.456 1.00 0.00 C
|
| 565 |
+
ATOM 564 O GLN A 74 23.744 3.834 14.487 1.00 0.00 O
|
| 566 |
+
ATOM 565 CG GLN A 74 25.955 6.633 15.387 1.00 0.00 C
|
| 567 |
+
ATOM 566 CD GLN A 74 26.256 8.006 14.818 1.00 0.00 C
|
| 568 |
+
ATOM 567 NE2 GLN A 74 25.550 9.020 15.307 1.00 0.00 N
|
| 569 |
+
ATOM 568 OE1 GLN A 74 27.118 8.156 13.945 1.00 0.00 O
|
| 570 |
+
ATOM 569 N SER A 75 24.301 4.087 16.628 1.00 0.00 N
|
| 571 |
+
ATOM 570 CA SER A 75 22.915 4.035 17.085 1.00 0.00 C
|
| 572 |
+
ATOM 571 C SER A 75 22.121 5.233 16.576 1.00 0.00 C
|
| 573 |
+
ATOM 572 CB SER A 75 22.855 3.985 18.612 1.00 0.00 C
|
| 574 |
+
ATOM 573 O SER A 75 22.662 6.333 16.444 1.00 0.00 O
|
| 575 |
+
ATOM 574 OG SER A 75 23.394 5.169 19.175 1.00 0.00 O
|
| 576 |
+
ATOM 575 N TYR A 76 20.842 5.002 16.254 1.00 0.00 N
|
| 577 |
+
ATOM 576 CA TYR A 76 19.951 6.070 15.816 1.00 0.00 C
|
| 578 |
+
ATOM 577 C TYR A 76 19.606 7.001 16.972 1.00 0.00 C
|
| 579 |
+
ATOM 578 CB TYR A 76 18.669 5.489 15.214 1.00 0.00 C
|
| 580 |
+
ATOM 579 O TYR A 76 19.484 8.214 16.786 1.00 0.00 O
|
| 581 |
+
ATOM 580 CG TYR A 76 18.850 4.935 13.820 1.00 0.00 C
|
| 582 |
+
ATOM 581 CD1 TYR A 76 19.736 5.529 12.924 1.00 0.00 C
|
| 583 |
+
ATOM 582 CD2 TYR A 76 18.135 3.821 13.398 1.00 0.00 C
|
| 584 |
+
ATOM 583 CE1 TYR A 76 19.904 5.024 11.638 1.00 0.00 C
|
| 585 |
+
ATOM 584 CE2 TYR A 76 18.295 3.307 12.114 1.00 0.00 C
|
| 586 |
+
ATOM 585 OH TYR A 76 19.343 3.411 9.972 1.00 0.00 O
|
| 587 |
+
ATOM 586 CZ TYR A 76 19.181 3.915 11.244 1.00 0.00 C
|
| 588 |
+
ATOM 587 N SER A 77 19.449 6.485 18.143 1.00 0.00 N
|
| 589 |
+
ATOM 588 CA SER A 77 19.112 7.255 19.336 1.00 0.00 C
|
| 590 |
+
ATOM 589 C SER A 77 20.254 7.238 20.346 1.00 0.00 C
|
| 591 |
+
ATOM 590 CB SER A 77 17.839 6.710 19.984 1.00 0.00 C
|
| 592 |
+
ATOM 591 O SER A 77 21.119 6.361 20.299 1.00 0.00 O
|
| 593 |
+
ATOM 592 OG SER A 77 18.014 5.361 20.380 1.00 0.00 O
|
| 594 |
+
ATOM 593 N THR A 78 20.252 8.260 21.176 1.00 0.00 N
|
| 595 |
+
ATOM 594 CA THR A 78 21.242 8.270 22.246 1.00 0.00 C
|
| 596 |
+
ATOM 595 C THR A 78 20.954 7.167 23.260 1.00 0.00 C
|
| 597 |
+
ATOM 596 CB THR A 78 21.277 9.633 22.962 1.00 0.00 C
|
| 598 |
+
ATOM 597 O THR A 78 19.806 6.744 23.415 1.00 0.00 O
|
| 599 |
+
ATOM 598 CG2 THR A 78 21.629 10.756 21.991 1.00 0.00 C
|
| 600 |
+
ATOM 599 OG1 THR A 78 19.991 9.898 23.536 1.00 0.00 O
|
| 601 |
+
ATOM 600 N MET A 79 21.978 6.712 23.768 1.00 0.00 N
|
| 602 |
+
ATOM 601 CA MET A 79 21.914 5.694 24.813 1.00 0.00 C
|
| 603 |
+
ATOM 602 C MET A 79 22.583 6.184 26.092 1.00 0.00 C
|
| 604 |
+
ATOM 603 CB MET A 79 22.573 4.397 24.341 1.00 0.00 C
|
| 605 |
+
ATOM 604 O MET A 79 23.511 6.994 26.042 1.00 0.00 O
|
| 606 |
+
ATOM 605 CG MET A 79 21.904 3.775 23.125 1.00 0.00 C
|
| 607 |
+
ATOM 606 SD MET A 79 22.636 2.156 22.672 1.00 0.00 S
|
| 608 |
+
ATOM 607 CE MET A 79 21.504 1.653 21.346 1.00 0.00 C
|
| 609 |
+
ATOM 608 N SER A 80 22.013 5.755 27.240 1.00 0.00 N
|
| 610 |
+
ATOM 609 CA SER A 80 22.609 6.089 28.529 1.00 0.00 C
|
| 611 |
+
ATOM 610 C SER A 80 23.926 5.348 28.737 1.00 0.00 C
|
| 612 |
+
ATOM 611 CB SER A 80 21.644 5.760 29.668 1.00 0.00 C
|
| 613 |
+
ATOM 612 O SER A 80 23.972 4.119 28.657 1.00 0.00 O
|
| 614 |
+
ATOM 613 OG SER A 80 22.186 6.154 30.917 1.00 0.00 O
|
| 615 |
+
ATOM 614 N ILE A 81 25.073 6.141 28.958 1.00 0.00 N
|
| 616 |
+
ATOM 615 CA ILE A 81 26.385 5.524 29.111 1.00 0.00 C
|
| 617 |
+
ATOM 616 C ILE A 81 27.123 6.165 30.284 1.00 0.00 C
|
| 618 |
+
ATOM 617 CB ILE A 81 27.223 5.648 27.818 1.00 0.00 C
|
| 619 |
+
ATOM 618 O ILE A 81 26.764 7.258 30.729 1.00 0.00 O
|
| 620 |
+
ATOM 619 CG1 ILE A 81 27.479 7.123 27.488 1.00 0.00 C
|
| 621 |
+
ATOM 620 CG2 ILE A 81 26.527 4.938 26.653 1.00 0.00 C
|
| 622 |
+
ATOM 621 CD1 ILE A 81 28.610 7.347 26.494 1.00 0.00 C
|
| 623 |
+
ATOM 622 N THR A 82 28.072 5.471 30.803 1.00 0.00 N
|
| 624 |
+
ATOM 623 CA THR A 82 29.064 6.006 31.730 1.00 0.00 C
|
| 625 |
+
ATOM 624 C THR A 82 30.473 5.845 31.165 1.00 0.00 C
|
| 626 |
+
ATOM 625 CB THR A 82 28.975 5.314 33.102 1.00 0.00 C
|
| 627 |
+
ATOM 626 O THR A 82 30.896 4.732 30.846 1.00 0.00 O
|
| 628 |
+
ATOM 627 CG2 THR A 82 30.034 5.853 34.059 1.00 0.00 C
|
| 629 |
+
ATOM 628 OG1 THR A 82 27.677 5.545 33.664 1.00 0.00 O
|
| 630 |
+
ATOM 629 N ASP A 83 31.176 6.942 30.975 1.00 0.00 N
|
| 631 |
+
ATOM 630 CA ASP A 83 32.584 6.945 30.586 1.00 0.00 C
|
| 632 |
+
ATOM 631 C ASP A 83 33.492 6.920 31.813 1.00 0.00 C
|
| 633 |
+
ATOM 632 CB ASP A 83 32.899 8.169 29.723 1.00 0.00 C
|
| 634 |
+
ATOM 633 O ASP A 83 33.334 7.733 32.726 1.00 0.00 O
|
| 635 |
+
ATOM 634 CG ASP A 83 32.333 8.066 28.318 1.00 0.00 C
|
| 636 |
+
ATOM 635 OD1 ASP A 83 32.395 6.974 27.714 1.00 0.00 O
|
| 637 |
+
ATOM 636 OD2 ASP A 83 31.822 9.088 27.809 1.00 0.00 O
|
| 638 |
+
ATOM 637 N CYS A 84 34.275 5.954 31.848 1.00 0.00 N
|
| 639 |
+
ATOM 638 CA CYS A 84 35.298 5.811 32.878 1.00 0.00 C
|
| 640 |
+
ATOM 639 C CYS A 84 36.673 6.181 32.335 1.00 0.00 C
|
| 641 |
+
ATOM 640 CB CYS A 84 35.320 4.380 33.415 1.00 0.00 C
|
| 642 |
+
ATOM 641 O CYS A 84 37.184 5.522 31.426 1.00 0.00 O
|
| 643 |
+
ATOM 642 SG CYS A 84 33.764 3.864 34.173 1.00 0.00 S
|
| 644 |
+
ATOM 643 N ARG A 85 37.265 7.190 32.880 1.00 0.00 N
|
| 645 |
+
ATOM 644 CA ARG A 85 38.586 7.637 32.448 1.00 0.00 C
|
| 646 |
+
ATOM 645 C ARG A 85 39.567 7.653 33.615 1.00 0.00 C
|
| 647 |
+
ATOM 646 CB ARG A 85 38.502 9.027 31.814 1.00 0.00 C
|
| 648 |
+
ATOM 647 O ARG A 85 39.279 8.225 34.668 1.00 0.00 O
|
| 649 |
+
ATOM 648 CG ARG A 85 39.825 9.530 31.258 1.00 0.00 C
|
| 650 |
+
ATOM 649 CD ARG A 85 39.663 10.860 30.536 1.00 0.00 C
|
| 651 |
+
ATOM 650 NE ARG A 85 38.903 10.712 29.298 1.00 0.00 N
|
| 652 |
+
ATOM 651 NH1 ARG A 85 40.760 10.489 27.942 1.00 0.00 N
|
| 653 |
+
ATOM 652 NH2 ARG A 85 38.657 10.415 27.034 1.00 0.00 N
|
| 654 |
+
ATOM 653 CZ ARG A 85 39.442 10.540 28.093 1.00 0.00 C
|
| 655 |
+
ATOM 654 N GLU A 86 40.662 7.040 33.373 1.00 0.00 N
|
| 656 |
+
ATOM 655 CA GLU A 86 41.715 7.006 34.385 1.00 0.00 C
|
| 657 |
+
ATOM 656 C GLU A 86 42.158 8.416 34.766 1.00 0.00 C
|
| 658 |
+
ATOM 657 CB GLU A 86 42.914 6.195 33.886 1.00 0.00 C
|
| 659 |
+
ATOM 658 O GLU A 86 42.342 9.271 33.897 1.00 0.00 O
|
| 660 |
+
ATOM 659 CG GLU A 86 43.975 5.950 34.949 1.00 0.00 C
|
| 661 |
+
ATOM 660 CD GLU A 86 45.179 5.181 34.429 1.00 0.00 C
|
| 662 |
+
ATOM 661 OE1 GLU A 86 45.355 5.093 33.193 1.00 0.00 O
|
| 663 |
+
ATOM 662 OE2 GLU A 86 45.951 4.660 35.265 1.00 0.00 O
|
| 664 |
+
ATOM 663 N THR A 87 42.272 8.650 36.091 1.00 0.00 N
|
| 665 |
+
ATOM 664 CA THR A 87 42.658 9.961 36.598 1.00 0.00 C
|
| 666 |
+
ATOM 665 C THR A 87 44.175 10.068 36.721 1.00 0.00 C
|
| 667 |
+
ATOM 666 CB THR A 87 42.008 10.246 37.965 1.00 0.00 C
|
| 668 |
+
ATOM 667 O THR A 87 44.881 9.059 36.666 1.00 0.00 O
|
| 669 |
+
ATOM 668 CG2 THR A 87 40.500 10.024 37.913 1.00 0.00 C
|
| 670 |
+
ATOM 669 OG1 THR A 87 42.574 9.371 38.948 1.00 0.00 O
|
| 671 |
+
ATOM 670 N GLY A 88 44.666 11.370 36.877 1.00 0.00 N
|
| 672 |
+
ATOM 671 CA GLY A 88 46.085 11.624 37.064 1.00 0.00 C
|
| 673 |
+
ATOM 672 C GLY A 88 46.642 10.994 38.326 1.00 0.00 C
|
| 674 |
+
ATOM 673 O GLY A 88 47.851 10.777 38.436 1.00 0.00 O
|
| 675 |
+
ATOM 674 N SER A 89 45.805 10.674 39.256 1.00 0.00 N
|
| 676 |
+
ATOM 675 CA SER A 89 46.237 10.112 40.532 1.00 0.00 C
|
| 677 |
+
ATOM 676 C SER A 89 46.261 8.588 40.484 1.00 0.00 C
|
| 678 |
+
ATOM 677 CB SER A 89 45.319 10.580 41.662 1.00 0.00 C
|
| 679 |
+
ATOM 678 O SER A 89 46.612 7.936 41.471 1.00 0.00 O
|
| 680 |
+
ATOM 679 OG SER A 89 43.991 10.134 41.450 1.00 0.00 O
|
| 681 |
+
ATOM 680 N SER A 90 45.991 7.999 39.418 1.00 0.00 N
|
| 682 |
+
ATOM 681 CA SER A 90 45.918 6.549 39.275 1.00 0.00 C
|
| 683 |
+
ATOM 682 C SER A 90 47.309 5.923 39.280 1.00 0.00 C
|
| 684 |
+
ATOM 683 CB SER A 90 45.186 6.172 37.988 1.00 0.00 C
|
| 685 |
+
ATOM 684 O SER A 90 48.208 6.388 38.577 1.00 0.00 O
|
| 686 |
+
ATOM 685 OG SER A 90 45.011 4.768 37.901 1.00 0.00 O
|
| 687 |
+
ATOM 686 N LYS A 91 47.454 4.862 40.036 1.00 0.00 N
|
| 688 |
+
ATOM 687 CA LYS A 91 48.647 4.024 40.109 1.00 0.00 C
|
| 689 |
+
ATOM 688 C LYS A 91 48.276 2.552 40.267 1.00 0.00 C
|
| 690 |
+
ATOM 689 CB LYS A 91 49.543 4.466 41.267 1.00 0.00 C
|
| 691 |
+
ATOM 690 O LYS A 91 47.606 2.175 41.230 1.00 0.00 O
|
| 692 |
+
ATOM 691 CG LYS A 91 50.934 3.849 41.246 1.00 0.00 C
|
| 693 |
+
ATOM 692 CD LYS A 91 51.820 4.427 42.341 1.00 0.00 C
|
| 694 |
+
ATOM 693 CE LYS A 91 53.206 3.797 42.331 1.00 0.00 C
|
| 695 |
+
ATOM 694 NZ LYS A 91 54.100 4.410 43.359 1.00 0.00 N
|
| 696 |
+
ATOM 695 N TYR A 92 48.815 1.754 39.366 1.00 0.00 N
|
| 697 |
+
ATOM 696 CA TYR A 92 48.544 0.326 39.491 1.00 0.00 C
|
| 698 |
+
ATOM 697 C TYR A 92 49.169 -0.238 40.761 1.00 0.00 C
|
| 699 |
+
ATOM 698 CB TYR A 92 49.073 -0.430 38.268 1.00 0.00 C
|
| 700 |
+
ATOM 699 O TYR A 92 50.330 0.043 41.067 1.00 0.00 O
|
| 701 |
+
ATOM 700 CG TYR A 92 48.820 -1.918 38.319 1.00 0.00 C
|
| 702 |
+
ATOM 701 CD1 TYR A 92 47.586 -2.448 37.949 1.00 0.00 C
|
| 703 |
+
ATOM 702 CD2 TYR A 92 49.814 -2.796 38.738 1.00 0.00 C
|
| 704 |
+
ATOM 703 CE1 TYR A 92 47.348 -3.817 37.996 1.00 0.00 C
|
| 705 |
+
ATOM 704 CE2 TYR A 92 49.588 -4.167 38.788 1.00 0.00 C
|
| 706 |
+
ATOM 705 OH TYR A 92 48.123 -6.024 38.464 1.00 0.00 O
|
| 707 |
+
ATOM 706 CZ TYR A 92 48.354 -4.668 38.416 1.00 0.00 C
|
| 708 |
+
ATOM 707 N PRO A 93 48.428 -1.023 41.446 1.00 0.00 N
|
| 709 |
+
ATOM 708 CA PRO A 93 47.131 -1.639 41.157 1.00 0.00 C
|
| 710 |
+
ATOM 709 C PRO A 93 45.959 -0.830 41.707 1.00 0.00 C
|
| 711 |
+
ATOM 710 CB PRO A 93 47.227 -3.002 41.848 1.00 0.00 C
|
| 712 |
+
ATOM 711 O PRO A 93 44.820 -1.304 41.699 1.00 0.00 O
|
| 713 |
+
ATOM 712 CG PRO A 93 48.081 -2.762 43.050 1.00 0.00 C
|
| 714 |
+
ATOM 713 CD PRO A 93 49.127 -1.745 42.698 1.00 0.00 C
|
| 715 |
+
ATOM 714 N ASN A 94 46.228 0.373 42.277 1.00 0.00 N
|
| 716 |
+
ATOM 715 CA ASN A 94 45.171 1.252 42.767 1.00 0.00 C
|
| 717 |
+
ATOM 716 C ASN A 94 44.672 2.192 41.673 1.00 0.00 C
|
| 718 |
+
ATOM 717 CB ASN A 94 45.657 2.053 43.976 1.00 0.00 C
|
| 719 |
+
ATOM 718 O ASN A 94 44.996 3.381 41.676 1.00 0.00 O
|
| 720 |
+
ATOM 719 CG ASN A 94 46.093 1.168 45.127 1.00 0.00 C
|
| 721 |
+
ATOM 720 ND2 ASN A 94 47.201 1.527 45.765 1.00 0.00 N
|
| 722 |
+
ATOM 721 OD1 ASN A 94 45.439 0.170 45.440 1.00 0.00 O
|
| 723 |
+
ATOM 722 N CYS A 95 43.915 1.661 40.797 1.00 0.00 N
|
| 724 |
+
ATOM 723 CA CYS A 95 43.409 2.416 39.657 1.00 0.00 C
|
| 725 |
+
ATOM 724 C CYS A 95 42.269 3.337 40.075 1.00 0.00 C
|
| 726 |
+
ATOM 725 CB CYS A 95 42.933 1.470 38.554 1.00 0.00 C
|
| 727 |
+
ATOM 726 O CYS A 95 41.380 2.930 40.826 1.00 0.00 O
|
| 728 |
+
ATOM 727 SG CYS A 95 44.189 0.287 38.019 1.00 0.00 S
|
| 729 |
+
ATOM 728 N ALA A 96 42.310 4.597 39.730 1.00 0.00 N
|
| 730 |
+
ATOM 729 CA ALA A 96 41.300 5.609 40.027 1.00 0.00 C
|
| 731 |
+
ATOM 730 C ALA A 96 40.706 6.184 38.745 1.00 0.00 C
|
| 732 |
+
ATOM 731 CB ALA A 96 41.900 6.725 40.879 1.00 0.00 C
|
| 733 |
+
ATOM 732 O ALA A 96 41.439 6.531 37.816 1.00 0.00 O
|
| 734 |
+
ATOM 733 N TYR A 97 39.382 6.290 38.749 1.00 0.00 N
|
| 735 |
+
ATOM 734 CA TYR A 97 38.709 6.694 37.519 1.00 0.00 C
|
| 736 |
+
ATOM 735 C TYR A 97 37.701 7.804 37.788 1.00 0.00 C
|
| 737 |
+
ATOM 736 CB TYR A 97 38.007 5.497 36.870 1.00 0.00 C
|
| 738 |
+
ATOM 737 O TYR A 97 37.025 7.802 38.820 1.00 0.00 O
|
| 739 |
+
ATOM 738 CG TYR A 97 38.953 4.414 36.414 1.00 0.00 C
|
| 740 |
+
ATOM 739 CD1 TYR A 97 39.479 4.420 35.124 1.00 0.00 C
|
| 741 |
+
ATOM 740 CD2 TYR A 97 39.321 3.381 37.269 1.00 0.00 C
|
| 742 |
+
ATOM 741 CE1 TYR A 97 40.350 3.423 34.697 1.00 0.00 C
|
| 743 |
+
ATOM 742 CE2 TYR A 97 40.191 2.378 36.853 1.00 0.00 C
|
| 744 |
+
ATOM 743 OH TYR A 97 41.561 1.417 35.151 1.00 0.00 O
|
| 745 |
+
ATOM 744 CZ TYR A 97 40.700 2.408 35.568 1.00 0.00 C
|
| 746 |
+
ATOM 745 N LYS A 98 37.638 8.718 36.868 1.00 0.00 N
|
| 747 |
+
ATOM 746 CA LYS A 98 36.546 9.684 36.798 1.00 0.00 C
|
| 748 |
+
ATOM 747 C LYS A 98 35.306 9.065 36.158 1.00 0.00 C
|
| 749 |
+
ATOM 748 CB LYS A 98 36.975 10.925 36.014 1.00 0.00 C
|
| 750 |
+
ATOM 749 O LYS A 98 35.400 8.399 35.125 1.00 0.00 O
|
| 751 |
+
ATOM 750 CG LYS A 98 35.936 12.036 35.994 1.00 0.00 C
|
| 752 |
+
ATOM 751 CD LYS A 98 36.431 13.250 35.221 1.00 0.00 C
|
| 753 |
+
ATOM 752 CE LYS A 98 35.382 14.354 35.179 1.00 0.00 C
|
| 754 |
+
ATOM 753 NZ LYS A 98 35.846 15.530 34.383 1.00 0.00 N
|
| 755 |
+
ATOM 754 N THR A 99 34.175 9.280 36.787 1.00 0.00 N
|
| 756 |
+
ATOM 755 CA THR A 99 32.882 8.790 36.324 1.00 0.00 C
|
| 757 |
+
ATOM 756 C THR A 99 32.095 9.904 35.640 1.00 0.00 C
|
| 758 |
+
ATOM 757 CB THR A 99 32.054 8.215 37.488 1.00 0.00 C
|
| 759 |
+
ATOM 758 O THR A 99 31.821 10.942 36.247 1.00 0.00 O
|
| 760 |
+
ATOM 759 CG2 THR A 99 30.698 7.713 37.003 1.00 0.00 C
|
| 761 |
+
ATOM 760 OG1 THR A 99 32.770 7.125 38.083 1.00 0.00 O
|
| 762 |
+
ATOM 761 N THR A 100 31.833 9.709 34.379 1.00 0.00 N
|
| 763 |
+
ATOM 762 CA THR A 100 31.051 10.686 33.630 1.00 0.00 C
|
| 764 |
+
ATOM 763 C THR A 100 29.842 10.024 32.975 1.00 0.00 C
|
| 765 |
+
ATOM 764 CB THR A 100 31.906 11.380 32.553 1.00 0.00 C
|
| 766 |
+
ATOM 765 O THR A 100 29.994 9.174 32.095 1.00 0.00 O
|
| 767 |
+
ATOM 766 CG2 THR A 100 31.114 12.472 31.841 1.00 0.00 C
|
| 768 |
+
ATOM 767 OG1 THR A 100 33.058 11.966 33.171 1.00 0.00 O
|
| 769 |
+
ATOM 768 N GLN A 101 28.721 10.413 33.356 1.00 0.00 N
|
| 770 |
+
ATOM 769 CA GLN A 101 27.485 9.928 32.749 1.00 0.00 C
|
| 771 |
+
ATOM 770 C GLN A 101 27.030 10.846 31.618 1.00 0.00 C
|
| 772 |
+
ATOM 771 CB GLN A 101 26.382 9.806 33.802 1.00 0.00 C
|
| 773 |
+
ATOM 772 O GLN A 101 27.171 12.067 31.708 1.00 0.00 O
|
| 774 |
+
ATOM 773 CG GLN A 101 26.663 8.756 34.869 1.00 0.00 C
|
| 775 |
+
ATOM 774 CD GLN A 101 25.567 8.673 35.915 1.00 0.00 C
|
| 776 |
+
ATOM 775 NE2 GLN A 101 25.610 7.631 36.737 1.00 0.00 N
|
| 777 |
+
ATOM 776 OE1 GLN A 101 24.690 9.539 35.982 1.00 0.00 O
|
| 778 |
+
ATOM 777 N ALA A 102 26.468 10.187 30.620 1.00 0.00 N
|
| 779 |
+
ATOM 778 CA ALA A 102 25.981 10.969 29.487 1.00 0.00 C
|
| 780 |
+
ATOM 779 C ALA A 102 25.010 10.156 28.636 1.00 0.00 C
|
| 781 |
+
ATOM 780 CB ALA A 102 27.150 11.458 28.636 1.00 0.00 C
|
| 782 |
+
ATOM 781 O ALA A 102 24.950 8.929 28.751 1.00 0.00 O
|
| 783 |
+
ATOM 782 N ASN A 103 24.225 10.864 27.899 1.00 0.00 N
|
| 784 |
+
ATOM 783 CA ASN A 103 23.446 10.289 26.808 1.00 0.00 C
|
| 785 |
+
ATOM 784 C ASN A 103 24.068 10.601 25.450 1.00 0.00 C
|
| 786 |
+
ATOM 785 CB ASN A 103 22.001 10.788 26.858 1.00 0.00 C
|
| 787 |
+
ATOM 786 O ASN A 103 24.094 11.758 25.026 1.00 0.00 O
|
| 788 |
+
ATOM 787 CG ASN A 103 21.248 10.276 28.070 1.00 0.00 C
|
| 789 |
+
ATOM 788 ND2 ASN A 103 20.449 11.143 28.681 1.00 0.00 N
|
| 790 |
+
ATOM 789 OD1 ASN A 103 21.383 9.112 28.454 1.00 0.00 O
|
| 791 |
+
ATOM 790 N LYS A 104 24.601 9.633 24.846 1.00 0.00 N
|
| 792 |
+
ATOM 791 CA LYS A 104 25.307 9.811 23.580 1.00 0.00 C
|
| 793 |
+
ATOM 792 C LYS A 104 24.947 8.708 22.590 1.00 0.00 C
|
| 794 |
+
ATOM 793 CB LYS A 104 26.820 9.837 23.807 1.00 0.00 C
|
| 795 |
+
ATOM 794 O LYS A 104 24.494 7.633 22.988 1.00 0.00 O
|
| 796 |
+
ATOM 795 CG LYS A 104 27.304 11.036 24.610 1.00 0.00 C
|
| 797 |
+
ATOM 796 CD LYS A 104 28.825 11.099 24.656 1.00 0.00 C
|
| 798 |
+
ATOM 797 CE LYS A 104 29.312 12.363 25.355 1.00 0.00 C
|
| 799 |
+
ATOM 798 NZ LYS A 104 30.801 12.470 25.329 1.00 0.00 N
|
| 800 |
+
ATOM 799 N HIS A 105 25.144 8.954 21.329 1.00 0.00 N
|
| 801 |
+
ATOM 800 CA HIS A 105 25.151 7.871 20.353 1.00 0.00 C
|
| 802 |
+
ATOM 801 C HIS A 105 26.408 7.016 20.486 1.00 0.00 C
|
| 803 |
+
ATOM 802 CB HIS A 105 25.044 8.428 18.933 1.00 0.00 C
|
| 804 |
+
ATOM 803 O HIS A 105 27.488 7.535 20.780 1.00 0.00 O
|
| 805 |
+
ATOM 804 CG HIS A 105 23.799 9.220 18.691 1.00 0.00 C
|
| 806 |
+
ATOM 805 CD2 HIS A 105 23.569 10.553 18.744 1.00 0.00 C
|
| 807 |
+
ATOM 806 ND1 HIS A 105 22.598 8.635 18.351 1.00 0.00 N
|
| 808 |
+
ATOM 807 CE1 HIS A 105 21.682 9.576 18.205 1.00 0.00 C
|
| 809 |
+
ATOM 808 NE2 HIS A 105 22.245 10.750 18.438 1.00 0.00 N
|
| 810 |
+
ATOM 809 N ILE A 106 26.257 5.774 20.292 1.00 0.00 N
|
| 811 |
+
ATOM 810 CA ILE A 106 27.420 4.898 20.370 1.00 0.00 C
|
| 812 |
+
ATOM 811 C ILE A 106 27.723 4.317 18.990 1.00 0.00 C
|
| 813 |
+
ATOM 812 CB ILE A 106 27.205 3.761 21.394 1.00 0.00 C
|
| 814 |
+
ATOM 813 O ILE A 106 26.829 4.200 18.149 1.00 0.00 O
|
| 815 |
+
ATOM 814 CG1 ILE A 106 26.045 2.860 20.955 1.00 0.00 C
|
| 816 |
+
ATOM 815 CG2 ILE A 106 26.955 4.334 22.792 1.00 0.00 C
|
| 817 |
+
ATOM 816 CD1 ILE A 106 25.965 1.541 21.711 1.00 0.00 C
|
| 818 |
+
ATOM 817 N ILE A 107 28.941 4.077 18.777 1.00 0.00 N
|
| 819 |
+
ATOM 818 CA ILE A 107 29.434 3.373 17.598 1.00 0.00 C
|
| 820 |
+
ATOM 819 C ILE A 107 30.079 2.054 18.017 1.00 0.00 C
|
| 821 |
+
ATOM 820 CB ILE A 107 30.442 4.235 16.806 1.00 0.00 C
|
| 822 |
+
ATOM 821 O ILE A 107 30.985 2.036 18.854 1.00 0.00 O
|
| 823 |
+
ATOM 822 CG1 ILE A 107 29.774 5.527 16.320 1.00 0.00 C
|
| 824 |
+
ATOM 823 CG2 ILE A 107 31.022 3.443 15.630 1.00 0.00 C
|
| 825 |
+
ATOM 824 CD1 ILE A 107 30.732 6.507 15.656 1.00 0.00 C
|
| 826 |
+
ATOM 825 N VAL A 108 29.632 0.917 17.467 1.00 0.00 N
|
| 827 |
+
ATOM 826 CA VAL A 108 30.168 -0.405 17.775 1.00 0.00 C
|
| 828 |
+
ATOM 827 C VAL A 108 30.563 -1.116 16.483 1.00 0.00 C
|
| 829 |
+
ATOM 828 CB VAL A 108 29.151 -1.260 18.564 1.00 0.00 C
|
| 830 |
+
ATOM 829 O VAL A 108 29.978 -0.867 15.427 1.00 0.00 O
|
| 831 |
+
ATOM 830 CG1 VAL A 108 28.858 -0.631 19.925 1.00 0.00 C
|
| 832 |
+
ATOM 831 CG2 VAL A 108 27.862 -1.430 17.762 1.00 0.00 C
|
| 833 |
+
ATOM 832 N ALA A 109 31.564 -1.966 16.584 1.00 0.00 N
|
| 834 |
+
ATOM 833 CA ALA A 109 31.926 -2.875 15.499 1.00 0.00 C
|
| 835 |
+
ATOM 834 C ALA A 109 31.167 -4.194 15.614 1.00 0.00 C
|
| 836 |
+
ATOM 835 CB ALA A 109 33.431 -3.129 15.497 1.00 0.00 C
|
| 837 |
+
ATOM 836 O ALA A 109 31.072 -4.770 16.700 1.00 0.00 O
|
| 838 |
+
ATOM 837 N CYS A 110 30.583 -4.592 14.565 1.00 0.00 N
|
| 839 |
+
ATOM 838 CA CYS A 110 29.730 -5.775 14.585 1.00 0.00 C
|
| 840 |
+
ATOM 839 C CYS A 110 30.300 -6.872 13.692 1.00 0.00 C
|
| 841 |
+
ATOM 840 CB CYS A 110 28.313 -5.422 14.134 1.00 0.00 C
|
| 842 |
+
ATOM 841 O CYS A 110 30.861 -6.587 12.632 1.00 0.00 O
|
| 843 |
+
ATOM 842 SG CYS A 110 27.523 -4.151 15.145 1.00 0.00 S
|
| 844 |
+
ATOM 843 N GLU A 111 30.245 -8.051 14.174 1.00 0.00 N
|
| 845 |
+
ATOM 844 CA GLU A 111 30.766 -9.185 13.418 1.00 0.00 C
|
| 846 |
+
ATOM 845 C GLU A 111 30.006 -10.466 13.750 1.00 0.00 C
|
| 847 |
+
ATOM 846 CB GLU A 111 32.260 -9.374 13.692 1.00 0.00 C
|
| 848 |
+
ATOM 847 O GLU A 111 29.265 -10.517 14.733 1.00 0.00 O
|
| 849 |
+
ATOM 848 CG GLU A 111 33.118 -8.193 13.263 1.00 0.00 C
|
| 850 |
+
ATOM 849 CD GLU A 111 34.595 -8.381 13.571 1.00 0.00 C
|
| 851 |
+
ATOM 850 OE1 GLU A 111 34.999 -9.506 13.941 1.00 0.00 O
|
| 852 |
+
ATOM 851 OE2 GLU A 111 35.354 -7.394 13.442 1.00 0.00 O
|
| 853 |
+
ATOM 852 N GLY A 112 30.250 -11.483 12.947 1.00 0.00 N
|
| 854 |
+
ATOM 853 CA GLY A 112 29.791 -12.829 13.252 1.00 0.00 C
|
| 855 |
+
ATOM 854 C GLY A 112 28.375 -13.098 12.779 1.00 0.00 C
|
| 856 |
+
ATOM 855 O GLY A 112 27.733 -12.221 12.196 1.00 0.00 O
|
| 857 |
+
ATOM 856 N ASN A 113 27.934 -14.244 12.919 1.00 0.00 N
|
| 858 |
+
ATOM 857 CA ASN A 113 26.579 -14.764 12.771 1.00 0.00 C
|
| 859 |
+
ATOM 858 C ASN A 113 26.074 -15.392 14.067 1.00 0.00 C
|
| 860 |
+
ATOM 859 CB ASN A 113 26.518 -15.782 11.629 1.00 0.00 C
|
| 861 |
+
ATOM 860 O ASN A 113 26.466 -16.507 14.416 1.00 0.00 O
|
| 862 |
+
ATOM 861 CG ASN A 113 25.098 -16.166 11.266 1.00 0.00 C
|
| 863 |
+
ATOM 862 ND2 ASN A 113 24.955 -17.049 10.283 1.00 0.00 N
|
| 864 |
+
ATOM 863 OD1 ASN A 113 24.136 -15.675 11.862 1.00 0.00 O
|
| 865 |
+
ATOM 864 N PRO A 114 25.270 -14.769 14.745 1.00 0.00 N
|
| 866 |
+
ATOM 865 CA PRO A 114 24.536 -13.539 14.441 1.00 0.00 C
|
| 867 |
+
ATOM 866 C PRO A 114 25.434 -12.304 14.429 1.00 0.00 C
|
| 868 |
+
ATOM 867 CB PRO A 114 23.505 -13.455 15.569 1.00 0.00 C
|
| 869 |
+
ATOM 868 O PRO A 114 26.548 -12.340 14.958 1.00 0.00 O
|
| 870 |
+
ATOM 869 CG PRO A 114 24.154 -14.133 16.731 1.00 0.00 C
|
| 871 |
+
ATOM 870 CD PRO A 114 25.024 -15.243 16.212 1.00 0.00 C
|
| 872 |
+
ATOM 871 N TYR A 115 24.992 -11.355 13.746 1.00 0.00 N
|
| 873 |
+
ATOM 872 CA TYR A 115 25.672 -10.075 13.595 1.00 0.00 C
|
| 874 |
+
ATOM 873 C TYR A 115 25.510 -9.220 14.846 1.00 0.00 C
|
| 875 |
+
ATOM 874 CB TYR A 115 25.134 -9.320 12.375 1.00 0.00 C
|
| 876 |
+
ATOM 875 O TYR A 115 24.444 -8.647 15.081 1.00 0.00 O
|
| 877 |
+
ATOM 876 CG TYR A 115 26.044 -8.215 11.896 1.00 0.00 C
|
| 878 |
+
ATOM 877 CD1 TYR A 115 27.348 -8.486 11.490 1.00 0.00 C
|
| 879 |
+
ATOM 878 CD2 TYR A 115 25.602 -6.897 11.849 1.00 0.00 C
|
| 880 |
+
ATOM 879 CE1 TYR A 115 28.191 -7.471 11.049 1.00 0.00 C
|
| 881 |
+
ATOM 880 CE2 TYR A 115 26.435 -5.874 11.411 1.00 0.00 C
|
| 882 |
+
ATOM 881 OH TYR A 115 28.555 -5.161 10.577 1.00 0.00 O
|
| 883 |
+
ATOM 882 CZ TYR A 115 27.726 -6.170 11.012 1.00 0.00 C
|
| 884 |
+
ATOM 883 N VAL A 116 26.565 -9.244 15.805 1.00 0.00 N
|
| 885 |
+
ATOM 884 CA VAL A 116 26.469 -8.673 17.144 1.00 0.00 C
|
| 886 |
+
ATOM 885 C VAL A 116 27.696 -7.810 17.427 1.00 0.00 C
|
| 887 |
+
ATOM 886 CB VAL A 116 26.332 -9.773 18.221 1.00 0.00 C
|
| 888 |
+
ATOM 887 O VAL A 116 28.733 -7.962 16.778 1.00 0.00 O
|
| 889 |
+
ATOM 888 CG1 VAL A 116 24.984 -10.482 18.099 1.00 0.00 C
|
| 890 |
+
ATOM 889 CG2 VAL A 116 27.479 -10.776 18.107 1.00 0.00 C
|
| 891 |
+
ATOM 890 N PRO A 117 27.542 -6.872 18.407 1.00 0.00 N
|
| 892 |
+
ATOM 891 CA PRO A 117 28.677 -6.025 18.778 1.00 0.00 C
|
| 893 |
+
ATOM 892 C PRO A 117 29.846 -6.823 19.351 1.00 0.00 C
|
| 894 |
+
ATOM 893 CB PRO A 117 28.088 -5.087 19.834 1.00 0.00 C
|
| 895 |
+
ATOM 894 O PRO A 117 29.645 -7.706 20.189 1.00 0.00 O
|
| 896 |
+
ATOM 895 CG PRO A 117 26.611 -5.143 19.613 1.00 0.00 C
|
| 897 |
+
ATOM 896 CD PRO A 117 26.250 -6.523 19.147 1.00 0.00 C
|
| 898 |
+
ATOM 897 N VAL A 118 31.122 -6.509 18.875 1.00 0.00 N
|
| 899 |
+
ATOM 898 CA VAL A 118 32.314 -7.211 19.339 1.00 0.00 C
|
| 900 |
+
ATOM 899 C VAL A 118 33.359 -6.200 19.808 1.00 0.00 C
|
| 901 |
+
ATOM 900 CB VAL A 118 32.905 -8.115 18.234 1.00 0.00 C
|
| 902 |
+
ATOM 901 O VAL A 118 34.357 -6.573 20.429 1.00 0.00 O
|
| 903 |
+
ATOM 902 CG1 VAL A 118 31.937 -9.242 17.882 1.00 0.00 C
|
| 904 |
+
ATOM 903 CG2 VAL A 118 33.244 -7.289 16.994 1.00 0.00 C
|
| 905 |
+
ATOM 904 N HIS A 119 33.115 -4.919 19.548 1.00 0.00 N
|
| 906 |
+
ATOM 905 CA HIS A 119 34.035 -3.863 19.960 1.00 0.00 C
|
| 907 |
+
ATOM 906 C HIS A 119 33.313 -2.527 20.097 1.00 0.00 C
|
| 908 |
+
ATOM 907 CB HIS A 119 35.187 -3.738 18.961 1.00 0.00 C
|
| 909 |
+
ATOM 908 O HIS A 119 32.478 -2.178 19.259 1.00 0.00 O
|
| 910 |
+
ATOM 909 CG HIS A 119 36.137 -2.626 19.278 1.00 0.00 C
|
| 911 |
+
ATOM 910 CD2 HIS A 119 37.257 -2.604 20.038 1.00 0.00 C
|
| 912 |
+
ATOM 911 ND1 HIS A 119 35.976 -1.349 18.787 1.00 0.00 N
|
| 913 |
+
ATOM 912 CE1 HIS A 119 36.960 -0.586 19.234 1.00 0.00 C
|
| 914 |
+
ATOM 913 NE2 HIS A 119 37.750 -1.324 19.995 1.00 0.00 N
|
| 915 |
+
ATOM 914 N PHE A 120 33.605 -1.852 21.162 1.00 0.00 N
|
| 916 |
+
ATOM 915 CA PHE A 120 33.131 -0.486 21.354 1.00 0.00 C
|
| 917 |
+
ATOM 916 C PHE A 120 34.065 0.511 20.678 1.00 0.00 C
|
| 918 |
+
ATOM 917 CB PHE A 120 33.010 -0.162 22.847 1.00 0.00 C
|
| 919 |
+
ATOM 918 O PHE A 120 35.203 0.697 21.113 1.00 0.00 O
|
| 920 |
+
ATOM 919 CG PHE A 120 32.191 1.067 23.136 1.00 0.00 C
|
| 921 |
+
ATOM 920 CD1 PHE A 120 32.734 2.335 22.971 1.00 0.00 C
|
| 922 |
+
ATOM 921 CD2 PHE A 120 30.878 0.953 23.575 1.00 0.00 C
|
| 923 |
+
ATOM 922 CE1 PHE A 120 31.978 3.474 23.240 1.00 0.00 C
|
| 924 |
+
ATOM 923 CE2 PHE A 120 30.117 2.086 23.845 1.00 0.00 C
|
| 925 |
+
ATOM 924 CZ PHE A 120 30.669 3.346 23.677 1.00 0.00 C
|
| 926 |
+
ATOM 925 N ASP A 121 33.560 1.237 19.673 1.00 0.00 N
|
| 927 |
+
ATOM 926 CA ASP A 121 34.451 2.067 18.867 1.00 0.00 C
|
| 928 |
+
ATOM 927 C ASP A 121 34.489 3.501 19.392 1.00 0.00 C
|
| 929 |
+
ATOM 928 CB ASP A 121 34.017 2.055 17.400 1.00 0.00 C
|
| 930 |
+
ATOM 929 O ASP A 121 35.560 4.102 19.496 1.00 0.00 O
|
| 931 |
+
ATOM 930 CG ASP A 121 35.077 2.609 16.464 1.00 0.00 C
|
| 932 |
+
ATOM 931 OD1 ASP A 121 36.175 2.021 16.370 1.00 0.00 O
|
| 933 |
+
ATOM 932 OD2 ASP A 121 34.811 3.644 15.816 1.00 0.00 O
|
| 934 |
+
ATOM 933 N ALA A 122 33.297 4.003 19.697 1.00 0.00 N
|
| 935 |
+
ATOM 934 CA ALA A 122 33.262 5.378 20.187 1.00 0.00 C
|
| 936 |
+
ATOM 935 C ALA A 122 31.881 5.730 20.735 1.00 0.00 C
|
| 937 |
+
ATOM 936 CB ALA A 122 33.653 6.349 19.076 1.00 0.00 C
|
| 938 |
+
ATOM 937 O ALA A 122 30.920 4.983 20.538 1.00 0.00 O
|
| 939 |
+
ATOM 938 N SER A 123 31.823 6.754 21.491 1.00 0.00 N
|
| 940 |
+
ATOM 939 CA SER A 123 30.588 7.458 21.819 1.00 0.00 C
|
| 941 |
+
ATOM 940 C SER A 123 30.607 8.887 21.286 1.00 0.00 C
|
| 942 |
+
ATOM 941 CB SER A 123 30.365 7.473 23.333 1.00 0.00 C
|
| 943 |
+
ATOM 942 O SER A 123 31.640 9.558 21.331 1.00 0.00 O
|
| 944 |
+
ATOM 943 OG SER A 123 31.396 8.194 23.985 1.00 0.00 O
|
| 945 |
+
ATOM 944 N VAL A 124 29.451 9.290 20.680 1.00 0.00 N
|
| 946 |
+
ATOM 945 CA VAL A 124 29.410 10.603 20.046 1.00 0.00 C
|
| 947 |
+
ATOM 946 C VAL A 124 28.123 11.325 20.435 1.00 0.00 C
|
| 948 |
+
ATOM 947 CB VAL A 124 29.516 10.495 18.508 1.00 0.00 C
|
| 949 |
+
ATOM 948 O VAL A 124 27.116 10.687 20.750 1.00 0.00 O
|
| 950 |
+
ATOM 949 CG1 VAL A 124 30.873 9.924 18.099 1.00 0.00 C
|
| 951 |
+
ATOM 950 CG2 VAL A 124 28.382 9.633 17.955 1.00 0.00 C
|
| 952 |
+
ATOM 951 OXT VAL A 124 28.729 12.358 20.246 1.00 0.00 O
|
| 953 |
+
TER 952 VAL A 124
|
| 954 |
+
CONECT 194 642
|
| 955 |
+
CONECT 310 727
|
| 956 |
+
CONECT 446 842
|
| 957 |
+
CONECT 496 547
|
| 958 |
+
CONECT 547 496
|
| 959 |
+
CONECT 642 194
|
| 960 |
+
CONECT 727 310
|
| 961 |
+
CONECT 842 446
|
| 962 |
+
END
|
1qhc/1qhc_protein_processed_fix.pdb
ADDED
|
The diff for this file is too large to render.
See raw diff
|
|
|
1vkj/1vkj_ligand.mol2
ADDED
|
@@ -0,0 +1,94 @@
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|
| 1 |
+
###
|
| 2 |
+
### Created by X-TOOL on Mon Sep 10 21:12:52 2018
|
| 3 |
+
###
|
| 4 |
+
|
| 5 |
+
@<TRIPOS>MOLECULE
|
| 6 |
+
1vkj_ligand
|
| 7 |
+
38 40 1 0 0
|
| 8 |
+
SMALL
|
| 9 |
+
GAST_HUCK
|
| 10 |
+
|
| 11 |
+
|
| 12 |
+
@<TRIPOS>ATOM
|
| 13 |
+
1 P1 18.9850 85.5140 28.6730 P.3 1 A3P 0.2013
|
| 14 |
+
2 O1P 19.0000 86.0600 30.0970 O.co2 1 A3P -0.5537
|
| 15 |
+
3 O2P 19.6970 84.1740 28.6080 O.co2 1 A3P -0.5537
|
| 16 |
+
4 O3P 17.6240 85.4170 28.0210 O.co2 1 A3P -0.5537
|
| 17 |
+
5 P2 20.8180 88.6690 22.5970 P.3 1 A3P 0.2008
|
| 18 |
+
6 O4P 22.1350 89.1370 21.9970 O.co2 1 A3P -0.5537
|
| 19 |
+
7 O5P 19.7360 89.7240 22.4470 O.co2 1 A3P -0.5537
|
| 20 |
+
8 O6P 20.3500 87.3010 22.1140 O.co2 1 A3P -0.5537
|
| 21 |
+
9 O5 21.1260 88.5330 24.2000 O.3 1 A3P -0.2734
|
| 22 |
+
10 C5 20.0680 88.1380 25.0920 C.3 1 A3P 0.1075
|
| 23 |
+
11 C4 20.4570 88.4020 26.5140 C.3 1 A3P 0.1229
|
| 24 |
+
12 O4 20.4640 89.8180 26.7630 O.3 1 A3P -0.3361
|
| 25 |
+
13 C3 19.5210 87.8500 27.5760 C.3 1 A3P 0.1487
|
| 26 |
+
14 O3 19.9300 86.5220 27.8410 O.3 1 A3P -0.2674
|
| 27 |
+
15 C2 19.7730 88.7740 28.7720 C.3 1 A3P 0.1432
|
| 28 |
+
16 O2 20.6440 88.1730 29.6860 O.3 1 A3P -0.3832
|
| 29 |
+
17 C1 20.4720 89.9970 28.1510 C.3 1 A3P 0.2013
|
| 30 |
+
18 N9 19.8770 91.3010 28.4570 N.pl3 1 A3P -0.1919
|
| 31 |
+
19 C8 20.5720 92.4700 28.6470 C.2 1 A3P 0.1123
|
| 32 |
+
20 N7 19.8140 93.5010 28.9460 N.2 1 A3P -0.2958
|
| 33 |
+
21 C5 18.5370 92.9750 28.9510 C.ar 1 A3P 0.1045
|
| 34 |
+
22 C6 17.2990 93.5530 29.2310 C.ar 1 A3P 0.1298
|
| 35 |
+
23 N6 17.1690 94.8130 29.6470 N.pl3 1 A3P -0.3152
|
| 36 |
+
24 N1 16.1910 92.7810 29.0990 N.ar 1 A3P -0.2698
|
| 37 |
+
25 C2 16.3560 91.4960 28.7640 C.ar 1 A3P 0.0533
|
| 38 |
+
26 N3 17.4910 90.8140 28.5450 N.ar 1 A3P -0.2714
|
| 39 |
+
27 C4 18.5550 91.6260 28.6360 C.ar 1 A3P 0.1613
|
| 40 |
+
28 H1 19.8687 87.0638 24.9644 H 1 A3P 0.0639
|
| 41 |
+
29 H2 19.1597 88.7104 24.8527 H 1 A3P 0.0639
|
| 42 |
+
30 H3 21.4619 87.9830 26.6712 H 1 A3P 0.0654
|
| 43 |
+
31 H4 18.4670 87.8763 27.2622 H 1 A3P 0.0704
|
| 44 |
+
32 H5 18.8312 89.0520 29.2678 H 1 A3P 0.0680
|
| 45 |
+
33 H6 20.2619 87.3616 29.9993 H 1 A3P 0.2101
|
| 46 |
+
34 H7 21.5111 90.0119 28.5117 H 1 A3P 0.0996
|
| 47 |
+
35 H8 21.6553 92.5368 28.5578 H 1 A3P 0.1349
|
| 48 |
+
36 H9 16.2333 95.1971 29.8416 H 1 A3P 0.1820
|
| 49 |
+
37 H10 18.0042 95.4023 29.7737 H 1 A3P 0.1820
|
| 50 |
+
38 H11 15.4419 90.9239 28.6537 H 1 A3P 0.0996
|
| 51 |
+
@<TRIPOS>BOND
|
| 52 |
+
1 1 2 ar
|
| 53 |
+
2 1 3 ar
|
| 54 |
+
3 1 4 ar
|
| 55 |
+
4 14 1 1
|
| 56 |
+
5 5 6 ar
|
| 57 |
+
6 5 7 ar
|
| 58 |
+
7 5 8 ar
|
| 59 |
+
8 9 5 1
|
| 60 |
+
9 10 9 1
|
| 61 |
+
10 11 10 1
|
| 62 |
+
11 11 12 1
|
| 63 |
+
12 13 11 1
|
| 64 |
+
13 12 17 1
|
| 65 |
+
14 13 14 1
|
| 66 |
+
15 13 15 1
|
| 67 |
+
16 15 16 1
|
| 68 |
+
17 15 17 1
|
| 69 |
+
18 17 18 1
|
| 70 |
+
19 18 19 1
|
| 71 |
+
20 18 27 1
|
| 72 |
+
21 19 20 2
|
| 73 |
+
22 20 21 1
|
| 74 |
+
23 21 22 ar
|
| 75 |
+
24 21 27 ar
|
| 76 |
+
25 22 23 1
|
| 77 |
+
26 22 24 ar
|
| 78 |
+
27 24 25 ar
|
| 79 |
+
28 25 26 ar
|
| 80 |
+
29 26 27 ar
|
| 81 |
+
30 10 28 1
|
| 82 |
+
31 10 29 1
|
| 83 |
+
32 11 30 1
|
| 84 |
+
33 13 31 1
|
| 85 |
+
34 15 32 1
|
| 86 |
+
35 16 33 1
|
| 87 |
+
36 17 34 1
|
| 88 |
+
37 19 35 1
|
| 89 |
+
38 23 36 1
|
| 90 |
+
39 23 37 1
|
| 91 |
+
40 25 38 1
|
| 92 |
+
@<TRIPOS>SUBSTRUCTURE
|
| 93 |
+
1 A3P 1
|
| 94 |
+
|
1vkj/1vkj_ligand.sdf
ADDED
|
@@ -0,0 +1,92 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
1vkj_ligand
|
| 2 |
+
-I-interpret-
|
| 3 |
+
|
| 4 |
+
42 44 0 0 0 0 0 0 0 0999 V2000
|
| 5 |
+
18.9850 85.5140 28.6730 P 0 0 0 0 0
|
| 6 |
+
19.0000 86.0600 30.0970 O 0 0 0 0 0
|
| 7 |
+
19.6970 84.1740 28.6080 O 0 0 0 0 0
|
| 8 |
+
17.6240 85.4170 28.0210 O 0 0 0 0 0
|
| 9 |
+
20.8180 88.6690 22.5970 P 0 0 0 0 0
|
| 10 |
+
22.1350 89.1370 21.9970 O 0 0 0 0 0
|
| 11 |
+
19.7360 89.7240 22.4470 O 0 0 0 0 0
|
| 12 |
+
20.3500 87.3010 22.1140 O 0 0 0 0 0
|
| 13 |
+
21.1260 88.5330 24.2000 O 0 0 0 0 0
|
| 14 |
+
20.0680 88.1380 25.0920 C 0 0 0 0 0
|
| 15 |
+
20.4570 88.4020 26.5140 C 0 0 0 0 0
|
| 16 |
+
20.4640 89.8180 26.7630 O 0 0 0 0 0
|
| 17 |
+
19.5210 87.8500 27.5760 C 0 0 0 0 0
|
| 18 |
+
19.9300 86.5220 27.8410 O 0 0 0 0 0
|
| 19 |
+
19.7730 88.7740 28.7720 C 0 0 0 0 0
|
| 20 |
+
20.6440 88.1730 29.6860 O 0 0 0 0 0
|
| 21 |
+
20.4720 89.9970 28.1510 C 0 0 0 0 0
|
| 22 |
+
19.8770 91.3010 28.4570 N 0 0 0 0 0
|
| 23 |
+
20.5720 92.4700 28.6470 C 0 0 0 0 0
|
| 24 |
+
19.8140 93.5010 28.9460 N 0 0 0 0 0
|
| 25 |
+
18.5370 92.9750 28.9510 C 0 0 0 0 0
|
| 26 |
+
17.2990 93.5530 29.2310 C 0 0 0 0 0
|
| 27 |
+
17.1690 94.8130 29.6470 N 0 0 0 0 0
|
| 28 |
+
16.1910 92.7810 29.0990 N 0 0 0 0 0
|
| 29 |
+
16.3560 91.4960 28.7640 C 0 0 0 0 0
|
| 30 |
+
17.4910 90.8140 28.5450 N 0 0 0 0 0
|
| 31 |
+
18.5550 91.6260 28.6360 C 0 0 0 0 0
|
| 32 |
+
19.9036 86.0823 30.4205 H 0 0 0 0 0
|
| 33 |
+
20.5584 84.2500 29.0249 H 0 0 0 0 0
|
| 34 |
+
22.7972 88.4507 22.1069 H 0 0 0 0 0
|
| 35 |
+
21.0594 86.6638 22.2249 H 0 0 0 0 0
|
| 36 |
+
19.8791 87.0717 24.9680 H 0 0 0 0 0
|
| 37 |
+
19.1724 88.7130 24.8567 H 0 0 0 0 0
|
| 38 |
+
21.4245 87.9073 26.5999 H 0 0 0 0 0
|
| 39 |
+
18.4642 87.8228 27.3103 H 0 0 0 0 0
|
| 40 |
+
18.8538 89.0142 29.3062 H 0 0 0 0 0
|
| 41 |
+
20.7887 88.7667 30.4264 H 0 0 0 0 0
|
| 42 |
+
21.4697 90.0346 28.5884 H 0 0 0 0 0
|
| 43 |
+
21.6563 92.5368 28.5577 H 0 0 0 0 0
|
| 44 |
+
17.9961 95.3965 29.7725 H 0 0 0 0 0
|
| 45 |
+
16.2424 95.1934 29.8397 H 0 0 0 0 0
|
| 46 |
+
15.4368 90.9207 28.6531 H 0 0 0 0 0
|
| 47 |
+
1 2 1 0 0 0
|
| 48 |
+
1 3 1 0 0 0
|
| 49 |
+
1 4 2 0 0 0
|
| 50 |
+
14 1 1 0 0 0
|
| 51 |
+
5 6 1 0 0 0
|
| 52 |
+
5 7 2 0 0 0
|
| 53 |
+
5 8 1 0 0 0
|
| 54 |
+
9 5 1 0 0 0
|
| 55 |
+
10 9 1 0 0 0
|
| 56 |
+
11 10 1 0 0 0
|
| 57 |
+
11 12 1 0 0 0
|
| 58 |
+
13 11 1 0 0 0
|
| 59 |
+
12 17 1 0 0 0
|
| 60 |
+
13 14 1 0 0 0
|
| 61 |
+
13 15 1 0 0 0
|
| 62 |
+
15 16 1 0 0 0
|
| 63 |
+
15 17 1 0 0 0
|
| 64 |
+
17 18 1 0 0 0
|
| 65 |
+
18 19 4 0 0 0
|
| 66 |
+
18 27 4 0 0 0
|
| 67 |
+
19 20 4 0 0 0
|
| 68 |
+
20 21 4 0 0 0
|
| 69 |
+
21 22 4 0 0 0
|
| 70 |
+
21 27 4 0 0 0
|
| 71 |
+
22 23 1 0 0 0
|
| 72 |
+
22 24 4 0 0 0
|
| 73 |
+
24 25 4 0 0 0
|
| 74 |
+
25 26 4 0 0 0
|
| 75 |
+
26 27 4 0 0 0
|
| 76 |
+
2 28 1 0 0 0
|
| 77 |
+
3 29 1 0 0 0
|
| 78 |
+
6 30 1 0 0 0
|
| 79 |
+
8 31 1 0 0 0
|
| 80 |
+
10 32 1 0 0 0
|
| 81 |
+
10 33 1 0 0 0
|
| 82 |
+
11 34 1 0 0 0
|
| 83 |
+
13 35 1 0 0 0
|
| 84 |
+
15 36 1 0 0 0
|
| 85 |
+
16 37 1 0 0 0
|
| 86 |
+
17 38 1 0 0 0
|
| 87 |
+
19 39 1 0 0 0
|
| 88 |
+
23 40 1 0 0 0
|
| 89 |
+
23 41 1 0 0 0
|
| 90 |
+
25 42 1 0 0 0
|
| 91 |
+
M END
|
| 92 |
+
$$$$
|
1vkj/1vkj_protein_esmfold_aligned_tr_fix.pdb
ADDED
|
The diff for this file is too large to render.
See raw diff
|
|
|
1vkj/1vkj_protein_processed_fix.pdb
ADDED
|
The diff for this file is too large to render.
See raw diff
|
|
|
2aq7/2aq7_ligand.mol2
ADDED
|
@@ -0,0 +1,78 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
###
|
| 2 |
+
### Created by X-TOOL on Mon Sep 10 21:12:54 2018
|
| 3 |
+
###
|
| 4 |
+
|
| 5 |
+
@<TRIPOS>MOLECULE
|
| 6 |
+
2aq7_ligand
|
| 7 |
+
31 31 1 0 0
|
| 8 |
+
SMALL
|
| 9 |
+
GAST_HUCK
|
| 10 |
+
|
| 11 |
+
|
| 12 |
+
@<TRIPOS>ATOM
|
| 13 |
+
1 O1 22.1480 87.6940 0.9150 O.2 1 TL5 -0.3592
|
| 14 |
+
2 C1 22.9200 88.6240 1.0870 C.2 1 TL5 0.1861
|
| 15 |
+
3 C2 23.2540 89.0800 2.2900 C.2 1 TL5 0.0554
|
| 16 |
+
4 C9 22.6340 88.5620 3.5550 C.3 1 TL5 -0.0099
|
| 17 |
+
5 S1 23.6250 89.4110 -0.2000 S.3 1 TL5 -0.1498
|
| 18 |
+
6 C4 24.4690 90.5370 0.8680 C.3 1 TL5 -0.0114
|
| 19 |
+
7 C3 24.1710 90.0360 2.2570 C.2 1 TL5 0.0329
|
| 20 |
+
8 O2 24.7800 90.5040 3.3460 O.3 1 TL5 -0.3523
|
| 21 |
+
9 C10 23.9290 91.9580 0.7290 C.3 1 TL5 -0.1147
|
| 22 |
+
10 C5 25.9640 90.4880 0.6030 C.2 1 TL5 -0.1286
|
| 23 |
+
11 C6 26.5520 90.7770 -0.5790 C.2 1 TL5 -0.0292
|
| 24 |
+
12 C11 25.8180 91.2110 -1.8240 C.3 1 TL5 -0.0084
|
| 25 |
+
13 C7 28.0250 90.6920 -0.6220 C.2 1 TL5 -0.0062
|
| 26 |
+
14 C8 28.7210 91.0360 -1.7040 C.2 1 TL5 -0.0255
|
| 27 |
+
15 C12 30.2190 90.9570 -1.6720 C.3 1 TL5 -0.0049
|
| 28 |
+
16 H1 21.9056 87.7747 3.3107 H 1 TL5 0.0463
|
| 29 |
+
17 H2 22.1233 89.3848 4.0767 H 1 TL5 0.0463
|
| 30 |
+
18 H3 23.4186 88.1468 4.2046 H 1 TL5 0.0463
|
| 31 |
+
19 H4 24.4455 90.0538 4.1127 H 1 TL5 0.2471
|
| 32 |
+
20 H5 24.4783 92.6270 1.4078 H 1 TL5 0.0003
|
| 33 |
+
21 H6 22.8598 91.9709 0.9873 H 1 TL5 0.0003
|
| 34 |
+
22 H7 24.0598 92.3002 -0.3082 H 1 TL5 0.0003
|
| 35 |
+
23 H8 26.6117 90.1977 1.4289 H 1 TL5 0.0288
|
| 36 |
+
24 H9 26.5408 91.3790 -2.6360 H 1 TL5 0.0520
|
| 37 |
+
25 H10 25.2713 92.1437 -1.6210 H 1 TL5 0.0520
|
| 38 |
+
26 H11 25.1069 90.4267 -2.1226 H 1 TL5 0.0520
|
| 39 |
+
27 H12 28.5590 90.3370 0.2582 H 1 TL5 0.0637
|
| 40 |
+
28 H13 28.2076 91.3716 -2.6038 H 1 TL5 0.1211
|
| 41 |
+
29 H14 30.6238 91.2760 -2.6438 H 1 TL5 0.0563
|
| 42 |
+
30 H15 30.5273 89.9209 -1.4687 H 1 TL5 0.0563
|
| 43 |
+
31 H16 30.6041 91.6163 -0.8802 H 1 TL5 0.0563
|
| 44 |
+
@<TRIPOS>BOND
|
| 45 |
+
1 1 2 2
|
| 46 |
+
2 2 3 1
|
| 47 |
+
3 2 5 1
|
| 48 |
+
4 3 4 1
|
| 49 |
+
5 3 7 2
|
| 50 |
+
6 5 6 1
|
| 51 |
+
7 6 7 1
|
| 52 |
+
8 6 9 1
|
| 53 |
+
9 6 10 1
|
| 54 |
+
10 7 8 1
|
| 55 |
+
11 10 11 2
|
| 56 |
+
12 11 12 1
|
| 57 |
+
13 11 13 1
|
| 58 |
+
14 13 14 2
|
| 59 |
+
15 14 15 1
|
| 60 |
+
16 4 16 1
|
| 61 |
+
17 4 17 1
|
| 62 |
+
18 4 18 1
|
| 63 |
+
19 8 19 1
|
| 64 |
+
20 9 20 1
|
| 65 |
+
21 9 21 1
|
| 66 |
+
22 9 22 1
|
| 67 |
+
23 10 23 1
|
| 68 |
+
24 12 24 1
|
| 69 |
+
25 12 25 1
|
| 70 |
+
26 12 26 1
|
| 71 |
+
27 13 27 1
|
| 72 |
+
28 14 28 1
|
| 73 |
+
29 15 29 1
|
| 74 |
+
30 15 30 1
|
| 75 |
+
31 15 31 1
|
| 76 |
+
@<TRIPOS>SUBSTRUCTURE
|
| 77 |
+
1 TL5 1
|
| 78 |
+
|
2aq7/2aq7_ligand.sdf
ADDED
|
@@ -0,0 +1,68 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
2aq7_ligand
|
| 2 |
+
-I-interpret-
|
| 3 |
+
|
| 4 |
+
31 31 0 0 0 0 0 0 0 0999 V2000
|
| 5 |
+
22.1480 87.6940 0.9150 O 0 0 0 0 0
|
| 6 |
+
22.9200 88.6240 1.0870 C 0 0 0 0 0
|
| 7 |
+
23.2540 89.0800 2.2900 C 0 0 0 0 0
|
| 8 |
+
22.6340 88.5620 3.5550 C 0 0 0 0 0
|
| 9 |
+
23.6250 89.4110 -0.2000 S 0 0 0 0 0
|
| 10 |
+
24.4690 90.5370 0.8680 C 0 0 0 0 0
|
| 11 |
+
24.1710 90.0360 2.2570 C 0 0 0 0 0
|
| 12 |
+
24.7800 90.5040 3.3460 O 0 0 0 0 0
|
| 13 |
+
23.9290 91.9580 0.7290 C 0 0 0 0 0
|
| 14 |
+
25.9640 90.4880 0.6030 C 0 0 0 0 0
|
| 15 |
+
26.5520 90.7770 -0.5790 C 0 0 0 0 0
|
| 16 |
+
25.8180 91.2110 -1.8240 C 0 0 0 0 0
|
| 17 |
+
28.0250 90.6920 -0.6220 C 0 0 0 0 0
|
| 18 |
+
28.7210 91.0360 -1.7040 C 0 0 0 0 0
|
| 19 |
+
30.2190 90.9570 -1.6720 C 0 0 0 0 0
|
| 20 |
+
23.4124 88.1509 4.1978 H 0 0 0 0 0
|
| 21 |
+
22.1284 89.3782 4.0710 H 0 0 0 0 0
|
| 22 |
+
21.9125 87.7820 3.3116 H 0 0 0 0 0
|
| 23 |
+
25.4036 91.1887 3.0932 H 0 0 0 0 0
|
| 24 |
+
22.8520 91.9541 0.8970 H 0 0 0 0 0
|
| 25 |
+
24.4105 92.6019 1.4650 H 0 0 0 0 0
|
| 26 |
+
24.1403 92.3291 -0.2739 H 0 0 0 0 0
|
| 27 |
+
26.6123 90.1974 1.4297 H 0 0 0 0 0
|
| 28 |
+
25.1137 90.4331 -2.1188 H 0 0 0 0 0
|
| 29 |
+
25.2767 92.1352 -1.6215 H 0 0 0 0 0
|
| 30 |
+
26.5352 91.3771 -2.6278 H 0 0 0 0 0
|
| 31 |
+
28.5595 90.3367 0.2590 H 0 0 0 0 0
|
| 32 |
+
28.2071 91.3719 -2.6047 H 0 0 0 0 0
|
| 33 |
+
30.5993 91.6107 -0.8870 H 0 0 0 0 0
|
| 34 |
+
30.5232 89.9299 -1.4704 H 0 0 0 0 0
|
| 35 |
+
30.6189 91.2733 -2.6354 H 0 0 0 0 0
|
| 36 |
+
1 2 2 0 0 0
|
| 37 |
+
2 3 1 0 0 0
|
| 38 |
+
2 5 1 0 0 0
|
| 39 |
+
3 4 1 0 0 0
|
| 40 |
+
3 7 2 0 0 0
|
| 41 |
+
5 6 1 0 0 0
|
| 42 |
+
6 7 1 0 0 0
|
| 43 |
+
6 9 1 0 0 0
|
| 44 |
+
6 10 1 0 0 0
|
| 45 |
+
7 8 1 0 0 0
|
| 46 |
+
10 11 2 0 0 0
|
| 47 |
+
11 12 1 0 0 0
|
| 48 |
+
11 13 1 0 0 0
|
| 49 |
+
13 14 2 0 0 0
|
| 50 |
+
14 15 1 0 0 0
|
| 51 |
+
4 16 1 0 0 0
|
| 52 |
+
4 17 1 0 0 0
|
| 53 |
+
4 18 1 0 0 0
|
| 54 |
+
8 19 1 0 0 0
|
| 55 |
+
9 20 1 0 0 0
|
| 56 |
+
9 21 1 0 0 0
|
| 57 |
+
9 22 1 0 0 0
|
| 58 |
+
10 23 1 0 0 0
|
| 59 |
+
12 24 1 0 0 0
|
| 60 |
+
12 25 1 0 0 0
|
| 61 |
+
12 26 1 0 0 0
|
| 62 |
+
13 27 1 0 0 0
|
| 63 |
+
14 28 1 0 0 0
|
| 64 |
+
15 29 1 0 0 0
|
| 65 |
+
15 30 1 0 0 0
|
| 66 |
+
15 31 1 0 0 0
|
| 67 |
+
M END
|
| 68 |
+
$$$$
|
2aq7/2aq7_protein_esmfold_aligned_tr_fix.pdb
ADDED
|
The diff for this file is too large to render.
See raw diff
|
|
|
2aq7/2aq7_protein_processed_fix.pdb
ADDED
|
The diff for this file is too large to render.
See raw diff
|
|
|
2bdl/2bdl_ligand.mol2
ADDED
|
@@ -0,0 +1,178 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
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|
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|
|
|
|
|
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|
|
|
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|
|
|
|
|
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|
|
|
|
|
|
|
|
|
|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
###
|
| 2 |
+
### Created by X-TOOL on Mon Sep 10 21:12:54 2018
|
| 3 |
+
###
|
| 4 |
+
|
| 5 |
+
@<TRIPOS>MOLECULE
|
| 6 |
+
2bdl_ligand
|
| 7 |
+
80 82 1 0 0
|
| 8 |
+
SMALL
|
| 9 |
+
GAST_HUCK
|
| 10 |
+
|
| 11 |
+
|
| 12 |
+
@<TRIPOS>ATOM
|
| 13 |
+
1 C1 73.6880 93.3360 163.1710 C.3 1 4PR -0.0653
|
| 14 |
+
2 C2 74.8140 94.2470 162.7650 C.3 1 4PR -0.0558
|
| 15 |
+
3 C3 75.4970 94.7630 164.0060 C.3 1 4PR -0.0510
|
| 16 |
+
4 C4 76.9670 94.4400 163.9220 C.3 1 4PR -0.0253
|
| 17 |
+
5 C5 77.7540 95.2610 164.9210 C.3 1 4PR 0.0869
|
| 18 |
+
6 N1 77.8600 96.5960 164.3880 N.am 1 4PR -0.2547
|
| 19 |
+
7 C6 77.3860 97.6910 165.0670 C.2 1 4PR 0.3203
|
| 20 |
+
8 O1 76.7810 97.6850 166.1280 O.2 1 4PR -0.3775
|
| 21 |
+
9 O2 77.7080 98.8080 164.3680 O.3 1 4PR -0.2580
|
| 22 |
+
10 C7 77.2310 100.0130 164.9500 C.3 1 4PR 0.1150
|
| 23 |
+
11 C8 75.8370 100.2550 164.4240 C.3 1 4PR 0.0655
|
| 24 |
+
12 N2 76.0300 101.1070 163.2860 N.am 1 4PR -0.2533
|
| 25 |
+
13 C9 77.3380 101.7040 163.2270 C.3 1 4PR 0.0424
|
| 26 |
+
14 C10 78.0740 101.1610 164.4330 C.3 1 4PR 0.0176
|
| 27 |
+
15 C11 78.2030 102.2490 165.4760 C.3 1 4PR -0.0552
|
| 28 |
+
16 C12 79.4580 100.6890 164.0530 C.3 1 4PR -0.0552
|
| 29 |
+
17 C13 74.9900 101.4140 162.4370 C.2 1 4PR 0.2757
|
| 30 |
+
18 O3 73.8350 101.0580 162.6400 O.2 1 4PR -0.3961
|
| 31 |
+
19 N3 75.3870 102.1560 161.3500 N.am 1 4PR -0.2437
|
| 32 |
+
20 C14 74.7040 102.0470 160.1560 C.2 1 4PR 0.0911
|
| 33 |
+
21 C15 74.6450 100.9520 159.2600 C.2 1 4PR 0.0365
|
| 34 |
+
22 C16 75.3000 99.6420 159.3680 C.3 1 4PR -0.0289
|
| 35 |
+
23 N4 73.8750 101.2310 158.2020 N.2 1 4PR -0.1798
|
| 36 |
+
24 O4 73.4180 102.5330 158.4030 O.3 1 4PR -0.1983
|
| 37 |
+
25 C17 73.9200 103.0140 159.5740 C.2 1 4PR 0.1389
|
| 38 |
+
26 C18 73.5430 104.3850 159.9520 C.3 1 4PR -0.0025
|
| 39 |
+
27 C19 79.1750 94.7640 164.9490 C.3 1 4PR 0.1663
|
| 40 |
+
28 O5 80.0290 95.1870 163.9000 O.3 1 4PR -0.3691
|
| 41 |
+
29 C20 79.2640 93.2730 165.1390 C.2 1 4PR 0.2093
|
| 42 |
+
30 O6 78.8120 92.7640 166.1540 O.2 1 4PR -0.3940
|
| 43 |
+
31 N5 79.8630 92.6270 164.0760 N.am 1 4PR -0.2707
|
| 44 |
+
32 C21 80.0080 91.1840 164.0450 C.3 1 4PR 0.0727
|
| 45 |
+
33 C22 80.8940 90.7620 162.8960 C.3 1 4PR -0.0319
|
| 46 |
+
34 C23 78.7020 90.4690 163.9270 C.ar 1 4PR -0.0183
|
| 47 |
+
35 C24 78.5010 89.2980 164.6270 C.ar 1 4PR -0.0582
|
| 48 |
+
36 C25 77.3040 88.6240 164.5300 C.ar 1 4PR -0.0685
|
| 49 |
+
37 C26 76.2970 89.1200 163.7330 C.ar 1 4PR -0.0687
|
| 50 |
+
38 C27 76.4930 90.2870 163.0320 C.ar 1 4PR -0.0685
|
| 51 |
+
39 C28 77.6910 90.9590 163.1270 C.ar 1 4PR -0.0582
|
| 52 |
+
40 H1 73.1830 92.9540 162.2715 H 1 4PR 0.0230
|
| 53 |
+
41 H2 72.9677 93.8950 163.7864 H 1 4PR 0.0230
|
| 54 |
+
42 H3 74.0898 92.4927 163.7519 H 1 4PR 0.0230
|
| 55 |
+
43 H4 74.4144 95.0920 162.1852 H 1 4PR 0.0263
|
| 56 |
+
44 H5 75.5365 93.6898 162.1507 H 1 4PR 0.0263
|
| 57 |
+
45 H6 75.0629 94.2810 164.8944 H 1 4PR 0.0266
|
| 58 |
+
46 H7 75.3614 95.8523 164.0767 H 1 4PR 0.0266
|
| 59 |
+
47 H8 77.3282 94.6631 162.9072 H 1 4PR 0.0290
|
| 60 |
+
48 H9 77.1146 93.3714 164.1371 H 1 4PR 0.0290
|
| 61 |
+
49 H10 77.2875 95.2408 165.9170 H 1 4PR 0.0607
|
| 62 |
+
50 H11 78.2922 96.7287 163.4960 H 1 4PR 0.1873
|
| 63 |
+
51 H12 77.2491 99.9597 166.0486 H 1 4PR 0.0674
|
| 64 |
+
52 H13 75.2154 100.7531 165.1826 H 1 4PR 0.0549
|
| 65 |
+
53 H14 75.3633 99.3081 164.1258 H 1 4PR 0.0549
|
| 66 |
+
54 H15 77.2649 102.8003 163.2806 H 1 4PR 0.0526
|
| 67 |
+
55 H16 77.8526 101.4157 162.2985 H 1 4PR 0.0526
|
| 68 |
+
56 H17 78.7378 101.8549 166.3527 H 1 4PR 0.0237
|
| 69 |
+
57 H18 77.2011 102.5870 165.7792 H 1 4PR 0.0237
|
| 70 |
+
58 H19 78.7639 103.0962 165.0547 H 1 4PR 0.0237
|
| 71 |
+
59 H20 79.3796 99.8966 163.2941 H 1 4PR 0.0237
|
| 72 |
+
60 H21 79.9683 100.2943 164.9439 H 1 4PR 0.0237
|
| 73 |
+
61 H22 80.0337 101.5325 163.6442 H 1 4PR 0.0237
|
| 74 |
+
62 H23 76.1697 102.7739 161.4245 H 1 4PR 0.2079
|
| 75 |
+
63 H24 75.0382 99.0280 158.4937 H 1 4PR 0.0362
|
| 76 |
+
64 H25 74.9617 99.1373 160.2850 H 1 4PR 0.0362
|
| 77 |
+
65 H26 76.3907 99.7794 159.4062 H 1 4PR 0.0362
|
| 78 |
+
66 H27 72.8838 104.8098 159.1807 H 1 4PR 0.0395
|
| 79 |
+
67 H28 74.4486 105.0030 160.0412 H 1 4PR 0.0395
|
| 80 |
+
68 H29 73.0147 104.3673 160.9166 H 1 4PR 0.0395
|
| 81 |
+
69 H30 79.6044 95.2077 165.8593 H 1 4PR 0.0861
|
| 82 |
+
70 H31 80.8926 94.8116 164.0254 H 1 4PR 0.2134
|
| 83 |
+
71 H32 80.2057 93.1677 163.3077 H 1 4PR 0.1881
|
| 84 |
+
72 H33 80.4839 90.8746 164.9872 H 1 4PR 0.0716
|
| 85 |
+
73 H34 80.9906 89.6663 162.8907 H 1 4PR 0.0274
|
| 86 |
+
74 H35 81.8885 91.2171 163.0135 H 1 4PR 0.0274
|
| 87 |
+
75 H36 80.4479 91.0953 161.9474 H 1 4PR 0.0274
|
| 88 |
+
76 H37 79.2904 88.9055 165.2578 H 1 4PR 0.0557
|
| 89 |
+
77 H38 77.1547 87.7027 165.0813 H 1 4PR 0.0599
|
| 90 |
+
78 H39 75.3529 88.5926 163.6582 H 1 4PR 0.0559
|
| 91 |
+
79 H40 75.7020 90.6789 162.4029 H 1 4PR 0.0599
|
| 92 |
+
80 H41 77.8402 91.8772 162.5706 H 1 4PR 0.0557
|
| 93 |
+
@<TRIPOS>BOND
|
| 94 |
+
1 1 2 1
|
| 95 |
+
2 2 3 1
|
| 96 |
+
3 3 4 1
|
| 97 |
+
4 4 5 1
|
| 98 |
+
5 5 6 1
|
| 99 |
+
6 5 27 1
|
| 100 |
+
7 6 7 am
|
| 101 |
+
8 7 8 2
|
| 102 |
+
9 7 9 1
|
| 103 |
+
10 9 10 1
|
| 104 |
+
11 10 11 1
|
| 105 |
+
12 10 14 1
|
| 106 |
+
13 11 12 1
|
| 107 |
+
14 12 13 1
|
| 108 |
+
15 12 17 am
|
| 109 |
+
16 13 14 1
|
| 110 |
+
17 14 15 1
|
| 111 |
+
18 14 16 1
|
| 112 |
+
19 17 18 2
|
| 113 |
+
20 17 19 am
|
| 114 |
+
21 19 20 1
|
| 115 |
+
22 20 21 1
|
| 116 |
+
23 20 25 2
|
| 117 |
+
24 21 22 1
|
| 118 |
+
25 21 23 2
|
| 119 |
+
26 23 24 1
|
| 120 |
+
27 24 25 1
|
| 121 |
+
28 25 26 1
|
| 122 |
+
29 27 28 1
|
| 123 |
+
30 27 29 1
|
| 124 |
+
31 29 30 2
|
| 125 |
+
32 29 31 am
|
| 126 |
+
33 31 32 1
|
| 127 |
+
34 32 33 1
|
| 128 |
+
35 32 34 1
|
| 129 |
+
36 34 35 ar
|
| 130 |
+
37 34 39 ar
|
| 131 |
+
38 35 36 ar
|
| 132 |
+
39 36 37 ar
|
| 133 |
+
40 37 38 ar
|
| 134 |
+
41 38 39 ar
|
| 135 |
+
42 1 40 1
|
| 136 |
+
43 1 41 1
|
| 137 |
+
44 1 42 1
|
| 138 |
+
45 2 43 1
|
| 139 |
+
46 2 44 1
|
| 140 |
+
47 3 45 1
|
| 141 |
+
48 3 46 1
|
| 142 |
+
49 4 47 1
|
| 143 |
+
50 4 48 1
|
| 144 |
+
51 5 49 1
|
| 145 |
+
52 6 50 1
|
| 146 |
+
53 10 51 1
|
| 147 |
+
54 11 52 1
|
| 148 |
+
55 11 53 1
|
| 149 |
+
56 13 54 1
|
| 150 |
+
57 13 55 1
|
| 151 |
+
58 15 56 1
|
| 152 |
+
59 15 57 1
|
| 153 |
+
60 15 58 1
|
| 154 |
+
61 16 59 1
|
| 155 |
+
62 16 60 1
|
| 156 |
+
63 16 61 1
|
| 157 |
+
64 19 62 1
|
| 158 |
+
65 22 63 1
|
| 159 |
+
66 22 64 1
|
| 160 |
+
67 22 65 1
|
| 161 |
+
68 26 66 1
|
| 162 |
+
69 26 67 1
|
| 163 |
+
70 26 68 1
|
| 164 |
+
71 27 69 1
|
| 165 |
+
72 28 70 1
|
| 166 |
+
73 31 71 1
|
| 167 |
+
74 32 72 1
|
| 168 |
+
75 33 73 1
|
| 169 |
+
76 33 74 1
|
| 170 |
+
77 33 75 1
|
| 171 |
+
78 35 76 1
|
| 172 |
+
79 36 77 1
|
| 173 |
+
80 37 78 1
|
| 174 |
+
81 38 79 1
|
| 175 |
+
82 39 80 1
|
| 176 |
+
@<TRIPOS>SUBSTRUCTURE
|
| 177 |
+
1 4PR 1
|
| 178 |
+
|
2bdl/2bdl_ligand.sdf
ADDED
|
@@ -0,0 +1,168 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
2bdl_ligand
|
| 2 |
+
-I-interpret-
|
| 3 |
+
|
| 4 |
+
80 82 0 0 0 0 0 0 0 0999 V2000
|
| 5 |
+
73.6880 93.3360 163.1710 C 0 0 0 0 0
|
| 6 |
+
74.8140 94.2470 162.7650 C 0 0 0 0 0
|
| 7 |
+
75.4970 94.7630 164.0060 C 0 0 0 0 0
|
| 8 |
+
76.9670 94.4400 163.9220 C 0 0 0 0 0
|
| 9 |
+
77.7540 95.2610 164.9210 C 0 0 0 0 0
|
| 10 |
+
77.8600 96.5960 164.3880 N 0 0 0 0 0
|
| 11 |
+
77.3860 97.6910 165.0670 C 0 0 0 0 0
|
| 12 |
+
76.7810 97.6850 166.1280 O 0 0 0 0 0
|
| 13 |
+
77.7080 98.8080 164.3680 O 0 0 0 0 0
|
| 14 |
+
77.2310 100.0130 164.9500 C 0 0 0 0 0
|
| 15 |
+
75.8370 100.2550 164.4240 C 0 0 0 0 0
|
| 16 |
+
76.0300 101.1070 163.2860 N 0 0 0 0 0
|
| 17 |
+
77.3380 101.7040 163.2270 C 0 0 0 0 0
|
| 18 |
+
78.0740 101.1610 164.4330 C 0 0 0 0 0
|
| 19 |
+
78.2030 102.2490 165.4760 C 0 0 0 0 0
|
| 20 |
+
79.4580 100.6890 164.0530 C 0 0 0 0 0
|
| 21 |
+
74.9900 101.4140 162.4370 C 0 0 0 0 0
|
| 22 |
+
73.8350 101.0580 162.6400 O 0 0 0 0 0
|
| 23 |
+
75.3870 102.1560 161.3500 N 0 0 0 0 0
|
| 24 |
+
74.7040 102.0470 160.1560 C 0 0 0 0 0
|
| 25 |
+
74.6450 100.9520 159.2600 C 0 0 0 0 0
|
| 26 |
+
75.3000 99.6420 159.3680 C 0 0 0 0 0
|
| 27 |
+
73.8750 101.2310 158.2020 N 0 0 0 0 0
|
| 28 |
+
73.4180 102.5330 158.4030 O 0 0 0 0 0
|
| 29 |
+
73.9200 103.0140 159.5740 C 0 0 0 0 0
|
| 30 |
+
73.5430 104.3850 159.9520 C 0 0 0 0 0
|
| 31 |
+
79.1750 94.7640 164.9490 C 0 0 0 0 0
|
| 32 |
+
80.0290 95.1870 163.9000 O 0 0 0 0 0
|
| 33 |
+
79.2640 93.2730 165.1390 C 0 0 0 0 0
|
| 34 |
+
78.8120 92.7640 166.1540 O 0 0 0 0 0
|
| 35 |
+
79.8630 92.6270 164.0760 N 0 0 0 0 0
|
| 36 |
+
80.0080 91.1840 164.0450 C 0 0 0 0 0
|
| 37 |
+
80.8940 90.7620 162.8960 C 0 0 0 0 0
|
| 38 |
+
78.7020 90.4690 163.9270 C 0 0 0 0 0
|
| 39 |
+
78.5010 89.2980 164.6270 C 0 0 0 0 0
|
| 40 |
+
77.3040 88.6240 164.5300 C 0 0 0 0 0
|
| 41 |
+
76.2970 89.1200 163.7330 C 0 0 0 0 0
|
| 42 |
+
76.4930 90.2870 163.0320 C 0 0 0 0 0
|
| 43 |
+
77.6910 90.9590 163.1270 C 0 0 0 0 0
|
| 44 |
+
74.0875 92.5009 163.7465 H 0 0 0 0 0
|
| 45 |
+
72.9751 93.8911 163.7807 H 0 0 0 0 0
|
| 46 |
+
73.1884 92.9582 162.2790 H 0 0 0 0 0
|
| 47 |
+
74.4210 95.0829 162.1863 H 0 0 0 0 0
|
| 48 |
+
75.5291 93.6981 162.1522 H 0 0 0 0 0
|
| 49 |
+
75.0651 94.2909 164.8885 H 0 0 0 0 0
|
| 50 |
+
75.3597 95.8417 164.0815 H 0 0 0 0 0
|
| 51 |
+
77.3218 94.6726 162.9179 H 0 0 0 0 0
|
| 52 |
+
77.1085 93.3827 164.1460 H 0 0 0 0 0
|
| 53 |
+
77.2734 95.2091 165.8980 H 0 0 0 0 0
|
| 54 |
+
78.3008 96.7314 163.4782 H 0 0 0 0 0
|
| 55 |
+
77.2620 99.9440 166.0374 H 0 0 0 0 0
|
| 56 |
+
75.1895 100.7112 165.1728 H 0 0 0 0 0
|
| 57 |
+
75.3312 99.3262 164.1600 H 0 0 0 0 0
|
| 58 |
+
77.2853 102.7926 163.2435 H 0 0 0 0 0
|
| 59 |
+
77.8515 101.4586 162.2973 H 0 0 0 0 0
|
| 60 |
+
77.2125 102.6272 165.7291 H 0 0 0 0 0
|
| 61 |
+
78.6763 101.8404 166.3688 H 0 0 0 0 0
|
| 62 |
+
78.8127 103.0606 165.0790 H 0 0 0 0 0
|
| 63 |
+
79.9477 100.2616 164.9280 H 0 0 0 0 0
|
| 64 |
+
79.3808 99.9322 163.2723 H 0 0 0 0 0
|
| 65 |
+
80.0405 101.5339 163.6855 H 0 0 0 0 0
|
| 66 |
+
76.1854 102.7863 161.4260 H 0 0 0 0 0
|
| 67 |
+
76.3806 99.7795 159.4058 H 0 0 0 0 0
|
| 68 |
+
74.9640 99.1430 160.2770 H 0 0 0 0 0
|
| 69 |
+
75.0399 99.0346 158.5011 H 0 0 0 0 0
|
| 70 |
+
73.0197 104.3661 160.9080 H 0 0 0 0 0
|
| 71 |
+
74.4412 104.9962 160.0401 H 0 0 0 0 0
|
| 72 |
+
72.8898 104.8048 159.1870 H 0 0 0 0 0
|
| 73 |
+
79.5685 95.2686 165.8314 H 0 0 0 0 0
|
| 74 |
+
79.9579 96.1386 163.7950 H 0 0 0 0 0
|
| 75 |
+
80.2125 93.1785 163.2924 H 0 0 0 0 0
|
| 76 |
+
80.4599 90.9082 164.9978 H 0 0 0 0 0
|
| 77 |
+
80.4509 91.0929 161.9567 H 0 0 0 0 0
|
| 78 |
+
81.8790 91.2137 163.0135 H 0 0 0 0 0
|
| 79 |
+
80.9889 89.6761 162.8919 H 0 0 0 0 0
|
| 80 |
+
79.2948 88.9033 165.2612 H 0 0 0 0 0
|
| 81 |
+
77.1538 87.6976 165.0844 H 0 0 0 0 0
|
| 82 |
+
75.3477 88.5897 163.6578 H 0 0 0 0 0
|
| 83 |
+
75.6976 90.6810 162.3994 H 0 0 0 0 0
|
| 84 |
+
77.8411 91.8823 162.5675 H 0 0 0 0 0
|
| 85 |
+
1 2 1 0 0 0
|
| 86 |
+
2 3 1 0 0 0
|
| 87 |
+
3 4 1 0 0 0
|
| 88 |
+
4 5 1 0 0 0
|
| 89 |
+
5 6 1 0 0 0
|
| 90 |
+
5 27 1 0 0 0
|
| 91 |
+
6 7 1 0 0 0
|
| 92 |
+
7 8 2 0 0 0
|
| 93 |
+
7 9 1 0 0 0
|
| 94 |
+
9 10 1 0 0 0
|
| 95 |
+
10 11 1 0 0 0
|
| 96 |
+
10 14 1 0 0 0
|
| 97 |
+
11 12 1 0 0 0
|
| 98 |
+
12 13 1 0 0 0
|
| 99 |
+
12 17 1 0 0 0
|
| 100 |
+
13 14 1 0 0 0
|
| 101 |
+
14 15 1 0 0 0
|
| 102 |
+
14 16 1 0 0 0
|
| 103 |
+
17 18 2 0 0 0
|
| 104 |
+
17 19 1 0 0 0
|
| 105 |
+
19 20 1 0 0 0
|
| 106 |
+
20 21 4 0 0 0
|
| 107 |
+
20 25 4 0 0 0
|
| 108 |
+
21 22 1 0 0 0
|
| 109 |
+
21 23 4 0 0 0
|
| 110 |
+
23 24 4 0 0 0
|
| 111 |
+
24 25 4 0 0 0
|
| 112 |
+
25 26 1 0 0 0
|
| 113 |
+
27 28 1 0 0 0
|
| 114 |
+
27 29 1 0 0 0
|
| 115 |
+
29 30 2 0 0 0
|
| 116 |
+
29 31 1 0 0 0
|
| 117 |
+
31 32 1 0 0 0
|
| 118 |
+
32 33 1 0 0 0
|
| 119 |
+
32 34 1 0 0 0
|
| 120 |
+
34 35 4 0 0 0
|
| 121 |
+
34 39 4 0 0 0
|
| 122 |
+
35 36 4 0 0 0
|
| 123 |
+
36 37 4 0 0 0
|
| 124 |
+
37 38 4 0 0 0
|
| 125 |
+
38 39 4 0 0 0
|
| 126 |
+
1 40 1 0 0 0
|
| 127 |
+
1 41 1 0 0 0
|
| 128 |
+
1 42 1 0 0 0
|
| 129 |
+
2 43 1 0 0 0
|
| 130 |
+
2 44 1 0 0 0
|
| 131 |
+
3 45 1 0 0 0
|
| 132 |
+
3 46 1 0 0 0
|
| 133 |
+
4 47 1 0 0 0
|
| 134 |
+
4 48 1 0 0 0
|
| 135 |
+
5 49 1 0 0 0
|
| 136 |
+
6 50 1 0 0 0
|
| 137 |
+
10 51 1 0 0 0
|
| 138 |
+
11 52 1 0 0 0
|
| 139 |
+
11 53 1 0 0 0
|
| 140 |
+
13 54 1 0 0 0
|
| 141 |
+
13 55 1 0 0 0
|
| 142 |
+
15 56 1 0 0 0
|
| 143 |
+
15 57 1 0 0 0
|
| 144 |
+
15 58 1 0 0 0
|
| 145 |
+
16 59 1 0 0 0
|
| 146 |
+
16 60 1 0 0 0
|
| 147 |
+
16 61 1 0 0 0
|
| 148 |
+
19 62 1 0 0 0
|
| 149 |
+
22 63 1 0 0 0
|
| 150 |
+
22 64 1 0 0 0
|
| 151 |
+
22 65 1 0 0 0
|
| 152 |
+
26 66 1 0 0 0
|
| 153 |
+
26 67 1 0 0 0
|
| 154 |
+
26 68 1 0 0 0
|
| 155 |
+
27 69 1 0 0 0
|
| 156 |
+
28 70 1 0 0 0
|
| 157 |
+
31 71 1 0 0 0
|
| 158 |
+
32 72 1 0 0 0
|
| 159 |
+
33 73 1 0 0 0
|
| 160 |
+
33 74 1 0 0 0
|
| 161 |
+
33 75 1 0 0 0
|
| 162 |
+
35 76 1 0 0 0
|
| 163 |
+
36 77 1 0 0 0
|
| 164 |
+
37 78 1 0 0 0
|
| 165 |
+
38 79 1 0 0 0
|
| 166 |
+
39 80 1 0 0 0
|
| 167 |
+
M END
|
| 168 |
+
$$$$
|
2bdl/2bdl_protein_esmfold_aligned_tr_fix.pdb
ADDED
|
The diff for this file is too large to render.
See raw diff
|
|
|
2bdl/2bdl_protein_processed_fix.pdb
ADDED
|
The diff for this file is too large to render.
See raw diff
|
|
|
2bgd/2bgd_ligand.mol2
ADDED
|
@@ -0,0 +1,90 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
###
|
| 2 |
+
### Created by X-TOOL on Mon Sep 10 21:12:52 2018
|
| 3 |
+
###
|
| 4 |
+
|
| 5 |
+
@<TRIPOS>MOLECULE
|
| 6 |
+
2bgd_ligand
|
| 7 |
+
36 38 1 0 0
|
| 8 |
+
SMALL
|
| 9 |
+
GAST_HUCK
|
| 10 |
+
|
| 11 |
+
|
| 12 |
+
@<TRIPOS>ATOM
|
| 13 |
+
1 O -4.4220 58.9030 5.3260 O.2 1 T1D -0.3930
|
| 14 |
+
2 C -3.4820 59.6520 5.1790 C.2 1 T1D 0.2226
|
| 15 |
+
3 N -2.5700 59.9500 6.1100 N.am 1 T1D -0.1349
|
| 16 |
+
4 S -1.4680 60.9650 5.5480 S.o2 1 T1D 0.1634
|
| 17 |
+
5 O1 -0.0620 60.2920 5.4420 O.2 1 T1D -0.1249
|
| 18 |
+
6 O2 -1.4160 62.3040 6.3200 O.2 1 T1D -0.1249
|
| 19 |
+
7 N1 -2.0430 61.1680 4.1160 N.am 1 T1D -0.1410
|
| 20 |
+
8 C1 -3.2370 60.3670 3.8620 C.3 1 T1D 0.1454
|
| 21 |
+
9 C2 -1.4980 61.9590 3.0680 C.ar 1 T1D 0.1011
|
| 22 |
+
10 C3 -1.7970 63.3200 2.8900 C.ar 1 T1D -0.0451
|
| 23 |
+
11 C4 -1.2190 64.0460 1.8200 C.ar 1 T1D -0.0445
|
| 24 |
+
12 C5 -0.3720 63.3760 0.9220 C.ar 1 T1D -0.0789
|
| 25 |
+
13 C6 -0.0780 62.0220 1.0950 C.ar 1 T1D -0.0458
|
| 26 |
+
14 C7 -0.6420 61.3190 2.1700 C.ar 1 T1D 0.1105
|
| 27 |
+
15 O3 -0.3810 59.9920 2.3600 O.3 1 T1D -0.3274
|
| 28 |
+
16 C8 0.3260 59.1890 1.4010 C.3 1 T1D 0.0564
|
| 29 |
+
17 C9 -1.4800 65.4040 1.5810 C.ar 1 T1D -0.0289
|
| 30 |
+
18 C10 -2.6940 65.9740 1.9990 C.ar 1 T1D -0.0569
|
| 31 |
+
19 C11 -2.9850 67.3250 1.7420 C.ar 1 T1D -0.0629
|
| 32 |
+
20 C12 -2.0730 68.1090 1.0350 C.ar 1 T1D -0.0632
|
| 33 |
+
21 C13 -0.8570 67.5330 0.6020 C.ar 1 T1D -0.0629
|
| 34 |
+
22 C14 -0.5590 66.1920 0.8690 C.ar 1 T1D -0.0569
|
| 35 |
+
23 H1 -2.5758 59.5845 7.0408 H 1 T1D 0.2164
|
| 36 |
+
24 H2 -4.0909 61.0091 3.6002 H 1 T1D 0.0793
|
| 37 |
+
25 H3 -3.0590 59.6449 3.0515 H 1 T1D 0.0793
|
| 38 |
+
26 H4 -2.4738 63.8173 3.5753 H 1 T1D 0.0447
|
| 39 |
+
27 H5 0.0579 63.9157 0.0859 H 1 T1D 0.0460
|
| 40 |
+
28 H6 0.5836 61.5160 0.4012 H 1 T1D 0.0497
|
| 41 |
+
29 H7 0.4116 58.1589 1.7773 H 1 T1D 0.0573
|
| 42 |
+
30 H8 1.3314 59.6064 1.2433 H 1 T1D 0.0573
|
| 43 |
+
31 H9 -0.2237 59.1867 0.4482 H 1 T1D 0.0573
|
| 44 |
+
32 H10 -3.4169 65.3631 2.5274 H 1 T1D 0.0610
|
| 45 |
+
33 H11 -3.9157 67.7566 2.0923 H 1 T1D 0.0614
|
| 46 |
+
34 H12 -2.2944 69.1482 0.8201 H 1 T1D 0.0605
|
| 47 |
+
35 H13 -0.1443 68.1393 0.0547 H 1 T1D 0.0614
|
| 48 |
+
36 H14 0.3767 65.7633 0.5287 H 1 T1D 0.0610
|
| 49 |
+
@<TRIPOS>BOND
|
| 50 |
+
1 1 2 2
|
| 51 |
+
2 2 3 am
|
| 52 |
+
3 2 8 1
|
| 53 |
+
4 3 4 am
|
| 54 |
+
5 4 5 2
|
| 55 |
+
6 4 6 2
|
| 56 |
+
7 4 7 am
|
| 57 |
+
8 7 8 1
|
| 58 |
+
9 7 9 1
|
| 59 |
+
10 9 10 ar
|
| 60 |
+
11 9 14 ar
|
| 61 |
+
12 10 11 ar
|
| 62 |
+
13 11 12 ar
|
| 63 |
+
14 11 17 1
|
| 64 |
+
15 12 13 ar
|
| 65 |
+
16 13 14 ar
|
| 66 |
+
17 14 15 1
|
| 67 |
+
18 15 16 1
|
| 68 |
+
19 17 18 ar
|
| 69 |
+
20 17 22 ar
|
| 70 |
+
21 18 19 ar
|
| 71 |
+
22 19 20 ar
|
| 72 |
+
23 20 21 ar
|
| 73 |
+
24 21 22 ar
|
| 74 |
+
25 3 23 1
|
| 75 |
+
26 8 24 1
|
| 76 |
+
27 8 25 1
|
| 77 |
+
28 10 26 1
|
| 78 |
+
29 12 27 1
|
| 79 |
+
30 13 28 1
|
| 80 |
+
31 16 29 1
|
| 81 |
+
32 16 30 1
|
| 82 |
+
33 16 31 1
|
| 83 |
+
34 18 32 1
|
| 84 |
+
35 19 33 1
|
| 85 |
+
36 20 34 1
|
| 86 |
+
37 21 35 1
|
| 87 |
+
38 22 36 1
|
| 88 |
+
@<TRIPOS>SUBSTRUCTURE
|
| 89 |
+
1 T1D 1
|
| 90 |
+
|
2bgd/2bgd_ligand.sdf
ADDED
|
@@ -0,0 +1,80 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
2bgd_ligand
|
| 2 |
+
-I-interpret-
|
| 3 |
+
|
| 4 |
+
36 38 0 0 0 0 0 0 0 0999 V2000
|
| 5 |
+
-4.4220 58.9030 5.3260 O 0 0 0 0 0
|
| 6 |
+
-3.4820 59.6520 5.1790 C 0 0 0 0 0
|
| 7 |
+
-2.5700 59.9500 6.1100 N 0 0 0 0 0
|
| 8 |
+
-1.4680 60.9650 5.5480 S 0 0 0 0 0
|
| 9 |
+
-0.0620 60.2920 5.4420 O 0 0 0 0 0
|
| 10 |
+
-1.4160 62.3040 6.3200 O 0 0 0 0 0
|
| 11 |
+
-2.0430 61.1680 4.1160 N 0 0 0 0 0
|
| 12 |
+
-3.2370 60.3670 3.8620 C 0 0 0 0 0
|
| 13 |
+
-1.4980 61.9590 3.0680 C 0 0 0 0 0
|
| 14 |
+
-1.7970 63.3200 2.8900 C 0 0 0 0 0
|
| 15 |
+
-1.2190 64.0460 1.8200 C 0 0 0 0 0
|
| 16 |
+
-0.3720 63.3760 0.9220 C 0 0 0 0 0
|
| 17 |
+
-0.0780 62.0220 1.0950 C 0 0 0 0 0
|
| 18 |
+
-0.6420 61.3190 2.1700 C 0 0 0 0 0
|
| 19 |
+
-0.3810 59.9920 2.3600 O 0 0 0 0 0
|
| 20 |
+
0.3260 59.1890 1.4010 C 0 0 0 0 0
|
| 21 |
+
-1.4800 65.4040 1.5810 C 0 0 0 0 0
|
| 22 |
+
-2.6940 65.9740 1.9990 C 0 0 0 0 0
|
| 23 |
+
-2.9850 67.3250 1.7420 C 0 0 0 0 0
|
| 24 |
+
-2.0730 68.1090 1.0350 C 0 0 0 0 0
|
| 25 |
+
-0.8570 67.5330 0.6020 C 0 0 0 0 0
|
| 26 |
+
-0.5590 66.1920 0.8690 C 0 0 0 0 0
|
| 27 |
+
-2.5759 59.5772 7.0594 H 0 0 0 0 0
|
| 28 |
+
-4.0877 60.9763 3.5566 H 0 0 0 0 0
|
| 29 |
+
-3.1019 59.6730 3.0324 H 0 0 0 0 0
|
| 30 |
+
-2.4776 63.8201 3.5791 H 0 0 0 0 0
|
| 31 |
+
0.0603 63.9186 0.0813 H 0 0 0 0 0
|
| 32 |
+
0.5872 61.5132 0.3974 H 0 0 0 0 0
|
| 33 |
+
-0.2197 59.1876 0.4574 H 0 0 0 0 0
|
| 34 |
+
1.3220 59.6037 1.2456 H 0 0 0 0 0
|
| 35 |
+
0.4102 58.1686 1.7750 H 0 0 0 0 0
|
| 36 |
+
-3.4209 65.3597 2.5304 H 0 0 0 0 0
|
| 37 |
+
-3.9208 67.7589 2.0942 H 0 0 0 0 0
|
| 38 |
+
-2.2956 69.1539 0.8190 H 0 0 0 0 0
|
| 39 |
+
-0.1404 68.1427 0.0517 H 0 0 0 0 0
|
| 40 |
+
0.3819 65.7610 0.5268 H 0 0 0 0 0
|
| 41 |
+
1 2 2 0 0 0
|
| 42 |
+
2 3 1 0 0 0
|
| 43 |
+
2 8 1 0 0 0
|
| 44 |
+
3 4 1 0 0 0
|
| 45 |
+
4 5 2 0 0 0
|
| 46 |
+
4 6 2 0 0 0
|
| 47 |
+
4 7 1 0 0 0
|
| 48 |
+
7 8 1 0 0 0
|
| 49 |
+
7 9 1 0 0 0
|
| 50 |
+
9 10 4 0 0 0
|
| 51 |
+
9 14 4 0 0 0
|
| 52 |
+
10 11 4 0 0 0
|
| 53 |
+
11 12 4 0 0 0
|
| 54 |
+
11 17 1 0 0 0
|
| 55 |
+
12 13 4 0 0 0
|
| 56 |
+
13 14 4 0 0 0
|
| 57 |
+
14 15 1 0 0 0
|
| 58 |
+
15 16 1 0 0 0
|
| 59 |
+
17 18 4 0 0 0
|
| 60 |
+
17 22 4 0 0 0
|
| 61 |
+
18 19 4 0 0 0
|
| 62 |
+
19 20 4 0 0 0
|
| 63 |
+
20 21 4 0 0 0
|
| 64 |
+
21 22 4 0 0 0
|
| 65 |
+
3 23 1 0 0 0
|
| 66 |
+
8 24 1 0 0 0
|
| 67 |
+
8 25 1 0 0 0
|
| 68 |
+
10 26 1 0 0 0
|
| 69 |
+
12 27 1 0 0 0
|
| 70 |
+
13 28 1 0 0 0
|
| 71 |
+
16 29 1 0 0 0
|
| 72 |
+
16 30 1 0 0 0
|
| 73 |
+
16 31 1 0 0 0
|
| 74 |
+
18 32 1 0 0 0
|
| 75 |
+
19 33 1 0 0 0
|
| 76 |
+
20 34 1 0 0 0
|
| 77 |
+
21 35 1 0 0 0
|
| 78 |
+
22 36 1 0 0 0
|
| 79 |
+
M END
|
| 80 |
+
$$$$
|
2bgd/2bgd_protein_esmfold_aligned_tr_fix.pdb
ADDED
|
The diff for this file is too large to render.
See raw diff
|
|
|
2bgd/2bgd_protein_processed_fix.pdb
ADDED
|
The diff for this file is too large to render.
See raw diff
|
|
|
2gz8/2gz8_ligand.mol2
ADDED
|
@@ -0,0 +1,84 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
###
|
| 2 |
+
### Created by X-TOOL on Mon Sep 10 21:12:54 2018
|
| 3 |
+
###
|
| 4 |
+
|
| 5 |
+
@<TRIPOS>MOLECULE
|
| 6 |
+
2gz8_ligand
|
| 7 |
+
33 35 1 0 0
|
| 8 |
+
SMALL
|
| 9 |
+
GAST_HUCK
|
| 10 |
+
|
| 11 |
+
|
| 12 |
+
@<TRIPOS>ATOM
|
| 13 |
+
1 CAA -24.7560 -35.0310 5.5060 C.ar 1 F3F -0.0472
|
| 14 |
+
2 CAB -25.2490 -34.4890 6.7000 C.ar 1 F3F -0.0612
|
| 15 |
+
3 CAC -25.8940 -35.3120 7.6310 C.ar 1 F3F -0.0623
|
| 16 |
+
4 CAD -26.0460 -36.6780 7.3640 C.ar 1 F3F -0.0612
|
| 17 |
+
5 CAE -25.5570 -37.2210 6.1650 C.ar 1 F3F -0.0472
|
| 18 |
+
6 CAF -24.9120 -36.4010 5.2340 C.ar 1 F3F 0.0231
|
| 19 |
+
7 CAG -24.3950 -36.9560 4.0080 C.1 1 F3F -0.0620
|
| 20 |
+
8 CAH -23.9760 -37.5160 2.9550 C.1 1 F3F -0.0269
|
| 21 |
+
9 CAI -23.3130 -37.9580 1.7540 C.2 1 F3F 0.1714
|
| 22 |
+
10 OAM -22.2450 -38.8630 1.8760 O.3 1 F3F -0.2350
|
| 23 |
+
11 CAJ -23.4840 -37.6320 0.4720 C.2 1 F3F -0.0357
|
| 24 |
+
12 CAK -22.6020 -38.3260 -0.2710 C.2 1 F3F -0.0371
|
| 25 |
+
13 CAL -21.8780 -39.0890 0.5440 C.2 1 F3F 0.1855
|
| 26 |
+
14 CAN -20.7490 -40.0400 0.1400 C.2 1 F3F 0.2457
|
| 27 |
+
15 OAY -20.3180 -40.0490 -1.0160 O.2 1 F3F -0.3653
|
| 28 |
+
16 SAO -20.0150 -41.1560 1.3150 S.3 1 F3F 0.0954
|
| 29 |
+
17 CAP -20.9140 -42.5960 0.8640 C.2 1 F3F 0.2580
|
| 30 |
+
18 NAT -20.5730 -43.8360 1.1650 N.pl3 1 F3F -0.1983
|
| 31 |
+
19 CAS -21.5560 -44.5860 0.6630 C.2 1 F3F 0.2295
|
| 32 |
+
20 CAU -21.6240 -46.1000 0.8380 C.3 1 F3F 0.4148
|
| 33 |
+
21 FAW -22.3500 -46.7400 -0.0980 F 1 F3F -0.2245
|
| 34 |
+
22 FAX -20.3730 -46.5440 0.7750 F 1 F3F -0.2245
|
| 35 |
+
23 FAV -22.1450 -46.3600 2.0590 F 1 F3F -0.2245
|
| 36 |
+
24 NAR -22.4380 -43.7950 0.0590 N.2 1 F3F -0.1824
|
| 37 |
+
25 NAQ -22.0550 -42.6210 0.1760 N.2 1 F3F -0.1764
|
| 38 |
+
26 H1 -24.2527 -34.3918 4.7897 H 1 F3F 0.0625
|
| 39 |
+
27 H2 -25.1309 -33.4308 6.9034 H 1 F3F 0.0616
|
| 40 |
+
28 H3 -26.2745 -34.8930 8.5555 H 1 F3F 0.0613
|
| 41 |
+
29 H4 -26.5424 -37.3179 8.0846 H 1 F3F 0.0616
|
| 42 |
+
30 H5 -25.6798 -38.2785 5.9606 H 1 F3F 0.0625
|
| 43 |
+
31 H6 -24.2159 -36.9220 0.0898 H 1 F3F 0.0417
|
| 44 |
+
32 H7 -22.4986 -38.2723 -1.3538 H 1 F3F 0.0462
|
| 45 |
+
33 H8 -19.7354 -44.1533 1.6736 H 1 F3F 0.2509
|
| 46 |
+
@<TRIPOS>BOND
|
| 47 |
+
1 1 2 ar
|
| 48 |
+
2 1 6 ar
|
| 49 |
+
3 2 3 ar
|
| 50 |
+
4 3 4 ar
|
| 51 |
+
5 4 5 ar
|
| 52 |
+
6 5 6 ar
|
| 53 |
+
7 6 7 1
|
| 54 |
+
8 7 8 3
|
| 55 |
+
9 8 9 1
|
| 56 |
+
10 9 10 1
|
| 57 |
+
11 9 11 2
|
| 58 |
+
12 10 13 1
|
| 59 |
+
13 11 12 1
|
| 60 |
+
14 12 13 2
|
| 61 |
+
15 13 14 1
|
| 62 |
+
16 14 15 2
|
| 63 |
+
17 14 16 1
|
| 64 |
+
18 16 17 1
|
| 65 |
+
19 17 18 1
|
| 66 |
+
20 17 25 2
|
| 67 |
+
21 18 19 1
|
| 68 |
+
22 19 20 1
|
| 69 |
+
23 19 24 2
|
| 70 |
+
24 20 21 1
|
| 71 |
+
25 20 22 1
|
| 72 |
+
26 20 23 1
|
| 73 |
+
27 24 25 1
|
| 74 |
+
28 1 26 1
|
| 75 |
+
29 2 27 1
|
| 76 |
+
30 3 28 1
|
| 77 |
+
31 4 29 1
|
| 78 |
+
32 5 30 1
|
| 79 |
+
33 11 31 1
|
| 80 |
+
34 12 32 1
|
| 81 |
+
35 18 33 1
|
| 82 |
+
@<TRIPOS>SUBSTRUCTURE
|
| 83 |
+
1 F3F 1
|
| 84 |
+
|
2gz8/2gz8_ligand.sdf
ADDED
|
@@ -0,0 +1,72 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
2gz8_ligand
|
| 2 |
+
-I-interpret-
|
| 3 |
+
|
| 4 |
+
32 34 0 0 0 0 0 0 0 0999 V2000
|
| 5 |
+
-24.7560 -35.0310 5.5060 C 0 0 0 0 0
|
| 6 |
+
-25.2490 -34.4890 6.7000 C 0 0 0 0 0
|
| 7 |
+
-25.8940 -35.3120 7.6310 C 0 0 0 0 0
|
| 8 |
+
-26.0460 -36.6780 7.3640 C 0 0 0 0 0
|
| 9 |
+
-25.5570 -37.2210 6.1650 C 0 0 0 0 0
|
| 10 |
+
-24.9120 -36.4010 5.2340 C 0 0 0 0 0
|
| 11 |
+
-24.3950 -36.9560 4.0080 C 0 0 0 0 0
|
| 12 |
+
-23.9760 -37.5160 2.9550 C 0 0 0 0 0
|
| 13 |
+
-23.3130 -37.9580 1.7540 C 0 0 0 0 0
|
| 14 |
+
-22.2450 -38.8630 1.8760 O 0 0 0 0 0
|
| 15 |
+
-23.4840 -37.6320 0.4720 C 0 0 0 0 0
|
| 16 |
+
-22.6020 -38.3260 -0.2710 C 0 0 0 0 0
|
| 17 |
+
-21.8780 -39.0890 0.5440 C 0 0 0 0 0
|
| 18 |
+
-20.7490 -40.0400 0.1400 C 0 0 0 0 0
|
| 19 |
+
-20.3180 -40.0490 -1.0160 O 0 0 0 0 0
|
| 20 |
+
-20.0150 -41.1560 1.3150 S 0 0 0 0 0
|
| 21 |
+
-20.9140 -42.5960 0.8640 C 0 0 0 0 0
|
| 22 |
+
-20.5730 -43.8360 1.1650 N 0 0 0 0 0
|
| 23 |
+
-21.5560 -44.5860 0.6630 C 0 0 0 0 0
|
| 24 |
+
-21.6240 -46.1000 0.8380 C 0 0 0 0 0
|
| 25 |
+
-22.3500 -46.7400 -0.0980 F 0 0 0 0 0
|
| 26 |
+
-20.3730 -46.5440 0.7750 F 0 0 0 0 0
|
| 27 |
+
-22.1450 -46.3600 2.0590 F 0 0 0 0 0
|
| 28 |
+
-22.4380 -43.7950 0.0590 N 0 0 0 0 0
|
| 29 |
+
-22.0550 -42.6210 0.1760 N 0 0 0 0 0
|
| 30 |
+
-24.2499 -34.3882 4.7857 H 0 0 0 0 0
|
| 31 |
+
-25.1303 -33.4250 6.9045 H 0 0 0 0 0
|
| 32 |
+
-26.2766 -34.8907 8.5606 H 0 0 0 0 0
|
| 33 |
+
-26.5451 -37.3214 8.0886 H 0 0 0 0 0
|
| 34 |
+
-25.6805 -38.2843 5.9595 H 0 0 0 0 0
|
| 35 |
+
-24.2166 -36.9213 0.0894 H 0 0 0 0 0
|
| 36 |
+
-22.4985 -38.2722 -1.3547 H 0 0 0 0 0
|
| 37 |
+
1 2 4 0 0 0
|
| 38 |
+
1 6 4 0 0 0
|
| 39 |
+
2 3 4 0 0 0
|
| 40 |
+
3 4 4 0 0 0
|
| 41 |
+
4 5 4 0 0 0
|
| 42 |
+
5 6 4 0 0 0
|
| 43 |
+
6 7 1 0 0 0
|
| 44 |
+
7 8 3 0 0 0
|
| 45 |
+
8 9 1 0 0 0
|
| 46 |
+
9 10 4 0 0 0
|
| 47 |
+
9 11 4 0 0 0
|
| 48 |
+
10 13 4 0 0 0
|
| 49 |
+
11 12 4 0 0 0
|
| 50 |
+
12 13 4 0 0 0
|
| 51 |
+
13 14 1 0 0 0
|
| 52 |
+
14 15 2 0 0 0
|
| 53 |
+
14 16 1 0 0 0
|
| 54 |
+
16 17 1 0 0 0
|
| 55 |
+
17 18 4 0 0 0
|
| 56 |
+
17 25 4 0 0 0
|
| 57 |
+
18 19 4 0 0 0
|
| 58 |
+
19 20 1 0 0 0
|
| 59 |
+
19 24 4 0 0 0
|
| 60 |
+
20 21 1 0 0 0
|
| 61 |
+
20 22 1 0 0 0
|
| 62 |
+
20 23 1 0 0 0
|
| 63 |
+
24 25 4 0 0 0
|
| 64 |
+
1 26 1 0 0 0
|
| 65 |
+
2 27 1 0 0 0
|
| 66 |
+
3 28 1 0 0 0
|
| 67 |
+
4 29 1 0 0 0
|
| 68 |
+
5 30 1 0 0 0
|
| 69 |
+
11 31 1 0 0 0
|
| 70 |
+
12 32 1 0 0 0
|
| 71 |
+
M END
|
| 72 |
+
$$$$
|