Datasets:
Update dataset card with paper link, code, and task category
Browse filesHi! I'm Niels, part of the community science team at Hugging Face.
This PR improves the dataset card for TEDBench-AFDB by:
- Linking the dataset to the paper [Protein Fold Classification at Scale: Benchmarking and Pretraining](https://huggingface.co/papers/2605.18552).
- Adding a link to the official [GitHub repository](https://github.com/BorgwardtLab/TEDBench).
- Updating the `task_categories` to `graph-ml`.
This helps researchers find and cite your work more easily when browsing the Hub.
README.md
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---
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license: bsd-3-clause
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task_categories:
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task_ids:
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- other
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language:
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- en
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tags:
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- protein
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- structure
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- pretraining
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- tedbench
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- alphafold
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- foldseek
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pretty_name: TEDBench-AFDB (pretraining)
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---
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# TEDBench-AFDB (pretraining corpus)
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(ICML 2026).
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## Dataset statistics
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# Multi-GPU (effective batch size 4096)
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python main_pretrain.py \
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experiment=tedbench_base_n4g8
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datamodule=hf_afdbfs
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```
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## Source data
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- [Foldseek](https://afdb-cluster.steineggerlab.workers.dev) cluster representatives
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from AlphaFold Database v4 (pLDDT > 80)
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## Citation
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## License
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BSD-3-Clause
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language:
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- en
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license: bsd-3-clause
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size_categories:
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- 100K<n<10M
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task_categories:
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- graph-ml
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pretty_name: TEDBench-AFDB (pretraining)
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tags:
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- protein
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- structure
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- pretraining
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- tedbench
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- alphafold
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- foldseek
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---
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# TEDBench-AFDB (pretraining corpus)
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[**Paper**](https://huggingface.co/papers/2605.18552) | [**GitHub**](https://github.com/BorgwardtLab/TEDBench)
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Representative proteins from Foldseek-clustered AlphaFold Database (pLDDT > 80), used to pretrain **MiAE (Masked Invariant Autoencoders)** in the **TEDBench** benchmark.
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TEDBench is a large-scale, non-redundant benchmark for protein fold classification constructed from the Encyclopedia of Domains (TED) and Foldseek-clustered AlphaFold structures.
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## Dataset statistics
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# Multi-GPU (effective batch size 4096)
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python main_pretrain.py \
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experiment=tedbench_base_n4g8 \
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datamodule=hf_afdbfs
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```
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## Source data
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- [Foldseek](https://afdb-cluster.steineggerlab.workers.dev) cluster representatives from AlphaFold Database v4 (pLDDT > 80)
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## Citation
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## License
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BSD-3-Clause
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