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Set current keyring backend.
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Run a program and check program return code Note that some commands don't work well with Popen. So if this function is specifically called with 'shell=True', then it will run the old 'os.system'. In which case, there is no program output
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Get the creation date of the repository from GitHub. :rtype: str, str :return: special tag name, creation date as ISO date string
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Follow a set of angle data, yielding dynamic joint torques. Parameters ---------- angles : ndarray (num-frames x num-dofs) Follow angle data provided by this array of angle values. start : int, optional Start following angle data after this frame. Defaults to the...
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Uses glob to find all files or folders that match the regex starting from the base_directory. Parameters ---------- base_directory: str regex: str Returns ------- files: list
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A PointValue was received from the Master. Process its payload. :param command_type: (string) Either 'Select' or 'Operate'. :param command: A ControlRelayOutputBlock or else a wrapped data value (AnalogOutputInt16, etc.). :param index: (integer) DNP3 index of the payload's data definition. ...
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Add foreground and background colours to a color scheme
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Map a 1D array the same dimension as the grid to its original masked 2D array. Parameters ----------- array_1d : ndarray The 1D array which is mapped to its masked 2D array.
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Connect to FTP server, login and return an ftplib.FTP instance.
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normalize raw logical plan info to table
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Unpickle a possible compressed pickle. Parameters ---------- path: str path to the output file compression: bool if true assumes that pickle was compressed when created and attempts decompression. Returns ------- obj: object the unpickled object
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Get stdout for a particular task. Args: workflow_id (str): Workflow id. task_id (str): Task id. Returns: Stdout of the task (string).
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Return a sequence of matching rows with the requested field values from a table or empty sequence if nothing matched. tableInfo: Table information: a ClientJobsDAO._TableInfoBase instance conn: Owned connection acquired from ConnectionFactory.get() fieldsToMatch: Dictionary of inter...
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Create a complete copy of the stream. :returns: A new MaterialStream object.
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Create directories if they do not exist, otherwise do nothing. Return path for convenience
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Determine the mass flow rate of the specified elements in the stream. :returns: Mass flow rates. [kg/h]
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Return random characters.
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We use logging's levels as an easy-to-use verbosity controller.
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Determine whether the model of the instance is an NDB model. Returns: Boolean indicating whether or not the model is an NDB or DB model.
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Convert clip operation. Args: params: dictionary with layer parameters w_name: name prefix in state_dict scope_name: pytorch scope name inputs: pytorch node inputs layers: dictionary with keras tensors weights: pytorch state_dict names: use short names for ke...
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Adds line breaks after every occurance of a given character in a file. Args: f: string, path to input file. output: string, path to output file. Returns: None.
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A context manager to temporarily set the training mode of 'model' to 'mode', resetting it when we exit the with-block. A no-op if mode is None.
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Fit KimCNNClassifier according to X, y Parameters ---------- X : list of string each item is a raw text y : list of string each item is a label
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Attempt to copy ``path`` with storage
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Calculate the scores over all biological processes in the sub-graph. As an implementation, it simply computes the sub-graphs then calls :func:`calculate_average_scores_on_subgraphs` as described in that function's documentation. :param graph: A BEL graph with heats already on the nodes :param key: The...
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Read a block and return the result as XML :return: block as xml :rtype: xml.etree.ElementTree
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Implements the 'merge' operator for merging lists.
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Updates a URI with new query parameters. If a given key from ``params`` is repeated in the ``uri``, then the URI will be considered invalid and an error will occur. If the URI is valid, then each value from ``params`` will replace the corresponding value in the query parameters (if it exists). ...
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r""" Covariance of the estimated posteriori.
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Get path of specified image. Parameters ---------- well_row : int Starts at 0. Same as --U in files. well_column : int Starts at 0. Same as --V in files. field_row : int Starts at 0. Same as --Y in files. field_column : int ...
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A fast j2 defined in terms of other special functions
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Fetches Instance jstack from heron-shell.
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Return a Unix timestamp in milliseconds for the provided datetime. The `totz` function is called on the datetime to convert it to the provided timezone. It will be converted to UTC if no timezone is provided.
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Returns a string representing a numpy array of 0's and 1's
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Assign the given parameters to the TensorLayer network. Parameters ---------- sess : Session TensorFlow Session. params : list of array A list of parameters (array) in order. network : :class:`Layer` The network to be assigned. Returns -------- list of operation...
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Count the number of elements created, modified and deleted by the changeset and analyses if it is a possible import, mass modification or a mass deletion.
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The minimum and maximum bounds of this layout. :return: ``(min_x, min_y, max_x, max_y)`` the bounding box of this layout :rtype: tuple
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Swish function. See `Swish: a Self-Gated Activation Function <https://arxiv.org/abs/1710.05941>`__. Parameters ---------- x : Tensor input. name: str function name (optional). Returns ------- Tensor A ``Tensor`` in the same type as ``x``.
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Return the title of the content item.
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Update metadata with the content of the files
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convert compiled ast to gene_reaction_rule str Parameters ---------- expr : str string for a gene reaction rule, e.g "a and b" level : int internal use only names : dict Dict where each element id a gene identifier and the value is the gene name. Use this to get a ru...
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Sort elements of multiple types x is assumed to contain elements of different types, such that plain sort would raise a `TypeError`. Parameters ---------- a : array-like Array of items to be sorted Returns ------- out : list Items sorted within their type groups.
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Return the NCD between two strings using BWT plus RLE. Parameters ---------- src : str Source string for comparison tar : str Target string for comparison Returns ------- float Compression distance Examples --...
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Our exports file will be invalid if this folder doesn't exist, and the NFS server will not run correctly.
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Convert lsstdoc-class LaTeX to another markup format. This function is a thin wrapper around `convert_text` that automatically includes common lsstdoc LaTeX macros. Parameters ---------- content : `str` Original content. to_fmt : `str` Output format for the content (see https:...
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Manage a database connection.
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Feed in an essay set to get feature vector and classifier essays must be an essay set object additional array is an optional argument that can specify a numpy array of values to add in returns a trained FeatureExtractor object and a trained classifier
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Picks only a coda from a decimal.
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Factory for GromacsCommand derived types.
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Return a list of cross references.
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Normalize `path`. All remote paths are absolute.
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Saves a component of this model to the designated location. Args: component_name: The component to save. save_path: The location to save to. Returns: Checkpoint path where the component was saved.
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Generates a DSA signature :param private_key: The PrivateKey to generate the signature with :param data: A byte string of the data the signature is for :param hash_algorithm: A unicode string of "md5", "sha1", "sha256", "sha384" or "sha512" :raises: ValueError - when ...
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Collect statistics for each of the fields in the user input data file and return a stats dict object. Parameters: ------------------------------------------------------------------------------ filename: The path and name of the data file. maxSamples: Upper bound on the number of rows to...
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Add a Condor DAG job to the Condor DAG associated with this Batchmake task :param token: A valid token for the user in question. :type token: string :param batchmaketaskid: id of the Batchmake task for this DAG :type batchmaketaskid: int | long :param jobdefinitionfilena...
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Export model and transformers to export_folder Parameters ---------- model_name: string name of model to export export_folder: string folder to store exported model and transformers
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Clear only drafts. Status required: ``'draft'``. Meta information inside `_deposit` are preserved.
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Plotting wrapper for pitch contours
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Return a JSON string representation of a Python data structure. >>> JSONEncoder().encode({"foo": ["bar", "baz"]}) '{"foo": ["bar", "baz"]}'
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Derive new private key from this key and a sha256 "offset"
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Replace this observation's data with a fresh container. Returns ------- annotation_data : SortedKeyList The original annotation data container
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Return true iff checkpointDir appears to be a checkpoint directory.
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Convert hangouts_pb2.ParticipantId to UserID.
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Freehand sketching.
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Get a user by the email of that user. :param email: The email of the desired user. :type email: string :returns: The user requested. :rtype: dict
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Convert positions to percentages if necessary, and change them to long format. Parameters ---------- positions: pd.DataFrame Daily holdings (in dollars or percentages), indexed by date. Will be converted to percentages if positions are in dollars. Short positions show up as cash...
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Create Flask application class. Invenio-Files-REST needs to patch the Werkzeug form parsing in order to support streaming large file uploads. This is done by subclassing the Flask application class.
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Write composite object to file handle in JSON format. Args: fh (file): File handle to write to. pretty (bool): Sort keys and indent in output.
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Graph background color.
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Extract metadata Dimension Info from an xml node
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Full adder. Args: variables (list): Variable labels for the and gate as `[in1, in2, in3, sum, carry]`, where `in1, in2, in3` are inputs to be added and `sum` and 'carry' the resultant outputs. vartype (Vartype, optional, default='BINARY'): Variable type. Accepted ...
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Plot a grid of points over the array of data on the figure. Parameters -----------. grid_arcsec : ndarray or data.array.grids.RegularGrid A grid of (y,x) coordinates in arc-seconds which may be plotted over the array. array : data.array.scaled_array.ScaledArray The 2D array of data...
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Perform standard handling of an exception that occurs while running a model. Parameters: ------------------------------------------------------------------------- jobID: ID for this hypersearch job in the jobs table modelID: model ID jobsDAO: ClientJobsDAO instance ...
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Check patterns in order, last match that includes or excludes `path` wins. Return `None` on undecided.
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Uploads a file on the server to the desired location :param filename: the name of the file to be uploaded. :type filename: string :param location: the directory in which the file will be stored. :type location: string
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Returns the configured DNS servers with the use f nmcli.
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Tests all the intents against the query and returns match data of the best intent Args: query (str): Input sentence to test against intents Returns: MatchData: Best intent match
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Flag those C++14 features that we restrict. Args: filename: The name of the current file. clean_lines: A CleansedLines instance containing the file. linenum: The number of the line to check. error: The function to call with any errors found.
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Clean up resources used by the session.
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Wrapper for _log_counter_per_token. Args: token: The token for which to look up the count. Returns: The number of times this function has been called with *token* as an argument (starting at 0)
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Writes the given chunk to the output buffer. @param[in] chunk Either a byte array, a unicode string, or a generator. If `chunk` is a generator then calling `self.write(<generator>)` is equivalent to: @code for x in <generator>: ...
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Run ``gromacs.grompp`` and return the total charge of the system. :Arguments: The arguments are the ones one would pass to :func:`gromacs.grompp`. :Returns: The total charge as reported Some things to keep in mind: * The stdout output of grompp is only shown when an error occurs. For ...
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Returns a parse tree for the query, each of the node is a subclass of Operator. This is both a lexical as well as syntax analyzer step.
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r'''Method to solve for the temperature at which a property is at a specified value. `T_dependent_property` is used to calculate the value of the property as a function of temperature; if `reset_method` is True, the best method is used at each temperature as the solver seeks a solution. ...
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Return namespace-prefixed tag or attribute name. Add appropriate declaration to `declarations` when neccessary. If no prefix for an element namespace is defined, make the elements namespace default (no prefix). For attributes, make up a prefix in such case. :Parameters: ...
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Shape of preprocessed state given original shape. Args: shape: original state shape Returns: processed state shape
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Provides a transacted cursor which will run in autocommit=false mode For any exception the transaction will be rolled back. Requires that the function being decorated is an instance of a class or object that yields a cursor from a get_cursor(cursor_type=CursorType.NAMEDTUPLE) coroutine or provides such an ...
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Checks that the new block is directly in a namespace. Args: nesting_state: The _NestingState object that contains info about our state. is_forward_declaration: If the class is a forward declared class. Returns: Whether or not the new block is directly in a namespace.
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Obtain account name from private key
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Make a session.
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Implements the '<=' operator with JS-style type coertion.
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Find the external compartment in the model. Uses a simple heuristic where the external compartment should be the one with the most exchange reactions. Arguments --------- model : cobra.Model A cobra model. Returns ------- str The putative external compartment.
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This will output the nginx location config string for specific port spec
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Update the `dst` with the `src`, extending values where lists. Primiarily useful for integrating results from `get_library_config`.
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Given model params, figure out the correct parameters for the RandomDistributed encoder. Modifies params in place.
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Called when current stream changes. Mark the room not joined and inform `self.handler` that it was left. :Parameters: - `stream`: the new stream. :Types: - `stream`: `pyxmpp.stream.Stream`
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Set a devices state.
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Upload a function to AWS S3.
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Write to a local log file
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build a directed acyclic graph describing jobs to be run in order.