| 1. Please load the Martini coarse-grained simulation file from "curved-membrane/data/curved-membrane.". | |
| 2. Use VMD to show a zoomed in view of the membrane side coloring the water blue and the lipid phosphate (PO4 beads) red, and take a screenshot. | |
| 3. Analyze the visualization and answer the following questions: | |
| Q1: Is there any water that penetrates into the membrane phase? (yes/no) | |
| 4. Save your work: | |
| Save the VMD state as "curved-membrane/results/{agent_mode}/curved-membrane.vmd". | |
| Save the screenshot of the visualization as "curved-membrane/results/{agent_mode}/curved-membrane.png". | |
| Save the answers to the analysis questions in plain text as "curved-membrane/results/{agent_mode}/answers.txt". |