KuangshiAi
Remove napari_mcp_evals folder and add bioimage_data folder with Git LFS
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Task:
Load the Head MRT Angiography dataset from "mrt_angio/data/mrt_angio_416x512x112_uint16.raw", the information about this dataset:
Head MRT Angiography
Description: 3T MRT Time-of-Flight Angiography dataset of a human head. The dataset has been resampled into an isotropic voxel grid (hence the peculiar slice size).
Data Type: uint16
Data Byte Order: little Endian
Data Spacing: 0.412x0.412x0.412
Data Extent: 416x512x112
Data loading is very important, make sure you correctly load the dataset according to their features.
Visualize the blood vessels using:
1. Apply volume rendering with a transfer function that highlights the contrast-enhanced vessels
2. Use a red-to-white color map for blood vessels
3. Extract an isosurface at a value that clearly shows the aneurism or vessel structure (experiment with values around 100-150)
4. Adjust opacity to make internal structures visible (opacity around 0.6-0.8 for vessels)
Please think step by step and make sure to fulfill all the visualization goals mentioned above.
Finally, save the paraview state as "mrt_angio/results/mrt_angio.pvsm"