| #!/usr/local/bin/vmd | |
| # VMD script written by save_state $Revision: 1.48 $ | |
| # VMD version: 1.9.4a57 | |
| set viewplist {} | |
| set fixedlist {} | |
| proc vmdrestoremymaterials {} { | |
| set mlist { Opaque Transparent BrushedMetal Diffuse Ghost Glass1 Glass2 Glass3 Glossy HardPlastic MetallicPastel Steel Translucent Edgy EdgyShiny EdgyGlass Goodsell AOShiny AOChalky AOEdgy BlownGlass GlassBubble RTChrome } | |
| set mymlist [material list] | |
| foreach mat $mlist { | |
| if { [lsearch $mymlist $mat] == -1 } { | |
| material add $mat | |
| } | |
| } | |
| material change ambient Opaque 0.000000 | |
| material change diffuse Opaque 0.650000 | |
| material change specular Opaque 0.500000 | |
| material change shininess Opaque 0.534020 | |
| material change mirror Opaque 0.000000 | |
| material change opacity Opaque 1.000000 | |
| material change outline Opaque 0.000000 | |
| material change outlinewidth Opaque 0.000000 | |
| material change transmode Opaque 0.000000 | |
| material change ambient Transparent 0.000000 | |
| material change diffuse Transparent 0.650000 | |
| material change specular Transparent 0.500000 | |
| material change shininess Transparent 0.534020 | |
| material change mirror Transparent 0.000000 | |
| material change opacity Transparent 0.300000 | |
| material change outline Transparent 0.000000 | |
| material change outlinewidth Transparent 0.000000 | |
| material change transmode Transparent 0.000000 | |
| material change ambient BrushedMetal 0.080000 | |
| material change diffuse BrushedMetal 0.390000 | |
| material change specular BrushedMetal 0.340000 | |
| material change shininess BrushedMetal 0.150000 | |
| material change mirror BrushedMetal 0.000000 | |
| material change opacity BrushedMetal 1.000000 | |
| material change outline BrushedMetal 0.000000 | |
| material change outlinewidth BrushedMetal 0.000000 | |
| material change transmode BrushedMetal 0.000000 | |
| material change ambient Diffuse 0.000000 | |
| material change diffuse Diffuse 0.620000 | |
| material change specular Diffuse 0.000000 | |
| material change shininess Diffuse 0.530000 | |
| material change mirror Diffuse 0.000000 | |
| material change opacity Diffuse 1.000000 | |
| material change outline Diffuse 0.000000 | |
| material change outlinewidth Diffuse 0.000000 | |
| material change transmode Diffuse 0.000000 | |
| material change ambient Ghost 0.000000 | |
| material change diffuse Ghost 0.000000 | |
| material change specular Ghost 1.000000 | |
| material change shininess Ghost 0.230000 | |
| material change mirror Ghost 0.000000 | |
| material change opacity Ghost 0.100000 | |
| material change outline Ghost 0.000000 | |
| material change outlinewidth Ghost 0.000000 | |
| material change transmode Ghost 0.000000 | |
| material change ambient Glass1 0.000000 | |
| material change diffuse Glass1 0.500000 | |
| material change specular Glass1 0.650000 | |
| material change shininess Glass1 0.530000 | |
| material change mirror Glass1 0.000000 | |
| material change opacity Glass1 0.150000 | |
| material change outline Glass1 0.000000 | |
| material change outlinewidth Glass1 0.000000 | |
| material change transmode Glass1 0.000000 | |
| material change ambient Glass2 0.520000 | |
| material change diffuse Glass2 0.760000 | |
| material change specular Glass2 0.220000 | |
| material change shininess Glass2 0.590000 | |
| material change mirror Glass2 0.000000 | |
| material change opacity Glass2 0.680000 | |
| material change outline Glass2 0.000000 | |
| material change outlinewidth Glass2 0.000000 | |
| material change transmode Glass2 0.000000 | |
| material change ambient Glass3 0.150000 | |
| material change diffuse Glass3 0.250000 | |
| material change specular Glass3 0.750000 | |
| material change shininess Glass3 0.800000 | |
| material change mirror Glass3 0.000000 | |
| material change opacity Glass3 0.500000 | |
| material change outline Glass3 0.000000 | |
| material change outlinewidth Glass3 0.000000 | |
| material change transmode Glass3 0.000000 | |
| material change ambient Glossy 0.000000 | |
| material change diffuse Glossy 0.650000 | |
| material change specular Glossy 1.000000 | |
| material change shininess Glossy 0.880000 | |
| material change mirror Glossy 0.000000 | |
| material change opacity Glossy 1.000000 | |
| material change outline Glossy 0.000000 | |
| material change outlinewidth Glossy 0.000000 | |
| material change transmode Glossy 0.000000 | |
| material change ambient HardPlastic 0.000000 | |
| material change diffuse HardPlastic 0.560000 | |
| material change specular HardPlastic 0.280000 | |
| material change shininess HardPlastic 0.690000 | |
| material change mirror HardPlastic 0.000000 | |
| material change opacity HardPlastic 1.000000 | |
| material change outline HardPlastic 0.000000 | |
| material change outlinewidth HardPlastic 0.000000 | |
| material change transmode HardPlastic 0.000000 | |
| material change ambient MetallicPastel 0.000000 | |
| material change diffuse MetallicPastel 0.260000 | |
| material change specular MetallicPastel 0.550000 | |
| material change shininess MetallicPastel 0.190000 | |
| material change mirror MetallicPastel 0.000000 | |
| material change opacity MetallicPastel 1.000000 | |
| material change outline MetallicPastel 0.000000 | |
| material change outlinewidth MetallicPastel 0.000000 | |
| material change transmode MetallicPastel 0.000000 | |
| material change ambient Steel 0.250000 | |
| material change diffuse Steel 0.000000 | |
| material change specular Steel 0.380000 | |
| material change shininess Steel 0.320000 | |
| material change mirror Steel 0.000000 | |
| material change opacity Steel 1.000000 | |
| material change outline Steel 0.000000 | |
| material change outlinewidth Steel 0.000000 | |
| material change transmode Steel 0.000000 | |
| material change ambient Translucent 0.000000 | |
| material change diffuse Translucent 0.700000 | |
| material change specular Translucent 0.600000 | |
| material change shininess Translucent 0.300000 | |
| material change mirror Translucent 0.000000 | |
| material change opacity Translucent 0.800000 | |
| material change outline Translucent 0.000000 | |
| material change outlinewidth Translucent 0.000000 | |
| material change transmode Translucent 0.000000 | |
| material change ambient Edgy 0.000000 | |
| material change diffuse Edgy 0.660000 | |
| material change specular Edgy 0.000000 | |
| material change shininess Edgy 0.750000 | |
| material change mirror Edgy 0.000000 | |
| material change opacity Edgy 1.000000 | |
| material change outline Edgy 0.620000 | |
| material change outlinewidth Edgy 0.940000 | |
| material change transmode Edgy 0.000000 | |
| material change ambient EdgyShiny 0.000000 | |
| material change diffuse EdgyShiny 0.660000 | |
| material change specular EdgyShiny 0.960000 | |
| material change shininess EdgyShiny 0.750000 | |
| material change mirror EdgyShiny 0.000000 | |
| material change opacity EdgyShiny 1.000000 | |
| material change outline EdgyShiny 0.760000 | |
| material change outlinewidth EdgyShiny 0.940000 | |
| material change transmode EdgyShiny 0.000000 | |
| material change ambient EdgyGlass 0.000000 | |
| material change diffuse EdgyGlass 0.660000 | |
| material change specular EdgyGlass 0.500000 | |
| material change shininess EdgyGlass 0.750000 | |
| material change mirror EdgyGlass 0.000000 | |
| material change opacity EdgyGlass 0.620000 | |
| material change outline EdgyGlass 0.620000 | |
| material change outlinewidth EdgyGlass 0.940000 | |
| material change transmode EdgyGlass 0.000000 | |
| material change ambient Goodsell 0.520000 | |
| material change diffuse Goodsell 1.000000 | |
| material change specular Goodsell 0.000000 | |
| material change shininess Goodsell -0.000000 | |
| material change mirror Goodsell 0.000000 | |
| material change opacity Goodsell 1.000000 | |
| material change outline Goodsell 4.000000 | |
| material change outlinewidth Goodsell 0.900000 | |
| material change transmode Goodsell 0.000000 | |
| material change ambient AOShiny 0.000000 | |
| material change diffuse AOShiny 0.850000 | |
| material change specular AOShiny 0.200000 | |
| material change shininess AOShiny 0.530000 | |
| material change mirror AOShiny 0.000000 | |
| material change opacity AOShiny 1.000000 | |
| material change outline AOShiny 0.000000 | |
| material change outlinewidth AOShiny 0.000000 | |
| material change transmode AOShiny 0.000000 | |
| material change ambient AOChalky 0.000000 | |
| material change diffuse AOChalky 0.850000 | |
| material change specular AOChalky 0.000000 | |
| material change shininess AOChalky 0.530000 | |
| material change mirror AOChalky 0.000000 | |
| material change opacity AOChalky 1.000000 | |
| material change outline AOChalky 0.000000 | |
| material change outlinewidth AOChalky 0.000000 | |
| material change transmode AOChalky 0.000000 | |
| material change ambient AOEdgy 0.000000 | |
| material change diffuse AOEdgy 0.900000 | |
| material change specular AOEdgy 0.200000 | |
| material change shininess AOEdgy 0.530000 | |
| material change mirror AOEdgy 0.000000 | |
| material change opacity AOEdgy 1.000000 | |
| material change outline AOEdgy 0.620000 | |
| material change outlinewidth AOEdgy 0.930000 | |
| material change transmode AOEdgy 0.000000 | |
| material change ambient BlownGlass 0.040000 | |
| material change diffuse BlownGlass 0.340000 | |
| material change specular BlownGlass 1.000000 | |
| material change shininess BlownGlass 1.000000 | |
| material change mirror BlownGlass 0.000000 | |
| material change opacity BlownGlass 0.100000 | |
| material change outline BlownGlass 0.000000 | |
| material change outlinewidth BlownGlass 0.000000 | |
| material change transmode BlownGlass 1.000000 | |
| material change ambient GlassBubble 0.250000 | |
| material change diffuse GlassBubble 0.340000 | |
| material change specular GlassBubble 1.000000 | |
| material change shininess GlassBubble 1.000000 | |
| material change mirror GlassBubble 0.000000 | |
| material change opacity GlassBubble 0.040000 | |
| material change outline GlassBubble 0.000000 | |
| material change outlinewidth GlassBubble 0.000000 | |
| material change transmode GlassBubble 1.000000 | |
| material change ambient RTChrome 0.000000 | |
| material change diffuse RTChrome 0.650000 | |
| material change specular RTChrome 0.500000 | |
| material change shininess RTChrome 0.530000 | |
| material change mirror RTChrome 0.700000 | |
| material change opacity RTChrome 1.000000 | |
| material change outline RTChrome 0.000000 | |
| material change outlinewidth RTChrome 0.000000 | |
| material change transmode RTChrome 0.000000 | |
| } | |
| vmdrestoremymaterials | |
| # Atom selection macros | |
| atomselect macro at {resname ADE A THY T} | |
| atomselect macro acidic {resname ASP GLU} | |
| atomselect macro cyclic {resname HIS PHE PRO TRP TYR} | |
| atomselect macro acyclic {protein and not cyclic} | |
| atomselect macro aliphatic {resname ALA GLY ILE LEU VAL} | |
| atomselect macro alpha {protein and name CA} | |
| atomselect macro amino protein | |
| atomselect macro aromatic {resname HIS PHE TRP TYR} | |
| atomselect macro basic {resname ARG HIS LYS HSP} | |
| atomselect macro bonded {numbonds > 0} | |
| atomselect macro buried {resname ALA LEU VAL ILE PHE CYS MET TRP} | |
| atomselect macro cg {resname CYT C GUA G} | |
| atomselect macro charged {basic or acidic} | |
| atomselect macro hetero {not (protein or nucleic)} | |
| atomselect macro hydrophobic {resname ALA LEU VAL ILE PRO PHE MET TRP} | |
| atomselect macro small {resname ALA GLY SER} | |
| atomselect macro medium {resname VAL THR ASP ASN PRO CYS ASX PCA HYP} | |
| atomselect macro large {protein and not (small or medium)} | |
| atomselect macro neutral {resname VAL PHE GLN TYR HIS CYS MET TRP ASX GLX PCA HYP} | |
| atomselect macro polar {protein and not hydrophobic} | |
| atomselect macro purine {resname ADE A GUA G} | |
| atomselect macro pyrimidine {resname CYT C THY T URA U} | |
| atomselect macro surface {protein and not buried} | |
| atomselect macro lipid {resname DLPE DMPC DPPC GPC LPPC PALM PC PGCL POPC POPE} | |
| atomselect macro lipids lipid | |
| atomselect macro ion {resname AL BA CA CAL CD CES CLA CL CO CS CU CU1 CUA HG IN IOD K LIT MG MN3 MO3 MO4 MO5 MO6 NA NAW OC7 PB POT PT RB SOD TB TL WO4 YB ZN ZN1 ZN2} | |
| atomselect macro ions ion | |
| atomselect macro sugar {resname AGLC} | |
| atomselect macro solvent {not (protein or sugar or nucleic or lipid)} | |
| atomselect macro glycan {resname NAG BGLN FUC AFUC MAN AMAN BMA BMAN} | |
| atomselect macro carbon {name "C.*" and not ion} | |
| atomselect macro hydrogen {name "[0-9]?H.*"} | |
| atomselect macro nitrogen {name "N.*"} | |
| atomselect macro oxygen {name "O.*"} | |
| atomselect macro sulfur {name "S.*" and not ion} | |
| atomselect macro noh {not hydrogen} | |
| atomselect macro heme {resname HEM HEME} | |
| atomselect macro conformationall {altloc ""} | |
| atomselect macro conformationA {altloc "" or altloc "A"} | |
| atomselect macro conformationB {altloc "" or altloc "B"} | |
| atomselect macro conformationC {altloc "" or altloc "C"} | |
| atomselect macro conformationD {altloc "" or altloc "D"} | |
| atomselect macro conformationE {altloc "" or altloc "E"} | |
| atomselect macro conformationF {altloc "" or altloc "F"} | |
| atomselect macro drude {type DRUD or type LP} | |
| atomselect macro unparametrized beta<1 | |
| atomselect macro addedmolefacture {occupancy 0.8} | |
| atomselect macro qwikmd_protein {(not name QWIKMDDELETE and protein)} | |
| atomselect macro qwikmd_nucleic {(not name QWIKMDDELETE and nucleic)} | |
| atomselect macro qwikmd_glycan {(not name QWIKMDDELETE and glycan)} | |
| atomselect macro qwikmd_lipid {(not name QWIKMDDELETE and lipid)} | |
| atomselect macro qwikmd_hetero {(not name QWIKMDDELETE and hetero and not qwikmd_protein and not qwikmd_lipid and not qwikmd_nucleic and not qwikmd_glycan and not water)} | |
| # Display settings | |
| display eyesep 0.065000 | |
| display focallength 2.000000 | |
| display height 6.000000 | |
| display distance -2.000000 | |
| display projection Orthographic | |
| display nearclip set 0.010000 | |
| display farclip set 14.500000 | |
| display depthcue on | |
| display cuestart 0.500000 | |
| display cueend 10.000000 | |
| display cuestart 0.500000 | |
| display cueend 10.000000 | |
| display cuedensity 0.320000 | |
| display cuemode Linear | |
| display shadows off | |
| display ambientocclusion off | |
| display aoambient 0.800000 | |
| display aodirect 0.300000 | |
| display dof off | |
| display dof_fnumber 64.000000 | |
| display dof_focaldist 0.700000 | |
| mol new {/Users/ingolfsson1/Documents/Projects/Anthropic/SciVisAgentBench/Martini 3 complex membranes - Tutorials/Tutorial_1/example_files/symmetric-bilayer.gro} type gro first 0 last -1 step 1 filebonds 1 autobonds 1 waitfor all | |
| mol delrep 0 top | |
| mol representation Lines | |
| mol color Name | |
| mol selection {all} | |
| mol material Opaque | |
| mol addrep top | |
| mol selupdate 0 top 0 | |
| mol colupdate 0 top 0 | |
| mol scaleminmax top 0 0.000000 0.000000 | |
| mol smoothrep top 0 0 | |
| mol drawframes top 0 {now} | |
| mol clipplane center 0 0 top {0.0 0.0 0.0} | |
| mol clipplane color 0 0 top {0.5 0.5 0.5 } | |
| mol clipplane normal 0 0 top {0.0 0.0 1.0} | |
| mol clipplane status 0 0 top {0} | |
| mol clipplane center 1 0 top {0.0 0.0 0.0} | |
| mol clipplane color 1 0 top {0.5 0.5 0.5 } | |
| mol clipplane normal 1 0 top {0.0 0.0 1.0} | |
| mol clipplane status 1 0 top {0} | |
| mol clipplane center 2 0 top {0.0 0.0 0.0} | |
| mol clipplane color 2 0 top {0.5 0.5 0.5 } | |
| mol clipplane normal 2 0 top {0.0 0.0 1.0} | |
| mol clipplane status 2 0 top {0} | |
| mol clipplane center 3 0 top {0.0 0.0 0.0} | |
| mol clipplane color 3 0 top {0.5 0.5 0.5 } | |
| mol clipplane normal 3 0 top {0.0 0.0 1.0} | |
| mol clipplane status 3 0 top {0} | |
| mol clipplane center 4 0 top {0.0 0.0 0.0} | |
| mol clipplane color 4 0 top {0.5 0.5 0.5 } | |
| mol clipplane normal 4 0 top {0.0 0.0 1.0} | |
| mol clipplane status 4 0 top {0} | |
| mol clipplane center 5 0 top {0.0 0.0 0.0} | |
| mol clipplane color 5 0 top {0.5 0.5 0.5 } | |
| mol clipplane normal 5 0 top {0.0 0.0 1.0} | |
| mol clipplane status 5 0 top {0} | |
| mol rename top symmetric-bilayer.gro | |
| molinfo top set drawn 0 | |
| set viewpoints([molinfo top]) {{{1 0 0 -78.1802} {0 1 0 -50.6441} {0 0 1 -59.2096} {0 0 0 1}} {{0.999974 0.00257614 -0.00368925 0} {0.00374035 -0.0200065 0.999781 0} {0.00250227 -0.999773 -0.0200166 0} {0 0 0 1}} {{0.0207042 0 0 0} {0 0.0207042 0 0} {0 0 0.0207042 0} {0 0 0 1}} {{1 0 0 0} {0 1 0 0} {0 0 1 0} {0 0 0 1}}} | |
| lappend viewplist [molinfo top] | |
| # done with molecule 0 | |
| mol new {/Users/ingolfsson1/Documents/Projects/Anthropic/SciVisAgentBench/Martini 3 complex membranes - Tutorials/worked_example/1.ref_memb/POPC-CDL0-0.9-0.1-FLAT/5_PROD/md.gro} type gro first 0 last -1 step 1 filebonds 1 autobonds 1 waitfor all | |
| mol delrep 0 top | |
| mol representation VDW 1.000000 12.000000 | |
| mol color Name | |
| mol selection {all} | |
| mol material Opaque | |
| mol addrep top | |
| mol selupdate 0 top 0 | |
| mol colupdate 0 top 0 | |
| mol scaleminmax top 0 0.000000 0.000000 | |
| mol smoothrep top 0 0 | |
| mol drawframes top 0 {now} | |
| mol clipplane center 0 0 top {0.0 0.0 0.0} | |
| mol clipplane color 0 0 top {0.5 0.5 0.5 } | |
| mol clipplane normal 0 0 top {0.0 0.0 1.0} | |
| mol clipplane status 0 0 top {0} | |
| mol clipplane center 1 0 top {0.0 0.0 0.0} | |
| mol clipplane color 1 0 top {0.5 0.5 0.5 } | |
| mol clipplane normal 1 0 top {0.0 0.0 1.0} | |
| mol clipplane status 1 0 top {0} | |
| mol clipplane center 2 0 top {0.0 0.0 0.0} | |
| mol clipplane color 2 0 top {0.5 0.5 0.5 } | |
| mol clipplane normal 2 0 top {0.0 0.0 1.0} | |
| mol clipplane status 2 0 top {0} | |
| mol clipplane center 3 0 top {0.0 0.0 0.0} | |
| mol clipplane color 3 0 top {0.5 0.5 0.5 } | |
| mol clipplane normal 3 0 top {0.0 0.0 1.0} | |
| mol clipplane status 3 0 top {0} | |
| mol clipplane center 4 0 top {0.0 0.0 0.0} | |
| mol clipplane color 4 0 top {0.5 0.5 0.5 } | |
| mol clipplane normal 4 0 top {0.0 0.0 1.0} | |
| mol clipplane status 4 0 top {0} | |
| mol clipplane center 5 0 top {0.0 0.0 0.0} | |
| mol clipplane color 5 0 top {0.5 0.5 0.5 } | |
| mol clipplane normal 5 0 top {0.0 0.0 1.0} | |
| mol clipplane status 5 0 top {0} | |
| mol showrep top 0 0 | |
| mol representation VDW 1.000000 12.000000 | |
| mol color Name | |
| mol selection {resname CDL0} | |
| mol material Opaque | |
| mol addrep top | |
| mol selupdate 1 top 0 | |
| mol colupdate 1 top 0 | |
| mol scaleminmax top 1 0.000000 0.000000 | |
| mol smoothrep top 1 0 | |
| mol drawframes top 1 {now} | |
| mol clipplane center 0 1 top {0.0 0.0 0.0} | |
| mol clipplane color 0 1 top {0.5 0.5 0.5 } | |
| mol clipplane normal 0 1 top {0.0 0.0 1.0} | |
| mol clipplane status 0 1 top {0} | |
| mol clipplane center 1 1 top {0.0 0.0 0.0} | |
| mol clipplane color 1 1 top {0.5 0.5 0.5 } | |
| mol clipplane normal 1 1 top {0.0 0.0 1.0} | |
| mol clipplane status 1 1 top {0} | |
| mol clipplane center 2 1 top {0.0 0.0 0.0} | |
| mol clipplane color 2 1 top {0.5 0.5 0.5 } | |
| mol clipplane normal 2 1 top {0.0 0.0 1.0} | |
| mol clipplane status 2 1 top {0} | |
| mol clipplane center 3 1 top {0.0 0.0 0.0} | |
| mol clipplane color 3 1 top {0.5 0.5 0.5 } | |
| mol clipplane normal 3 1 top {0.0 0.0 1.0} | |
| mol clipplane status 3 1 top {0} | |
| mol clipplane center 4 1 top {0.0 0.0 0.0} | |
| mol clipplane color 4 1 top {0.5 0.5 0.5 } | |
| mol clipplane normal 4 1 top {0.0 0.0 1.0} | |
| mol clipplane status 4 1 top {0} | |
| mol clipplane center 5 1 top {0.0 0.0 0.0} | |
| mol clipplane color 5 1 top {0.5 0.5 0.5 } | |
| mol clipplane normal 5 1 top {0.0 0.0 1.0} | |
| mol clipplane status 5 1 top {0} | |
| mol rename top md.gro | |
| molinfo top set drawn 0 | |
| set viewpoints([molinfo top]) {{{1 0 0 -78.1802} {0 1 0 -50.6441} {0 0 1 -59.2096} {0 0 0 1}} {{0.999974 0.00257614 -0.00368925 0} {0.00374035 -0.0200065 0.999781 0} {0.00250227 -0.999773 -0.0200166 0} {0 0 0 1}} {{0.0207042 0 0 0} {0 0.0207042 0 0} {0 0 0.0207042 0} {0 0 0 1}} {{1 0 0 0} {0 1 0 0} {0 0 1 0} {0 0 0 1}}} | |
| lappend viewplist [molinfo top] | |
| # done with molecule 1 | |
| mol new {/Users/ingolfsson1/Documents/Projects/Anthropic/SciVisAgentBench/Martini 3 complex membranes - Tutorials/worked_example/2.curved_memb/POPC-CDL0-0.9-0.1-CURVED/5_PROD/md.gro} type gro first 0 last -1 step 1 filebonds 1 autobonds 1 waitfor all | |
| mol addfile {/Users/ingolfsson1/Documents/Projects/Anthropic/SciVisAgentBench/Martini 3 complex membranes - Tutorials/worked_example/2.curved_memb/POPC-CDL0-0.9-0.1-CURVED/5_PROD/md.xtc} type xtc first 0 last -1 step 1 filebonds 1 autobonds 1 waitfor all | |
| mol delrep 0 top | |
| mol representation VDW 1.400000 12.000000 | |
| mol color ColorID 1 | |
| mol selection {name PO4} | |
| mol material Opaque | |
| mol addrep top | |
| mol selupdate 0 top 0 | |
| mol colupdate 0 top 0 | |
| mol scaleminmax top 0 0.000000 0.000000 | |
| mol smoothrep top 0 0 | |
| mol drawframes top 0 {now} | |
| mol clipplane center 0 0 top {0.0 0.0 0.0} | |
| mol clipplane color 0 0 top {0.5 0.5 0.5 } | |
| mol clipplane normal 0 0 top {0.0 0.0 1.0} | |
| mol clipplane status 0 0 top {0} | |
| mol clipplane center 1 0 top {0.0 0.0 0.0} | |
| mol clipplane color 1 0 top {0.5 0.5 0.5 } | |
| mol clipplane normal 1 0 top {0.0 0.0 1.0} | |
| mol clipplane status 1 0 top {0} | |
| mol clipplane center 2 0 top {0.0 0.0 0.0} | |
| mol clipplane color 2 0 top {0.5 0.5 0.5 } | |
| mol clipplane normal 2 0 top {0.0 0.0 1.0} | |
| mol clipplane status 2 0 top {0} | |
| mol clipplane center 3 0 top {0.0 0.0 0.0} | |
| mol clipplane color 3 0 top {0.5 0.5 0.5 } | |
| mol clipplane normal 3 0 top {0.0 0.0 1.0} | |
| mol clipplane status 3 0 top {0} | |
| mol clipplane center 4 0 top {0.0 0.0 0.0} | |
| mol clipplane color 4 0 top {0.5 0.5 0.5 } | |
| mol clipplane normal 4 0 top {0.0 0.0 1.0} | |
| mol clipplane status 4 0 top {0} | |
| mol clipplane center 5 0 top {0.0 0.0 0.0} | |
| mol clipplane color 5 0 top {0.5 0.5 0.5 } | |
| mol clipplane normal 5 0 top {0.0 0.0 1.0} | |
| mol clipplane status 5 0 top {0} | |
| mol representation VDW 1.000000 12.000000 | |
| mol color ColorID 0 | |
| mol selection {name W} | |
| mol material Transparent | |
| mol addrep top | |
| mol selupdate 1 top 0 | |
| mol colupdate 1 top 0 | |
| mol scaleminmax top 1 0.000000 0.000000 | |
| mol smoothrep top 1 0 | |
| mol drawframes top 1 {now} | |
| mol clipplane center 0 1 top {0.0 0.0 0.0} | |
| mol clipplane color 0 1 top {0.5 0.5 0.5 } | |
| mol clipplane normal 0 1 top {0.0 0.0 1.0} | |
| mol clipplane status 0 1 top {0} | |
| mol clipplane center 1 1 top {0.0 0.0 0.0} | |
| mol clipplane color 1 1 top {0.5 0.5 0.5 } | |
| mol clipplane normal 1 1 top {0.0 0.0 1.0} | |
| mol clipplane status 1 1 top {0} | |
| mol clipplane center 2 1 top {0.0 0.0 0.0} | |
| mol clipplane color 2 1 top {0.5 0.5 0.5 } | |
| mol clipplane normal 2 1 top {0.0 0.0 1.0} | |
| mol clipplane status 2 1 top {0} | |
| mol clipplane center 3 1 top {0.0 0.0 0.0} | |
| mol clipplane color 3 1 top {0.5 0.5 0.5 } | |
| mol clipplane normal 3 1 top {0.0 0.0 1.0} | |
| mol clipplane status 3 1 top {0} | |
| mol clipplane center 4 1 top {0.0 0.0 0.0} | |
| mol clipplane color 4 1 top {0.5 0.5 0.5 } | |
| mol clipplane normal 4 1 top {0.0 0.0 1.0} | |
| mol clipplane status 4 1 top {0} | |
| mol clipplane center 5 1 top {0.0 0.0 0.0} | |
| mol clipplane color 5 1 top {0.5 0.5 0.5 } | |
| mol clipplane normal 5 1 top {0.0 0.0 1.0} | |
| mol clipplane status 5 1 top {0} | |
| mol representation VDW 1.100000 12.000000 | |
| mol color ColorID 2 | |
| mol selection {resname POPC} | |
| mol material Opaque | |
| mol addrep top | |
| mol selupdate 2 top 0 | |
| mol colupdate 2 top 0 | |
| mol scaleminmax top 2 0.000000 0.000000 | |
| mol smoothrep top 2 0 | |
| mol drawframes top 2 {now} | |
| mol clipplane center 0 2 top {0.0 0.0 0.0} | |
| mol clipplane color 0 2 top {0.5 0.5 0.5 } | |
| mol clipplane normal 0 2 top {0.0 0.0 1.0} | |
| mol clipplane status 0 2 top {0} | |
| mol clipplane center 1 2 top {0.0 0.0 0.0} | |
| mol clipplane color 1 2 top {0.5 0.5 0.5 } | |
| mol clipplane normal 1 2 top {0.0 0.0 1.0} | |
| mol clipplane status 1 2 top {0} | |
| mol clipplane center 2 2 top {0.0 0.0 0.0} | |
| mol clipplane color 2 2 top {0.5 0.5 0.5 } | |
| mol clipplane normal 2 2 top {0.0 0.0 1.0} | |
| mol clipplane status 2 2 top {0} | |
| mol clipplane center 3 2 top {0.0 0.0 0.0} | |
| mol clipplane color 3 2 top {0.5 0.5 0.5 } | |
| mol clipplane normal 3 2 top {0.0 0.0 1.0} | |
| mol clipplane status 3 2 top {0} | |
| mol clipplane center 4 2 top {0.0 0.0 0.0} | |
| mol clipplane color 4 2 top {0.5 0.5 0.5 } | |
| mol clipplane normal 4 2 top {0.0 0.0 1.0} | |
| mol clipplane status 4 2 top {0} | |
| mol clipplane center 5 2 top {0.0 0.0 0.0} | |
| mol clipplane color 5 2 top {0.5 0.5 0.5 } | |
| mol clipplane normal 5 2 top {0.0 0.0 1.0} | |
| mol clipplane status 5 2 top {0} | |
| mol showrep top 2 0 | |
| mol rename top md.gro | |
| set viewpoints([molinfo top]) {{{1 0 0 -78.1802} {0 1 0 -50.6441} {0 0 1 -59.2096} {0 0 0 1}} {{0.999974 0.00257614 -0.00368925 0} {0.00374035 -0.0200065 0.999781 0} {0.00250227 -0.999773 -0.0200166 0} {0 0 0 1}} {{0.0207042 0 0 0} {0 0.0207042 0 0} {0 0 0.0207042 0} {0 0 0 1}} {{1 0 0 0} {0 1 0 0} {0 0 1 0} {0 0 0 1}}} | |
| lappend viewplist [molinfo top] | |
| set topmol [molinfo top] | |
| # done with molecule 2 | |
| mol new /Users/ingolfsson1/Documents/Projects/Anthropic/SciVisAgentBench/RAS-Pilot2/initial-system-CG.gro type gro first 0 last -1 step 1 filebonds 1 autobonds 1 waitfor all | |
| mol delrep 0 top | |
| mol representation Lines | |
| mol color Name | |
| mol selection {all} | |
| mol material Opaque | |
| mol addrep top | |
| mol selupdate 0 top 0 | |
| mol colupdate 0 top 0 | |
| mol scaleminmax top 0 0.000000 0.000000 | |
| mol smoothrep top 0 0 | |
| mol drawframes top 0 {now} | |
| mol clipplane center 0 0 top {0.0 0.0 0.0} | |
| mol clipplane color 0 0 top {0.5 0.5 0.5 } | |
| mol clipplane normal 0 0 top {0.0 0.0 1.0} | |
| mol clipplane status 0 0 top {0} | |
| mol clipplane center 1 0 top {0.0 0.0 0.0} | |
| mol clipplane color 1 0 top {0.5 0.5 0.5 } | |
| mol clipplane normal 1 0 top {0.0 0.0 1.0} | |
| mol clipplane status 1 0 top {0} | |
| mol clipplane center 2 0 top {0.0 0.0 0.0} | |
| mol clipplane color 2 0 top {0.5 0.5 0.5 } | |
| mol clipplane normal 2 0 top {0.0 0.0 1.0} | |
| mol clipplane status 2 0 top {0} | |
| mol clipplane center 3 0 top {0.0 0.0 0.0} | |
| mol clipplane color 3 0 top {0.5 0.5 0.5 } | |
| mol clipplane normal 3 0 top {0.0 0.0 1.0} | |
| mol clipplane status 3 0 top {0} | |
| mol clipplane center 4 0 top {0.0 0.0 0.0} | |
| mol clipplane color 4 0 top {0.5 0.5 0.5 } | |
| mol clipplane normal 4 0 top {0.0 0.0 1.0} | |
| mol clipplane status 4 0 top {0} | |
| mol clipplane center 5 0 top {0.0 0.0 0.0} | |
| mol clipplane color 5 0 top {0.5 0.5 0.5 } | |
| mol clipplane normal 5 0 top {0.0 0.0 1.0} | |
| mol clipplane status 5 0 top {0} | |
| mol showrep top 0 0 | |
| mol representation VDW 1.000000 12.000000 | |
| mol color Name | |
| mol selection {name PO4} | |
| mol material Opaque | |
| mol addrep top | |
| mol selupdate 1 top 0 | |
| mol colupdate 1 top 0 | |
| mol scaleminmax top 1 0.000000 0.000000 | |
| mol smoothrep top 1 0 | |
| mol drawframes top 1 {now} | |
| mol clipplane center 0 1 top {0.0 0.0 0.0} | |
| mol clipplane color 0 1 top {0.5 0.5 0.5 } | |
| mol clipplane normal 0 1 top {0.0 0.0 1.0} | |
| mol clipplane status 0 1 top {0} | |
| mol clipplane center 1 1 top {0.0 0.0 0.0} | |
| mol clipplane color 1 1 top {0.5 0.5 0.5 } | |
| mol clipplane normal 1 1 top {0.0 0.0 1.0} | |
| mol clipplane status 1 1 top {0} | |
| mol clipplane center 2 1 top {0.0 0.0 0.0} | |
| mol clipplane color 2 1 top {0.5 0.5 0.5 } | |
| mol clipplane normal 2 1 top {0.0 0.0 1.0} | |
| mol clipplane status 2 1 top {0} | |
| mol clipplane center 3 1 top {0.0 0.0 0.0} | |
| mol clipplane color 3 1 top {0.5 0.5 0.5 } | |
| mol clipplane normal 3 1 top {0.0 0.0 1.0} | |
| mol clipplane status 3 1 top {0} | |
| mol clipplane center 4 1 top {0.0 0.0 0.0} | |
| mol clipplane color 4 1 top {0.5 0.5 0.5 } | |
| mol clipplane normal 4 1 top {0.0 0.0 1.0} | |
| mol clipplane status 4 1 top {0} | |
| mol clipplane center 5 1 top {0.0 0.0 0.0} | |
| mol clipplane color 5 1 top {0.5 0.5 0.5 } | |
| mol clipplane normal 5 1 top {0.0 0.0 1.0} | |
| mol clipplane status 5 1 top {0} | |
| mol representation VDW 1.000000 12.000000 | |
| mol color Name | |
| mol selection {name BB} | |
| mol material Opaque | |
| mol addrep top | |
| mol selupdate 2 top 0 | |
| mol colupdate 2 top 0 | |
| mol scaleminmax top 2 0.000000 0.000000 | |
| mol smoothrep top 2 0 | |
| mol drawframes top 2 {now} | |
| mol clipplane center 0 2 top {0.0 0.0 0.0} | |
| mol clipplane color 0 2 top {0.5 0.5 0.5 } | |
| mol clipplane normal 0 2 top {0.0 0.0 1.0} | |
| mol clipplane status 0 2 top {0} | |
| mol clipplane center 1 2 top {0.0 0.0 0.0} | |
| mol clipplane color 1 2 top {0.5 0.5 0.5 } | |
| mol clipplane normal 1 2 top {0.0 0.0 1.0} | |
| mol clipplane status 1 2 top {0} | |
| mol clipplane center 2 2 top {0.0 0.0 0.0} | |
| mol clipplane color 2 2 top {0.5 0.5 0.5 } | |
| mol clipplane normal 2 2 top {0.0 0.0 1.0} | |
| mol clipplane status 2 2 top {0} | |
| mol clipplane center 3 2 top {0.0 0.0 0.0} | |
| mol clipplane color 3 2 top {0.5 0.5 0.5 } | |
| mol clipplane normal 3 2 top {0.0 0.0 1.0} | |
| mol clipplane status 3 2 top {0} | |
| mol clipplane center 4 2 top {0.0 0.0 0.0} | |
| mol clipplane color 4 2 top {0.5 0.5 0.5 } | |
| mol clipplane normal 4 2 top {0.0 0.0 1.0} | |
| mol clipplane status 4 2 top {0} | |
| mol clipplane center 5 2 top {0.0 0.0 0.0} | |
| mol clipplane color 5 2 top {0.5 0.5 0.5 } | |
| mol clipplane normal 5 2 top {0.0 0.0 1.0} | |
| mol clipplane status 5 2 top {0} | |
| mol rename top initial-system-CG.gro | |
| molinfo top set drawn 0 | |
| set viewpoints([molinfo top]) {{{1 0 0 -78.1802} {0 1 0 -50.6441} {0 0 1 -59.2096} {0 0 0 1}} {{0.999974 0.00257614 -0.00368925 0} {0.00374035 -0.0200065 0.999781 0} {0.00250227 -0.999773 -0.0200166 0} {0 0 0 1}} {{0.0207042 0 0 0} {0 0.0207042 0 0} {0 0 0.0207042 0} {0 0 0 1}} {{1 0 0 0} {0 1 0 0} {0 0 1 0} {0 0 0 1}}} | |
| lappend viewplist [molinfo top] | |
| # done with molecule 3 | |
| foreach v $viewplist { | |
| molinfo $v set {center_matrix rotate_matrix scale_matrix global_matrix} $viewpoints($v) | |
| } | |
| foreach v $fixedlist { | |
| molinfo $v set fixed 1 | |
| } | |
| unset viewplist | |
| unset fixedlist | |
| mol top $topmol | |
| unset topmol | |
| proc vmdrestoremycolors {} { | |
| color scale colors RWB {1.0 0.0 0.0} {1.0 1.0 1.0} {0.0 0.0 1.0} | |
| color scale colors BWR {0.0 0.0 1.0} {1.0 1.0 1.0} {1.0 0.0 0.0} | |
| color scale colors RGryB {1.0 0.0 0.0} {0.5 0.5 0.5} {0.0 0.0 1.0} | |
| color scale colors BGryR {0.0 0.0 1.0} {0.5 0.5 0.5} {1.0 0.0 0.0} | |
| color scale colors RGB {1.0 0.0 0.0} {0.0 1.0 0.0} {0.0 0.0 1.0} | |
| color scale colors BGR {0.0 0.0 1.0} {0.0 1.0 0.0} {1.0 0.0 0.0} | |
| color scale colors RWG {1.0 0.0 0.0} {1.0 1.0 1.0} {0.0 1.0 0.0} | |
| color scale colors GWR {0.0 1.0 0.0} {1.0 1.0 1.0} {1.0 0.0 0.0} | |
| color scale colors GWB {0.0 1.0 0.0} {1.0 1.0 1.0} {0.0 0.0 1.0} | |
| color scale colors BWG {0.0 0.0 1.0} {1.0 1.0 1.0} {0.0 1.0 0.0} | |
| color scale colors BlkW {0.0 0.0 0.0} {0.5 0.5 0.5} {1.0 1.0 1.0} | |
| color scale colors WBlk {1.0 1.0 1.0} {0.5 0.5 0.5} {0.0 0.0 0.0} | |
| color scale colors cividis {0.0 0.0 0.0} {0.0 0.0 0.0} {0.0 0.0 0.0} | |
| color scale colors viridis {0.0 0.0 0.0} {0.0 0.0 0.0} {0.0 0.0 0.0} | |
| color scale colors magma {0.0 0.0 0.0} {0.0 0.0 0.0} {0.0 0.0 0.0} | |
| color scale colors plasma {0.0 0.0 0.0} {0.0 0.0 0.0} {0.0 0.0 0.0} | |
| color scale colors inferno {0.0 0.0 0.0} {0.0 0.0 0.0} {0.0 0.0 0.0} | |
| color scale colors CET_L3 {0.0 0.0 0.0} {0.0 0.0 0.0} {0.0 0.0 0.0} | |
| color scale colors CET_L8 {0.0 0.0 0.0} {0.0 0.0 0.0} {0.0 0.0 0.0} | |
| color scale colors CET_L9 {0.0 0.0 0.0} {0.0 0.0 0.0} {0.0 0.0 0.0} | |
| color scale colors CET_L16 {0.0 0.0 0.0} {0.0 0.0 0.0} {0.0 0.0 0.0} | |
| color scale colors CET_L17 {0.0 0.0 0.0} {0.0 0.0 0.0} {0.0 0.0 0.0} | |
| color scale colors CET_L18 {0.0 0.0 0.0} {0.0 0.0 0.0} {0.0 0.0 0.0} | |
| color scale colors CET_L19 {0.0 0.0 0.0} {0.0 0.0 0.0} {0.0 0.0 0.0} | |
| color scale colors CET_L20 {0.0 0.0 0.0} {0.0 0.0 0.0} {0.0 0.0 0.0} | |
| color scale colors CET_C2 {0.0 0.0 0.0} {0.0 0.0 0.0} {0.0 0.0 0.0} | |
| color scale colors CET_C4 {0.0 0.0 0.0} {0.0 0.0 0.0} {0.0 0.0 0.0} | |
| color scale colors CET_C6 {0.0 0.0 0.0} {0.0 0.0 0.0} {0.0 0.0 0.0} | |
| color scale colors CET_C7 {0.0 0.0 0.0} {0.0 0.0 0.0} {0.0 0.0 0.0} | |
| color scale colors CET_I1 {0.0 0.0 0.0} {0.0 0.0 0.0} {0.0 0.0 0.0} | |
| color scale colors CET_I2 {0.0 0.0 0.0} {0.0 0.0 0.0} {0.0 0.0 0.0} | |
| color scale colors CET_I3 {0.0 0.0 0.0} {0.0 0.0 0.0} {0.0 0.0 0.0} | |
| color scale colors CET_D11 {0.0 0.0 0.0} {0.0 0.0 0.0} {0.0 0.0 0.0} | |
| color scale colors CET_D12 {0.0 0.0 0.0} {0.0 0.0 0.0} {0.0 0.0 0.0} | |
| color scale colors turbo {0.0 0.0 0.0} {0.0 0.0 0.0} {0.0 0.0 0.0} | |
| color scale colors CET_R2 {0.0 0.0 0.0} {0.0 0.0 0.0} {0.0 0.0 0.0} | |
| color scale method RWB | |
| set colorcmds { | |
| {color Display {Background} white} | |
| {color Display {BackgroundTop} black} | |
| {color Display {BackgroundBot} blue2} | |
| {color Display {FPS} white} | |
| {color Axes {Labels} black} | |
| {color Name {LPA} green} | |
| {color Name {LPB} green} | |
| {color Name {G} pink} | |
| {color Name {D} cyan} | |
| {color Name {R} purple} | |
| {color Name {W} lime} | |
| {color Name {A} mauve} | |
| {color Name {T} ochre} | |
| {color Name {B} iceblue} | |
| {color Name {F} black} | |
| {color Name {M} yellow2} | |
| {color Type {LP} green} | |
| {color Type {DRUD} pink} | |
| {color Type {G} pink} | |
| {color Type {D} cyan} | |
| {color Type {R} purple} | |
| {color Type {W} lime} | |
| {color Type {A} mauve} | |
| {color Type {T} ochre} | |
| {color Type {B} iceblue} | |
| {color Type {F} black} | |
| {color Type {M} yellow2} | |
| {color Element {X} cyan} | |
| {color Element {Ac} ochre} | |
| {color Element {Ag} ochre} | |
| {color Element {Al} ochre} | |
| {color Element {Am} ochre} | |
| {color Element {Ar} ochre} | |
| {color Element {As} ochre} | |
| {color Element {At} ochre} | |
| {color Element {Au} ochre} | |
| {color Element {B} ochre} | |
| {color Element {Ba} ochre} | |
| {color Element {Be} ochre} | |
| {color Element {Bh} ochre} | |
| {color Element {Bi} ochre} | |
| {color Element {Bk} ochre} | |
| {color Element {Br} ochre} | |
| {color Element {Ca} ochre} | |
| {color Element {Cd} ochre} | |
| {color Element {Ce} ochre} | |
| {color Element {Cf} ochre} | |
| {color Element {Cl} ochre} | |
| {color Element {Cm} ochre} | |
| {color Element {Co} ochre} | |
| {color Element {Cr} ochre} | |
| {color Element {Cs} ochre} | |
| {color Element {Cu} ochre} | |
| {color Element {Db} ochre} | |
| {color Element {Ds} ochre} | |
| {color Element {Dy} ochre} | |
| {color Element {Er} ochre} | |
| {color Element {Es} ochre} | |
| {color Element {Eu} ochre} | |
| {color Element {F} ochre} | |
| {color Element {Fe} ochre} | |
| {color Element {Fm} ochre} | |
| {color Element {Fr} ochre} | |
| {color Element {Ga} ochre} | |
| {color Element {Gd} ochre} | |
| {color Element {Ge} ochre} | |
| {color Element {He} ochre} | |
| {color Element {Hf} ochre} | |
| {color Element {Hg} ochre} | |
| {color Element {Ho} ochre} | |
| {color Element {Hs} ochre} | |
| {color Element {I} ochre} | |
| {color Element {In} ochre} | |
| {color Element {Ir} ochre} | |
| {color Element {K} ochre} | |
| {color Element {Kr} ochre} | |
| {color Element {La} ochre} | |
| {color Element {Li} ochre} | |
| {color Element {Lr} ochre} | |
| {color Element {Lu} ochre} | |
| {color Element {Md} ochre} | |
| {color Element {Mg} ochre} | |
| {color Element {Mn} ochre} | |
| {color Element {Mo} ochre} | |
| {color Element {Mt} ochre} | |
| {color Element {Na} ochre} | |
| {color Element {Nb} ochre} | |
| {color Element {Nd} ochre} | |
| {color Element {Ne} ochre} | |
| {color Element {Ni} ochre} | |
| {color Element {No} ochre} | |
| {color Element {Np} ochre} | |
| {color Element {Os} ochre} | |
| {color Element {Pa} ochre} | |
| {color Element {Pb} ochre} | |
| {color Element {Pd} ochre} | |
| {color Element {Pm} ochre} | |
| {color Element {Po} ochre} | |
| {color Element {Pr} ochre} | |
| {color Element {Pt} ochre} | |
| {color Element {Pu} ochre} | |
| {color Element {Ra} ochre} | |
| {color Element {Rb} ochre} | |
| {color Element {Re} ochre} | |
| {color Element {Rf} ochre} | |
| {color Element {Rg} ochre} | |
| {color Element {Rh} ochre} | |
| {color Element {Rn} ochre} | |
| {color Element {Ru} ochre} | |
| {color Element {Sb} ochre} | |
| {color Element {Sc} ochre} | |
| {color Element {Se} ochre} | |
| {color Element {Sg} ochre} | |
| {color Element {Si} ochre} | |
| {color Element {Sm} ochre} | |
| {color Element {Sn} ochre} | |
| {color Element {Sr} ochre} | |
| {color Element {Ta} ochre} | |
| {color Element {Tb} ochre} | |
| {color Element {Tc} ochre} | |
| {color Element {Te} ochre} | |
| {color Element {Th} ochre} | |
| {color Element {Ti} ochre} | |
| {color Element {Tl} ochre} | |
| {color Element {Tm} ochre} | |
| {color Element {U} ochre} | |
| {color Element {V} ochre} | |
| {color Element {W} ochre} | |
| {color Element {Xe} ochre} | |
| {color Element {Y} ochre} | |
| {color Element {Yb} ochre} | |
| {color Element {Zr} ochre} | |
| {color Resname {DPPC} silver} | |
| {color Resname {DOPC} green} | |
| {color Resname {CHOL} white} | |
| {color Resname {W} pink} | |
| {color Resname {POPC} cyan} | |
| {color Resname {CDL0} purple} | |
| {color Resname {ION} lime} | |
| {color Resname {wall} mauve} | |
| {color Resname {POPX} ochre} | |
| {color Resname {DIPE} iceblue} | |
| {color Resname {DPSM} black} | |
| {color Resname {PAPC} yellow2} | |
| {color Resname {POPE} yellow3} | |
| {color Resname {PAPS} green2} | |
| {color Resname {PAP6} green3} | |
| {color Resname {ACE1} cyan2} | |
| {color Resname {CYF} cyan3} | |
| {color Resname {ACE2} blue2} | |
| {color Resname {CYM} blue3} | |
| {color Resname {NMA} violet} | |
| {color Resname {GTP} violet2} | |
| {color Resname {MG} magenta} | |
| {color Resname {HOH} magenta2} | |
| {color Chain {X} blue} | |
| {color Segname {} blue} | |
| {color Conformation {all} blue} | |
| {color Molecule {0} blue} | |
| {color Molecule {1} red} | |
| {color Molecule {2} gray} | |
| {color Molecule {3} orange} | |
| {color Structure {3_10_Helix} blue} | |
| {color Surface {Grasp} gray} | |
| {color Labels {Springs} orange} | |
| {color Stage {Even} gray} | |
| {color Stage {Odd} silver} | |
| } | |
| foreach colcmd $colorcmds { | |
| set val [catch {eval $colcmd}] | |
| } | |
| color change rgb 0 0.0 0.0 1.0 | |
| color change rgb 2 0.3499999940395355 0.3499999940395355 0.3499999940395355 | |
| color change rgb 3 1.0 0.5 0.0 | |
| color change rgb 4 1.0 1.0 0.0 | |
| color change rgb 5 0.5 0.5 0.20000000298023224 | |
| color change rgb 6 0.6000000238418579 0.6000000238418579 0.6000000238418579 | |
| color change rgb 7 0.0 1.0 0.0 | |
| color change rgb 9 1.0 0.6000000238418579 0.6000000238418579 | |
| color change rgb 11 0.6499999761581421 0.0 0.6499999761581421 | |
| color change rgb 12 0.5 0.8999999761581421 0.4000000059604645 | |
| color change rgb 13 0.8999999761581421 0.4000000059604645 0.699999988079071 | |
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