hf_upload/scripts/merge_adapter.py

#!/usr/bin/env python3
"""
Merge a LoRA adapter into the base Qwen3-Omni model and save full weights.

Handles thinker-only adapter key remapping automatically.

Usage:
  python merge_adapter.py \
    --base-model Rakancorle11/qwen3omni_full_sft_revised_thinker_key \
    --adapter /opt/dlami/nvme/LlamaFactory/saves/Qwen3-Omni-Instruct/dpo/qwen3omni_dpo_lora_with_audio_v4_data_8632 \
    --output /opt/dlami/nvme/merged_models/dpo_v4_8632
"""

from __future__ import annotations

import argparse
import json
import shutil
import tempfile
from pathlib import Path

import torch


def parse_args() -> argparse.Namespace:
    p = argparse.ArgumentParser(description="Merge LoRA adapter into base model.")
    p.add_argument("--base-model", type=str, required=True)
    p.add_argument("--adapter", type=str, required=True)
    p.add_argument("--output", type=str, required=True)
    return p.parse_args()


def main() -> None:
    args = parse_args()

    from transformers import (
        AutoConfig,
        AutoProcessor,
        Qwen3OmniMoeForConditionalGeneration,
        Qwen3OmniMoeThinkerConfig,
        Qwen3OmniMoeThinkerForConditionalGeneration,
    )

    print(f"[1/5] Loading processor from {args.base_model} ...")
    processor = AutoProcessor.from_pretrained(args.base_model, trust_remote_code=True)

    model_path = Path(args.base_model)
    cfg_path = model_path / "config.json" if model_path.exists() else None
    model_type = None
    if cfg_path and cfg_path.exists():
        with open(cfg_path) as f:
            model_type = json.load(f).get("model_type")
    if not model_type:
        try:
            from huggingface_hub import hf_hub_download
            cached = hf_hub_download(args.base_model, "config.json")
            with open(cached) as f:
                model_type = json.load(f).get("model_type")
        except Exception:
            pass
    print(f"  model_type: {model_type}")

    print(f"[2/5] Loading base model ...")
    if model_type == "qwen3_omni_moe_thinker":
        config = Qwen3OmniMoeThinkerConfig.from_pretrained(args.base_model)
        model = Qwen3OmniMoeThinkerForConditionalGeneration.from_pretrained(
            args.base_model, config=config, torch_dtype=torch.bfloat16, device_map="cpu",
        )
    else:
        config = AutoConfig.from_pretrained(args.base_model, trust_remote_code=True)
        model = Qwen3OmniMoeForConditionalGeneration.from_pretrained(
            args.base_model, config=config, torch_dtype=torch.bfloat16, device_map="cpu",
        )

    print(f"[3/5] Loading and remapping LoRA adapter: {args.adapter} ...")
    from peft import PeftModel
    from safetensors.torch import load_file, save_file

    adapter_cfg_path = Path(args.adapter) / "adapter_config.json"
    with open(adapter_cfg_path) as f:
        adapter_cfg = json.load(f)
    target_modules = adapter_cfg.get("target_modules", [])
    needs_remap = (
        any(t.startswith("model.layers.") for t in target_modules)
        and model_type != "qwen3_omni_moe_thinker"
    )

    adapter_path = args.adapter
    if needs_remap:
        print("  Adapter was trained on thinker-only model; remapping keys...")
        tmp_dir = Path(tempfile.mkdtemp(prefix="adapter_remap_"))
        for fn in Path(args.adapter).iterdir():
            if fn.is_dir():
                continue
            if fn.name == "adapter_config.json":
                new_targets = []
                for t in target_modules:
                    if t.startswith("model.layers."):
                        new_targets.append("thinker." + t)
                    elif t[0].isdigit():
                        new_targets.append("thinker.model.layers." + t)
                    else:
                        new_targets.append(t)
                adapter_cfg["target_modules"] = new_targets
                with open(tmp_dir / "adapter_config.json", "w") as f:
                    json.dump(adapter_cfg, f, indent=2)
            elif fn.suffix == ".safetensors" and "adapter" in fn.name:
                tensors = load_file(str(fn))
                remapped = {}
                for k, v in tensors.items():
                    if ".model.layers." in k and ".thinker." not in k:
                        new_k = k.replace(
                            "base_model.model.model.layers.",
                            "base_model.model.thinker.model.layers.",
                        )
                        remapped[new_k] = v
                    else:
                        remapped[k] = v
                save_file(remapped, str(tmp_dir / fn.name))
            else:
                shutil.copy2(str(fn), str(tmp_dir / fn.name))
        adapter_path = str(tmp_dir)

    model = PeftModel.from_pretrained(model, adapter_path)

    print(f"[4/5] Merging and unloading LoRA weights ...")
    model = model.merge_and_unload()

    out_path = Path(args.output)
    out_path.mkdir(parents=True, exist_ok=True)
    print(f"[5/5] Saving merged model to {out_path} ...")
    model.save_pretrained(out_path, safe_serialization=True)
    processor.save_pretrained(out_path)

    print(f"\nDone. Merged model saved to: {out_path}")


if __name__ == "__main__":
    main()