Shorten preparation section in dataset card
Browse files
README.md
CHANGED
|
@@ -1,12 +1,30 @@
|
|
| 1 |
---
|
| 2 |
-
viewer:
|
| 3 |
---
|
| 4 |
|
| 5 |
# OAS95-aligned-cleaned
|
| 6 |
|
| 7 |
-
|
| 8 |
|
| 9 |
-
|
| 10 |
-
|
| 11 |
-
-
|
| 12 |
-
-
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
---
|
| 2 |
+
viewer: false
|
| 3 |
---
|
| 4 |
|
| 5 |
# OAS95-aligned-cleaned
|
| 6 |
|
| 7 |
+
A cleaned and IMGT-aligned antibody sequence dataset derived from the Observed Antibody Space (OAS) database.
|
| 8 |
|
| 9 |
+
## Preparation
|
| 10 |
+
|
| 11 |
+
- Started from the OAS dataset preprocessed with the IgLM pipeline and clustered at 95% sequence identity.
|
| 12 |
+
- Numbered all sequences with ANARCII using the IMGT numbering scheme.
|
| 13 |
+
- Removed heavy- and light-chain sequences with numbering gaps at the first framework position.
|
| 14 |
+
- Removed light-chain sequences shorter than 90 residues.
|
| 15 |
+
- Retained 203,968,932 training sequences and 11,819,793 test sequences across 6 organism labels and 2 chain types.
|
| 16 |
+
|
| 17 |
+
## Columns
|
| 18 |
+
|
| 19 |
+
| Column | Description |
|
| 20 |
+
| --- | --- |
|
| 21 |
+
| `sequence` | IMGT-aligned amino acid sequence with gap characters. |
|
| 22 |
+
| `init_seq` | Original amino acid sequence without alignment gaps. |
|
| 23 |
+
| `class` | Organism label. |
|
| 24 |
+
| `type` | Antibody chain type: `Heavy` or `Light`. |
|
| 25 |
+
|
| 26 |
+
## Split Sizes
|
| 27 |
+
|
| 28 |
+
- train: 203,968,932
|
| 29 |
+
- test: 11,819,793
|
| 30 |
+
- total: 215,788,725
|