#!/usr/bin/env python """Phonon bar chart for slides - APS style. Uses pre-computed data: _phonopy_freqs_ref.json and reference qpoints.yaml. Outputs: pictures_ml/nequip_phonons.png """ import json import os import re import numpy as np import yaml import matplotlib matplotlib.use('Agg') import matplotlib.pyplot as plt SCRIPT_DIR = os.path.dirname(os.path.abspath(__file__)) OUT_PATH = '/home/apolyukhin/git/aps_slides/random_slides/pictures_ml/nequip_phonons.png' REF_QE_QPOINTS_YAML = ( '/home/apolyukhin/scripts/ml/diamond-qe/diamond_epc/displacements/qpoints.yaml' ) # ============================================================================= # APS slides style # ============================================================================= marp_text_color = "#575279" color_dfpt = "mediumseagreen" # DFT color color_ml = "black" # ML color alpha = 0.8 legend_alpha = 0.5 line_width = 3 fontsize = 22 plt.rcParams.update({ 'font.size': fontsize, 'mathtext.fontset': 'cm', 'text.color': marp_text_color, 'axes.labelcolor': marp_text_color, 'xtick.color': marp_text_color, 'ytick.color': marp_text_color, 'axes.edgecolor': marp_text_color, 'axes.labelpad': 10, }) cm1_per_thz = 33.35641 # ============================================================================= # Load data # ============================================================================= freqs_json = os.path.join(SCRIPT_DIR, '_phonopy_freqs_ref.json') with open(freqs_json) as f: ml_thz = np.array(json.load(f)['freqs_thz']) with open(REF_QE_QPOINTS_YAML) as f: data = yaml.safe_load(f) qe_cm1 = np.array([b['frequency'] for b in data['phonon'][0]['band']]) qe_thz = qe_cm1 / cm1_per_thz dfpt_cm1 = qe_thz * cm1_per_thz ml_cm1 = ml_thz * cm1_per_thz n = max(len(dfpt_cm1), len(ml_cm1)) modes = np.arange(1, n + 1) d = np.pad(dfpt_cm1, (0, n - len(dfpt_cm1))) m = np.pad(ml_cm1, (0, n - len(ml_cm1))) # MAE mae = np.mean(np.abs(d - m)) print(f'MAE: {mae:.1f} cm-1') # ============================================================================= # Plot # ============================================================================= fig, ax = plt.subplots(figsize=(8, 5.5), facecolor='none') ax.set_facecolor('none') w = 0.35 ax.bar(modes - w/2, d, w, label='DFPT', color=color_dfpt, alpha=alpha) ax.bar(modes + w/2, m, w, label='ML (NequIP)', color=color_ml, alpha=alpha) ax.set_xlabel('Mode') ax.set_ylabel('Frequency (cm$^{-1}$)') ax.set_xticks(modes) ax.legend(loc='upper left', framealpha=legend_alpha, fontsize=0.75*fontsize) plt.tight_layout() plt.savefig(OUT_PATH, dpi=300, transparent=True, bbox_inches='tight') print(f'Saved: {OUT_PATH}')