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+ </radfunc>
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+ </proj>
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+ </nonlocal-projectors>
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+ </psml>
releases/diamond_hpro_deeph_v2/basis/dzp/siesta.ORB_INDX ADDED
The diff for this file is too large to render. See raw diff
 
releases/diamond_hpro_deeph_v2/basis/dzp/siesta.fdf ADDED
@@ -0,0 +1,51 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ SystemName Diamond
2
+ SystemLabel siesta
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+
4
+ NumberOfAtoms 2
5
+ NumberOfSpecies 1
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+ %block ChemicalSpeciesLabel
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+ 1 6 C
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+ %endblock ChemicalSpeciesLabel
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+
10
+ LatticeConstant 3.567 Ang
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+ %block LatticeVectors
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+ 0.0 0.5 0.5
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+ 0.5 0.0 0.5
14
+ 0.5 0.5 0.0
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+ %endblock LatticeVectors
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+
17
+ AtomicCoordinatesFormat Fractional
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+ %block AtomicCoordinatesAndAtomicSpecies
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+ 0.00 0.00 0.00 1
20
+ 0.25 0.25 0.25 1
21
+ %endblock AtomicCoordinatesAndAtomicSpecies
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+
23
+ PAO.BasisSize DZP
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+ PAO.BasisType nodes
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+ %block PAO.Basis
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+ C 2
27
+ n=2 0 2
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+ 0.000 0.000
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+ 1.000 1.000
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+ n=2 1 2 P
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+ 0.000 0.000
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+ 1.000 1.000
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+ %endblock PAO.Basis
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+
35
+ %block kgrid_Monkhorst_Pack
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+ 4 0 0 0.0
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+ 0 4 0 0.0
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+ 0 0 4 0.0
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+ %endblock kgrid_Monkhorst_Pack
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+
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+ SolutionMethod diagon
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+ OccupationFunction MP
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+ ElectronicTemperature 0.0000 eV
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+ MaxSCFIterations 300
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+ MeshCutoff 320.0 Ry
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+ DM.Tolerance 1.E-6
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+ SCF.H.Converge F
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+ UseSaveData F
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+ DM.UseSaveDM F
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+ SpinOrbit F
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+ Diag.ParallelOverK T
releases/diamond_hpro_deeph_v2/data/raman_v3_308/README.md ADDED
@@ -0,0 +1,22 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ # Large diamond EPC/Raman HPRO training set v3
2
+
3
+ **Main feature:** Large 308-frame HPRO dataset for diamond EPC/Raman and Hamiltonian training, spanning small FD, random displacement amplitudes, strain, and sc4 transfer frames.
4
+
5
+ **Source cluster path:** `/capstor/scratch/cscs/apoliukh/diamond_new_data/data`
6
+
7
+ **Frames copied into this release:** 308
8
+
9
+ ## Contents
10
+
11
+ Each frame directory contains HPRO/DeepH-compatible files where available:
12
+
13
+ - `aohamiltonian/hamiltonians.h5`
14
+ - `aohamiltonian/overlaps.h5`
15
+ - QE/HPRO input files such as `scf.in`, `nscf.in`, `pw2bgw.in`, `calc.py` when present
16
+ - `meta.release.json` with source path and release metadata
17
+
18
+ ## Notes
19
+
20
+ - Tiers: equilibrium, tier1_fine, tier2_mid, tier3_wide, single_atom_fd, strain_iso, strain_uni, sc4_prim.
21
+ - Designed for FD-EPC/Raman and ZPR-relevant Hamiltonian learning.
22
+ - The broad distribution exposed objective mismatch: lower H-loss did not guarantee near-Fermi eigenvalue quality.
releases/diamond_hpro_deeph_v2/data/raman_v3_308/frames.txt ADDED
@@ -0,0 +1,308 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
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+ "natoms": 128,
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+ "natoms": 128,
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+ "idx": 24,
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+ "cell": "prim",
2485
+ "natoms": 128,
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+ "path": "sc4_prim/frame_024_amp0.050"
2487
+ },
2488
+ {
2489
+ "tier": "sc4_prim",
2490
+ "idx": 25,
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+ "amp": 0.05,
2492
+ "cell": "prim",
2493
+ "natoms": 128,
2494
+ "path": "sc4_prim/frame_025_amp0.050"
2495
+ },
2496
+ {
2497
+ "tier": "sc4_prim",
2498
+ "idx": 26,
2499
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+ "cell": "prim",
2501
+ "natoms": 128,
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+ "path": "sc4_prim/frame_026_amp0.050"
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+ },
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+ {
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+ "tier": "sc4_prim",
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+ "idx": 27,
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+ "cell": "prim",
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+ "natoms": 128,
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+ "path": "sc4_prim/frame_027_amp0.050"
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+ },
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+ "tier": "sc4_prim",
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+ "idx": 28,
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+ "amp": 0.05,
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+ "cell": "prim",
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+ "natoms": 128,
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+ "path": "sc4_prim/frame_028_amp0.050"
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+ },
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+ {
2521
+ "tier": "sc4_prim",
2522
+ "idx": 29,
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+ "amp": 0.05,
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+ "cell": "prim",
2525
+ "natoms": 128,
2526
+ "path": "sc4_prim/frame_029_amp0.050"
2527
+ },
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+ {
2529
+ "tier": "sc4_prim",
2530
+ "idx": 30,
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+ "amp": 0.05,
2532
+ "cell": "prim",
2533
+ "natoms": 128,
2534
+ "path": "sc4_prim/frame_030_amp0.050"
2535
+ },
2536
+ {
2537
+ "tier": "equilibrium",
2538
+ "cell": "conv",
2539
+ "natoms": 216,
2540
+ "path": "equilibrium/conv"
2541
+ },
2542
+ {
2543
+ "tier": "equilibrium",
2544
+ "cell": "prim",
2545
+ "natoms": 128,
2546
+ "path": "equilibrium/prim"
2547
+ }
2548
+ ]
2549
+ }
releases/diamond_hpro_deeph_v2/data/raman_v3_308/params.json ADDED
@@ -0,0 +1,74 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ {
2
+ "_doc": "Diamond ML training dataset v3. Random displacements only. DZP target. See summary.md.",
3
+ "random_seed": 42,
4
+ "lattice": {
5
+ "a_conv": 3.567,
6
+ "_doc_a_conv": "Conventional cubic lattice constant in Angstrom. Diamond DFT-PBE relaxed value."
7
+ },
8
+ "tiers": [
9
+ {"name": "tier1_fine", "cell": "conv", "sc": [3,3,3], "n_per_amp": 20, "amplitudes": [0.005, 0.01, 0.015, 0.02], "seed_offset": 0},
10
+ {"name": "tier2_mid", "cell": "conv", "sc": [3,3,3], "n_per_amp": 20, "amplitudes": [0.03, 0.04, 0.05, 0.06], "seed_offset": 100},
11
+ {"name": "tier3_wide", "cell": "conv", "sc": [3,3,3], "n_per_amp": 20, "amplitudes": [0.08, 0.10, 0.12], "seed_offset": 200},
12
+ {"name": "single_atom_fd", "cell": "conv", "sc": [3,3,3], "type": "single_atom_fd", "amplitudes": [0.01, 0.02, 0.05, 0.08]},
13
+ {"name": "strain_iso", "cell": "conv", "sc": [3,3,3], "n_per_strain": 5, "strains": [-0.01, -0.005, 0.005, 0.01], "type": "strain_iso", "disp_amp": 0.02, "seed_offset": 300},
14
+ {"name": "strain_uni", "cell": "conv", "sc": [3,3,3], "n_per_strain": 4, "strains": [-0.01, -0.005, 0.005, 0.01], "axes": ["x","y","z"], "type": "strain_uni", "disp_amp": 0.02, "seed_offset": 400},
15
+ {"name": "sc4_prim", "cell": "prim", "sc": [4,4,4], "n_per_amp": 10, "amplitudes": [0.01, 0.03, 0.05], "seed_offset": 500},
16
+ {"name": "equilibrium", "cell": "both", "type": "equilibrium"}
17
+ ],
18
+ "qe": {
19
+ "ecutwfc": 80.0,
20
+ "ecutrho": 320.0,
21
+ "conv_thr": 1.0e-13,
22
+ "diagonalization": "david",
23
+ "mixing_mode": "plain",
24
+ "mixing_beta": 0.70,
25
+ "occupations": "fixed",
26
+ "tprnfor": true,
27
+ "tstress": true,
28
+ "k_sc_conv": [3, 3, 3],
29
+ "k_sc_prim": [3, 3, 3],
30
+ "nbnd_extra": 80,
31
+ "_doc_nbnd": "Total nbnd = nelec/2 + nbnd_extra. Diamond C 4 valence -> nelec = 4*natoms; nbnd = 2*natoms + 80."
32
+ },
33
+ "pseudo": {
34
+ "name": "C-PBE-NLCC.upf",
35
+ "_doc": "Same NLCC pseudo used in dataset B (eiger qe-agent/studies/zg-test/pp/). Fetched on cluster."
36
+ },
37
+ "hpro": {
38
+ "ecutwfn": 30,
39
+ "basis": "DZP",
40
+ "interface": "siesta",
41
+ "conda_env": "epc_ml"
42
+ },
43
+ "deeph_e3": {
44
+ "_doc": "Reference config for downstream training step (not run in this folder).",
45
+ "cutoff_radius": 7.0,
46
+ "lmax": 4,
47
+ "irreps_embed": "64x0e",
48
+ "irreps_mid": "48x0e+48x1e+40x2e+16x3e+8x4e",
49
+ "num_blocks": 4,
50
+ "num_attn_heads": 2,
51
+ "embedding_smearing": 7.0,
52
+ "lr": 0.001,
53
+ "split": [0.8, 0.1, 0.1]
54
+ },
55
+ "execution": {
56
+ "local_mpi_np": 8,
57
+ "eiger_nodes": 2,
58
+ "eiger_ntasks": 256,
59
+ "eiger_npool": 8,
60
+ "eiger_time": "02:00:00",
61
+ "eiger_account": "mr33",
62
+ "eiger_constraint": "mc"
63
+ },
64
+ "paths": {
65
+ "qe_setup": "~/scripts/tools/qe.sh",
66
+ "siesta": "/home/apolyukhin/soft/siesta-v4.1.5/Obj/siesta",
67
+ "conda_base": "/home/apolyukhin/anaconda3",
68
+ "eiger_root": "/capstor/scratch/cscs/apoliukh/diamond_new_data",
69
+ "eiger_pseudo": "/capstor/scratch/cscs/apoliukh/qe-agent/studies/zg-test/pp",
70
+ "eiger_aobasis_src": "/capstor/scratch/cscs/apoliukh/qe-agent/epc_ml_zg/aobasis",
71
+ "eiger_qe_bin": "/users/apoliukh/soft/q-e_eiger/bin",
72
+ "eiger_conda_init": "/capstor/scratch/cscs/apoliukh/soft/miniforge3/etc/profile.d/conda.sh"
73
+ }
74
+ }
releases/diamond_hpro_deeph_v2/data/raman_v3_308/summary.md ADDED
@@ -0,0 +1,198 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ # Diamond ML Training Dataset C — Handoff
2
+
3
+ ## Goal
4
+
5
+ Build new diamond ML training set for DeepH-E3 H-model, replacing prior datasets A (16-atom 2×2×2 conv, 50 frames, local) and B (54-atom 3×3×3 prim, 61 frames, Eiger). Target: reliable AO-basis Hamiltonian eigenvalues for FD electron-phonon coupling (Raman) and ZPR. Forces are written by QE for future NequIP training but **NequIP is not trained in this dataset**.
6
+
7
+ ## Provenance
8
+
9
+ - Prior datasets summary: `example/diamond/2_training/` (A) + `/capstor/scratch/cscs/apoliukh/qe-agent/epc_ml_zg_train/` (B)
10
+ - Memory entries: `project_5zg_ml_eigenvalues.md`, `project_diamond_zg_pipeline.md`, `project_eiger_epc_ml_env.md`
11
+ - Paper anchor: arXiv:2601.02938 (DeepH-pack), a-Si recipe (216 at, ecut 60 Ry, k=3×3×3, SIESTA DZP via HPRO)
12
+
13
+ ## Dataset content (308 frames)
14
+
15
+ | Tier | Cell | Atoms | Frames | Amplitude (Å) | Notes |
16
+ |---|---|---|---|---|---|
17
+ | `tier1_fine` | 3×3×3 conv | 216 | 80 | 0.005, 0.01, 0.015, 0.02 (×20) | linear-response regime, primary FD-EPC training |
18
+ | `tier2_mid` | 3×3×3 conv | 216 | 80 | 0.03, 0.04, 0.05, 0.06 (×20) | curvature sampling, ZG-equivalent |
19
+ | `tier3_wide` | 3×3×3 conv | 216 | 60 | 0.08, 0.10, 0.12 (×20) | anharmonic robustness |
20
+ | `single_atom_fd` | 3×3×3 conv | 216 | 24 | ±0.01, ±0.02, ±0.05, ±0.08 | atom 0, 3 axes × 2 signs × 4 amp; clean FD-derivative reference |
21
+ | `strain_iso` | 3×3×3 conv | 216 | 20 | iso vol ±0.5%, ±1% × 5 disp | volume coupling for ZPR |
22
+ | `strain_uni` | 3×3×3 conv | 216 | 12 | uniaxial xyz ±0.5%, ±1% | uniaxial strain coupling |
23
+ | `sc4_prim` | 4×4×4 prim | 128 | 30 | 0.01, 0.03, 0.05 (×10) | rcut transfer test for DeepH-E3 |
24
+ | `equilibrium` | both | 216, 128 | 2 | — | undisplaced refs |
25
+
26
+ Total = 308. Manifest at `data/manifest.json`. Flat path list at `data/frames.txt`.
27
+
28
+ ## Convergence parameters
29
+
30
+ ### QE SCF (each frame)
31
+
32
+ ```
33
+ ecutwfc = 80 Ry
34
+ ecutrho = 320 Ry
35
+ conv_thr = 1d-13
36
+ xc = PBE
37
+ pseudo = C-PBE-NLCC.upf (NLCC, dataset B's pseudo)
38
+ diagonalization = david
39
+ mixing_mode = plain
40
+ mixing_beta = 0.70
41
+ occupations = fixed
42
+ nbnd = 2*nat + 80 (216 at -> nbnd=512; 128 at -> nbnd=336)
43
+ tprnfor = .true. (forces written for future NequIP)
44
+ tstress = .true.
45
+ SCF k-grid = 3×3×3 in SC (-> 14.3³ prim equivalent for 216 at,
46
+ 12.0³ exact for 128 at)
47
+ ```
48
+
49
+ ### HPRO projection (each frame)
50
+
51
+ ```
52
+ basis = SIESTA DZP (13 AO/C, 25 target blocks)
53
+ ecutwfn = 30 Ry
54
+ interface = siesta + qe-bgw
55
+ output = aohamiltonian/{hamiltonians.h5, overlaps.h5}
56
+ ```
57
+
58
+ Aobasis source: `/capstor/scratch/cscs/apoliukh/qe-agent/epc_ml_zg/aobasis/` (siesta.fdf, C.ion, siesta.HSX, siesta.STRUCT_OUT all present).
59
+
60
+ ### k-sampling rationale
61
+
62
+ | Cell | SC k-grid | Primitive equivalent | Meets 9-12³ target? |
63
+ |---|---|---|---|
64
+ | 3×3×3 conv (216 at, N_prim=108) | 3×3×3 | 14.28³ | ✓ exceeds 12³ |
65
+ | 4×4×4 prim (128 at, N_prim=64) | 3×3×3 | 12.00³ | ✓ exact 12³ |
66
+
67
+ Both blocks share the same SC MP grid → simpler workflow.
68
+
69
+ ## Folder layout
70
+
71
+ ```
72
+ diamond_new_data/
73
+ ├── summary.md (this file)
74
+ ├── params.json (full config; edit before re-running prepare.py)
75
+ ├── prepare.py (generates data/ tree)
76
+ ├── run_local.sh (single-frame local runner)
77
+ ├── submit_eiger.sbatch (SLURM array runner)
78
+ ├── data/ (created by prepare.py)
79
+ │ ├── manifest.json
80
+ │ ├── frames.txt (308 lines, line N = frame N for SLURM)
81
+ │ ├── tier1_fine/frame_001_amp0.005/{scf.in,pw2bgw.in,calc.py}
82
+ │ ├── tier1_fine/frame_002_amp0.005/...
83
+ │ ├── ...
84
+ │ └── equilibrium/{conv,prim}/...
85
+ ├── pseudo/ (drop C-PBE-NLCC.upf here on local; symlink on cluster)
86
+ └── aobasis/ (drop SIESTA outputs here on local; symlink on cluster)
87
+ ```
88
+
89
+ Each frame folder contains:
90
+ - `scf.in` — QE input
91
+ - `pw2bgw.in` — VSC dump
92
+ - `calc.py` — HPRO reconstruction (same script structure as dataset B)
93
+
94
+ After SCF+HPRO, each frame folder gains: `tmp/`, `VSC` (deleted after HPRO), `scf.out`, `pw2bgw.out`, `hpro.log`, `aohamiltonian/{hamiltonians.h5,overlaps.h5}`.
95
+
96
+ ## Eiger mirror
97
+
98
+ Cluster root: `/capstor/scratch/cscs/apoliukh/diamond_new_data/`
99
+
100
+ Mirrored layout identical, plus:
101
+ - `pseudo/` → symlink to `/capstor/scratch/cscs/apoliukh/qe-agent/studies/zg-test/pp/`
102
+ - `aobasis/` → copy from `/capstor/scratch/cscs/apoliukh/qe-agent/epc_ml_zg/aobasis/`
103
+ - `submit_eiger.sbatch` (SLURM array 1–308)
104
+ - `logs/`
105
+
106
+ ## How to run (handoff agent)
107
+
108
+ ### Prerequisites for cluster part
109
+
110
+ 1. **Load qeclaw skills** for cluster interaction (Slurm submit/monitor, scp, scratch quotas).
111
+ 2. SSH access as `apoliukh@eiger`. Repo paths assumed.
112
+ 3. Conda env `epc_ml` already exists at `/capstor/scratch/cscs/apoliukh/soft/miniforge3/envs/epc_ml` with HPRO installed.
113
+ 4. QE binary at `/users/apoliukh/soft/q-e_eiger/bin/{pw.x,pw2bgw.x}`.
114
+
115
+ ### Steps
116
+
117
+ **(A) Smoke test, 5 frames, local (optional)**
118
+
119
+ ```bash
120
+ cd /home/apolyukhin/Development/epc_ml/example/diamond_new_data
121
+ # pseudo/ and aobasis/ must be populated locally first if running locally
122
+ ./run_local.sh tier1_fine/frame_001_amp0.005
123
+ ```
124
+
125
+ **(B) Full run on Eiger**
126
+
127
+ ```bash
128
+ ssh eiger
129
+ cd /capstor/scratch/cscs/apoliukh/diamond_new_data
130
+ mkdir -p logs
131
+
132
+ # Phase A smoke test: 5 frames first
133
+ sbatch --array=1-5 submit_eiger.sbatch
134
+ # Monitor; verify scf.out converges, VSC is produced, hamiltonians.h5 written.
135
+
136
+ # Phase B remaining frames
137
+ sbatch --array=6-308 submit_eiger.sbatch
138
+ ```
139
+
140
+ **(C) Validate per-frame**
141
+
142
+ For each completed frame, check:
143
+ - `scf.out` ends with `JOB DONE.`, `convergence has been achieved`, total force `< 0.5 Ry/au` (large amp tier-3 may exceed; not an error)
144
+ - `aohamiltonian/hamiltonians.h5` exists, file size > 1 MB
145
+ - `aohamiltonian/overlaps.h5` exists
146
+
147
+ **(D) Pull aohamiltonian to local for downstream training (after all done)**
148
+
149
+ Plan ~ a few GB total (DeepH-E3 graph builder consumes hamiltonians.h5 + overlaps.h5 + scf.in geometry). Can stay on cluster — DeepH-E3 v2 training also runs on Daint GH200 (lp18 account).
150
+
151
+ ## Compute estimate
152
+
153
+ Per frame (216 at, ecut 80 Ry, k=3³ MP → ~4 irr k):
154
+ - SCF: ~25–35 min on 256 mc ranks
155
+ - pw2bgw: ~2 min
156
+ - HPRO: ~5–10 min on 1 GH200
157
+
158
+ Per frame (128 at, k=3³ MP → ~10 irr k): ~15 min SCF.
159
+
160
+ Cluster compute: 308 frames × 30 min ≈ **155 node-h** (≈ 2.5k mc-CPU-h on 2-node sbatch). With 1 array job at concurrency 20: **~8 h wall**. At 50 concurrent: **~3 h wall**.
161
+
162
+ ## Validation gates (after dataset done, before declaring success)
163
+
164
+ 1. **Bands MAE:** DeepH-E3 v2 vs HPRO DFT, full 6×6×6 prim mesh on UC reference, MAE ≤ 5 meV
165
+ 2. **ZPR:** sc=3 paper-lattice ZG (reuse `diamond_zg` workflow), within 5 meV (relax) or 1 meV (tight) of DFPT reference
166
+ 3. **EPC FD vs DFPT:** q=Γ on 6×6×6 prim, ≤ 10 % per-mode at ik=1, 3
167
+ 4. **On-res Raman EL=5.633 eV:** HPRO_v2/PW32 = 0.95 ± 0.05
168
+
169
+ ## Known constraints / caveats
170
+
171
+ - `tprnfor=.true.` adds modest cost (~5%); kept for future NequIP forces training, not consumed in this folder
172
+ - `tstress=.true.` adds another modest cost; kept for stress-aware ZPR
173
+ - `nbnd=2*nat+80` empirically sufficient for HPRO Bogoliubov span; increase if HPRO log warns about empty-band residual
174
+ - Single-atom FD block uses **atom 0 only** for clean derivative reference; if needed, generalize later
175
+ - Strained blocks: lattice scaling applied to SC vectors (`sc_lat * (1+s)` iso, `F @ sc_lat` uniaxial); atomic positions still in fractional coords → stay on-lattice under strain
176
+ - DeepH-E3 cutoff 7.0 Å fits 216-at conv (side 10.7 Å) and 128-at prim (side 14.3 Å) safely (cell ≥ 2 × cutoff)
177
+
178
+ ## Decisions locked (do not change without re-running prepare.py)
179
+
180
+ | Knob | Value |
181
+ |---|---|
182
+ | Lattice constant | 3.567 Å (DFT-PBE relaxed) |
183
+ | 216-at SC kind | conventional cubic 3×3×3 |
184
+ | 128-at SC kind | primitive 4×4×4 |
185
+ | Pseudo | C-PBE-NLCC.upf |
186
+ | ecut | 80 / 320 Ry |
187
+ | SC k-grid | 3×3×3 (both cells) |
188
+ | AO basis | SIESTA DZP |
189
+ | HPRO ecutwfn | 30 Ry |
190
+ | Random seed (base) | 42 |
191
+
192
+ ## Pending tasks for handoff agent
193
+
194
+ 1. Populate `pseudo/` on cluster (symlink to existing) and `aobasis/` (copy from existing)
195
+ 2. Submit smoke-test array `--array=1-5` on Eiger; check outputs
196
+ 3. If smoke test passes, submit full `--array=6-308`
197
+ 4. Monitor; on failures retry single-frame jobs
198
+ 5. Once dataset complete, hand back to user for DeepH-E3 v2 training planning
releases/diamond_hpro_deeph_v2/data/zg_endpoints/README.md ADDED
@@ -0,0 +1,22 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ # Diamond ZG endpoint/reference HPRO labels
2
+
3
+ **Main feature:** Equilibrium and zero-point-renormalized ZG endpoint structures for sc3..sc8, used as the main ZPR reference and validation target.
4
+
5
+ **Source cluster path:** `/capstor/scratch/cscs/apoliukh/qe-agent/epc_ml_zg`
6
+
7
+ **Frames copied into this release:** 12
8
+
9
+ ## Contents
10
+
11
+ Each frame directory contains HPRO/DeepH-compatible files where available:
12
+
13
+ - `aohamiltonian/hamiltonians.h5`
14
+ - `aohamiltonian/overlaps.h5`
15
+ - QE/HPRO input files such as `scf.in`, `nscf.in`, `pw2bgw.in`, `calc.py` when present
16
+ - `meta.release.json` with source path and release metadata
17
+
18
+ ## Notes
19
+
20
+ - Contains sc3..sc8, each with equil and ZG structures.
21
+ - Endpoint/reference data, not a broad random training distribution.
22
+ - Useful for ZPR gap probes, endpoint fine-tuning, and validating transfer across supercell sizes.
releases/diamond_hpro_deeph_v2/data/zg_train_a0/README.md ADDED
@@ -0,0 +1,22 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ # A0 original diamond ZG training set
2
+
3
+ **Main feature:** Original 61-frame 3x3x3 primitive-cell diamond training set that gave the best pre-A6 baseline for ZPR.
4
+
5
+ **Source cluster path:** `/capstor/scratch/cscs/apoliukh/qe-agent/epc_ml_zg_train/data`
6
+
7
+ **Frames copied into this release:** 61
8
+
9
+ ## Contents
10
+
11
+ Each frame directory contains HPRO/DeepH-compatible files where available:
12
+
13
+ - `aohamiltonian/hamiltonians.h5`
14
+ - `aohamiltonian/overlaps.h5`
15
+ - QE/HPRO input files such as `scf.in`, `nscf.in`, `pw2bgw.in`, `calc.py` when present
16
+ - `meta.release.json` with source path and release metadata
17
+
18
+ ## Notes
19
+
20
+ - Contains equilibrium plus disp-01..disp-60.
21
+ - Baseline basin used later for endpoint fine-tuning.
22
+ - Important because larger same-objective datasets improved H-MSE but often worsened the ZPR observable.
releases/diamond_hpro_deeph_v2/data/zg_train_a1_clean/README.md ADDED
@@ -0,0 +1,22 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ # A1 clean same-distribution random frames
2
+
3
+ **Main feature:** Sixty additional random displacement frames, designed to test whether simply adding more similar frames improves ZPR.
4
+
5
+ **Source cluster path:** `/capstor/scratch/cscs/apoliukh/qe-agent/epc_ml_zg_A1_clean/data`
6
+
7
+ **Frames copied into this release:** 60
8
+
9
+ ## Contents
10
+
11
+ Each frame directory contains HPRO/DeepH-compatible files where available:
12
+
13
+ - `aohamiltonian/hamiltonians.h5`
14
+ - `aohamiltonian/overlaps.h5`
15
+ - QE/HPRO input files such as `scf.in`, `nscf.in`, `pw2bgw.in`, `calc.py` when present
16
+ - `meta.release.json` with source path and release metadata
17
+
18
+ ## Notes
19
+
20
+ - Contains disp-061..disp-120.
21
+ - Lowered average Hamiltonian RMSE relative to A0, but worsened near-gap ZPR errors.
22
+ - Useful as a negative-control dataset for objective/observable mismatch.
releases/diamond_hpro_deeph_v2/data/zg_train_a1_clean/disp-069/calc.py ADDED
@@ -0,0 +1,11 @@
 
 
 
 
 
 
 
 
 
 
 
 
1
+ from HPRO import PW2AOkernel
2
+
3
+ kernel = PW2AOkernel(
4
+ lcao_interface='siesta',
5
+ lcaodata_root='/capstor/scratch/cscs/apoliukh/qe-agent/epc_ml_zg/aobasis',
6
+ hrdata_interface='qe-bgw',
7
+ vscdir='./VSC',
8
+ upfdir='/capstor/scratch/cscs/apoliukh/qe-agent/epc_ml_zg/pseudos',
9
+ ecutwfn=30,
10
+ )
11
+ kernel.run_pw2ao_rs('./aohamiltonian')
releases/diamond_hpro_deeph_v2/data/zg_train_a1_clean/disp-069/meta.json ADDED
@@ -0,0 +1,15 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ {
2
+ "idx": 69,
3
+ "local_idx": 9,
4
+ "prefix": "diamond-zg-A1-069",
5
+ "amplitude_ang": 0.01,
6
+ "n_atoms": 54,
7
+ "sc_size": [
8
+ 3,
9
+ 3,
10
+ 3
11
+ ],
12
+ "lattice_ang": 3.5473290000000004,
13
+ "seed": 1042,
14
+ "clean_axis": "more_same_distribution_data"
15
+ }
releases/diamond_hpro_deeph_v2/data/zg_train_a1_clean/disp-069/meta.release.json ADDED
@@ -0,0 +1,8 @@
 
 
 
 
 
 
 
 
 
1
+ {
2
+ "dataset": "zg_train_a1_clean",
3
+ "frame_id": "disp-069",
4
+ "has_aohamiltonian": true,
5
+ "has_ki_hamiltonian": false,
6
+ "has_overlap": true,
7
+ "source_path": "/capstor/scratch/cscs/apoliukh/qe-agent/epc_ml_zg_A1_clean/data/disp-069"
8
+ }
releases/diamond_hpro_deeph_v2/data/zg_train_a1_clean/disp-069/nscf.in ADDED
@@ -0,0 +1,90 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ &CONTROL
2
+ calculation = 'nscf'
3
+ prefix = 'diamond-zg-A1-069'
4
+ pseudo_dir = '/capstor/scratch/cscs/apoliukh/qe-agent/studies/zg-test/pp'
5
+ outdir = './tmp'
6
+ /
7
+
8
+ &SYSTEM
9
+ ibrav = 0
10
+ nat = 54
11
+ ntyp = 1
12
+ ecutwfc = 80.0
13
+ nbnd = 120
14
+ /
15
+
16
+ &ELECTRONS
17
+ diagonalization = 'david'
18
+ mixing_mode = 'plain'
19
+ mixing_beta = 0.70
20
+ conv_thr = 1.0d-14
21
+ /
22
+
23
+ CELL_PARAMETERS angstrom
24
+ 0.0000000000 5.3209935000 5.3209935000
25
+ 5.3209935000 0.0000000000 5.3209935000
26
+ 5.3209935000 5.3209935000 0.0000000000
27
+
28
+ ATOMIC_SPECIES
29
+ C 12.011 C-PBE-NLCC.upf
30
+
31
+ ATOMIC_POSITIONS crystal
32
+ C 0.999914915492 0.998908444924 0.999856942816
33
+ C 0.081950969272 0.083327204846 0.081358691706
34
+ C 0.000372534643 0.999042058930 0.333507918677
35
+ C 0.083959737456 0.084215315971 0.417296657318
36
+ C 0.000314071121 0.997753039935 0.668097300037
37
+ C 0.087055263423 0.081524371819 0.747660691850
38
+ C 0.997843033069 0.336363454859 0.000744970193
39
+ C 0.081306710434 0.417966208995 0.084105210784
40
+ C 0.999326985351 0.333568018618 0.334328987609
41
+ C 0.085613840079 0.418442550007 0.414488702246
42
+ C 0.997634196563 0.331247355508 0.669296571629
43
+ C 0.082447122362 0.415271284625 0.750760960542
44
+ C 0.999138016424 0.665786824797 0.002124160464
45
+ C 0.081631507770 0.752746248509 0.080995947354
46
+ C 0.002774852329 0.666376751925 0.331877526645
47
+ C 0.083827780686 0.747764739308 0.418664530188
48
+ C 0.997475210440 0.667271919452 0.667259671613
49
+ C 0.084524633436 0.752062469094 0.746138041222
50
+ C 0.335930084231 0.001462146501 0.997453431648
51
+ C 0.417332802194 0.086892651645 0.081710105446
52
+ C 0.335682252702 0.999298422660 0.333346732083
53
+ C 0.415889090771 0.083077193179 0.418153226211
54
+ C 0.335240755198 0.002296572446 0.664229638631
55
+ C 0.418385417539 0.083855231671 0.749466271043
56
+ C 0.332029766477 0.333286950279 0.001331017160
57
+ C 0.417997704324 0.415700684893 0.081749872564
58
+ C 0.332609085453 0.329421712289 0.336541753693
59
+ C 0.415931237143 0.416571712985 0.415383232360
60
+ C 0.332589080157 0.336421882183 0.667993028899
61
+ C 0.418292305741 0.413338007874 0.749837093542
62
+ C 0.333386495894 0.666177065846 0.000104817979
63
+ C 0.417306290588 0.747676355068 0.086094533164
64
+ C 0.335081311366 0.662996945750 0.333202877319
65
+ C 0.417697151915 0.749071181104 0.415530934583
66
+ C 0.336295722574 0.665946224064 0.667988958254
67
+ C 0.416207399161 0.751414301352 0.750373180880
68
+ C 0.664203242774 0.000522510394 0.000058431958
69
+ C 0.748384951537 0.085057316874 0.083948770584
70
+ C 0.668386187604 0.000537858664 0.330513925642
71
+ C 0.749032992618 0.082072131610 0.416467735725
72
+ C 0.665434193145 0.002786579715 0.665335410330
73
+ C 0.749941683986 0.082411239444 0.753586655528
74
+ C 0.663853244544 0.334028539527 0.000271203337
75
+ C 0.751572905602 0.415036642329 0.083471864311
76
+ C 0.665529664509 0.333819653630 0.334689417008
77
+ C 0.751262931966 0.416223465960 0.418197300023
78
+ C 0.668702310976 0.331422876828 0.666929184587
79
+ C 0.749944531324 0.418109756867 0.750840511993
80
+ C 0.666780902712 0.666735852950 0.000681140519
81
+ C 0.751118466339 0.749104688635 0.083217448241
82
+ C 0.666312275207 0.666137818234 0.333391184004
83
+ C 0.751457424027 0.749058093871 0.418786959916
84
+ C 0.665724462862 0.664111842053 0.668649473232
85
+ C 0.750700191845 0.749159353886 0.749170008094
86
+
87
+ K_POINTS crystal
88
+ 2
89
+ 0.0000000000 0.0000000000 0.0000000000 1.0
90
+ 0.0000000000 1.0800000000 1.0800000000 1.0
releases/diamond_hpro_deeph_v2/data/zg_train_a1_clean/disp-069/pw2bgw.in ADDED
@@ -0,0 +1,7 @@
 
 
 
 
 
 
 
 
1
+ &input_pw2bgw
2
+ prefix = 'diamond-zg-A1-069'
3
+ outdir = './tmp'
4
+ real_or_complex = 2
5
+ vscg_flag = .true.
6
+ vscg_file = 'VSC'
7
+ /
releases/diamond_hpro_deeph_v2/data/zg_train_a1_clean/disp-069/scf.in ADDED
@@ -0,0 +1,87 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ &CONTROL
2
+ calculation = 'scf'
3
+ prefix = 'diamond-zg-A1-069'
4
+ pseudo_dir = '/capstor/scratch/cscs/apoliukh/qe-agent/studies/zg-test/pp'
5
+ outdir = './tmp'
6
+ /
7
+
8
+ &SYSTEM
9
+ ibrav = 0
10
+ nat = 54
11
+ ntyp = 1
12
+ ecutwfc = 80.0
13
+ /
14
+
15
+ &ELECTRONS
16
+ diagonalization = 'david'
17
+ mixing_mode = 'plain'
18
+ mixing_beta = 0.70
19
+ conv_thr = 1.0d-14
20
+ /
21
+
22
+ CELL_PARAMETERS angstrom
23
+ 0.0000000000 5.3209935000 5.3209935000
24
+ 5.3209935000 0.0000000000 5.3209935000
25
+ 5.3209935000 5.3209935000 0.0000000000
26
+
27
+ ATOMIC_SPECIES
28
+ C 12.011 C-PBE-NLCC.upf
29
+
30
+ ATOMIC_POSITIONS crystal
31
+ C 0.999914915492 0.998908444924 0.999856942816
32
+ C 0.081950969272 0.083327204846 0.081358691706
33
+ C 0.000372534643 0.999042058930 0.333507918677
34
+ C 0.083959737456 0.084215315971 0.417296657318
35
+ C 0.000314071121 0.997753039935 0.668097300037
36
+ C 0.087055263423 0.081524371819 0.747660691850
37
+ C 0.997843033069 0.336363454859 0.000744970193
38
+ C 0.081306710434 0.417966208995 0.084105210784
39
+ C 0.999326985351 0.333568018618 0.334328987609
40
+ C 0.085613840079 0.418442550007 0.414488702246
41
+ C 0.997634196563 0.331247355508 0.669296571629
42
+ C 0.082447122362 0.415271284625 0.750760960542
43
+ C 0.999138016424 0.665786824797 0.002124160464
44
+ C 0.081631507770 0.752746248509 0.080995947354
45
+ C 0.002774852329 0.666376751925 0.331877526645
46
+ C 0.083827780686 0.747764739308 0.418664530188
47
+ C 0.997475210440 0.667271919452 0.667259671613
48
+ C 0.084524633436 0.752062469094 0.746138041222
49
+ C 0.335930084231 0.001462146501 0.997453431648
50
+ C 0.417332802194 0.086892651645 0.081710105446
51
+ C 0.335682252702 0.999298422660 0.333346732083
52
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releases/diamond_hpro_deeph_v2/data/zg_train_a1_clean/disp-070/nscf.in ADDED
@@ -0,0 +1,90 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ &CONTROL
2
+ calculation = 'nscf'
3
+ prefix = 'diamond-zg-A1-070'
4
+ pseudo_dir = '/capstor/scratch/cscs/apoliukh/qe-agent/studies/zg-test/pp'
5
+ outdir = './tmp'
6
+ /
7
+
8
+ &SYSTEM
9
+ ibrav = 0
10
+ nat = 54
11
+ ntyp = 1
12
+ ecutwfc = 80.0
13
+ nbnd = 120
14
+ /
15
+
16
+ &ELECTRONS
17
+ diagonalization = 'david'
18
+ mixing_mode = 'plain'
19
+ mixing_beta = 0.70
20
+ conv_thr = 1.0d-14
21
+ /
22
+
23
+ CELL_PARAMETERS angstrom
24
+ 0.0000000000 5.3209935000 5.3209935000
25
+ 5.3209935000 0.0000000000 5.3209935000
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+ 5.3209935000 5.3209935000 0.0000000000
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28
+ ATOMIC_SPECIES
29
+ C 12.011 C-PBE-NLCC.upf
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+
31
+ ATOMIC_POSITIONS crystal
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releases/diamond_hpro_deeph_v2/data/zg_train_a1_clean/disp-070/pw2bgw.in ADDED
@@ -0,0 +1,7 @@
 
 
 
 
 
 
 
 
1
+ &input_pw2bgw
2
+ prefix = 'diamond-zg-A1-070'
3
+ outdir = './tmp'
4
+ real_or_complex = 2
5
+ vscg_flag = .true.
6
+ vscg_file = 'VSC'
7
+ /
releases/diamond_hpro_deeph_v2/data/zg_train_a1_clean/disp-081/calc.py ADDED
@@ -0,0 +1,11 @@
 
 
 
 
 
 
 
 
 
 
 
 
1
+ from HPRO import PW2AOkernel
2
+
3
+ kernel = PW2AOkernel(
4
+ lcao_interface='siesta',
5
+ lcaodata_root='/capstor/scratch/cscs/apoliukh/qe-agent/epc_ml_zg/aobasis',
6
+ hrdata_interface='qe-bgw',
7
+ vscdir='./VSC',
8
+ upfdir='/capstor/scratch/cscs/apoliukh/qe-agent/epc_ml_zg/pseudos',
9
+ ecutwfn=30,
10
+ )
11
+ kernel.run_pw2ao_rs('./aohamiltonian')
releases/diamond_hpro_deeph_v2/data/zg_train_a1_clean/disp-081/meta.release.json ADDED
@@ -0,0 +1,8 @@
 
 
 
 
 
 
 
 
 
1
+ {
2
+ "dataset": "zg_train_a1_clean",
3
+ "frame_id": "disp-081",
4
+ "has_aohamiltonian": true,
5
+ "has_ki_hamiltonian": false,
6
+ "has_overlap": true,
7
+ "source_path": "/capstor/scratch/cscs/apoliukh/qe-agent/epc_ml_zg_A1_clean/data/disp-081"
8
+ }
releases/diamond_hpro_deeph_v2/data/zg_train_a1_clean/disp-081/nscf.in ADDED
@@ -0,0 +1,90 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ &CONTROL
2
+ calculation = 'nscf'
3
+ prefix = 'diamond-zg-A1-081'
4
+ pseudo_dir = '/capstor/scratch/cscs/apoliukh/qe-agent/studies/zg-test/pp'
5
+ outdir = './tmp'
6
+ /
7
+
8
+ &SYSTEM
9
+ ibrav = 0
10
+ nat = 54
11
+ ntyp = 1
12
+ ecutwfc = 80.0
13
+ nbnd = 120
14
+ /
15
+
16
+ &ELECTRONS
17
+ diagonalization = 'david'
18
+ mixing_mode = 'plain'
19
+ mixing_beta = 0.70
20
+ conv_thr = 1.0d-14
21
+ /
22
+
23
+ CELL_PARAMETERS angstrom
24
+ 0.0000000000 5.3209935000 5.3209935000
25
+ 5.3209935000 0.0000000000 5.3209935000
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+ 5.3209935000 5.3209935000 0.0000000000
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+
28
+ ATOMIC_SPECIES
29
+ C 12.011 C-PBE-NLCC.upf
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+
31
+ ATOMIC_POSITIONS crystal
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releases/diamond_hpro_deeph_v2/data/zg_train_a1_clean/disp-081/pw2bgw.in ADDED
@@ -0,0 +1,7 @@
 
 
 
 
 
 
 
 
1
+ &input_pw2bgw
2
+ prefix = 'diamond-zg-A1-081'
3
+ outdir = './tmp'
4
+ real_or_complex = 2
5
+ vscg_flag = .true.
6
+ vscg_file = 'VSC'
7
+ /
releases/diamond_hpro_deeph_v2/data/zg_train_a1_clean/disp-081/scf.in ADDED
@@ -0,0 +1,87 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ &CONTROL
2
+ calculation = 'scf'
3
+ prefix = 'diamond-zg-A1-081'
4
+ pseudo_dir = '/capstor/scratch/cscs/apoliukh/qe-agent/studies/zg-test/pp'
5
+ outdir = './tmp'
6
+ /
7
+
8
+ &SYSTEM
9
+ ibrav = 0
10
+ nat = 54
11
+ ntyp = 1
12
+ ecutwfc = 80.0
13
+ /
14
+
15
+ &ELECTRONS
16
+ diagonalization = 'david'
17
+ mixing_mode = 'plain'
18
+ mixing_beta = 0.70
19
+ conv_thr = 1.0d-14
20
+ /
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+
22
+ CELL_PARAMETERS angstrom
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+ ATOMIC_SPECIES
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+ C 12.011 C-PBE-NLCC.upf
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+ ATOMIC_POSITIONS crystal
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+ 2 2 2 0 0 0
releases/diamond_hpro_deeph_v2/data/zg_train_a1_clean/disp-084/calc.py ADDED
@@ -0,0 +1,11 @@
 
 
 
 
 
 
 
 
 
 
 
 
1
+ from HPRO import PW2AOkernel
2
+
3
+ kernel = PW2AOkernel(
4
+ lcao_interface='siesta',
5
+ lcaodata_root='/capstor/scratch/cscs/apoliukh/qe-agent/epc_ml_zg/aobasis',
6
+ hrdata_interface='qe-bgw',
7
+ vscdir='./VSC',
8
+ upfdir='/capstor/scratch/cscs/apoliukh/qe-agent/epc_ml_zg/pseudos',
9
+ ecutwfn=30,
10
+ )
11
+ kernel.run_pw2ao_rs('./aohamiltonian')
releases/diamond_hpro_deeph_v2/data/zg_train_a1_clean/disp-084/meta.json ADDED
@@ -0,0 +1,15 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ {
2
+ "idx": 84,
3
+ "local_idx": 24,
4
+ "prefix": "diamond-zg-A1-084",
5
+ "amplitude_ang": 0.03,
6
+ "n_atoms": 54,
7
+ "sc_size": [
8
+ 3,
9
+ 3,
10
+ 3
11
+ ],
12
+ "lattice_ang": 3.5473290000000004,
13
+ "seed": 1042,
14
+ "clean_axis": "more_same_distribution_data"
15
+ }
releases/diamond_hpro_deeph_v2/data/zg_train_a1_clean/disp-084/meta.release.json ADDED
@@ -0,0 +1,8 @@
 
 
 
 
 
 
 
 
 
1
+ {
2
+ "dataset": "zg_train_a1_clean",
3
+ "frame_id": "disp-084",
4
+ "has_aohamiltonian": true,
5
+ "has_ki_hamiltonian": false,
6
+ "has_overlap": true,
7
+ "source_path": "/capstor/scratch/cscs/apoliukh/qe-agent/epc_ml_zg_A1_clean/data/disp-084"
8
+ }
releases/diamond_hpro_deeph_v2/data/zg_train_a1_clean/disp-084/nscf.in ADDED
@@ -0,0 +1,90 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ &CONTROL
2
+ calculation = 'nscf'
3
+ prefix = 'diamond-zg-A1-084'
4
+ pseudo_dir = '/capstor/scratch/cscs/apoliukh/qe-agent/studies/zg-test/pp'
5
+ outdir = './tmp'
6
+ /
7
+
8
+ &SYSTEM
9
+ ibrav = 0
10
+ nat = 54
11
+ ntyp = 1
12
+ ecutwfc = 80.0
13
+ nbnd = 120
14
+ /
15
+
16
+ &ELECTRONS
17
+ diagonalization = 'david'
18
+ mixing_mode = 'plain'
19
+ mixing_beta = 0.70
20
+ conv_thr = 1.0d-14
21
+ /
22
+
23
+ CELL_PARAMETERS angstrom
24
+ 0.0000000000 5.3209935000 5.3209935000
25
+ 5.3209935000 0.0000000000 5.3209935000
26
+ 5.3209935000 5.3209935000 0.0000000000
27
+
28
+ ATOMIC_SPECIES
29
+ C 12.011 C-PBE-NLCC.upf
30
+
31
+ ATOMIC_POSITIONS crystal
32
+ C 0.006435473383 0.993446533547 0.004559433991
33
+ C 0.086824853497 0.079097137148 0.084773997123
34
+ C 0.999064065948 0.004513340991 0.323667420140
35
+ C 0.087142086807 0.090539311264 0.403442451519
36
+ C 0.006656461155 0.007524644672 0.659989474527
37
+ C 0.076610326207 0.077745647192 0.764850981503
38
+ C 0.002631886763 0.326497365961 0.005485793265
39
+ C 0.085480582184 0.410950286677 0.087640716774
40
+ C 0.011653862819 0.327644210261 0.326863372278
41
+ C 0.083497826698 0.424494690044 0.414641602388
42
+ C 0.004558871516 0.333005370013 0.666004327133
43
+ C 0.079309527413 0.420758437862 0.753730526635
44
+ C 0.004146415232 0.667683942370 0.998185417303
45
+ C 0.089660094891 0.751707401793 0.075610766816
46
+ C 0.003885071108 0.661010519423 0.335217672702
47
+ C 0.092584363040 0.748237470949 0.413986926413
48
+ C 0.006141184596 0.664582471431 0.669661153318
49
+ C 0.083306791175 0.756562145462 0.748753118567
50
+ C 0.336547567631 0.002975053713 0.999385117176
51
+ C 0.415315622173 0.077313398188 0.094111896423
52
+ C 0.331971888919 0.002983227684 0.328967656168
53
+ C 0.412998588464 0.076628798759 0.412461569518
54
+ C 0.340596961415 0.992305185347 0.661531901970
55
+ C 0.419081497311 0.074986830014 0.749746011317
56
+ C 0.336463985147 0.333442640566 0.997366031060
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+ C 0.407483526423 0.426935595489 0.080219250760
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+ C 0.330391109486 0.327745934202 0.339943879740
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+ C 0.422404780128 0.412406510229 0.420411825266
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+ C 0.327239573897 0.336672804676 0.666432224827
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+ C 0.328539942897 0.667757940545 0.998129703769
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+ C 0.333052531387 0.663289437448 0.671592416835
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+ C 0.409910294836 0.751941193483 0.756185790301
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+ C 0.668173630903 0.998666443228 0.001742497496
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+ C 0.750986794921 0.077749525167 0.086985339653
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+ C 0.664824977678 0.995739128878 0.337459179320
71
+ C 0.758275426220 0.086335540500 0.415684300124
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+ C 0.670446462735 0.994900986637 0.669404009176
73
+ C 0.746976602523 0.085727539290 0.748831116757
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+ C 0.660131709144 0.338888539087 0.003725457283
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+ C 0.757558021476 0.412486232637 0.076445705149
76
+ C 0.670499406379 0.329656596882 0.339371359618
77
+ C 0.744527287422 0.417102369436 0.416596647016
78
+ C 0.667438383083 0.331068229446 0.672446583691
79
+ C 0.754445338316 0.417506749772 0.745425390361
80
+ C 0.668415193066 0.668849053902 0.994478412627
81
+ C 0.749672384412 0.752034913204 0.086430809427
82
+ C 0.671732774472 0.664993802065 0.334415043556
83
+ C 0.759112555179 0.749914209638 0.412283326591
84
+ C 0.667747233237 0.667868564664 0.662057205268
85
+ C 0.748692374292 0.756380063246 0.748748144750
86
+
87
+ K_POINTS crystal
88
+ 2
89
+ 0.0000000000 0.0000000000 0.0000000000 1.0
90
+ 0.0000000000 1.0800000000 1.0800000000 1.0
releases/diamond_hpro_deeph_v2/data/zg_train_a1_clean/disp-084/pw2bgw.in ADDED
@@ -0,0 +1,7 @@
 
 
 
 
 
 
 
 
1
+ &input_pw2bgw
2
+ prefix = 'diamond-zg-A1-084'
3
+ outdir = './tmp'
4
+ real_or_complex = 2
5
+ vscg_flag = .true.
6
+ vscg_file = 'VSC'
7
+ /
releases/diamond_hpro_deeph_v2/data/zg_train_a1_clean/disp-084/scf.in ADDED
@@ -0,0 +1,87 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ &CONTROL
2
+ calculation = 'scf'
3
+ prefix = 'diamond-zg-A1-084'
4
+ pseudo_dir = '/capstor/scratch/cscs/apoliukh/qe-agent/studies/zg-test/pp'
5
+ outdir = './tmp'
6
+ /
7
+
8
+ &SYSTEM
9
+ ibrav = 0
10
+ nat = 54
11
+ ntyp = 1
12
+ ecutwfc = 80.0
13
+ /
14
+
15
+ &ELECTRONS
16
+ diagonalization = 'david'
17
+ mixing_mode = 'plain'
18
+ mixing_beta = 0.70
19
+ conv_thr = 1.0d-14
20
+ /
21
+
22
+ CELL_PARAMETERS angstrom
23
+ 0.0000000000 5.3209935000 5.3209935000
24
+ 5.3209935000 0.0000000000 5.3209935000
25
+ 5.3209935000 5.3209935000 0.0000000000
26
+
27
+ ATOMIC_SPECIES
28
+ C 12.011 C-PBE-NLCC.upf
29
+
30
+ ATOMIC_POSITIONS crystal
31
+ C 0.006435473383 0.993446533547 0.004559433991
32
+ C 0.086824853497 0.079097137148 0.084773997123
33
+ C 0.999064065948 0.004513340991 0.323667420140
34
+ C 0.087142086807 0.090539311264 0.403442451519
35
+ C 0.006656461155 0.007524644672 0.659989474527
36
+ C 0.076610326207 0.077745647192 0.764850981503
37
+ C 0.002631886763 0.326497365961 0.005485793265
38
+ C 0.085480582184 0.410950286677 0.087640716774
39
+ C 0.011653862819 0.327644210261 0.326863372278
40
+ C 0.083497826698 0.424494690044 0.414641602388
41
+ C 0.004558871516 0.333005370013 0.666004327133
42
+ C 0.079309527413 0.420758437862 0.753730526635
43
+ C 0.004146415232 0.667683942370 0.998185417303
44
+ C 0.089660094891 0.751707401793 0.075610766816
45
+ C 0.003885071108 0.661010519423 0.335217672702
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+ C 0.092584363040 0.748237470949 0.413986926413
47
+ C 0.006141184596 0.664582471431 0.669661153318
48
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+ C 0.336547567631 0.002975053713 0.999385117176
50
+ C 0.415315622173 0.077313398188 0.094111896423
51
+ C 0.331971888919 0.002983227684 0.328967656168
52
+ C 0.412998588464 0.076628798759 0.412461569518
53
+ C 0.340596961415 0.992305185347 0.661531901970
54
+ C 0.419081497311 0.074986830014 0.749746011317
55
+ C 0.336463985147 0.333442640566 0.997366031060
56
+ C 0.407483526423 0.426935595489 0.080219250760
57
+ C 0.330391109486 0.327745934202 0.339943879740
58
+ C 0.422404780128 0.412406510229 0.420411825266
59
+ C 0.327239573897 0.336672804676 0.666432224827
60
+ C 0.414205167424 0.408937318512 0.754415653755
61
+ C 0.328539942897 0.667757940545 0.998129703769
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66
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70
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72
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73
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79
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80
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81
+ C 0.671732774472 0.664993802065 0.334415043556
82
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83
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84
+ C 0.748692374292 0.756380063246 0.748748144750
85
+
86
+ K_POINTS automatic
87
+ 2 2 2 0 0 0
releases/diamond_hpro_deeph_v2/data/zg_train_a1_clean/disp-086/calc.py ADDED
@@ -0,0 +1,11 @@
 
 
 
 
 
 
 
 
 
 
 
 
1
+ from HPRO import PW2AOkernel
2
+
3
+ kernel = PW2AOkernel(
4
+ lcao_interface='siesta',
5
+ lcaodata_root='/capstor/scratch/cscs/apoliukh/qe-agent/epc_ml_zg/aobasis',
6
+ hrdata_interface='qe-bgw',
7
+ vscdir='./VSC',
8
+ upfdir='/capstor/scratch/cscs/apoliukh/qe-agent/epc_ml_zg/pseudos',
9
+ ecutwfn=30,
10
+ )
11
+ kernel.run_pw2ao_rs('./aohamiltonian')
releases/diamond_hpro_deeph_v2/data/zg_train_a1_clean/disp-086/meta.json ADDED
@@ -0,0 +1,15 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ {
2
+ "idx": 86,
3
+ "local_idx": 26,
4
+ "prefix": "diamond-zg-A1-086",
5
+ "amplitude_ang": 0.03,
6
+ "n_atoms": 54,
7
+ "sc_size": [
8
+ 3,
9
+ 3,
10
+ 3
11
+ ],
12
+ "lattice_ang": 3.5473290000000004,
13
+ "seed": 1042,
14
+ "clean_axis": "more_same_distribution_data"
15
+ }
releases/diamond_hpro_deeph_v2/data/zg_train_a1_clean/disp-086/meta.release.json ADDED
@@ -0,0 +1,8 @@
 
 
 
 
 
 
 
 
 
1
+ {
2
+ "dataset": "zg_train_a1_clean",
3
+ "frame_id": "disp-086",
4
+ "has_aohamiltonian": true,
5
+ "has_ki_hamiltonian": false,
6
+ "has_overlap": true,
7
+ "source_path": "/capstor/scratch/cscs/apoliukh/qe-agent/epc_ml_zg_A1_clean/data/disp-086"
8
+ }
releases/diamond_hpro_deeph_v2/data/zg_train_a1_clean/disp-086/nscf.in ADDED
@@ -0,0 +1,90 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ &CONTROL
2
+ calculation = 'nscf'
3
+ prefix = 'diamond-zg-A1-086'
4
+ pseudo_dir = '/capstor/scratch/cscs/apoliukh/qe-agent/studies/zg-test/pp'
5
+ outdir = './tmp'
6
+ /
7
+
8
+ &SYSTEM
9
+ ibrav = 0
10
+ nat = 54
11
+ ntyp = 1
12
+ ecutwfc = 80.0
13
+ nbnd = 120
14
+ /
15
+
16
+ &ELECTRONS
17
+ diagonalization = 'david'
18
+ mixing_mode = 'plain'
19
+ mixing_beta = 0.70
20
+ conv_thr = 1.0d-14
21
+ /
22
+
23
+ CELL_PARAMETERS angstrom
24
+ 0.0000000000 5.3209935000 5.3209935000
25
+ 5.3209935000 0.0000000000 5.3209935000
26
+ 5.3209935000 5.3209935000 0.0000000000
27
+
28
+ ATOMIC_SPECIES
29
+ C 12.011 C-PBE-NLCC.upf
30
+
31
+ ATOMIC_POSITIONS crystal
32
+ C 0.998160683080 0.995493391328 0.997576639822
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releases/diamond_hpro_deeph_v2/data/zg_train_a1_clean/disp-086/pw2bgw.in ADDED
@@ -0,0 +1,7 @@
 
 
 
 
 
 
 
 
1
+ &input_pw2bgw
2
+ prefix = 'diamond-zg-A1-086'
3
+ outdir = './tmp'
4
+ real_or_complex = 2
5
+ vscg_flag = .true.
6
+ vscg_file = 'VSC'
7
+ /
releases/diamond_hpro_deeph_v2/data/zg_train_a1_clean/disp-086/scf.in ADDED
@@ -0,0 +1,87 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ &CONTROL
2
+ calculation = 'scf'
3
+ prefix = 'diamond-zg-A1-086'
4
+ pseudo_dir = '/capstor/scratch/cscs/apoliukh/qe-agent/studies/zg-test/pp'
5
+ outdir = './tmp'
6
+ /
7
+
8
+ &SYSTEM
9
+ ibrav = 0
10
+ nat = 54
11
+ ntyp = 1
12
+ ecutwfc = 80.0
13
+ /
14
+
15
+ &ELECTRONS
16
+ diagonalization = 'david'
17
+ mixing_mode = 'plain'
18
+ mixing_beta = 0.70
19
+ conv_thr = 1.0d-14
20
+ /
21
+
22
+ CELL_PARAMETERS angstrom
23
+ 0.0000000000 5.3209935000 5.3209935000
24
+ 5.3209935000 0.0000000000 5.3209935000
25
+ 5.3209935000 5.3209935000 0.0000000000
26
+
27
+ ATOMIC_SPECIES
28
+ C 12.011 C-PBE-NLCC.upf
29
+
30
+ ATOMIC_POSITIONS crystal
31
+ C 0.998160683080 0.995493391328 0.997576639822
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+
86
+ K_POINTS automatic
87
+ 2 2 2 0 0 0
releases/diamond_hpro_deeph_v2/data/zg_train_a1_clean/disp-088/calc.py ADDED
@@ -0,0 +1,11 @@
 
 
 
 
 
 
 
 
 
 
 
 
1
+ from HPRO import PW2AOkernel
2
+
3
+ kernel = PW2AOkernel(
4
+ lcao_interface='siesta',
5
+ lcaodata_root='/capstor/scratch/cscs/apoliukh/qe-agent/epc_ml_zg/aobasis',
6
+ hrdata_interface='qe-bgw',
7
+ vscdir='./VSC',
8
+ upfdir='/capstor/scratch/cscs/apoliukh/qe-agent/epc_ml_zg/pseudos',
9
+ ecutwfn=30,
10
+ )
11
+ kernel.run_pw2ao_rs('./aohamiltonian')
releases/diamond_hpro_deeph_v2/data/zg_train_a1_clean/disp-088/meta.json ADDED
@@ -0,0 +1,15 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ {
2
+ "idx": 88,
3
+ "local_idx": 28,
4
+ "prefix": "diamond-zg-A1-088",
5
+ "amplitude_ang": 0.03,
6
+ "n_atoms": 54,
7
+ "sc_size": [
8
+ 3,
9
+ 3,
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+ 3
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+ ],
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+ "lattice_ang": 3.5473290000000004,
13
+ "seed": 1042,
14
+ "clean_axis": "more_same_distribution_data"
15
+ }
releases/diamond_hpro_deeph_v2/data/zg_train_a1_clean/disp-088/meta.release.json ADDED
@@ -0,0 +1,8 @@
 
 
 
 
 
 
 
 
 
1
+ {
2
+ "dataset": "zg_train_a1_clean",
3
+ "frame_id": "disp-088",
4
+ "has_aohamiltonian": true,
5
+ "has_ki_hamiltonian": false,
6
+ "has_overlap": true,
7
+ "source_path": "/capstor/scratch/cscs/apoliukh/qe-agent/epc_ml_zg_A1_clean/data/disp-088"
8
+ }
releases/diamond_hpro_deeph_v2/data/zg_train_a1_clean/disp-088/nscf.in ADDED
@@ -0,0 +1,90 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ &CONTROL
2
+ calculation = 'nscf'
3
+ prefix = 'diamond-zg-A1-088'
4
+ pseudo_dir = '/capstor/scratch/cscs/apoliukh/qe-agent/studies/zg-test/pp'
5
+ outdir = './tmp'
6
+ /
7
+
8
+ &SYSTEM
9
+ ibrav = 0
10
+ nat = 54
11
+ ntyp = 1
12
+ ecutwfc = 80.0
13
+ nbnd = 120
14
+ /
15
+
16
+ &ELECTRONS
17
+ diagonalization = 'david'
18
+ mixing_mode = 'plain'
19
+ mixing_beta = 0.70
20
+ conv_thr = 1.0d-14
21
+ /
22
+
23
+ CELL_PARAMETERS angstrom
24
+ 0.0000000000 5.3209935000 5.3209935000
25
+ 5.3209935000 0.0000000000 5.3209935000
26
+ 5.3209935000 5.3209935000 0.0000000000
27
+
28
+ ATOMIC_SPECIES
29
+ C 12.011 C-PBE-NLCC.upf
30
+
31
+ ATOMIC_POSITIONS crystal
32
+ C 0.001908698191 0.998727089662 0.002975587213
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releases/diamond_hpro_deeph_v2/data/zg_train_a1_clean/disp-088/pw2bgw.in ADDED
@@ -0,0 +1,7 @@
 
 
 
 
 
 
 
 
1
+ &input_pw2bgw
2
+ prefix = 'diamond-zg-A1-088'
3
+ outdir = './tmp'
4
+ real_or_complex = 2
5
+ vscg_flag = .true.
6
+ vscg_file = 'VSC'
7
+ /
releases/diamond_hpro_deeph_v2/data/zg_train_a1_clean/disp-088/scf.in ADDED
@@ -0,0 +1,87 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ &CONTROL
2
+ calculation = 'scf'
3
+ prefix = 'diamond-zg-A1-088'
4
+ pseudo_dir = '/capstor/scratch/cscs/apoliukh/qe-agent/studies/zg-test/pp'
5
+ outdir = './tmp'
6
+ /
7
+
8
+ &SYSTEM
9
+ ibrav = 0
10
+ nat = 54
11
+ ntyp = 1
12
+ ecutwfc = 80.0
13
+ /
14
+
15
+ &ELECTRONS
16
+ diagonalization = 'david'
17
+ mixing_mode = 'plain'
18
+ mixing_beta = 0.70
19
+ conv_thr = 1.0d-14
20
+ /
21
+
22
+ CELL_PARAMETERS angstrom
23
+ 0.0000000000 5.3209935000 5.3209935000
24
+ 5.3209935000 0.0000000000 5.3209935000
25
+ 5.3209935000 5.3209935000 0.0000000000
26
+
27
+ ATOMIC_SPECIES
28
+ C 12.011 C-PBE-NLCC.upf
29
+
30
+ ATOMIC_POSITIONS crystal
31
+ C 0.001908698191 0.998727089662 0.002975587213
32
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86
+ K_POINTS automatic
87
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releases/diamond_hpro_deeph_v2/data/zg_train_a1_clean/disp-101/calc.py ADDED
@@ -0,0 +1,11 @@
 
 
 
 
 
 
 
 
 
 
 
 
1
+ from HPRO import PW2AOkernel
2
+
3
+ kernel = PW2AOkernel(
4
+ lcao_interface='siesta',
5
+ lcaodata_root='/capstor/scratch/cscs/apoliukh/qe-agent/epc_ml_zg/aobasis',
6
+ hrdata_interface='qe-bgw',
7
+ vscdir='./VSC',
8
+ upfdir='/capstor/scratch/cscs/apoliukh/qe-agent/epc_ml_zg/pseudos',
9
+ ecutwfn=30,
10
+ )
11
+ kernel.run_pw2ao_rs('./aohamiltonian')
releases/diamond_hpro_deeph_v2/data/zg_train_a1_clean/disp-101/meta.json ADDED
@@ -0,0 +1,15 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ {
2
+ "idx": 101,
3
+ "local_idx": 41,
4
+ "prefix": "diamond-zg-A1-101",
5
+ "amplitude_ang": 0.08,
6
+ "n_atoms": 54,
7
+ "sc_size": [
8
+ 3,
9
+ 3,
10
+ 3
11
+ ],
12
+ "lattice_ang": 3.5473290000000004,
13
+ "seed": 1042,
14
+ "clean_axis": "more_same_distribution_data"
15
+ }
releases/diamond_hpro_deeph_v2/data/zg_train_a1_clean/disp-101/meta.release.json ADDED
@@ -0,0 +1,8 @@
 
 
 
 
 
 
 
 
 
1
+ {
2
+ "dataset": "zg_train_a1_clean",
3
+ "frame_id": "disp-101",
4
+ "has_aohamiltonian": true,
5
+ "has_ki_hamiltonian": false,
6
+ "has_overlap": true,
7
+ "source_path": "/capstor/scratch/cscs/apoliukh/qe-agent/epc_ml_zg_A1_clean/data/disp-101"
8
+ }
releases/diamond_hpro_deeph_v2/data/zg_train_a1_clean/disp-101/nscf.in ADDED
@@ -0,0 +1,90 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ &CONTROL
2
+ calculation = 'nscf'
3
+ prefix = 'diamond-zg-A1-101'
4
+ pseudo_dir = '/capstor/scratch/cscs/apoliukh/qe-agent/studies/zg-test/pp'
5
+ outdir = './tmp'
6
+ /
7
+
8
+ &SYSTEM
9
+ ibrav = 0
10
+ nat = 54
11
+ ntyp = 1
12
+ ecutwfc = 80.0
13
+ nbnd = 120
14
+ /
15
+
16
+ &ELECTRONS
17
+ diagonalization = 'david'
18
+ mixing_mode = 'plain'
19
+ mixing_beta = 0.70
20
+ conv_thr = 1.0d-14
21
+ /
22
+
23
+ CELL_PARAMETERS angstrom
24
+ 0.0000000000 5.3209935000 5.3209935000
25
+ 5.3209935000 0.0000000000 5.3209935000
26
+ 5.3209935000 5.3209935000 0.0000000000
27
+
28
+ ATOMIC_SPECIES
29
+ C 12.011 C-PBE-NLCC.upf
30
+
31
+ ATOMIC_POSITIONS crystal
32
+ C 0.989529115799 0.018409250955 0.995345329904
33
+ C 0.066308301600 0.073541768896 0.112493554512
34
+ C 0.030762619601 0.990324486601 0.307241869832
35
+ C 0.093317935072 0.071887876807 0.429642526327
36
+ C 0.008068055870 0.006892574920 0.672818328767
37
+ C 0.084450773133 0.087294750262 0.751199556282
38
+ C 0.001495879141 0.338488172830 0.015493704870
39
+ C 0.099614214487 0.396375538089 0.066391199534
40
+ C 0.011214463638 0.324659874460 0.333826128672
41
+ C 0.078447772262 0.425465352656 0.408093631770
42
+ C 0.014586025876 0.350006201509 0.655836551137
43
+ C 0.056039906896 0.425856576187 0.747696818775
44
+ C 0.993632177480 0.660310216177 0.004110938465
45
+ C 0.089622871482 0.743606264855 0.069518850998
46
+ C 0.011259397076 0.666172627285 0.334560431196
47
+ C 0.091567047182 0.765020930502 0.400622374499
48
+ C 0.985913160620 0.686273342498 0.670175018740
49
+ C 0.092719928455 0.749003269688 0.743951349533
50
+ C 0.332683516064 0.988657358113 0.012274204750
51
+ C 0.419949514008 0.102604596005 0.079505461047
52
+ C 0.333801056119 0.004045892796 0.337976025596
53
+ C 0.405670065092 0.078210821474 0.426831208464
54
+ C 0.351075124713 0.966368490190 0.672674044773
55
+ C 0.407182029225 0.090925273915 0.752611898407
56
+ C 0.346760366737 0.312503004469 0.988209664149
57
+ C 0.408810369856 0.434726154411 0.070742096109
58
+ C 0.332747939580 0.355620817208 0.342150768255
59
+ C 0.418081089984 0.411356964014 0.413673387457
60
+ C 0.360282386447 0.305181808893 0.678906441494
61
+ C 0.434060038594 0.413500800171 0.750974557449
62
+ C 0.337072700797 0.681462056329 0.993400341918
63
+ C 0.409967318611 0.745314738873 0.092977085058
64
+ C 0.327771946071 0.672472932909 0.341025202458
65
+ C 0.392974195424 0.770992833634 0.424330533573
66
+ C 0.362522266538 0.665225454866 0.652979263875
67
+ C 0.438923007445 0.749935295933 0.750389587365
68
+ C 0.666955860887 0.992912171153 0.007557556385
69
+ C 0.756945026568 0.074104999768 0.080510144331
70
+ C 0.663194637604 0.997723091259 0.348443518595
71
+ C 0.740613801476 0.111925026033 0.402523362533
72
+ C 0.653408165503 0.022921566006 0.660269818888
73
+ C 0.754056407867 0.069551849620 0.749615103796
74
+ C 0.661515622891 0.354248431002 0.000731040127
75
+ C 0.762440828465 0.413444207389 0.089669806416
76
+ C 0.678770580487 0.315519733092 0.322176092902
77
+ C 0.741627916266 0.411113087801 0.430350962805
78
+ C 0.646850136286 0.325528354194 0.705563337059
79
+ C 0.756343668232 0.404475039317 0.748521509307
80
+ C 0.671890061008 0.675048403389 0.992808428995
81
+ C 0.744291821091 0.732663600000 0.087855641240
82
+ C 0.687466439787 0.675882123532 0.317926843092
83
+ C 0.741608888563 0.761877650663 0.422566299654
84
+ C 0.684997550104 0.658069683745 0.665265488695
85
+ C 0.746689150395 0.765050875234 0.755331602901
86
+
87
+ K_POINTS crystal
88
+ 2
89
+ 0.0000000000 0.0000000000 0.0000000000 1.0
90
+ 0.0000000000 1.0800000000 1.0800000000 1.0
releases/diamond_hpro_deeph_v2/data/zg_train_a1_clean/disp-101/pw2bgw.in ADDED
@@ -0,0 +1,7 @@
 
 
 
 
 
 
 
 
1
+ &input_pw2bgw
2
+ prefix = 'diamond-zg-A1-101'
3
+ outdir = './tmp'
4
+ real_or_complex = 2
5
+ vscg_flag = .true.
6
+ vscg_file = 'VSC'
7
+ /
releases/diamond_hpro_deeph_v2/data/zg_train_a1_clean/disp-101/scf.in ADDED
@@ -0,0 +1,87 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ &CONTROL
2
+ calculation = 'scf'
3
+ prefix = 'diamond-zg-A1-101'
4
+ pseudo_dir = '/capstor/scratch/cscs/apoliukh/qe-agent/studies/zg-test/pp'
5
+ outdir = './tmp'
6
+ /
7
+
8
+ &SYSTEM
9
+ ibrav = 0
10
+ nat = 54
11
+ ntyp = 1
12
+ ecutwfc = 80.0
13
+ /
14
+
15
+ &ELECTRONS
16
+ diagonalization = 'david'
17
+ mixing_mode = 'plain'
18
+ mixing_beta = 0.70
19
+ conv_thr = 1.0d-14
20
+ /
21
+
22
+ CELL_PARAMETERS angstrom
23
+ 0.0000000000 5.3209935000 5.3209935000
24
+ 5.3209935000 0.0000000000 5.3209935000
25
+ 5.3209935000 5.3209935000 0.0000000000
26
+
27
+ ATOMIC_SPECIES
28
+ C 12.011 C-PBE-NLCC.upf
29
+
30
+ ATOMIC_POSITIONS crystal
31
+ C 0.989529115799 0.018409250955 0.995345329904
32
+ C 0.066308301600 0.073541768896 0.112493554512
33
+ C 0.030762619601 0.990324486601 0.307241869832
34
+ C 0.093317935072 0.071887876807 0.429642526327
35
+ C 0.008068055870 0.006892574920 0.672818328767
36
+ C 0.084450773133 0.087294750262 0.751199556282
37
+ C 0.001495879141 0.338488172830 0.015493704870
38
+ C 0.099614214487 0.396375538089 0.066391199534
39
+ C 0.011214463638 0.324659874460 0.333826128672
40
+ C 0.078447772262 0.425465352656 0.408093631770
41
+ C 0.014586025876 0.350006201509 0.655836551137
42
+ C 0.056039906896 0.425856576187 0.747696818775
43
+ C 0.993632177480 0.660310216177 0.004110938465
44
+ C 0.089622871482 0.743606264855 0.069518850998
45
+ C 0.011259397076 0.666172627285 0.334560431196
46
+ C 0.091567047182 0.765020930502 0.400622374499
47
+ C 0.985913160620 0.686273342498 0.670175018740
48
+ C 0.092719928455 0.749003269688 0.743951349533
49
+ C 0.332683516064 0.988657358113 0.012274204750
50
+ C 0.419949514008 0.102604596005 0.079505461047
51
+ C 0.333801056119 0.004045892796 0.337976025596
52
+ C 0.405670065092 0.078210821474 0.426831208464
53
+ C 0.351075124713 0.966368490190 0.672674044773
54
+ C 0.407182029225 0.090925273915 0.752611898407
55
+ C 0.346760366737 0.312503004469 0.988209664149
56
+ C 0.408810369856 0.434726154411 0.070742096109
57
+ C 0.332747939580 0.355620817208 0.342150768255
58
+ C 0.418081089984 0.411356964014 0.413673387457
59
+ C 0.360282386447 0.305181808893 0.678906441494
60
+ C 0.434060038594 0.413500800171 0.750974557449
61
+ C 0.337072700797 0.681462056329 0.993400341918
62
+ C 0.409967318611 0.745314738873 0.092977085058
63
+ C 0.327771946071 0.672472932909 0.341025202458
64
+ C 0.392974195424 0.770992833634 0.424330533573
65
+ C 0.362522266538 0.665225454866 0.652979263875
66
+ C 0.438923007445 0.749935295933 0.750389587365
67
+ C 0.666955860887 0.992912171153 0.007557556385
68
+ C 0.756945026568 0.074104999768 0.080510144331
69
+ C 0.663194637604 0.997723091259 0.348443518595
70
+ C 0.740613801476 0.111925026033 0.402523362533
71
+ C 0.653408165503 0.022921566006 0.660269818888
72
+ C 0.754056407867 0.069551849620 0.749615103796
73
+ C 0.661515622891 0.354248431002 0.000731040127
74
+ C 0.762440828465 0.413444207389 0.089669806416
75
+ C 0.678770580487 0.315519733092 0.322176092902
76
+ C 0.741627916266 0.411113087801 0.430350962805
77
+ C 0.646850136286 0.325528354194 0.705563337059
78
+ C 0.756343668232 0.404475039317 0.748521509307
79
+ C 0.671890061008 0.675048403389 0.992808428995
80
+ C 0.744291821091 0.732663600000 0.087855641240
81
+ C 0.687466439787 0.675882123532 0.317926843092
82
+ C 0.741608888563 0.761877650663 0.422566299654
83
+ C 0.684997550104 0.658069683745 0.665265488695
84
+ C 0.746689150395 0.765050875234 0.755331602901
85
+
86
+ K_POINTS automatic
87
+ 2 2 2 0 0 0
releases/diamond_hpro_deeph_v2/data/zg_train_a1_clean/disp-107/calc.py ADDED
@@ -0,0 +1,11 @@
 
 
 
 
 
 
 
 
 
 
 
 
1
+ from HPRO import PW2AOkernel
2
+
3
+ kernel = PW2AOkernel(
4
+ lcao_interface='siesta',
5
+ lcaodata_root='/capstor/scratch/cscs/apoliukh/qe-agent/epc_ml_zg/aobasis',
6
+ hrdata_interface='qe-bgw',
7
+ vscdir='./VSC',
8
+ upfdir='/capstor/scratch/cscs/apoliukh/qe-agent/epc_ml_zg/pseudos',
9
+ ecutwfn=30,
10
+ )
11
+ kernel.run_pw2ao_rs('./aohamiltonian')