File size: 3,492 Bytes
e9e349d | 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123 124 125 126 127 128 129 130 131 132 133 | # NequIP training config for diamond ML interatomic potential
# Trained on 50 displaced 2x2x2 FCC diamond supercells (QE PBE, ecutwfc=60 Ry)
run: [train, test]
cutoff_radius: 5.0 # Angstrom — covers ~5 neighbor shells in diamond
num_layers: 4
l_max: 2 # l=2 for better angular accuracy (diamond has sp3 bonding)
num_features: 32 # 32 is safe for 6GB GPU with l_max=2
model_type_names: [C]
chemical_species: ${model_type_names}
monitored_metric: val0_epoch/weighted_sum
data:
_target_: nequip.data.datamodule.ASEDataModule
seed: 42
split_dataset:
file_path: ${hydra:runtime.cwd}/dataset.xyz
train: 0.8 # 40 train
val: 0.1 # 5 val
test: 0.1 # 5 test
transforms:
- _target_: nequip.data.transforms.ChemicalSpeciesToAtomTypeMapper
model_type_names: ${model_type_names}
- _target_: nequip.data.transforms.NeighborListTransform
r_max: ${cutoff_radius}
train_dataloader:
_target_: torch.utils.data.DataLoader
batch_size: 2
num_workers: 4
shuffle: true
val_dataloader:
_target_: torch.utils.data.DataLoader
batch_size: 10
num_workers: ${data.train_dataloader.num_workers}
test_dataloader: ${data.val_dataloader}
stats_manager:
_target_: nequip.data.CommonDataStatisticsManager
dataloader_kwargs:
batch_size: 10
type_names: ${model_type_names}
trainer:
_target_: lightning.Trainer
accelerator: gpu
enable_checkpointing: true
max_epochs: 2000
log_every_n_steps: 10
logger:
_target_: lightning.pytorch.loggers.CSVLogger
save_dir: ${hydra:runtime.output_dir}
name: nequip_diamond
callbacks:
- _target_: lightning.pytorch.callbacks.EarlyStopping
monitor: ${monitored_metric}
min_delta: 1e-4
patience: 50
- _target_: lightning.pytorch.callbacks.ModelCheckpoint
monitor: ${monitored_metric}
dirpath: ${hydra:runtime.output_dir}
filename: best
save_last: true
- _target_: lightning.pytorch.callbacks.LearningRateMonitor
logging_interval: epoch
training_module:
_target_: nequip.train.EMALightningModule
ema_decay: 0.999
loss:
_target_: nequip.train.EnergyForceLoss
per_atom_energy: true
coeffs:
total_energy: 1.0
forces: 1.0
val_metrics:
_target_: nequip.train.EnergyForceMetrics
coeffs:
total_energy_mae: 1.0
forces_mae: 1.0
train_metrics: ${training_module.val_metrics}
test_metrics: ${training_module.val_metrics}
optimizer:
_target_: torch.optim.Adam
lr: 0.005
lr_scheduler:
scheduler:
_target_: torch.optim.lr_scheduler.ReduceLROnPlateau
factor: 0.5
patience: 20
threshold: 0.01
min_lr: 1e-6
monitor: ${monitored_metric}
interval: epoch
frequency: 1
model:
_target_: nequip.model.NequIPGNNModel
seed: 42
model_dtype: float32
type_names: ${model_type_names}
r_max: ${cutoff_radius}
num_bessels: 8
bessel_trainable: false
polynomial_cutoff_p: 6
num_layers: ${num_layers}
l_max: ${l_max}
parity: true
num_features: ${num_features}
radial_mlp_depth: 2
radial_mlp_width: 64
avg_num_neighbors: ${training_data_stats:num_neighbors_mean}
per_type_energy_scales: ${training_data_stats:per_type_forces_rms}
per_type_energy_shifts: ${training_data_stats:per_atom_energy_mean}
per_type_energy_scales_trainable: false
per_type_energy_shifts_trainable: false
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