Kendrick921 yhayashi1986 commited on
Commit
f2300b7
·
verified ·
0 Parent(s):

Duplicate from yhayashi1986/PolyOmics

Browse files

Co-authored-by: Yoshihiro Hayashi <yhayashi1986@users.noreply.huggingface.co>

.gitattributes ADDED
@@ -0,0 +1,82 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ *.7z filter=lfs diff=lfs merge=lfs -text
2
+ *.arrow filter=lfs diff=lfs merge=lfs -text
3
+ *.bin filter=lfs diff=lfs merge=lfs -text
4
+ *.bz2 filter=lfs diff=lfs merge=lfs -text
5
+ *.ckpt filter=lfs diff=lfs merge=lfs -text
6
+ *.ftz filter=lfs diff=lfs merge=lfs -text
7
+ *.gz filter=lfs diff=lfs merge=lfs -text
8
+ *.h5 filter=lfs diff=lfs merge=lfs -text
9
+ *.joblib filter=lfs diff=lfs merge=lfs -text
10
+ *.lfs.* filter=lfs diff=lfs merge=lfs -text
11
+ *.lz4 filter=lfs diff=lfs merge=lfs -text
12
+ *.mds filter=lfs diff=lfs merge=lfs -text
13
+ *.mlmodel filter=lfs diff=lfs merge=lfs -text
14
+ *.model filter=lfs diff=lfs merge=lfs -text
15
+ *.msgpack filter=lfs diff=lfs merge=lfs -text
16
+ *.npy filter=lfs diff=lfs merge=lfs -text
17
+ *.npz filter=lfs diff=lfs merge=lfs -text
18
+ *.onnx filter=lfs diff=lfs merge=lfs -text
19
+ *.ot filter=lfs diff=lfs merge=lfs -text
20
+ *.parquet filter=lfs diff=lfs merge=lfs -text
21
+ *.pb filter=lfs diff=lfs merge=lfs -text
22
+ *.pickle filter=lfs diff=lfs merge=lfs -text
23
+ *.pkl filter=lfs diff=lfs merge=lfs -text
24
+ *.pt filter=lfs diff=lfs merge=lfs -text
25
+ *.pth filter=lfs diff=lfs merge=lfs -text
26
+ *.rar filter=lfs diff=lfs merge=lfs -text
27
+ *.safetensors filter=lfs diff=lfs merge=lfs -text
28
+ saved_model/**/* filter=lfs diff=lfs merge=lfs -text
29
+ *.tar.* filter=lfs diff=lfs merge=lfs -text
30
+ *.tar filter=lfs diff=lfs merge=lfs -text
31
+ *.tflite filter=lfs diff=lfs merge=lfs -text
32
+ *.tgz filter=lfs diff=lfs merge=lfs -text
33
+ *.wasm filter=lfs diff=lfs merge=lfs -text
34
+ *.xz filter=lfs diff=lfs merge=lfs -text
35
+ *.zip filter=lfs diff=lfs merge=lfs -text
36
+ *.zst filter=lfs diff=lfs merge=lfs -text
37
+ *tfevents* filter=lfs diff=lfs merge=lfs -text
38
+ # Audio files - uncompressed
39
+ *.pcm filter=lfs diff=lfs merge=lfs -text
40
+ *.sam filter=lfs diff=lfs merge=lfs -text
41
+ *.raw filter=lfs diff=lfs merge=lfs -text
42
+ # Audio files - compressed
43
+ *.aac filter=lfs diff=lfs merge=lfs -text
44
+ *.flac filter=lfs diff=lfs merge=lfs -text
45
+ *.mp3 filter=lfs diff=lfs merge=lfs -text
46
+ *.ogg filter=lfs diff=lfs merge=lfs -text
47
+ *.wav filter=lfs diff=lfs merge=lfs -text
48
+ # Image files - uncompressed
49
+ *.bmp filter=lfs diff=lfs merge=lfs -text
50
+ *.gif filter=lfs diff=lfs merge=lfs -text
51
+ *.png filter=lfs diff=lfs merge=lfs -text
52
+ *.tiff filter=lfs diff=lfs merge=lfs -text
53
+ # Image files - compressed
54
+ *.jpg filter=lfs diff=lfs merge=lfs -text
55
+ *.jpeg filter=lfs diff=lfs merge=lfs -text
56
+ *.webp filter=lfs diff=lfs merge=lfs -text
57
+ # Video files - compressed
58
+ *.mp4 filter=lfs diff=lfs merge=lfs -text
59
+ *.webm filter=lfs diff=lfs merge=lfs -text
60
+ cellulose.csv filter=lfs diff=lfs merge=lfs -text
61
+ chi_parameter/Summary_1,4-Dioxane.csv filter=lfs diff=lfs merge=lfs -text
62
+ chi_parameter/Summary_Acetone.csv filter=lfs diff=lfs merge=lfs -text
63
+ chi_parameter/Summary_Acetyl_tributyl_citrate.csv filter=lfs diff=lfs merge=lfs -text
64
+ chi_parameter/Summary_Benzene.csv filter=lfs diff=lfs merge=lfs -text
65
+ chi_parameter/Summary_Chloroform.csv filter=lfs diff=lfs merge=lfs -text
66
+ chi_parameter/Summary_Cyclohexane.csv filter=lfs diff=lfs merge=lfs -text
67
+ chi_parameter/Summary_DEGDB.csv filter=lfs diff=lfs merge=lfs -text
68
+ chi_parameter/Summary_DEHA.csv filter=lfs diff=lfs merge=lfs -text
69
+ chi_parameter/Summary_DEHP.csv filter=lfs diff=lfs merge=lfs -text
70
+ chi_parameter/Summary_Diethyl_ether.csv filter=lfs diff=lfs merge=lfs -text
71
+ chi_parameter/Summary_Dimethylformamide.csv filter=lfs diff=lfs merge=lfs -text
72
+ chi_parameter/Summary_DMSO.csv filter=lfs diff=lfs merge=lfs -text
73
+ chi_parameter/Summary_Ethanol.csv filter=lfs diff=lfs merge=lfs -text
74
+ chi_parameter/Summary_Ethyl_acetate.csv filter=lfs diff=lfs merge=lfs -text
75
+ chi_parameter/Summary_Hexane.csv filter=lfs diff=lfs merge=lfs -text
76
+ chi_parameter/Summary_Methanol.csv filter=lfs diff=lfs merge=lfs -text
77
+ chi_parameter/Summary_Tetrahydrofuran.csv filter=lfs diff=lfs merge=lfs -text
78
+ chi_parameter/Summary_Toluene.csv filter=lfs diff=lfs merge=lfs -text
79
+ chi_parameter/Summary_Water.csv filter=lfs diff=lfs merge=lfs -text
80
+ general_polymers_with_sp_abbe_dynamic-dielectric.csv filter=lfs diff=lfs merge=lfs -text
81
+ PFAS.csv filter=lfs diff=lfs merge=lfs -text
82
+ small_molecules.csv filter=lfs diff=lfs merge=lfs -text
PFAS.csv ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ version https://git-lfs.github.com/spec/v1
2
+ oid sha256:2e80ce549bd6c6e4dfc765d842416278a18422d169859939dd88ec41b61c5529
3
+ size 13714504
README.md ADDED
@@ -0,0 +1,20 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ ## Copyright and licence
2
+ ©Copyright 2025 The RadonPy consortium, all rights reserved.
3
+ Released under thelicense: cc-by-4.0
4
+
5
+
6
+ ## Overview
7
+ PolyOmics is an omics-scale computational database generated through fully automated molecular dynamics simulation pipelines that provide diverse physical properties for over 10<sup>5</sup> polymeric materials.
8
+ The details are in https://arxiv.org/abs/2511.11626
9
+
10
+
11
+ ## Dataset Files
12
+ - **general_polymers_with_sp_abbe_dynamic-dielectric.csv** : Over 40 properties (including abbe number, solubility parameters, and dynamic dielectric properties) for 73,045 general polymers in the isotropic amorphous state.
13
+ - **cellulose.csv** : 50,661 cellulose derivatives.
14
+ - **PFAS.csv** : 3,821 PFASs.
15
+ - **biodegradable_candidate_polyester.csv** : 357 polyesters and 26 polycarbonates that were synthesized for the biodegradability screening (Fransen et al.).
16
+ - **ladder_polymers.csv** : 519 ladder polymers.
17
+ - **corresponding_non_ladder_polymers.csv** : Their corresponding non-ladder polymers.
18
+ - **small_molecules.csv** : 23,361 small molecules.
19
+ - **chi_parameter** : Chi parametes of 93,331 polymers with respect to 15 commonly used organic solvents and 4 plasticizers that are estimated using machine learning models.
20
+
biodegradable_candidate_polyester.csv ADDED
The diff for this file is too large to render. See raw diff
 
cellulose.csv ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ version https://git-lfs.github.com/spec/v1
2
+ oid sha256:840a6f296faac89e0d6d928de2a4bafe840c6bf30648e69f72b960e5173dd356
3
+ size 195460520
chi_parameter/Summary_1,4-Dioxane.csv ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ version https://git-lfs.github.com/spec/v1
2
+ oid sha256:3913c518c54c1215fb3f360592821991475223ac404a93edcb8ea2daed5320b1
3
+ size 14561285
chi_parameter/Summary_Acetone.csv ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ version https://git-lfs.github.com/spec/v1
2
+ oid sha256:812ed367b66390915387cab3c86a976d17f9625666a7d874581525199b7dff91
3
+ size 14546711
chi_parameter/Summary_Acetyl_tributyl_citrate.csv ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ version https://git-lfs.github.com/spec/v1
2
+ oid sha256:560cb4df10bab68c27ef57f55d0ace2ba562351715869614544098c7a3ee1ea1
3
+ size 14570050
chi_parameter/Summary_Benzene.csv ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ version https://git-lfs.github.com/spec/v1
2
+ oid sha256:b827f35d53fcc7f1dd28050541b937d0e5f00c72a5944bc83b6a4fcfb37dd917
3
+ size 14558782
chi_parameter/Summary_Chloroform.csv ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ version https://git-lfs.github.com/spec/v1
2
+ oid sha256:843c67effd95e7ce3eb545325f66cd1bbf0b10214f57da97c5a3f76a35640086
3
+ size 14527057
chi_parameter/Summary_Cyclohexane.csv ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ version https://git-lfs.github.com/spec/v1
2
+ oid sha256:4485e836af0ae6fc72caa942053d23ae16ca62b80591a3297d79291b63c12f40
3
+ size 14564329
chi_parameter/Summary_DEGDB.csv ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ version https://git-lfs.github.com/spec/v1
2
+ oid sha256:f0014c82e11d75de9599d866b89b7fca8c285ae08183f76100beb869f351f701
3
+ size 14534400
chi_parameter/Summary_DEHA.csv ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ version https://git-lfs.github.com/spec/v1
2
+ oid sha256:c7a4c88e7f656c7f25e2ecdbd0703128305fd2414a0f448b60f06069f036713f
3
+ size 14569904
chi_parameter/Summary_DEHP.csv ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ version https://git-lfs.github.com/spec/v1
2
+ oid sha256:ae8be4443fbfa0ee0883cd5ca2d234043fff8709fc005896acd874d847fe7454
3
+ size 14556443
chi_parameter/Summary_DMSO.csv ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ version https://git-lfs.github.com/spec/v1
2
+ oid sha256:7bf0e0aebe4dbbb22b7a60aab36eac2e54df843567188b38441c308aaddf0ce2
3
+ size 14582323
chi_parameter/Summary_Diethyl_ether.csv ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ version https://git-lfs.github.com/spec/v1
2
+ oid sha256:573c444ac456f9d049f4892416908c6dcf6fb3c1fcfc3270c659bce9814dc161
3
+ size 14557115
chi_parameter/Summary_Dimethylformamide.csv ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ version https://git-lfs.github.com/spec/v1
2
+ oid sha256:a3e116674c838a71fcae6747be62366ec20743179b2488b8288266b73cc151ba
3
+ size 14569550
chi_parameter/Summary_Ethanol.csv ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ version https://git-lfs.github.com/spec/v1
2
+ oid sha256:381312b0a880708133a72e07dc28a87dba596aec9bbd23ac96194f19fb5b8124
3
+ size 14578868
chi_parameter/Summary_Ethyl_acetate.csv ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ version https://git-lfs.github.com/spec/v1
2
+ oid sha256:0b9d9d294821a82518bbcbc38ec0d7a29f2eeb1f515f1fb9c0e4bd501c17b342
3
+ size 14553351
chi_parameter/Summary_Hexane.csv ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ version https://git-lfs.github.com/spec/v1
2
+ oid sha256:b152e8bada43c26fce7d08c488eb1d9a8dde544e1b6e826f3059fd4d96e44350
3
+ size 14576149
chi_parameter/Summary_Methanol.csv ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ version https://git-lfs.github.com/spec/v1
2
+ oid sha256:b986e9a76532adb2e754e7dfcc94cafa9008edd680ac8a13f5fdca3df7eee9a0
3
+ size 14539802
chi_parameter/Summary_Tetrahydrofuran.csv ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ version https://git-lfs.github.com/spec/v1
2
+ oid sha256:ac0f2059849b5f004e6ba0f9e4c782efbac835b872c93b876e0bdfc53ccf483f
3
+ size 14569113
chi_parameter/Summary_Toluene.csv ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ version https://git-lfs.github.com/spec/v1
2
+ oid sha256:0924baa1b9b198fdf5f868a8e0841f0eb9b84853263e1857de741a4bdb6f8d2d
3
+ size 14570295
chi_parameter/Summary_Water.csv ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ version https://git-lfs.github.com/spec/v1
2
+ oid sha256:34e91c01dc5b55f5a958c6754162e70d1dfca39a44f019b59e48d0cc722d98fd
3
+ size 14543091
corresponding_non_ladder_polymers.csv ADDED
The diff for this file is too large to render. See raw diff
 
general_polymers_with_sp_abbe_dynamic-dielectric.csv ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ version https://git-lfs.github.com/spec/v1
2
+ oid sha256:e230bd86499559b68b3fd20e7d7fdb538558ccf62463386f981c544953d0c853
3
+ size 190382682
ladder_polymers.csv ADDED
The diff for this file is too large to render. See raw diff
 
small_molecules.csv ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ version https://git-lfs.github.com/spec/v1
2
+ oid sha256:4dc408ff468f9b59b1c59b40efbc8a1750ca0d0c4bcf89ebf8268442553626ac
3
+ size 104746544