[ { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: ATP1B1 MT-ND4 MT-CO2 MT-CO3 RAB3B MT-CO1 ZNF385D TMSB4X SYT1 MT-ND2 SPARCL1 RTN4 MTRNR2L12 SST SEZ6L2 SNAP25 ERBB4 COX7C SERPINI1 RPS28 SLC24A2 BEX1 CKB SLC22A17 KCNC2 GAD1 VAMP2 GAD2 CALM2 MT-ATP6 MAP1B YWHAG ENO2 PRKACB LGALS1 ATP1A3 NARS COX4I1 TAC1 SULT4A1 IDS SNRPN PGRMC1 PTMA TPI1 MT-ND1 STMN2 LUZP2 SLC6A17 TSPAN7 RNF11 APLP2 MT-CYB LANCL1 TUBA1B DYNLL2 PLCB1 FAIM2 MTRNR2L8 CFL1 DNM3 GPX4 VSTM2L PRNP GAPDH RTN1 MDH1 ACTB SLC38A1 HSP90AB1 RPL13A RAB3A NDUFA4 KLC1 GPM6A PEBP1 SLC32A1 MORF4L2 CCK LDHB PRKCE ATP6V1A CCDC85B SYNGR1 NCEH1 STMN1 KCNAB2 TSC22D1 NEGR1 HSP90AA1 PJA2 AP1S1 COX6A1 ZNF536 UBC PNMA2 YWHAB ARHGDIG SPTBN1 ATP5I CALM3 PGAM1 MPPED1 NGFRAP1 CHN1 EDF1 COX8A RP11-20I23.1 RPL21 PFN2 NXPH1 NAP1L5 NDUFB1 MT-ND4L C19ORF70 RAN APP TMOD2 GUCY1B3 TOMM7 DPYSL2 MTATP6P1 GNG3 SEPW1 FUNDC1 MAP7D2 ATP6V0C RPL26 FAM96B SYTL2 COX6B1 NAPB UQCRC1 KCNV1 MORF4L1 ATP5E UBE2QL1 RBX1 SLC6A1 PKM ENO1 PFDN1 GAP43 COX5A PSMA7 RFK DSTN CLU SYNGR3 PAM FAM71E1 MRPS21 LHX6 SYN2 PTPRN2 ECM1 KIF21A SYT11 UQCRH ATP6V1F TSPYL1 SCD5 C14ORF2 INA ATP2B2 WASL CRHBP ATP5G3 NDFIP1 SCN2B TOLLIP ARF3 SLC39A10 TM2D3 PGM2L1 PTPRS PRDX2 DIRAS1 UQCRQ RPL31 C12ORF57 ANXA7 CYCS EPHB6 MAP1LC3B RPL7 ARL4C FGF12 PPP3CB OAZ1 AES SRP9 ZBTB18 ZFAND5 INPP5F UQCR10 NDUFA1 GRIN1 FNDC4 SPCS2 RAB3C MTRNR2L1 RPL13 ATP1A1 ALDOC KIFAP3 NDUFA12 TPD52 ACOT7 PCSK1N BCAS2 MAP2K4 MT-ND3 COX5B SLIT1 OXR1 MYL6 GNAQ FTH1 PIK3R1 ABHD14A OCIAD1 CNTN1 CTNNB1 WBP2 PREPL PPP1CB OLFM1 PPIA NDUFB5 CNRIP1 STXBP1 MZT2B RP11-111M22.2 PPARGC1A PLD3 BEX4 MAGED1 EFR3A SH3GL2 EFHD2 NGRN ALDOA NR1I3 FSTL5 TOMM20 STUB1 CALM1 DNAJB6 UQCRC2 VWA5A YWHAZ EIF4A1P8 MAPK1 EIF1AX ATP6V1E1 RPL18A SMIM3 HCN1 NDUFAB1 TMA7 NAP1L3 CRTAC1 C8ORF4 IDI1 LAMTOR2 CNP MAP1LC3A AK5 RPL38 TMEM130 MAF TENM3 TUBB2B COX7B USMG5 TCEAL2 CLIP3 NDUFB3 NHP2L1 DNAJB9 CHL1 SYNPO LINC00116 ARL8B TOMM22 CAMK2G MRPL15 NUDT4 ATP5G1 NMNAT2 MFN2 CHMP4B COL24A1 HRH3 MAGED2 FAM198B ATP6AP2 BNIP3 SLC9A6 PET100 MAPK8IP2 ARHGAP35 HEY1 EID1 PSMB7 VDAC1 LMBR1 CCDC25 ARPC4 YAE1D1 C10ORF10 NDRG3 NDUFA2 RNF212 HSPA8 RAB2A HCN2 NCDN NDFIP2 OPCML CNTNAP3 NDUFB8 HINT1 ARF1 DKK3 EIF1 LIMK1 VSNL1 GABARAPL2 RPL11 AKR1C2 HMGCS1 MPC2 SCAMP5 FIBP ITM2C TMEM141 TMEM230 SLC7A1 FKBP8 ARHGDIA NEFL LYNX1 CLMN SH3BGRL2 PAFAH1B2 ATP6V1G1 ASPDH RANBP1 CDK5R1 SH3BGRL3 MTND1P23 PEX5L RAB5C CERS6 UBE2N IFI6 GUK1 ISCA1 SSTR2 ACTG1 ELOVL7 AURKAIP1 KIF1A CX3CL1 SPOCK3 RAB27B MARCKS CPLX2 CADM2 NRIP3 CDK14 ATP2A2 SERINC3 MRAS RAB7A MLLT11 GHITM PRKAR1A NDUFA11 NNAT NECAB1 RSL24D1 MLF2 SLC25A4 BEX2 PITHD1 ANK1 STX1B RPL37A PIN1 YJEFN3 GMFB NDUFB10 NCALD PPDPF RAB6B JAKMIP1 CACNG3 RPL32 GABRA1 NFE2L1 ARX CDS1 RPL41 MED10 BCAT1 CDH13 KIF3C ATP6AP1 DNAJC6 ATPAF1 CBX6 RPS26 RASL11B CEND1 PI4KA NDUFB7 QDPR TRAPPC1 NAP1L2 PNKD LDOC1 NEFH ATP5O ELAVL2 MRFAP1 HMP19 PPA1 MPP1 MTND2P28 VDAC2 SAP18 NRCAM THOC7 PLCH1 SOD1 NUAK1 NPAS3 PRKAR1B SKP1 CLSTN1 KIF5A DNER QKI CAB39 ATP5C1 C7ORF50 DPP6 ATP6V1C1 RPL35 C6ORF1 HIGD1A NIPA1 STMN3 PPP1R9B ATP6V0E2 FTL KLHL5 PNOC D4S234E NOP10 WSB2 MDH2 PNMA1 C9ORF16 CHCHD2 BANF1 SPOCK1 PLCXD3 TMEM258 BTBD11 BSG FAM127A RHEB RRS1 STXBP6 RTN3 C1ORF233 TAGLN3 TMEM59L B3GNT1 SLC1A2 SCN1A HNRNPH2 HN1 SNX3 BLOC1S1 DCLK1 NEFM MAPRE3 HS6ST3 APEH GOT2 LINC00087 TCEAL3 UBE2M UBE2E3 HSPA4 PPP3CA SLC25A5 TMEM117 SMIM13 TBCB SARAF POLR2L COX6C CISD1 OLFM2 TBC1D7 CYP4F11 EPB41L3 VPS35 SNCG ATP5B YWHAQ MYBL1 SRP14 PTPRM PRDX1 NDN CCDC124 PSD3 GSTO1 FBXO2 ADD2 TMEM35 SNX10 CDC42SE2 NDUFB11 ANKRD18A AC011043.1 REEP5 ATP6V0B SCAND1 CALN1 KCNAB1 ARF5 MANBAL VWC2L PSMC3 SYT17 ATP6V0D1 B3GALT2 IGF1 HOMER1 UBE2V2 MTRNR2L6 RAB3IP NAA38 SULF2 NDUFB2 TCEAL7 ACTR1A MAP4 MAP7D1 MGST3 UQCR11 CPLX1 RCAN2 NDUFC2 HK1 PNMAL1 ARHGAP6 TMEM147 CLTB ATP6V1G2 CFH BIRC5 SERF2 GABARAP MIF RNASEK-C17ORF49 TUBB TUBB3 NDUFA13 APOLD1 PCDHAC1 AC244489.1 PCDHA4 PCDHA9 PCDHA10 GTF2H2C_2 TBC1D15\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "PVALB-expressing interneuron" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MTRNR2L1 ATP1B1 SNAP25 SCN1A SYT1 ZBTB20 PTCHD4 REEP5 PREPL ELAVL2 MTRNR2L12 VDAC3 NFIA PSMD12 ZNF385D FGF12 COX7A1 APP PTPRT BCL11B MAF PRKACB GLIPR1 SLC7A8 MTCH1 CLU BIRC5 YWHAG RAB2A PCDH19 RTN1 MT-CO1 CAPZA2 TSPYL1 ECM1 FTH1 PCDHGA5 RAP2A ARF3 ARFGAP2 HOMER1 NDFIP1 TMEM59L SYNPR TMLHE ATP1B2 FABP3 CDH7 GABARAPL1 RAB3B EFHD2 TENM3 IQSEC1 HPRT1 COX7B RAP1GDS1 RPH3A AK5 MSMO1 WIF1 ASNA1 BNIP3 SUMO2 RGS4 KIF5A MAPK1 DKK3 SYN1 PHYHIPL RPL32 RPS26 ATP6V1A ARL6IP5 PPP2CB HSPA8 ENO2 PI4KA CDK17 MTRNR2L6 COX6C CTNNA2 RPL37A RPS4X KLF2 AP1S1 ARHGAP29 NAPB UBC GABRA1 NRCAM APLP2 SMIM13 RTN3 GDI1 CBLN4 ATP5A1 NCEH1 CLTC MAP2K4 ARHGDIG SLC35B1 VSTM2A RBX1 BTBD1 CA11 QKI ERBB4 ACTR6 PAM ABHD14A RP11-342F21.1 SERF2 OLA1 ACTB ATP5B ARL6IP1 NPTN PPM1A DYNLL2 GLIS3 IGF1 SCN1B TSC22D1 RPL21 FTL ARHGAP35 RAB3IP ZNF319 RGS5 SYTL2 UQCRC1 SLC25A5 PTPRM SPOCK1 LGI3 MMP24-AS1 ATP5E ZFAND4 CTNNB1 POLR2M PIEZO2 RPL31 ATP1A3 ATP6V0E2 ZFAND5 DCLK1 MT-CO3 NDUFB10 CHN1 BRK1 USMG5 KAL1 PCDHA10 ATP2A2 MAGED1 CNTN1 GRIN2A CAB39 TIMP2 ROBO2 RAPGEF5 STMND1 PRNP NGFRAP1 RP11-111M22.2 CNTNAP3 PTPRN2 STX1A GTF3A PNMAL1 FAM3C YWHAB EPHB6 IDS BSCL2 ALDOA AC244489.1\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "PVALB-expressing interneuron" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: SPARCL1 ATP1B1 MT-CO2 MT-CO1 MT-ND4 SNAP25 MT-CO3 SYT1 MT-ND2 HSP90AA1 CKB ZNF385D MT-CYB CALM2 NDRG4 VAMP2 GAD1 SLC6A1 CALM1 MAP1B RTN3 RAB3B VSNL1 TMSB4X ATP5A1 ERBB4 GAPDH RTN4 ACTB INPP5F HSP90AB1 SNCG MTRNR2L1 APP SCN1A RPS28 MT-ATP6 GPX4 SELM SNRPN MDH1 TENM3 ISCU PRNP CLSTN1 CLU RTN1 PGAM1 THY1 CEND1 GDI1 YWHAG PREPL SLC24A2 FTL ARL6IP1 SERPINI1 COX4I1 RPS15 REEP5 EIF4A2 STMN2 TAC1 STMN3 GABRA1 PNMA2 TSPAN7 MT-ND3 RGS4 FAM3C ACTG1 TCEAL2 LANCL1 ATP1A3 NDFIP1 RPL15 RPL38 PKM COX7C OAZ1 TUBA1B TIMP2 NGFRAP1 ATP6V1B2 SPOCK3 PRKACB C14ORF2 ARL6IP5 RAB3C COX6A1 RAB3A UCHL1 RPL13A BEX1 GAD2 GOT1 SERINC1 VDAC1 UQCRB ENO2 SEZ6L2 PSMA7 NDUFA13 PEBP1 OXR1 TSC22D1 MT-ND5 STMN1 DPYSL2 VAMP1 RPL32 RP11-20I23.1 ITM2B SNX10 NAPB ZNF804A UQCRQ RPL17-C18ORF32 NAT8L CPLX1 SLC32A1 RPL37A UQCR10 UQCR11 NDUFB4 ATP2A2 NACC2 ELAVL2 SLC38A1 GPM6A HMGCS1 VDAC3 RPL6 DKK3 NAP1L2 KCNAB1 ATP6V0C APLP1 UBC FAIM2 RPL13 RPL35 ATP1A1 TSPYL1 UQCRH ACOT7 CTNND2 MGST3 NDUFB2 EIF1AX ARF5 NCDN USMG5 DNM3 SNCB PPIA NDUFA4 ALDOA KCNC2 RPL7 MIF COX7A2 STMN4 CALM3 RPL36A SYN2 EIF1 SNX3 CNTN1 KLC1 AP2M1 POLR2I COX5A CTSD MRAS SOD1 NDUFB3 SUCLA2 NAP1L3 NDUFA11 PHYHIPL PJA2 MAGED1 NCEH1 NDUFS5 NDUFB11 PACSIN1 NDUFV1 SEPT4 STUB1 RAN RPL39 C6ORF1 OCIAD1 EXTL2 UQCRC2 TMEM59L SCOC PPA1 TCEAL7 ATP5G3 ATP6AP2 MTRNR2L6 BNIP3 GABARAPL1 TAGLN3 PTCHD4 TPI1 CHGB ATP5E CCDC85B CYCS NDUFB8 MORF4L1 POMP NDUFA5 SPTBN1 C1QBP VSTM2A MT-ND4L ATP5C1 NDUFC2 ALDOC COPE CALN1 NEFL EFR3A MAPK1 SLC39A10 MTUS1 LGI3 CLTC ATP6V1F RAPGEF5 RPL12 MAP1A RPS3A RPL8 EDF1 MYEOV2 RCAN2 TRIM37 MORF4L2 AES NRCAM CDKN2AIPNL NDUFB10 ATP5J CHN1 REPS2 ATP6V1G1 TM2D3 TMSB10 YJEFN3 TMEM258 SPCS2 SYNGR1 GPX1 CFL1 MTATP6P1 RPL41 RP11-111M22.2 SKP1 PPP1CB NAP1L5 AP2S1 GNB1 SMIM13 DLD ETS1 CAP2 NDUFA12 CDS1 HSPA8 SLC25A11 C12ORF57 PCDH17 TM6SF1 NDUFB7 MTX3 SPOCK2 KCNAB2 RAB6A CDH13 NIPA1 GSTP1 SMAP2 ADAM23 SLIT1 DIRAS1 ARL8B BSG CDC42SE2 EDIL3 NREP GNG3 MT-ND1 B2M TMX4 SNAP91 COX8A SLC12A5 OLFM1 AURKAIP1 APLP2 FTH1 SYN1 AK5 CLEC2L KIF21A TMEM230 MYL12B PSMB5 LMO3 KIF1A PRDX2 WBP2 TPGS2 WSB2 HMP19 DNAJC6 EIF4G2 PHB TMA7 MAGED2 CAMKK2 ATP5J2 MRPS21 ELMO1 CADM2 PRDX1 ARL1 TMEM35 CISD1 HRH3 QDPR SLC25A6 PEA15 C1D DYNLL2 CLTA MLF2 CNTNAP3 OST4 ATP5I NMNAT2 PNKD ATP6V1E1 CAPZA2 SOX6 RPH3A AZIN1 RPL18A RAB6B CLSTN2 FLT3 CSDE1 TUBA1A PRKAR1B ARPP19 MAP1LC3A SCN2B LGI2 POLR2K PPP2R1A SH3BGRL3 PTPRN2 CPE FAM96B KLHDC3 GABARAPL2 MTRNR2L8 COX6C PFDN1 TBCB ATXN10 RAB2A PIN1 HSPA4 SLC6A17 TMEM130 TSPYL4 CHCHD2 NPPC THOC7 NXPH1 PRKCE OPA1 SERP2 RPS2 PTPRM ATP5O MT1X CDKN2D GHITM RSL24D1 SERINC3 C19ORF43 CADM3 COQ10B RNASEK-C17ORF49 FKBP4 HPRT1 CYFIP2 PPP2R4 CLPTM1 ATP6V0E2 COX6B1 VSTM2L FAM19A4 CDK5R2 PNMAL1 ATP9A SNRNP25 DSTN SLC25A5 ACTR10 PTMA SRP14 FGF12 RPS26 GTF3A PPM1A CD99L2 MLLT11 H2AFZ RGS5 RPL31 COA3 TMEM14A UBE2N RPL10A ALDH5A1 KLHL5 DYNLL1 CFL2 SLC25A4 STX1B MTRNR2L12 SCAMP5 ROBO2 ENO1 GLRA2 FKBP8 SYTL2 NSF IDS NR1I3 TUBB2A PAFAH1B2 GLIPR1L1 CD63 EPB41L3 MYO5B TOLLIP RASSF8 BTBD10 FBXL21 SQLE GPNMB ADSS HTR2A SNX22 IQSEC1 COX5B PTPRN CKLF CRKL MRPL15 POLR2M HDDC2 RFK UBB SCN1B TMEM11 TRMT112 SHARPIN DRAP1 PGD ATP5B PPARGC1A SERTM1 REEP2 WBSCR17 TKT MAP2K1 SUB1 KIF5A CAMK2G RAP2A SAP18 PPP2R2C NDFIP2 LHX6 DPY30 MAGEH1 MZT1 ARF1 DMTN OXCT1 BAALC PCDHB4 FAM174A PPP3CB TLN2 GMFB PLEKHG3 BEX4 HOPX PLSCR1 WASL SPRN SH3RF1 TOMM20 PCDH19 RAB4A OPN3 LAMTOR2 NDUFB5 TMEM160 MTFP1 SH3GL2 RAB11FIP5 RAB5C FASN YIPF3 PSMC5 CAPNS1 PEF1 PITPNA BCL2L10 PCMT1 DCLK1 HINT1 PLCB1 LDHB NPTN HOMER1 MAP7D2 ATRN PTPRH ATP5H CBX6 CAPZB WDR47 NHP2 ATP6V0D1 SEZ6L CHL1 TGOLN2 SDCBP PLCXD3 IGFBP6 TUSC2 CTBP1 TOPORS-AS1 RAP1GDS1 CNTN6 RPL21 JUNB UBE2D2 NRIP3 KCNK1 GPR98 SLC9A6 ADAMTS17 PPP1R7 ISCA1 COX7B CDK5 CDH7 NKIRAS1 ATP6V1A GUCY1A3 DNAJA1 CDK14 DYNC1I1 DEXI RP11-632C17__A.1 POLR2L RPL26 PRDX5 PROX1 GDE1 ETV1 CHMP4B HAPLN1 HK1 NDUFS6 STXBP1 UBA52 C11ORF31 HSPE1 TMOD2 C9ORF24 PGK1 LMBRD2 ARL4C BAD SLC1A2 PHLDB2 RABAC1 SMS ARL8A SLC9A1 ST20 NGRN HSPBP1 TPPP UROS PCBP1 LRRC59 APLN OLA1 GMPR TCEB2 MRPL47 PEPD ETS2 YAE1D1 MANBAL PELI3 ATP2B2 TENM1 UQCRC1 UTRN EPHB6 MYO16 HMGCR UQCRFS1 PPP2CA ARHGAP35 CCK ATP5G2 RELN VPS35 MTCH1 MTPN TUBA4A PPP1R9B RHEB SPRYD3 NCAM2 SEPW1 SYTL5 AGT SCD5 SSTR2 UBE2E3 GADD45GIP1 CABP1 TRAPPC1 CRHBP ADD2 CCDC184 PFDN4 GRIN2A ZNF536 PNMAL2 OSTN GUK1 COX7A1 FAM149B1 SLC22A17 RGS12 MTND2P28 ARL2BP NME1 DDAH1 FRMD4B ANKRD2 AP2B1 RP11-345J4.4 CRYM CHI3L1 DYNLT3 ENC1 ZBTB20 USP5 LDOC1L FAM134A DNER DNAJB6 MPPED1 HS6ST3 ZBTB18 PRKAR1A TOMM22 OPCML CLIP3 IGF1 RPS19BP1 ANAPC13 RASGRF1 TOX3 ZNF365 OSGEPL1 NDUFA1 CREG2 ITM2C UBL5 UBE2V2 CDK5R1 SPHKAP ARF3 MRPL12 D4S234E CAMK2D SYT11 ZFAND5 CX3CL1 CACNG3 PSMC3 CYC1 YWHAB PLD3 CITED2 KLC2 TPT1 HRC PFN1 CCT5 PNOC KCNS3 TMEM141 SYT4 ARX PGM2L1 ATOX1 MFSD6 TCEAL3 CCDC74A RP11-656G20.1 ZNF385A RNF181 AP3S1 TRPT1 SEC61G BTBD11 RAB3IP PAM APBB1 RNF144B MAP4 CNTNAP5 SUMO1 TCEAL5 CDC37 NDRG3 PRIM1 KCNK2 COL6A1 LRP1B ATP1A2 RASGRF2 APEH ETFB YWHAZ CHP1 FBXO2 NRSN2 DCC KCNA1 CACNA2D2 LBH FIBP MAF DCTN3 C4ORF3 SULF2 B3GNT1 RP11-195F19.5 TUBB POLR2J RNF11 CTNNB1 CAB39 RHOA WBP11 SUMO2 KCNMB4 WLS PSMD2 C1ORF115 ACP1 HIGD1A TCEB1 NDUFAB1 FKBP7 FARSA MYL6 GRINA SELT CDCA3 CCDC115 FXYD6 GRPEL1 DNAJC5 BTBD1 PCDHB11 MZT2B PRDX3 RPS5 ELAVL4 MT1M SARAF BRK1 RAB11A MIR6723 BAG4 PIP5K1B ZCCHC17 NDUFA2 MRPL33 FAM127A NPTXR FAM159B NHP2L1 LAMTOR1 EPS15 PHYHIP ATP5F1 QKI UBE2M MAP1LC3B TMTC4 FABP3 ATP6V1G2 RPL3 APOLD1 PSMB3 RPS10 IFITM1 CORT GTF2H2C_2 PCDHA9 PCDHA10 PCDHAC1 PCDHA4 AC244489.1 TBC1D15 TUBB3 CFH BSCL2\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "PVALB-expressing interneuron" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MTRNR2L1 SYT1 MT-CO3 MT-CO2 MT-ND4 ATP1B1 GPM6A VAMP2 MT-CO1 MTRNR2L12 SLC12A5 MT-ND3 DNAJC21 MT-CYB ATP1A3 SLC6A1 THSD7A MT-ATP6 MTRNR2L6 PRNP AK5 SCG2 MT-ND2 NEGR1 SRP14 GABRA1 GAD1 GAP43 NAPB DNAJB9 MT-ND1 FAM84A CCDC85B AES BCL11B SYNJ1 DYNLRB1 CAMK4 ATP1A1 QKI HEY1 SYT11 KCNAB3 CNTN1 RTN1 MAP1B SCN3B PFDN4 RABAC1 RND3 NECAB1 PREPL GLRA2 INPP5F PJA2 HSP90AB1 NDRG4 PSAP PET100 CHN1 TAC1 STX1A MAFB PRKAR1B CLSTN1 VSTM2A MAF MBP RAB6B OPA1 TMEM150C PLCXD2 MAPK8IP2 TUBA1A PNMA2 COPE CALM2 NARS VEGFA YAF2 FGF12 NIPA1 STMN4 HMP19 KCNK1 CTSD PCDH19 PVRL1 REEP5 PLCXD3 PEBP1 SARAF NDUFB4 CA8 DNER MTRNR2L8 RPL41 PCDHA4 PTMA TSC22D1 TPRG1L OAZ1 ACAT2 SNCG B2M PPP1CB PRKAR1A SPARCL1 CDK5R1 GPR98 PEA15 PTGES3 ALCAM CTBP1 RPL23A ATP5F1 GMFB ATP6V0E2 RAB3C BTBD11 JUN CEND1 RPL3 CALM1 MTUS1 TOLLIP PPP2R2C CKB CACNG3 ERBB4 ZNF385D SYTL2 RAB3B RP11-111M22.2 IDS RP11-20I23.1 BIRC5 C18ORF32 RPL17-C18ORF32 ATP6V0C NSF\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "PVALB-expressing interneuron" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MT-CO1 MT-ND2 MT-CO3 NR1I3 MT-CO2 ATP1B1 RAB3B MT-ND3 NDRG4 SNAP25 ESCO2 RPS27A TSC22D1 NREP VDAC3 KLHL5 GOT1 UQCRH MT-ND5 CISD1 PRKACB DNER MT-ND1 EIF5A2 FAM150B CDH8 ATP2B2 PCDHA4 TBC1D15 DNAJC21 HHATL FAIM2 NDUFA5 ITM2B LGI3 LMBR1 UQCR11 MRPS7 PARM1 GSTT1 TPT1 SCN1A SOX2 MT-ND4 GHITM NDFIP1 MAP1B OCIAD1 SPCS2 STK32B SNAP91 TSPYL1 GLIS3 ATP6V0C SKP1 SMIM13 MTX3 CALM1 RPL15 NDUFB3 OXR1 ELAVL4 RPS4X ATP6V1C1 SYNJ1 PITPNA NPTXR SLC17A8 MLLT11 OPA1 RTN3 PPARGC1A GABRG1 ADAMTS17 HMP19 TPGS2 OAZ1 SPOCK3 POMP CAPZA2 SLC25A11 MT3 ARL8A EPS15 HCN2 GAD2 BSN GABRA1 CTD-2179L22.1 SERPINE2 ARL6IP1 DGKG GDI1 SNCB MT-ND4L GLIPR1 SERINC3 OST4 ADD2 MTRNR2L6 PLCXD3 PAM GNB1 SYT1 PSMB7 BTBD10 GAD1 SYNGR1 ATP5C1 PRNP PPP2R1A C1QBP NAP1L5 ZBTB18 VEGFA BTBD11 EIF1AX ATP6AP2 UBE2V2 ZBTB20 MT-CYB UROD CPLX2 PLD3 KCNC2 CHL1 ATP5J TOMM70A COX4I1 HNRNPH2 MTRNR2L12 MT-ATP6 CLSTN1 RGS4 JUND WDR47 RTN4 CXXC4 RP11-111M22.2 PPP2CB CDC37 RP11-20I23.1 RTN1 ARL6IP5 FAM198B INPP5F CEND1 LPAR6 NSF IDS RPS28\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "PVALB-expressing interneuron" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MT-CO1 MT-CO3 MT-CO2 MT-CYB MT-ND4 MT-ATP6 MTRNR2L12 MTRNR2L1 MT-ND2 MT-ND1 SYTL2 ZNF385D MT-ND3 KLC1 MTATP6P1 MTRNR2L8 TBC1D15 ERBB4 RP11-111M22.2 PEBP1 RPL37A HSP90AA1 SOX6 TF MTRNR2L6 MEPE SNAP25 GAD1 PRDX3 SPARCL1 ENO2 RPL32 EIF1B MT-ND5 TUSC2 SIRPA ATP1B1 GOT1 DYNC1I1 TCEB2 RPL39 INA SERINC1 PACSIN1 CALM3 CAPZB CNTNAP3 TMEM130 COX4I1 ATP6V0E2 NEGR1 KCNAB1 GPRC5B ACTB CDK5R1 PTPRS IDS PTCHD4 CALM1 ARL1 C10ORF10 SLC22A17 EIF4A2 NCEH1 SNCB AP2S1 EPDR1 ITFG1 BIRC5 YWHAH RPL13A GRIK3 HAPLN1 FILIP1 YWHAG FBXL16 LMO4 NCDN PFKP MAP1B SEPW1 SOX11 NPTN SYT1 RAB3IP KITLG TLL1 KIF21A TMSB4X RTN3 ALDH5A1 SSTR2 TCEAL3 GNB1 COX6B1 SYNGR3 AZIN1 AURKAIP1 KIFAP3 SLC17A7 TUBA4A LANCL1 ATP5E DNAJB6 CEND1 TOMM7 RPL17 MRPL15 HPRT1 DCLK1 RPL38 EDIL3 FAM131C MRPS36P4 SH3GL2 MAP2K1 RPL13 PHYHIP UQCRC2 MED31 CERS6 KCNC2 GAPDH ATP6V1G1 PLCH1 IDH3A MDH2 PKM CTNNB1 ATP6V1A SLC24A2 PPP2R1A RPS27A CHCHD2 PCDHA9 ZFAND4 GDI1 C11ORF31 KIF5A MAP1A INPP5F HDAC1 USP5 B3GALT2 FGF12 MRPL55 MBP CHRM2 SLC12A5 CTSD COX8A EID1 NGFRAP1 KLHL13 C7ORF50 SERF2 MYO1B SNRPE RTN1 KIF1A DMTN ATP9A CPLX1 CDC37 B3GNT1 TPI1 NDN SUMO2 TIMP2 ATP6AP2 HSP90AB1 RPL35 TKT HMP19 COX7C SCN3B SYT11 MT-ND4L UCHL1 COX6C PLEKHG1 CLU KLHL5 TCEAL2 TMEM35 LHX6 MAPK8IP2 ARPP19 PPP2R2C NKIRAS1 COX5B ARF1 MAP4 SLC7A8 RGS5 REPS2 DNAJA1 CPE C18ORF32 RPS15 RPL17-C18ORF32 NSF RAB3B\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "PVALB-expressing interneuron" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MT-CO2 ATP1B1 MT-CO3 MT-CO1 YWHAG RAB3B GAD1 MAP1B PSAP GAD2 RTN3 MT-ND4 SARAF HSP90AB1 NGFRAP1 SPARCL1 SYT1 CALM3 GDI1 ELAVL2 NDFIP1 SNAP25 GAPDH NDRG4 ERBB4 SKP1 UQCRH ACTG1 ARL6IP1 TSPYL1 ATP1A3 ATP6V1A KCNC2 ACTB ITM2B FAIM2 MTRNR2L1 PGK1 TAC1 MTRNR2L12 KLC1 APP PGAM1 DNER PNMA2 OXR1 ATP2A2 RAB3A UCHL1 PREPL PRKACB PRNP CLU RTN1 CPLX1 ZFAND5 TIMP2 RAB3C MT-CYB GOT1 CRHBP SLC22A17 HSP90AA1 THY1 VAMP2 MT-ATP6 SLC24A2 SCD5 ATP5B MORF4L2 PKM EIF4A2 STXBP1 PEBP1 ARF5 GPM6A IDS ZNF385D MT-ND1 PPP2CB CALM1 RTN4 SPOCK1 ATP6V0E2 RNF144B TERF2IP STMN3 RPL13 GABRA1 MT-ND3 ARL6IP5 MT-ND2 SYN2 FGF12 STMN2 DNM3 EFR3A NAP1L3 SLC6A1 SEPW1 MTCH1 PCDH17 BEX4 C14ORF2 RGS4 PPP2CA PTMA CKB WBP2 FXYD6 RCAN2 ATP6V0C RP11-20I23.1 ALDOA HPRT1 RPL41 SNCB PHYHIPL PRKAR1A ALDOC RPS2 TUBA1B ATP9A PPP2R1A SCAMP5 NCEH1 SLIT1 CALM2 GUCY1B3 GABRG1 ARL8B PJA2 DCTN1 DNAJC6 PDCD5 GLRA2 YWHAB DPP6 MAP4 CTSD WSB2 LANCL1 INPP5F PGM2L1 GPX4 MARCKS MAPK1 SOD1 TAGLN3 SPOCK2 UBE2N ATP6V1B2 SIRPA SNRPN TMX4 APLP2 SLC6A17 TMSB4X ATP6AP2 SEZ6L2 CEND1 NSF TSC22D1 DPYSL2 NDUFA13 KIF1A FTH1 ISCU SULT4A1 RPL21 MTRNR2L6 SPOCK3 OLFM1 NDUFS5 SLC25A5 FAM134A TRIM37 RPS28 RPL3 BEX2 TENM1 PPIA UQCRC1 NGRN TOMM20 KCNAB1 GPX1 ACTR10 EPS15 PLD3 PPP3CB KCNAB2 YWHAH VSNL1 CHMP5 PLCXD3 COX8A SCN2B CLTB SYT17 TUBB4A CNTN1 COX4I1 DMTN OLA1 SERF2 AP2M1 STRAP DNAJB6 SERINC3 PRKAR1B NAA38 COX7A2L IGSF21 CLSTN1 NMNAT2 SERINC1 CLIP3 PRDX2 SCN1A SLC38A1 CSDE1 RHEB VDAC3 WASF1 STMN1 KIF21A TMA7 SYNGR1 PINK1 FAM3C KIAA1024 PRKCE ITFG1 PLCB1 RHBDD2 OAZ1 UBL5 ELAVL4 EDF1 UQCRB SELT MAGEL2 RNF11 ANXA7 NCALD NDN ERH RND3 TOMM7 PTPRM SLC12A5 UBQLN2 ATP6AP1 ATP5J2 RAB6B LHX6 TUBB2A H2AFZ SLC25A4 CHL1 SYN1 TPI1 COX5B CDH13 WNT16 YWHAZ PARM1 GLRA3 PCDH19 PTGES3 ISCA1 PPP3CA RPL15 HCN1 GRIP2 TPT1 PITHD1 PNMAL1 NPTN REPS2 KRAS ARF3 PAM TCEB2 SNCA CMPK1 TENM3 TUSC2 LDHB PIN1 RAB11A SCOC UBE2M TPPP EIF4G2 CHMP4B SMIM13 FAM127A PNMAL2 TMEM59L C1ORF233 RPS12 TCEAL3 RPS27A KCNF1 NRIP3 NDUFA11 BAALC ARX USMG5 SULF2 TLN2 ANK1 SRP14 COX7C HNRNPH2 TSPYL4 MAP1A DNAJA1 SH3GL2 SLC7A5 TUBA1A MT-ND4L CNR1 CAMK4 ENO2 DKK3 MDH1 OCIAD1 VPS35 MAP2K1 CDK5R2 CERS6 GABARAPL1 EPHB6 AES STXBP6 CORO2B CYFIP2 MLLT11 RELN SYNGR3 CFL1 BSG LUZP2 NDUFB1 FTL CORT MFN2 FAM19A2 OAT HMP19 NAP1L2 PEG10 APLP1 HDLBP CDK5R1 NDUFA5 HAPLN4 TSPAN7 COPS8 ALDH5A1 KLHL12 CDK14 HRASLS5 SCN3B BTBD11 NXPH1 HINT1 BSCL2 CD24 SLC9A1 MAGED1 BASP1 TOLLIP UBC ENSA SNAP91 NDRG3 NDUFA1 ATPAF1 MT3 NREP CHGB PPP2R2B UBE2V2 ARF1 ARL4C PTPRN2 RAB2A PPP2R4 PGRMC1 RANBP1 CNRIP1 SERPINI1 TMEM70 TPRG1L CITED2 CCDC25 PIK3R1 ARPP19 GNAQ CADM2 SELM SRP9 REEP5 BEX1 SAP18 DYNLL2 TRHDE TCEA2 CHCHD2 MRFAP1 MGST3 ADSS UQCR11 CTNND2 PCMT1 NEGR1 SLC32A1 NAPB BAG4 CTBP1 ZNF536 NDFIP2 ATP6V1G1 FBXO2 ARFGAP2 TF ESCO2 MTRNR2L8 BIRC5 AP2B1 ANXA4 NDUFB8 COX7A2 CRTAC1 C1QA NHP2 CAMK2G CRKL MPC2 UQCRQ TPD52 ANXA6 MTG1 VSTM2A VDAC1 CDC42SE2 ATP5J TRPT1 UBE2E3 HSPA8 LMO4 C19ORF70 THOC7 TESPA1 COX6B1 DGUOK RAB3IP NPAS3 MB21D2 PPP1R7 TM6SF1 SH3RF1 TUBB2B B3GNT1 OXCT1 QKI PPARGC1A PACSIN1 DRAP1 PCGF1 SNRNP25 ATXN10 UBA1 MAGED2 GUCY1A3 MAP7D1 PFKP SOX11 RAN ISG15 CD63 SKAP2 SNX3 GNG3 FUNDC1 BCAT1 C16ORF13 DYNLL1 EIF1 PDP1 GNB1 SLC35B1 RAMP1 NRSN2 LDOC1 D4S234E CLTC PFN2 MAPKAPK2 GOLIM4 STX1B CRYAB MAP7D2 RBX1 SEMA5A PRTG MRPS21 ARHGAP24 HMGCS1 CBX6 TCEAL5 SCN1B UHMK1 ZNF804A FAM174A SSBP3 ETV5 MMP24-AS1 C19ORF43 HN1 WBP11 POMP TMTC1 TRMT112 RPS26 MZT2B UBE2D2 CHRM2 WBSCR17 SALL2 CPNE8 NECAB1 NDUFB5 ZNF385A HSPB3 GSTT1 NTN4 GRINA KCNK2 PELI3 SLC39A3 KIF3C EDIL3 COMMD6 NDUFAB1 HDDC2 POLR2M GMFB DNAJB9 MYL12B RPL8 ABRACL BCAS2 SPP1 STK39 GFRA1 SULF1 STUB1 KLHL5 GRIK1 PTPRZ1 INSIG1 EID1 MAP2K2 INA CACNA2D2 CAPNS1 GOT2 RABAC1 AZIN1 VAPB DYNLT3 ARL2BP MMD CCT5 JUND CFL2 DIRAS1 RAB1A C11ORF31 FAM219A ARHGAP6 SPTBN1 UQCRC2 CDHR1 CYCS MTPN RPL12 MAP1LC3A OPA1 PCDH15 GDE1 LMBRD2 NRCAM SMAP2 RRAGA YIPF3 HMGCR CLTA SLC9A6 RPL31 HSPA4 BOC HHATL HRH3 PCSK1N CAMK2D MFSD6 ATP1A1 PAK1 CAMK2N2 FILIP1 RPL6 COX6C PLS3 PPP2R2C VGF RPL38 GRIK3 PAFAH1B2 SNCG ZBTB18 SPRYD3 RAPGEF5 COX7A1 MAPK8IP2 EPB41L3 IQSEC1 VSTM2L RP11-111M22.2 SUMO1 PRDX1 C11ORF96 ATP5E DPY30 VWA5A LCNL1 EGFL7 TMEM35 FABP5 GPR149 CAP2 LL0XNC01-16G2.1 CNP SEMA3C RNF208 PRKCB CREG2 RPL32 GPRC5B TMEM14A NDUFC1 PSMC5 PPAP2B PCP4L1 GABARAPL2 SUMO2 RP11-357G3.2 NDUFV1 DSTN EIF1B PTCHD4 FAM96B SUMO3 ATP2B2 GORASP2 PRUNE2 COPG1 C8ORF4 BAI2 PPM1A SYT4 EIF1AX ALKBH7 PRPH2 SOX6 ELMO1 VAMP1 TBCA C6ORF1 ZBBX TMEM151A SYT3 DNAJC5 PNKD CTNNB1 GHITM RP11-133L19.3 ENO1 ACSS1 TANC1 SEC61G ACLY RPL26 UQCRFS1 ARHGAP35 SNX17 RAP2A KIFAP3 NFE2L1 LPPR4 LMBR1 CHP1 PET100 SERP2 NDRG2 DCTPP1 OSTN AKR1C2 UBA52 WDR47 ARL4D BCAP31 LAGE3 RLIM RASL11B PRELID1 NRGN TMEM65 SNX10 MYEOV2 TMEM130 TCEAL7 TGOLN2 TM2D3 UQCR10 AP3S1 GNG2 CADM3 ALCAM RASSF3 MPPED1 FKBP8 TUBD1 CAPZB NUDT21 GAP43 SLITRK1 ATP5F1 TRPV2 KIAA1211 NXPH2 KIF5A LZTS1 TMEM160 SCG2 MAP2K4 GTF2B HIGD1A OPCML PSMA7 TMEM147 DEXI LIMK1 TSPAN4 KCNAB3 RPL11 DOCK10 FBXW11 NDUFS6 TOX3 LINC00116 RPL7 HGF LYSMD2 CARTPT MZT1 ATP6V1E1 CLPTM1 NDUFA12 AP1S1 PNMA1 ATP6V1G2 GABARAP MBOAT7 MIF TUBB3 AC244489.1 CNTNAP3 CDH8 PCDHA9 PCDHA10 PCDHAC1 PCDHA4 PCDHGA10 PCDHGA6 PCDHGA5 PLEKHD1 NR1I3\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "PVALB-expressing interneuron" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: ATP1B1 KCNC2 DNAJC21 SPARCL1 SYT1 CFH TBC1D15 GRIP2 ATP1A1 KCNA2 SLC24A2 GDI1 RPL17-C18ORF32 FGF12 RTN4 IDS STMN2 MT-CO1 PREPL TMX4 ENSA KITLG OAZ1 GDA CXXC4 FAM219A LAMP5 RPS3A KLHL5 STK39 ESCO2 CSDE1 FAM3C TSPAN7 RPL15 CNTNAP3 GADD45GIP1 NUP37 PTK2B ASPDH NUDT4 THY1 MRPS21 PPIA CNRIP1 THSD7A NDUFC2 ANKRD18A MPP1 CERS6 MORF4L2 ACLY MAGED1 RP11-111M22.2 UHMK1 RSL24D1 SLC6A17 NRCAM IGF1 EGFL7 DYNLL2 PPP2R1A ASAP1 NAP1L3 PRKACB TIMP2 BTBD10 SNRPN RFK WNT5A GABARAPL2 GAP43 DKK3 CALM2 MAP1A OLFM2 ITM2B C1ORF56 HMGCS1 SCN1A SNAP25 FAIM2 RNF144B ATP6V0E2 SKAP2 OXR1 GNAQ SPTBN1 COQ10B HOMER1 SERINC3 NFE2L1 FAM19A2 NEFL MTX3 PLCB1 DNAJA1 PLCXD3 MTND1P23 MT-ND1 MTRNR2L12 MTRNR2L8 ARF5 NSF HNRNPA1P40\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "PVALB-expressing interneuron" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: RGS5 SYTL2 RAB3B ATP1B1 SLC24A2 SNAP25 ERBB4 MT-CYB CAPZA2 ATP1A1 LANCL1 KCNC2 SCN1B RAB3IP ZNF385D ZNF804A RPL18A GAD1 PGK1 MT-CO1 NDUFC2 MTRNR2L1 SPARCL1 PTPRN TUBA1B RP11-111M22.2 ATP6V0E2 CHL1 VAMP2 LUZP2 AP2B1 STXBP1 SERPINI1 ESCO2 TF CORO2B PDP1 NDUFB5 BAG4 MAP7D1 HHATL SEZ6L2 MAP1B MYO16 NUAK1 ADORA1 RTN4 BSG EDF1 IGF1 HAPLN4 TCEAL2 LRP1B SLC6A1 NACC2 KCNAB1 PPP2R2B OAT OPCML ZNF536 BCL11B RAB6B SYT13 PIP4K2A ASAP1 ATP2A2 EXTL2 SLC25A4 QKI PCDHA10 UBE2V2 TOMM70A SLC9A9 NCALD NRCAM MT-ND4 C6ORF1 COPRS YWHAQ ARL6IP5 NFIA SCN1A SEPT4 PDE3A KIFAP3 NAT8L PDGFD SUB1 IQSEC1 OXR1 BCAT1 ZBTB39 CTBP1 ANKRD18A TAC1 GABRA1 GTF2B MYO1B OPA1 NGFRAP1 INA MBP NPAS3 UQCRC2 PEX5L COPG1 CAPNS1 STRAP TXN PTPRS RNF11 DGUOK PJA2 PRNP TSPAN7 CTNNB1 KLC1 GUCY1A3 REEP5 KLHL5 CDS1 RBX1 NDFIP1 ENO1 ELAVL2 CX3CL1 PCDHA4 UTRN DCTN3 ATP2B2 ENO2 CD59 MAF CAMK2G HSP90AB1 MAP2K4 GLIPR1 UCHL1 TUBB2A ARF3 PNMA2 ATP1A3 DPP6 SYTL5 PNMA1 UBE2E3 B3GNT7 CAMK2D SNRPE RELL2 PAM GHITM LGI3 MAP1A ATP5B UQCRB SPP1 FTH1 RAB3A NRIP3 SGCD UQCRC1 FBXL16 ZNF365 CALM3 TPI1 CPLX3 RAB37 SYT1 RPL26 OAZ1 MT-CO3 PRKACB PKM RPS27A TMEM130 MTRNR2L6 CHN1 NTN4 CTNND2 VSNL1 PLCB1 PSMC5 PSAP NDUFB3 GTF2H2C_2 SKP1 PRUNE2 ETFB NAP1L3 TOMM20 MRPL52 INPP5F EPHA6 STK24 DYDC2 BRK1 NOP10 PVALB FAM3C CNTNAP3 RPL13A AC244489.1 RPL21 TBC1D15\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "PVALB-expressing interneuron" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MT-CO1 MTRNR2L1 MT-CO3 MT-CO2 MTRNR2L12 MT-ATP6 MT-ND4 MT-CYB MT-ND1 MT-ND2 MT-ND3 SYT1 RAB3B MTRNR2L6 ZNF385D MTATP6P1 NDRG4 ERBB4 SERPINI1 CALM1 MT-ND5 HSP90AA1 ATP1B1 HNRNPA1P40 SYTL2 RPL17 EPB41L3 SMS SPARCL1 INA NDUFA12 MAPK1 GABRA1 PRDX2 AES GOT1 CNTNAP3 PPM1A TAF7L NEGR1 SEZ6L2 EFR3A NMNAT2 TAC1 TSPYL1 PPIA ATP1A1 GAPDH MT3 KIF21A PPP3CA GDI1 ATP6V0E2 RTN4 RAB3C ATP5G2 FAM43A YWHAB DCLK1 SNAP25 ITFG1 SNCG PVALB MAP1A CTNNB1 RPS15 EIF4A2 TSPYL4 BCL11B PRKACB KLHL5 ACACB APBB1 VDAC1 ASAP1 UROS ANK1 UBQLN2 OAZ1 NPAS3 GAD2 MAPRE2 PGAM1 TM2D3 CAP2 SUMO3 UQCRH KCNAB2 AP1S2 ETFB EIF1AX HIC1 CLIP3 NCEH1 SPOCK1 KIAA1045 MBP RASSF8 ALDH5A1 SOD1 ATP5B PREPL LUZP2 REEP2 TMX4 TCEB2 OXR1 PJA2 C4ORF3 TMSB4XP4 ERH PCSK1N LINC01314 MAF RAB11FIP5 SLC9A9 LRRC39 MAP1B DNAJB6 ATP6AP2 RPL38 OCIAD1 CAMK2G SNX10 TKT PPP1R9B CAMK2D BNIP3 SYT11 TOMM20 CNTN1 BEX4 TPT1 ATP5I NTN4 NDUFA13 CHL1 RTN3 GAD1 RPL14P3 PNMA1 CDK5R1 MORF4L1 ANKEF1 RSL24D1 EFHD2 ARL8A FBXW11 ATP5G3 ROBO2 KIFAP3 POSTN NARS DLD NFIA ARX RP11-664H7.2 GAP43 TMEM258 KCNA2 PLCXD3 NUAK1 TUBA1B SPTBN1 SYNGR1 CPE MTRNR2L8 ELAVL2 RPL11 SNCB TLN2 CMPK1 PINK1 COX7C ALDOC NDUFC2 PRKCE COA3 PPARGC1A COX8A UQCRQ ENO2 PFDN1 COX14 MAFB CLTA CHGB TUBB3 PCDHA4 PTCHD4 PCDHGA6 TBC1D15\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "PVALB-expressing interneuron" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MT-CO3 MT-ND4 MT-CO1 MT-CO2 MT-ATP6 MT-ND3 MT-ND1 MTRNR2L12 MT-CYB THSD7A SNAP25 MTRNR2L1 MT-ND2 ATP1B1 TBC1D15 ZNF385D DNER SCN1A MTRNR2L8 SYT1 ARL4C ATP2A2 GABARAPL1 HSP90AB1 OLFM1 PRNP ANK1 SYNJ1 SLC25A6 PLCXD3 TGOLN2 COX17 PTCHD4 ATP2B2 GPR158 TERF2IP PCDHA10 LMO4 CALM2 SEZ6L2 SPARCL1 PPP3CB MT3 KCNC3 CPLX1 NDUFB7 CALM1 PET100 UTRN ALDOC BSCL2 CA8 YWHAB MARCKS NGFRAP1 CHEK1 DNM3 FBXL16 SERINC3 SLC6A1 SNX10 SUMO1 ADAM23 UBQLN2 MAP1A DPY19L1 FAM131C CLDND2 ITM2B STMN2 NRIP3 CALM3 RPS3A MTRNR2L6 TM2D3 NEFM ARX OAT YWHAZ MORF4L1 RPL15 DNAJB6 IQSEC1 SUCLA2 RP11-656G20.1 EIF1 KCNMB4 RASGRF1 NHP2L1 EPB41L3 ASNA1 DYNLT3 RTN3 EIF4A2 CNR1 NEGR1 PLEKHH2 TKT SEZ6 RBX1 CD59 VAPB GFRA1 STMN4 APP PRKCG EPS15 MAGEL2 RAB6B HSPE1 PTHLH PCGF1 NEFH INSIG1 AES PMEPA1 SNRPN CCDC85B SIRPA CERS6 GABARAPL2 VAMP2 BCAP31 FKBP8 GDI1 HK1 MAP1B DYNLL1 PTK2B NACC2 ARL6IP1 DKK3 PNMA2 RP11-664H7.2 SOX4 MAGED2 LRRC39 C18ORF32 PARM1 KCNC2 MAP2K2 RAB3IP GSG1L NBL1 CX3CL1 TSPYL4 HIGD1A GAD1 ARL8A NDUFV1 KIF21A PVRL1 PAM ELAVL2 EIF1AX GPM6A CALN1 KLC1 MAP4 WASL FUNDC1 NDUFA11 CEND1 RPL26 LHX6 TPI1 ADSS WBSCR17 BTBD11 RPL35 MORF4L2 HTRA1 NDUFC2 TLN2 ARF1 CSDE1 FTL GABRA1 FAM19A2 RPS28 VPS35 GPX4 RPS27A SYT11 PKM TMEM120A MT-ND5 ADIRF PPP3R1 ASAP1 KIF3C TUBB2A SLC24A2 ZNF385A MTPN PTGS2 PDE1C KRAS OCIAD1 UBE2QL1 BAG4 CCDC184 ISCA1 SLC38A1 NREP MTATP6P1 CLSTN1 CAMK2N2 CYCS NAPB RAP2A ACTR6 CETN2 NDRG2 THY1 CADM2 FBXO2 SYT5 SCN2B SYTL2 RAB3B CFH IDS PVALB ALDOA RPL13A ATP1A3 MIF DNAJC21\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "PVALB-expressing interneuron" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MT-CO2 MT-ND4 MT-CO3 MT-ND3 MT-CO1 MT-ATP6 ATP1B1 SYT1 MT-ND2 PRKACB FTH1 RPS15 MT-ND1 RAB3B GAD1 DYNLL1 MTATP6P1 TUBB2A SPARCL1 MTCH1 RPL11 MT-CYB COX4I1 THSD7A UQCRH MT-ND4L RPL15 GAD2 FAIM2 RPL31 RPL38 RPL32 RPL3 EIF4A2 GAPDH RPS27A OXR1 WASL ERBB4 NDUFS5 GPM6A RPL17 RPL39 PTCHD4 RPL41 PKM COX6A1 SNAP25 UQCRB SSTR2 NEFL RTN4 GHITM BEX1 CALM2 UBE2V2 STMN2 NDUFC2 FXYD6 ZFAND5 PPP3CA COX7C TSPAN7 ELAVL2 RGS4 NUDT4 SLC1A2 ATP6AP2 EID1 NEGR1 PTMA LDHB BCAT1 ATP1A3 NDUFC1 RPL21 GLUL RPL6 SLC17A7 ATP2A2 PFN2 ELAVL4 PRKAR1B TCEAL2 RAB3C HSP90AB1 IDS ITM2B DNM3 TENM1 YWHAZ RAB6B ZBTB18 PPP2R2B SRP9 RPL10A YWHAG SCAMP5 COX6C RPL37A HOMER1 OLA1 GTF3A NDUFA12 MT-ND5 SLC24A2 RTN3 BTBD11 IGF1 TMSB10 THYN1 RND3 KLC1 MORF4L1 ATP5I ATP5G2 SYNGR1 YWHAH PSAP TMX4 GABRA1 NGFRAP1 ZNF385D RPL13 SLC9A6 BEX5 RAB4A SLC12A5 NDUFB10 DCTN1 PFDN1 FKBP4 TENM3 APP ISCA1 ATP6V1F LMBRD2 MAPRE2 SNRPN SERPINI1 NDUFA11 C1ORF115 NARS HS6ST3 NDUFA5 CAMK2N2 PEBP1 NHP2 CNTNAP3 NRF1 HCN1 COMMD6 SERINC3 INPP5F MTRNR2L1 MRPS28 CLPTM1 CLIP3 PHYHIP FIS1 RPL35 TMSB4X UQCR11 FAM127A PCP4L1 MYO16 RPS26 PLOD2 WDR47 MAP2K4 PNMAL2 NXPH1 TPT1 NAP1L2 MAGED1 STMN4 TERF2IP EPHB6 PHLDB2 EFR3A BRK1 CLSTN1 TPI1 MYL6 NCEH1 ATRN YAF2 VSNL1 LAMTOR5 PNMA2 SDCBP CTBP1 CHGB SSPN CCDC25 RPS4X HIGD1A DLX1 MLLT11 CD59 RPL18A PVRL1 CALM3 VDAC1 ATP6V1C1 SDHAF1 ATPAF1 TSPYL1 PLCXD2 SOX6 GOLIM4 POLR2M GUCY1B3 HDDC2 PPIA OCIAD1 FAM134A HDLBP RHEB NDRG3 CADM2 SUB1 TAC1 TMA7 PPARGC1A ENO2 AES PCDH19 CFL1 LINC00116 COX6B1 DKK3 BLOC1S1 CCDC115 STMN1 RTN1 AP2B1 TUBA1B PHF11 MAPK1 CTNND2 CST3 AURKAIP1 NDUFB8 SNX17 SAP18 ATP5J CNR1 ROBO3 LDB2 IDI1 KCNK2 POSTN SRP14 RPL35P6 GDI1 KIF1A CTNNB1 TM2D3 SNX3 GDE1 ZNF365 PIN1 YJEFN3 NAT8L KCNAB1 SMYD1 TOMM7 FXYD7 ARL6IP5 NDUFV1 MTUS1 MTRNR2L12 PEG10 MDH2 MZT2B PTPRN2 PSMA7 PRNP GRM8 PDP1 ATP5E DPYSL2 SMIM13 TUBA4A RAB11A GABRG1 PNMAL1 PCSK1N APLP2 HRK ATP1A1 NDUFA2 CYCS UCHL1 RGS5 RSL24D1 CLTC RASGRF2 LPPR4 OPA1 VAMP2 DYNLL2 WIF1 PSD3 PREPL ACTB SOD1 BSCL2 RASGRF1 TLN2 CISD1 STXBP1 STMN3 KCNC2 ATP5F1 RPS6 MRPL11 HCN2 FBXL15 TMEM11 TMEM14A MAP1LC3A RAN PGRMC1 MBOAT7 TMEM191A NAP1L3 PPP1CB WSB2 YWHAQ PAQR9 NUDT21 ATP5G1 MAF SYT3 PRDM1 GNB1 GNAQ GPR158 SYN2 PRDX3 CREG2 SLC22A17 ENO1 ARL4D TOMM20 SNAP91 NDUFB11 PLCH1 HMP19 D4S234E RHOA PRRX1 SLC6A1 KIF21A MMP24-AS1 CAMK4 DDN RPS2 CRYM RNF11 ENOPH1 LYSMD2 SLC38A1 SYT11 POLR2L MTRNR2L8 RAMP1 SARAF SPP1 PPP2R1A REEP2 KCNMB4 MAP7D2 MTND2P28 ATOX1 UBC EIF1 B3GALT2 EIF4G2 RPL7 MZT1 PRKAR1A BSN SNCG GPX4 TUBB4A MTG1 SCN1A RAB7A ALDOA ARF5 NSF PGAM1 MTRNR2L6 C11ORF31 RP11-219A15.1 AC244489.1 MIF RPL36A PCDHAC1 PCDHA4 PCDHA9 PCDHA10 PCDHGA5 PCDHGA6 PCDHGA10\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "PVALB-expressing interneuron" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: ERBB4 MT-CO1 SPARCL1 MT-CO2 ATP1B1 ZNF385D MT-ND4 SYT1 MT-CO3 RAB3B MT-CYB UQCRB SNAP25 COX7A2 PTPRS PARM1 MT-ND2 GPM6A SELM RTN1 HSP90AB1 COX6C PEBP1 REEP5 CLSTN1 MTRNR2L1 HSP90AA1 SLC25A4 CPLX1 MORF4L1 DYNLL2 OCIAD1 FAM19A2 GSG1L RPL7 DPYSL2 DNAJC5 EIF4A2 ATP6AP2 IDS GOT1 NRSN2 MT-ND3 NDUFC2 CDK5R1 MT-ND4L SLC6A1 ARF3 SCN1A CALM1 RAN CSDE1 CLU RASSF3 UBC DKK3 NDRG4 SYN1 TPI1 BAD THY1 HOMER3 ALKBH7 HMGCS1 MDH1 SPOCK1 UQCR10 AES OXCT1 TCEAL7 NHP2L1 UCHL1 YWHAZ KLHL5 RHBDD2 CHGB ATP2A2 OXR1 AURKAIP1 STMN1 SDCBP ANAPC11 SYT13 IQCK GLIPR1 HPCA PKM YWHAQ PPP2CB EIF1AX DMTN SEZ6L DYNLRB1 PPP3R1 NCALD HRH3 SNCB COPS8 FTH1 PRKCE CNTNAP3 PNMAL1 MLLT11 MAP7D2 ACTG1 CTSD RPL12 DSTN NAP1L2 SLC7A8 OSTN CLIP2 PSAP NPAS3 EDIL3 TCEB2 LMO4 TUBA1B SERINC1 PIP4K2A PREPL PODXL RHOB UQCRH MAF RAB3A INA RPS5 RPL10A ATP6V0E2 ATP6V1B2 NGRN CA4 SLC38A1 TMEM130 NGFRAP1 COL15A1 HMP19 NPNT GUK1 CNR1 ATP1A1 ENO2 RPL38 FGF12 MTATP6P1 PSMC5 ATP6AP1 MAP1B MRPL37 QKI CALM2 PPIA PRKAR1B LDOC1 GMFB RPL37A DUSP1 PRKAR1A CLTC SUMO1 TMX4 CADM2 CLIP3 EDF1 BAG4 TOX EFR3A FTL TMEM151A TAC1 COX6A1 PPP2R1A UBE2E3 GABRA1 NSF ARL4C LSM4 USP5 SIRPA COX4I1 SLC39A10 ARF5 RPS3A LPPR4 CTBP1 SULF2 PHLDB2 PTGDS GABARAPL2 JAKMIP1 APLP2 TPT1 CALM3 MORN2 PPP3CA DLL3 AP1S1 SNX3 ATP6V1A KIF1A ARL6IP5 TUBB2B SCG2 MORF4L2 GAP43 RAB6A SERPINI1 IFI6 PINK1 RPL23A COL12A1 TBCB SH3GL2 REPS2 SCAMP5 FNDC4 ATP5B NELL2 HEG1 DNAJB6 HILPDA PLCB1 KRAS CRH CTNNB1 CA8 SLC35B1 TERF2IP MAP7D1 STXBP1 ATP1A3 CYCS IDH3A SEPT4 NDUFA1 RUNX2 NCBP2-AS2 CNTN6 NACC2 ATP1B2 RPL26 PDCD5 NDUFC1 MAP2K4 TLN2 STMN4 RPL15 PRKACB UBB TSPAN7 CCK RHEB ANXA6 STXBP6 CREB5 MT-ATP6 ENC1 KIFAP3 SEZ6 COX8A HCN1 ALCAM CKB PTHLH PJA2 RNASEK-C17ORF49 POLR2J RTN4 MRPS7 RPL11 RPL18A HAPLN4 GNAQ PNMA2 PTPRT RPL39 NDFIP1 PTMA VSNL1 NFE2L1 UTRN KCNC2 PPM1A TMSB4X NUDT21 RPL17 RPL13A RP11-20I23.1 MTRNR2L6 RPL17-C18ORF32 ATP6V0C PSMB3 PVALB LMBR1 RPL36A SYTL2 TBC1D15\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "PVALB-expressing interneuron" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MT-CO3 MT-CO2 MT-CO1 SNAP25 MT-ND4 ATP1B1 MTRNR2L1 MT-ND3 NDRG4 SYT1 MT-CYB MT-ND1 GAD1 MT-ND2 KCNC2 MTRNR2L6 ITM2B MTRNR2L12 SLC6A1 GPM6A ERBB4 PNMA2 RAB3B ZNF385D DNAJC21 RGS4 CALM2 GDI1 RELN GABRA1 SERINC1 APLP2 DNER RAB3C TSPYL1 SERPINI1 MT-ATP6 KLC1 ATP6V1A PTMA CXCL14 SCG2 PHYHIPL ACTB CHL1 NAP1L3 RTN4 STMN1 HSP90AB1 VAMP2 PRKACB SLC38A1 NGFRAP1 CHN1 THY1 TCEAL2 GAPDH HCN1 SPARCL1 GAD2 PTPRZ1 NAP1L5 SNRPN NPTXR MTATP6P1 MAP1B EIF4A2 RNF11 ATP5B UQCRH RPH3A YWHAZ PROX1 RTN1 ACTG1 CYFIP2 ENO2 RP11-111M22.2 KIF1A GOT1 ATP6V0E2 PLD3 TMEM130 SPOCK3 ARL6IP1 PRNP MORF4L1 SLC24A2 PTCHD4 IDS CAB39 FAM19A2 FAIM2 SPOCK1 FAM219A PNMAL2 TUBA1B UBE2N CALN1 SKAP2 ANXA7 SULF1 BAG4 COPG1 CNTN1 ARPC5L NPTN LBH MPPED1 CX3CL1 LINC00087 PPIF OAZ1 UBB NDUFC2 TUBB2B RTN3 CDC42SE2 SCD5 UBA1 RLIM AP1S2 ITFG1 SLC9A6 AK5 ZNF536 PCSK1N KIT SRP9 SNCB ARPP19 GABARAPL2 BCL11B PRKCB CRIM1 MTRNR2L8 PREPL PKM DPYSL2 PIP5K1B YWHAG CEND1 SKP1 EFR3A PTPRN RPL37A CALM1 PPP1CB TANC1 RAB11A MAPRE3 RAB6B CADM2 RGS12 ALDOC CLTC PPP2CA ARL8B ATP1A1 RPS15 TMTC1 JUND PJA2 PTPRM LANCL1 VDAC3 CYC1 UBE2QL1 FAM3C RND3 ATP1A3 YWHAB GHITM PACSIN1 MAPK1 NRSN2 BASP1 WBSCR17 GRIN1 GPR158 CHGB RPL15 RAP2A YWHAH NSF TPD52 COL21A1 LINC01314 SNAP91 ATP6V1C1 LRP1B PPP3CB CRKL TMEM200C STRAP PSMD12 WLS NDUFB8 KCNC3 CAMK2G PCDHA4 VEGFA SCN2B TRPC3 SRP14 RAB7A ATRN SOX11 CHP1 SV2C SEZ6L2 NUAK1 PTPRS NDUFA2 CDK5 DCC ABHD14A SLIT1 RAD23B AP1S1 PGM2L1 GLRA2 MRPS21 NDUFB5 PRKCE FKBP1B SYNJ1 DOCK10 RHBDD2 SYT4 GUCY1A3 STK39 TMEM132C CLSTN1 YJEFN3 RBX1 BLOC1S1 CPNE8 GSKIP WARS VPS35 SUMO2 SCOC NDUFB11 CFH SERPINE2 RGS5 CLPTM1 TCEA2 MTPN FTL TPGS2 NDFIP2 NDUFS5 NEFL PHYHIP SYN1 MORF4L2 ARF5 CRYAB TMEM144 RAP1GAP2 TM6SF1 JAKMIP1 NXPH2 STXBP6 TMEM35 VSNL1 NFE2L1 DPY30 TUBB2A PTPRN2 DPP6 SEPW1 CCDC124 DYNLL2 RPS5 ARF1 CLTA ELAVL2 RHOB STXBP1 ADAM33 JOSD2 BCL6 NAP1L2 SCN1B ELAVL4 NDRG3 SLC7A8 DDAH1 NRCAM PCDHB4 RPL38 HIGD1A HCN2 MAGED1 ATP9A MAGEH1 STX1B TSC22D1 CAMKK2 DYNLT3 TMEM70 CKB CDK17 ARL6IP5 YWHAQ NDUFB2 TMSB4X RRS1 SMIM13 CPLX1 COX5A VSTM2L DSTN SMS NCALD BANF1 MAST3 ATG9B USP5 LPPR4 RPS12 ANAPC11 VDAC2 ASIC4 FGF12 HNRNPH2 NDFIP1 ZBTB18 TAC1 RPS28 SNX10 VDAC1 POLR3H RRM2B C19ORF43 EIF1AX EPDR1 CCDC85B CMPK1 C11ORF31 KCNAB1 SYNGR3 PPM1A CLU ANKRD34B MRAS NAPB KRAS ATP6AP1 NUDT21 BEX2 KLHDC3 EIF4G2 C16ORF93 KIF21A HMGCS1 WIF1 CAMK2N2 TCEAL3 C8ORF4 PRKAR1A SPOCK2 PPARGC1A ATP5E DNAJC6 RPL41 GOT2 PSMA7 PPP2CB PAM WSB2 KIFAP3 ALCAM AP2B1 ATP6AP2 EDIL3 RFK GSK3A TM2D3 INPP5F ATP6V1F OCIAD1 PEBP1 ENO1 CTBP1 SNCG VAMP1 FKBP1A BAI2 OAT PPP3CA CDS1 SRM RAN FAM174A HK1 SYT17 SYNPO MT-ND4L BEX1 EIF1B CHRM2 EDF1 ARX BAALC TUBB4A DNM3 SCN1A ISCA1 SNCA ATP5F1 SCAMP5 DKK3 FIGN SNN ARL8A DNAJC4 FXYD6 C16ORF13 CAP2 DLL3 SLC10A4 OLFM1 BIRC5 REEP5 PDE1C ATP2B2 TRIM37 ARF3 ATP6V1B2 DUSP6 AES CDK5R1 RELL2 LINC00086 ABHD8 EEF1A2 CITED2 CDKN1A CAMK4 CCDC169 CLDND1 ARHGAP35 TIMP2 TKT LMBRD2 DCTN1 SLC22A17 HSPBP1 UQCRB SLC6A17 DYNC1I1 TOMM20 ATP6V1G1 CRTAC1 WDR47 S100A6 KLHL5 DUSP4 SH3BGRL3 ATP2A2 HSP90AA1 NREP PSAP KCNK2 OXCT1 MGST3 LIN9 MYBL1 ERH APLP1 EIF1 ROBO2 SUB1 PAFAH1B2 APP ATP5G3 PRDX3 RCAN3 ATP6V1G2 RPL17-C18ORF32 C18ORF32 RPL13 PPIA ARFGAP2\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "PVALB-expressing interneuron" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MT-CO1 RAB3B ATP1B1 SNAP25 MT-CO2 MT-CO3 MT-ND2 SYT1 MTRNR2L12 CALM3 MT-ND4 PAM MAP1B SERPINI1 VAMP2 ATP1A1 SARAF NDRG4 MT-CYB GPM6A OCIAD1 PREPL SYNPR CAMK2D RP11-111M22.2 MT-ND1 PRNP BASP1 SPOCK3 PCP4L1 MAGED1 CHN1 SUCLA2 ALCAM RAB3IP PLCB1 SLC22A17 CDH13 RAPGEF5 RPL21 RPL39 ARX PNMA2 MT-ATP6 DCLK1 ACTB SERINC3 GAD2 PTPRN COL25A1 PTPRS SNAP91 ATP6V1G1 ATP6AP2 MAP1A RPL7 PPP2R1A SPCS2 LMBRD2 NPTXR PGRMC1 SERINC1 SST KLC1 HSP90AB1 NXPH1 DNAJA1 EIF4A2 TBC1D15 IDS CAMK4 SCD5 ARHGAP35 MTRNR2L1 GNG2 MAPK8IP2 ATP5E PAQR8 TUBA1A TMOD2 PTCHD4 NHP2L1 CSDE1 SMS MAP2K4 CPE SNRPN CADM2 PJA2 COX4I1 ATP1A3 MRPL11 FGF12 RTN1 BCAS2 PKM DPP6 MAP2K2 STMN4 EID1 C14ORF2 MTATP6P1 NDUFC2 TOMM20 VAMP1 RHEB HSP90AA1 SOX2 FOXP2 TUBA1B TLN2 NDRG3 SLC25A5 TBCB CREG2 FAM3C GRIN1 GPX4 HPRT1 RAB6B CLIP3 SUMO1 ROBO2 TSPAN7 UBC CCDC85B EPHA6 TANC1 ARL8B TMX4 TSPYL4 PPP2R2B GDE1 PBXIP1 LAMA4 CNTN1 STXBP1 GRIP2 ATP6V1C1 CD99L2 RPS15 COX6C DIRAS1 ISCA1 ATP1A2 RPL13 NDUFAF3 USP5 RPS26 UQCRB BCL6 SLC25A4 LINGO1 LRRIQ1 PET100 SLC30A3 PRKAR1B COPS8 DSTN PTGDS WLS SULT4A1 AK5 TRAPPC1 POLR2M YAF2 UQCRC2 DYNLL1 STUB1 GPRC5B PPP2CB TIMP2 BEX2 VSTM2L SLC24A2 PI4KA APLP1 INA STXBP6 BSN RPL8 RCAN2 TPT1 RPL38 PNMA1 FXYD6 B3GALT2 CACNA2D2 GOT2 CLU MORF4L1 CAPZA2 TPPP ENO1 PRDX5 CDH8 CDK5R1 ATP6V1A SCN3B DDN MAP4 MRPL33 HMP19 TBCA NXPH2 PSD3 ENO2 ANK1 C4ORF3 GNAQ RTN4 LDOC1 MARCKS DPYSL2 APP YWHAZ NDFIP1 MT-ND3 GAPDH RPL31 PCDH19 MTRNR2L8 MAP7D2 CLSTN1 SPARCL1 DHCR24 KIF1A SPOCK1 C16ORF13 MTRNR2L6 RP11-20I23.1 RPL13A GABARAP ATP6V0C GTF2H2C_2 TSPYL1 HNRNPA1P40 RPL17 RPL17-C18ORF32 PCDHGA10 PCDHGA5 PCDHGA6\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "PVALB-expressing interneuron" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MTRNR2L1 MT-CO1 MT-CO3 MT-CO2 MTRNR2L12 MTRNR2L6 SYT1 MT-ND4 NEGR1 MT-ND3 MT-ATP6 MT-ND1 MT-ND2 MT-CYB ZNF385D EIF4A2 ATP1B1 TUBA1B PLCB1 HNRNPA1P40 CFH DNAJC21 TBC1D15 CNTN1 CYFIP2 CLIP3 LSM4 ZNF536 SNRPN APLP2 RPL35 LANCL1 SYN2 RAB4A AES RGS5 ACTB SPOCK3 VDAC3 SNAP25 ERBB4 PRNP YWHAZ RAB3C CDS1 VWC2L BTBD11 TMEM132C CALM3 ACOT7 VAMP2 REEP2 NHP2L1 KIF1A RTN3 PTCHD4 BASP1 AZIN1 CCND1 DNM3 HSPB8 PNMA2 CMAS DPYSL2 GRIN2A IDS BIRC5 NGFRAP1 LRP1B NCAM2 BCAT1 MAP1B HTR2A SYTL5 STK24 SLC7A8 EPS15 RASSF8 MAPK1 PVRL2 AKAP12 EPHA6 SCAMP5 SLC25A6 NPTX1 UBA52 TMOD2 ANXA7 SLC9A6 SLC24A2 RASGRF2 MT-ND5 BEX1 PCDH19 YJEFN3 PPP2R2C PCDHGA6 KCNC2 TMSB10 NR1I3 NPAS3 RP11-20I23.1 RPS28 ATP6V0C PGRMC1 YWHAB GMFB DCN EDF1 PTPRN2 RTN1 PNMAL1 SLC12A5 CALM1 TRPT1 RTN4 CLMN TSC22D1 SYNJ1 NAPB LINC01314 MDH1 PRKACB ALDOA PCDHB10 TUBB3 PSMB3 AC244489.1 NGRN\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "PVALB-expressing interneuron" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MT-CO1 MTRNR2L12 MT-CO3 MTRNR2L1 MT-ND2 MT-ATP6 MT-ND4 MTRNR2L8 MT-CO2 MT-CYB SNAP25 ATP1B1 MYBPC1 RAB3B ATP5J2 PTCHD4 SYTL2 MT-ND3 PET100 HOMER1 TSPYL1 MTCH1 HILPDA CCDC25 PEBP1 RAB3A NUDT21 OXR1 ABHD14A MRPS7 SLC1A2 HMGCS1 RPS15 RHEB KIF21A SYT1 CALM1 TMEM130 GAPDH MTRNR2L6 PTPRZ1 TXNIP SOX6 EIF4A2 DOCK10 MAP1B TOLLIP MIR6723 KCNC2 RGS12 NFIA CKS2 MTUS1 MT-ND1 CHL1 CLSTN1 HCN1 FKBP8 SYNJ1 SLIT1 SLC22A17 H2AFZ SRP9 STMN1 BAALC PPP3CB RPL13A BSCL2 IDS HNRNPA1P40 ATP6V1G2 AC244489.1 CFH TBC1D15 ZNF385D\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "PVALB-expressing interneuron" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MT-CO3 MTRNR2L1 MT-CO1 MT-CO2 MT-ND2 MTRNR2L12 SNAP25 SPARCL1 RTN4 SYT1 MT-CYB MTRNR2L6 CNTNAP3 ATP1A1 ATP1B1 NDRG4 MT-ND4 TBC1D15 NRCAM CDC37 C11ORF31 GABRA1 MT-ND1 PTPRS ZNF385D GRIN2A RAB3B LPPR4 MTRNR2L8 COL11A1 PJA2 ERBB4 CFL2 TLN2 EIF1AX OPCML PFKP ATP6AP2 ANK1 CDK14 TENM1 SOX6 SCD5 NDUFS6 QDPR RHEB PPP2R2B NDFIP1 CX3CL1 MAP1LC3A MAGED1 SCN1A SLC6A17 ATP1A3 C7ORF50 GNAQ SLC24A3 DUSP4 WASF1 RPL39 PKM MT-ATP6 RAD23B TERF2IP DKK3 HSP90AA1 MAP7D1 HSPA8 ANAPC11 COBLL1 MTATP6P1 COX5B RPS15 COX7C POLR2K RPS4X TOMM20 CADM2 KCNC2 NHP2L1 NIPA1 DNM3 SCN1B SPOCK2 ASAP1 RAB3IP RUNX2 SYNJ1 MAP1B OXR1 CALM2 ENO2 SUSD4 GUCY1B3 MORF4L2 GAD1 REEP2 THSD7A PDP1 TMTC1 ATP6V1F BCL11B ATP5B TOX2 RPL37A NPNT SNRPN ADAMTS17 CCK CALM1 PTCHD4 LDHB VAMP2 EFR3A SYNGR1 PCP4L1 YWHAZ SLC24A2 ADAMTS5 SYT4 MT-ND3 RCAN3 CPLX1 IL15RA TSPYL5 SEZ6L NCEH1 SLC12A5 GAPDH B3GNT1 PPA1 PPIA PLOD2 DNER RPL38 TGOLN2 GMFB CAMK2G CABP1 LANCL1 LGI3 VPS35 UQCRH CLIP3 IDS MAP1A PLD3 CLTC BASP1 PPP1CB SERINC3 RP11-20I23.1 HBA2 ATP6V0C KLC1 HBA1 ESCO2 HNRNPA1P40 BCKDHB TF CFH\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "PVALB-expressing interneuron" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MT-ND4 SNAP25 MT-CO2 MT-CO3 MTRNR2L1 SYT1 MT-ATP6 SYTL2 ZNF385D ATP1B1 MT-CO1 EDF1 MT-ND3 RTN3 SCN1A EIF4A2 MTATP6P1 OAT CALM1 SLC6A1 COX7C OXR1 TMEM155 ATP6V1E1 PLD3 PSMD8 SNCB PREPL ENO2 PPP3CA VEGFA TMA7 PRDX1 NUDT21 EIF1 LANCL1 GAPDH THSD7A STXBP1 SNCG SPARCL1 ZFAND5 FAM3C ATP1A1 SLC12A5 MT-CYB AP2B1 NDUFB2 PRNP CACNG3 NRCAM CALM3 NGRN HCN1 PPP2R1A RTN1 PRKAR1A RGS4 ACP1 TOMM20 APP MTRNR2L6 C19ORF43 GABRA1 HSP90AB1 FKBP4 SIRPA NDUFA5 ISCU MAP1A C8ORF4 PGAM1 NDRG4 MORF4L1 SLIT1 SSBP3 PTCHD4 FAM131B ATP2A2 FLOT2 TENM3 KLHL5 BCL11B MAP1B TXN PFN2 EIF4G2 PCDHGA5 MT-ND2 MT-ND4L PPP3CB SULF2 MGST3 ENC1 SOX6 CTBP1 STMN3 PCSK1N RNF208 USMG5 CHGB GPX4 PPP2R2B KCNS3 MT3 CX3CL1 TMEM132C PVALB PKM CKB CYFIP2 ATP9A STMN1 LGI2 RPS4X DYNLL1 TSPYL1 NPPC NMBR RAB6A PAFAH1B2 RPL37A MAP2K4 NCOA4 POSTN TMEM59L LHFPL3 CLU SLC25A6 KAL1 SLC9A9 SARAF RAB7A MED10 CAMK2N2 TMOD2 ARL8A MAP4 SPHKAP SPOCK2 TMSB4X ERBB4 HPRT1 CPLX2 NDFIP1 GAD1 ATP5J ABRACL UQCRH NDUFA4 MAPRE3 NDUFA11 NFIA TMEM35 BNIP3 HSPBP1 HSP90AA1 CHN1 MFSD6 GUCY1B3 RFK SYT5 VSNL1 CCK PTPRN VDAC3 RPL26 RPL18A PHYHIP SMIM13 DNAJB6 YWHAG C14ORF2 UCHL1 GDI1 TBCA SUMO3 RPL15 RHOB TCEAL5 IDS BSG ATP6V1G1 GADD45GIP1 YJEFN3 SNRNP25 APBB1 NPTN ACTG1 KIF21A MAP7D1 ATP6V0E2 RAB3C COX6C ATP6V1A TMEM191A ECM1 TGOLN2 NXPH2 UBA52 MDH1 WASL CPLX1 KIF3C FRZB PCYT2 RAP1GDS1 TMEM230 RAPGEF5 CFL1 ZBTB18 DSTN BTBD11 ARL6IP1 C4ORF3 RTN4 UBQLN2 BSN DLD NXPH1 CALM2 HK1 NGFRAP1 CHCHD2 SLC24A2 ATP5I PHYHIPL PCDH19 KCNAB3 RPS28 BSCL2 RPL3 GABARAP MIF AC244489.1 GTF2H2C_2\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "PVALB-expressing interneuron" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MTRNR2L1 MT-CO3 MT-CO1 MT-ND4 MT-ATP6 MT-CO2 MT-CYB MT-ND2 MTRNR2L12 ZNF385D SNAP25 CNTNAP3 MTRNR2L6 SPARCL1 RTN4 MT-ND3 ENO2 CLU SYT1 GOT1 HNRNPA1P40 MAP1B RRM2B MAPRE2 HGF MTUS1 NUAK1 PTPRS GAD1 HK1 TENM3 PCDHA4 ANXA7 PTCHD4 MT-ND4L MANBAL SPTBN1 RELN CTNNB1 KLHDC3 ECM1 MT-ND1 RAB4A FAM149A TKT RUNX2 CCDC85B DPYSL2 MDH1 ATP6V1E2 RPL13 MAF ABCA8 ATP5G2 DCTN1 MTRNR2L8 CALM3 RABAC1 SLC7A1 PGM2L1 BEX1 GTF3A DLX1 TIMP2 ALCAM GABRA1 PREPL MT-ND5 MTATP6P1 FAM134A RAB3B SYTL2 RP11-219A15.1 IDS C20ORF24 TF\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "PVALB-expressing interneuron" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: CLTC ELAVL2 ARL6IP1 REEP5 KCNC2 MTRNR2L1 MT-CO2 KIF21A RTN4 SNAP25 ZNF385D SYTL2 SMS CISD1 DNAJA1 MT-CO1 VAPB MAF SYT1 GNB1 NAP1L2 MT-ND2 NKIRAS1 MMD COL12A1 PGD GRIP2 MT-ND4L IQCH ADSS VPS35 RPS3A NUDT21 CAMK4 DCLK1 CAMK2D ELAVL4 RAB5C KRAS SOX6 CLEC2L SCN1A GMFB MYEOV2 GNAQ STMN2 RND3 RAB11A LPPR4 ATP1B1 KCNAB1 ATP6V1A KLC1 ARHGDIA TAC1 PNMAL2 KLHL5 OLA1 NGFRAP1 VSTM2A ACTG1 EIF4A2 EIF1B YJEFN3 RP11-111M22.2 PNMA2 CLU RNF11 AKAP12 PTCHD4 ARL6IP5 KCNA1 COX7C ANXA7 YBEY KIF1A NDFIP1 MT-CO3 CHGB PEX5L COX7A2L MYO1B FBXO2 PLCXD2 ATP6V1B2 HHATL SCN1B CADM3 ENSA MTRNR2L12 FLT1 OXR1 ERBB4 IDS NGRN MTRNR2L6 RPL6\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "PVALB-expressing interneuron" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MT-CO3 MT-ND3 MT-CO2 MT-CO1 MT-ATP6 MT-CYB MT-ND4 MT-ND2 MT-ND1 MAF MTRNR2L12 MTRNR2L1 TMSB4X SYT1 SLC6A1 ATP1B1 PRKAR1B GRIN2A MT-ND5 RP11-219A15.1 GPM6A BIRC5 HSP90AA1 MTRNR2L8 MTRNR2L6 MTATP6P1 CAMK4 ATP6V1C1 MPPED1 ZBTB39 FAIM2 SCOC ITFG1 RPL31 ALDH5A1 PCDH19 VDAC3 BEX4 ATG9B INPP5F PRNP APLP1 BEX1 LAMP5 SYNGR3 PHYHIP DYNC1I1 TSC22D1 NDUFB4 NTN4 ARL8B UQCRB EPHA6 CBX6 NPPC ETS2 OSGEPL1 SPOCK1 PPP2R2C C2ORF47 PTPRT PLAUR CFL1 MDH1 LIN7B CPLX1 PLCB1 TOLLIP WLS CALM1 PREPL KLC2 CALM2 PDGFD GOT1 NRIP3 COX7C PLD5 MAP1B PPP3CA LGI3 RPL37A RASL11B EFHD2 ROBO2 TCEAL2 CD24 SV2C SNAP91 RPS28 SYN2 PCSK1N PEBP1 GAD1 ARL6IP5 RAB6A MAPRE2 DYNLL1 MAP1LC3B IDS RPL18A SERF2 DNAJC21 TBC1D15\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "PVALB-expressing interneuron" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MT-CO3 PLP1 MT-CO2 MT-ATP6 TF MT-ND1 MT-ND3 MT-ND4 ZNF385D MTRNR2L1 SYTL2 MTRNR2L12 FTH1 ATP1B1 MT-ND2 MT-CO1 MT-CYB SLC24A2 SPARCL1 GOLIM4 APP MTATP6P1 PLCXD3 MTRNR2L8 RTN4 RBP7 ST18 ARPC4 KLC1 CREB5 EIF4A2 GAPDH TMOD2 GABRA1 PTMA ARL6IP1 SUMO2 TLE4 PACSIN1 YWHAG NAP1L3 CALM1 MGST3 DPYSL2 CLDN11 CNP SCOC COL9A2 SULT4A1 COX7C CDK5R1 MEPE PEBP1 ELAVL2 TBC1D15 MTRNR2L6 SNAP25 ARFGAP2 CALM3 RPL15 MRFAP1 UBE2V2 CPE BEX1 APOD TPT1 SOX4 COX5B INA SNRPN ARL8B MT-ND5 ATP1A1 PPP3CB PTPRN RAB6C-AS1 NCDN ENO2 PCYT2 UBE2M RPL11 CSRP1 ELMO1 NEGR1 CLSTN1 MYBPC1 GAD2 NEFH MT-ND4L NDUFA5 ARL6IP5 RAPGEF5 MAP1LC3B PPP2R1A PCDHGA5 OPA1 C18ORF32 WBSCR17 MTCH1 CREG2 DYNLL2 SMIM13 TMEM35 MBP LGI3 CACNA2D2 NUDT4 YIPF3 YWHAB AP2B1 SNCB UBE2N SSTR2 NRCAM DKK3 RCAN2 MAP1A APLP1 CAMK2D EID1 NDUFB7 MLLT11 CPLX1 H2AFZ ZBTB39 ZNF804A NFIA OAT RAB3IP VWA1 MOBP TMEM51 QDPR BTBD10 ASCL1 QKI PTGDS TPPP RP11-597D13.7 SQLE VDAC1 TOLLIP PTPRM DIRAS1 MAPRE3 GAP43 PPP2CB PCSK1N ATP5B NPTN B2M SCN1B KITLG SYNPO ANAPC13 CKB KCNC2 THOC7 ANKRD18A CFH TMEM200C SKP1 SUMO3 YWHAZ NGFRAP1 NINJ1 FAIM2 NEFL BCL11B CAMK2G SARAF TTYH2 HSP90AA1 DNM3 TRIM35 MAG RTN3 SYT1 STK24 MAP1LC3A CISD1 BTBD11 PGK1 CLTC UQCRB ZNF536 RASGRF2 NDUFA12 PI4KA ATP6V0B ATP2B2 RAB1A ERBB3 TSPAN7 SULF1 BCAS2 SERINC1 PEX5L CRIM1 PIK3R1 TERF2IP PAQR8 GAD1 MYRF MEGF10 TXNIP COX5A TTN NAP1L2 CALM2 ASAP2 MAF OXR1 PSAP BASP1 SRP9 SCAND1 SOX6 GRIK1 GUCY1B3 BIRC5 NGRN NSF RPL21 GTF2H2C_2 RAB3B DPY30 ALDH5A1\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "PVALB-expressing interneuron" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MT-CO1 MT-CO3 MT-ND4 MT-CO2 MTRNR2L1 MTRNR2L12 MT-ND1 MT-ND3 MT-ATP6 MT-CYB ZNF385D OXR1 ATP1B1 MTATP6P1 SYT1 ACTB MAF CYFIP2 RAB3IP UQCRC2 LGI3 CALM2 STX1B RAB11FIP5 GPM6A ATP1A1 EIF4A2 NXPH1 ZNF804A EPHA6 NEGR1 VSNL1 ERBB4 SNX10 PTCHD4 MT-ND2 PNMA2 SNCB CFH TF MTRNR2L6 BIRC5 MTND1P23 SNAP25 TAC1 PPP2CB RBX1 SRP9 CDK5R2 ARF1 PTPRN2 PGK1 INPP5F PLD3 RHBDD2 TENM3 RPL18A MFSD6 BNIP3 TUBB2B COX8A APP PRKACB POLR2J HGF C1QL1 PPP1R14A PPA1 ARL6IP5 ARX KIFAP3 NPAS3 GAD2 CREG2 PPP2R2B SNRPN NAP1L2 HMP19 RPL13A CPLX1 TMEM155 GABARAPL1 NFE2L1 GLIS3 SERPINI1 ENO2 CALM1 NPPC SULF1 BCL11B BCKDHB STMN3 HSP90AB1 PTMA UBB BASP1 NGFRAP1 PRKAR1B PIP4K2A RPL35 MRFAP1 IDH3A TSPAN7 REPS2 PPP1CB MTRNR2L8 PEG10 OLFM2 SRP14 ATP1A3 PHYHIP AES QKI CLU MPPED1 CHMP4B NAP1L3 NPTN NDUFA12 RAP2A TMEM132C FAM19A2 UBQLN2 SPCS2 TPT1 SLC24A2 ECM1 CAMKK2 SEZ6L2 VPS35 PEBP1 THY1 TSC22D1 EIF1AX PSAP SDCBP VDAC1 ARF3 TOMM20 COPG1 CLTC GRIK3 RPS26 RPS27A DYNLL1 CX3CL1 NREP USP5 ISCA1 UQCRH CDC42SE2 COX6B1 GUK1 MAP1B TUBA4A SLC9A1 SPOCK2 CADM2 VDAC3 TMEM230 PRNP NDRG2 DNM3 SYNJ1 MORF4L1 ACP1 PKM WLS PJA2 TPRG1L ADSS OPA1 PDE9A PLCXD3 APLP2 SPARCL1 STXBP1 PPP3CA GAD1 GABRA1 ACTR1A MGST3 PTPRM PTGES3 ALDOA LDHB IDS PCDHA4 PCDHAC1 PCDHA9 PCDHA10 TBC1D15 SYTL2 RAB3B\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "PVALB-expressing interneuron" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: TMSB4X PREPL ATP1B1 SNAP25 ZNF385D SNCA OXR1 PAM NGFRAP1 NAP1L3 VAMP2 PRNP STXBP1 RAB3B HSP90AA1 MT-CO1 KIF1A RTN3 SLC24A2 SYT1 MT-CO3 PCDH17 ATP6V1A MT-ND4 VSNL1 GPM6A NPY ACTG1 FAM3C IDS TBC1D15 GDI1 GRIK1 MTCH1 H2AFZ NRCAM ELAVL2 PPIA ARL4C UBA52 SPOCK2 GPX4 TRHDE TSPAN7 DPYSL2 APLP2 LMBRD2 PRKACB NAPB GAD2 RPL37A GNG2 GRPEL1 NEGR1 EID1 MAPK1 SPARCL1 SYT4 RTN4 NPTN MT3 VCAN PNMA2 SLC22A17 FTH1 RTN1 KCNC2 STMN1 CALM1 EIF1AX PEBP1 MT-ND1 FAM219A SKP1 FXYD6 JUND RPL17-C18ORF32 ENO2 TUBA1B PKM DHCR24 SERINC1 TSPYL1 PHYHIPL SLC25A4 CALM3 PEG10 MAP1B TF ARFGAP2 TOMM20 CITED2 AZIN1 ISOC1 PPP2R4 ATP2A2 DUSP1 SUMO2 SST KIFAP3 TPPP NDUFB4 STMN3 ATP6V0E2 SRP9 LYPD6 THYN1 TMEM59L AHNAK2 CCK SOX6 RPL35 STX1A ERBB4 RAB3C C9ORF24 PFDN4 ATP6V1F FLOT2 B3GALT2 GDF10 PACSIN1 MGST3 ACTB PGRMC1 ATP2B2 TH PGM2L1 CAMKK2 NAPA NXPH1 STK39 PTPRT RPL21 TIMP2 PSMD8 APP TUBB4A EIF1B WSCD1 INA SSBP3 SYNPR PSMB5 TMOD2 HK1 BCL11B SLC9A6 ARX UBC FBXO8 TMTC1 DNAJC4 GADD45GIP1 PIK3R1 COX4I1 CHN1 PODXL ARHGAP35 BNIP3 CLTA MLF2 CDK5R1 MORF4L2 ARPC4 TERF2IP PLCH1 SLC7A5 CADM2 TUBB4B RPL23A CREG2 YWHAG NDUFA2 ATP1B2 TBCA NCALD NFE2L1 SMAP2 RAP1GAP2 PEA15 DNM3 RPL7 PSMC3 ITM2B RHBDD2 KRAS SH3RF1 VWA5A ARHGDIG MT-ND3 UHMK1 RP11-111M22.2 ACAT2 KIF3C LRRIQ3 UQCR11 RAN NDUFB8 COPS8 PPP1CB QKI SNRPN GRINA CAMK2N2 KCNAB1 LINC00116 GSK3A ZCCHC17 NDUFC2 HIST1H2AC MAPRE3 ITFG1 SYT11 WBP11 CLSTN1 MRPL52 UCHL1 LPPR4 PHYHIP RP11-219A15.1 MT-ND2 CALM2 TMEM150C ARL6IP5 YJEFN3 PLOD2 GMFB SNCB LGALS1 CTSD KLHL12 HMGCR NAA38 PNOC GABPB1 MAP4 MAP2K2 ABHD8 SCN3B ATOX1 RPS28 CMAS S100A6 B2M SERINC3 CRYAB MT-CYB ARL6IP1 GALNT14 PRKAR1A PRKCB GNG3 SULT4A1 SYN2 EXTL2 MTRNR2L8 UBE2M YWHAH MTRNR2L1 SCN1A MPPED1 EIF4A2 NEFL CAPZB KIF5A PARM1 WIF1 CAMK2D RHOB RAB3IP CPE BASP1 TPT1 GYG1 SUB1 MYL6 DCC PJA2 TSPYL4 KCNIP1 PPP3R1 PTPRN SYNGR3 CTBP1 UBE2QL1 MORF4L1 GAD1 RPL13A NAP1L5 KLC1 ZNF365 IQSEC1 TXN NDUFA5 PITHD1 KCNAB2 CLU SPOCK3 DIRAS1 RPH3A OAT MT-CO2 SEMA4G TCEB2 WASF1 EDN1 TPGS2 SLC32A1 DLD EGFL7 CFH EPHB6 ALDOA RP11-20I23.1 NSF BSCL2 ATP6V0C PCDHA10 PCDHAC1 PCDHA9 PCDHA4\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "PVALB-expressing interneuron" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: ZNF385D MTRNR2L12 SLC6A1 VSTM2L MT-CO2 MT-CO3 NDUFA4 NDRG4 MT-CYB GRIN2A HSPB3 CFH COX7C ATG101 MTG1 MT-ND2 DNAJC21 SNAP25 ARFGAP2 ATP1B2 NAT8L MT-CO1 RPL38 TOMM22 SYT1 SNRPN ANKRD18A GDI1 PTCHD4 CABP1 NCALD ATP2B2 IDS PJA2 TSPYL1 NAP1L5 RAB11A MT-ND3 UBC CYCS GLRA2 OAT STAG3L5P MORF4L2 VAMP1 GOT1 ELAVL2 PREPL NDUFA12 SARAF RPH3A MT-ATP6 NEGR1 KCNC3 SERPINI1 PPP3CA ENO2 RASGRF1 MT-ND4L RTN1 WASL STMN1 RND3 TMEM59L PPP3CB CALN1 SCN1A GAD1 REEP5 GAD2 LANCL1 DMTN ETS2 ATP5A1 TSPAN7 MT-ND4 IGSF21 VAMP2 NPTX1 RTN3 ALDH5A1 ETV5 PSAP TGOLN2 TUBB2A CDK5R1 CLTC ERH SUB1 SLC12A5 SYTL5 UBE2V2 TMEM155 PSMD12 PCBP1 RAB11FIP5 MAPK1 PRKAR1A CTNND2 BSCL2 RPL7 RPL26 RP11-111M22.2 PCDHGA5 PCDHGA6 PCDHGA10\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "PVALB-expressing interneuron" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MT-CO1 MT-CO2 MT-ND4 MT-CO3 ATP1B1 MTRNR2L12 MTRNR2L1 SYT1 MT-ATP6 SPARCL1 SNAP25 MAP1B GAPDH MT-CYB RTN3 MT-ND3 PKM KCNC2 MTRNR2L8 GAD1 MTATP6P1 SLC38A1 CALM1 MT-ND2 GABARAPL1 ATP1A1 DNER ZNF385D MTRNR2L6 APP ERBB4 GDI1 ARL6IP1 CLTC ACTG1 ELAVL2 ATP1A3 RTN4 SERPINI1 VAMP2 COX4I1 MORF4L1 GAD2 CKB CADM2 SLC24A2 RGS4 EIF4A2 SNCB PRKAR1A ATP6V1B2 PRKACB TAC1 UQCRC1 HSP90AA1 STMN2 DNAJC21 PLD3 MT-ND1 RTN1 PREPL ACTB CLSTN1 ENO2 ATP6V0E2 NDRG4 TSC22D1 PTPRN2 ATP2B2 SCAMP5 PGAM1 NGFRAP1 CAP2 APLP1 OXR1 NAPB MDH1 SLC12A5 OSTN DNAJA1 APLP2 ITM2B ARL6IP5 PEBP1 TCEB2 FAIM2 PRNP SLC22A17 ATP5I ARF1 SNRPN NDFIP1 SULT4A1 PSAP CEND1 NCDN NAP1L3 SPOCK2 PDCD5 TSPYL1 ATP2A2 RAB6A PTPRM RHEB LBH SUB1 DPYSL2 KIF5A KCNAB2 MAP1LC3B CCDC85B TMSB4X NAP1L5 SYT13 DCLK1 ATP5B GHITM MTPN SKP1 NCEH1 ARL4C SPCS2 SERINC3 CALM2 RAB3C GPX4 LANCL1 SLC9A6 TAGLN3 CPLX1 SLC6A1 SERINC1 AES NAT8L CALN1 NDUFB1 OAT STXBP1 PPIA IDS NSF ATP6V0C RP11-20I23.1 NR1I3 MTCH1 YWHAB TSPAN7 HMP19 PJA2 GNB1 EIF1 VGF FKBP4 SPOCK1 SUMO3 SLC25A5 CYCS VSTM2L PNMA2 ATP5A1 SUMO2 RPL41 RASGRF2 LYNX1 QKI YWHAZ GABRA1 OCIAD1 SULF1 NXPH1 KLC1 SEZ6L2 H2AFZ ENOPH1 PRDX2 CNTNAP3 RPL15 CMPK1 HS6ST3 RAB11A RAP1GDS1 SARAF MAP1A ZFAND5 COX7A2L ALDOC NAP1L2 RPS15 SLC6A17 CNTN1 ATP9A MAF UCHL1 YWHAG CALM3 PRDX3 ISCA1 INPP5F MLLT11 SPTBN1 MAP4 OLFM1 BASP1 KLHDC3 DYNLT3 GPM6A MAP2K4 PPP2CB HCN1 GNAQ BCAT1 NDUFB7 SYN2 IDH3A TIMP2 NDUFA13 SEPW1 PITPNA CDK5R2 PPP2R2C HK1 RAB6B SYN1 ADSS RAB3A TCEAL2 NDUFB8 GOT1 RPL8 DYNLL2 CAPZA2 PIN1 TENM3 OAZ1 COX5B HNRNPH2 SNAP91 WIF1 DNAJC6 KIF1A UBE2M VDAC1 CLIP3 COX6C TUSC2 AP2M1 PEA15 NTN4 CRKL ITM2C PTPRT NDRG3 FSCN1 HOMER1 SLC32A1 MAFB KCNS3 MT-ND4L BSN CCDC183 FGF12 MFSD6 BTBD10 ENO1 B3GNT1 ALDH5A1 HSP90AB1 DKK3 PPP2R1A MYL6 FTL RPL21 EFR3A BTBD11 CTNND2 GUCY1A3 NARS EIF4G2 PAFAH1B2 SLIT1 WASL PPM1A GRIN1 RAB1A ARX SIRPA ATP6V1A PNKD ARF3 MB21D2 EPB41L3 TOMM7 RAP2A RAB7A PGM2L1 PNMAL2 KCNK1 RCAN2 CISD1 FBXW11 MORF4L2 UQCRB DYNLL1 PCDHGA6 PAM RAN PCMT1 ADAMTS17 REEP2 STUB1 SCN1A NMNAT2 HAPLN1 EPDR1 SELT KCNAB1 PLCB1 CNTNAP5 NDUFAB1 PTPRS ATXN10 TOMM20 CCDC184 RRM2B GUK1 THY1 SCN2B NAA38 PRKCE PEG10 SLC7A1 OPCML COX8A SLC7A5 DNAJB9 RPL13 CD59 YWHAH TCEAL3 RPH3A ELAVL4 VDAC3 ARL2BP MYL12B WBP2 HSPA8 CTBP1 RPS28 TUBA1B TMA7 PPP2CA MAP7D2 SNCG PAK1 NFE2L1 BSG DNAJB6 SH3BGRL3 SOD1 ATP5G3 PPARGC1A UBB NDUFV1 GADD45GIP1 TPI1 COX6A1 PEX5L NDUFB2 TMEM35 MT-ND5 SERP2 ARL4D ISCU ATP6AP2 EPHA6 RND3 RNF208 NTHL1 NEK7 TBC1D15 C18ORF32 RPL17-C18ORF32 TUBB3 HSPB8 GOLIM4 LHX6 BAG4 RGS5 HSD17B6 NEFL SAP18 RELL2 IGF1 TPRG1L RRAGA YAF2 GORASP2 POMP NACC2 TMTC1 SOX6 CMAS MIF SHD VSNL1 NEUROD6 STMN4 MFN2 CAPZB AZIN1 PIP5K1B DIRAS1 NDUFA4 PNMAL1 ALDOA OPA1 SYNPO TMX4 FUNDC1 CITED2 GMFB C1ORF115 ATP5F1 LAMTOR5 YWHAQ GRIK3 RHOA PHYHIP ZNF365 EPHB6 SCAND1 DPP4 HES4 PGRMC1 C4ORF3 PLCXD3 SLC25A6 D4S234E RAB2A TOX2 VDAC2 PSMD12 BNIP3 UBE2V2 CFL1 THSD7A VPS35 STX1B MRPL12 MDH2 HOMER3 C1ORF52 ANAPC11 STMN1 PFN2 HMGCR NPTXR UBA52 FAM19A2 C19ORF70 ATP5G1 REEP5 IQSEC1 IDI1 DNAJC5 MPI MRPL33 SLC25A22 MAPRE2 SCN1B PTPRN CPE CAMK2G NRCAM PHB MAPK8IP2 UQCRFS1 PCSK1N TPT1 C1QBP BRK1 KCNC3 CTSD SH3GL2 ACTR1A FARSA DCTN1 SNRNP25 GRIN2A PDP1 RASSF8 ISG15 HAPLN4 TOMM22 RAB27B HIGD1A C1D RPL23A GPX1 PSENEN LINC00087 CDS1 ACOT7 CPLX2 NPPC NRN1 PPA1 LGI2 TMEM141 CYSTM1 DHCR24 AP2B1 KIFAP3 UBA1 PITHD1 MMP24-AS1 SYT11 SELM FAM127A SRP14 SYPL1 SERF2 FAM134A MAPRE3 KIF3C GLO1 NHP2L1 AURKAIP1 NDUFA1 ANAPC13 PTGES3 SRP9 RPL11 SALL2 CHN1 ATP5E EIF1B GUCY1B3 MLF2 C16ORF13 STK39 NRIP3 USP5 WASF1 TMEM132C WBSCR17 SYNJ1 TMSB10 EIF1AX FAM163B LSM4 KLHL5 UQCRQ ZBTB18 GPD1 UBE2QL1 CTNNB1 LINC01314 UQCRH FKBP1B AP3S1 PFDN4 DNM3 TMOD2 AKAP12 MYL6B PRRX1 ITFG1 LDOC1L CLDND1 MTX3 SLC39A10 TMEM130 ASAP2 PCDH19 NDUFS6 NDUFS5 KCNF1 SRP54-AS1 APBB1 COX14 OLFM2 YIPF3 TRIM37 SPRYD3 RPL35 GTF3A ZCCHC17 PRKCB PACSIN1 CHMP4B FNDC4 PRDX1 TBCB VAPB CIAPIN1 ARF5 GRIN3A CHST11 SEC61G DYNLRB1 LMBRD2 COX7A2 ATRN NUDT21 KIF21A MRPS28 WARS GOT2 LMO4 FBXO2 NBL1 FAM131B INA SMIM13 JUNB TERF2IP NCBP2-AS2 PLCXD2 NDFIP2 CAMK2N2 SYNGR1 TMEM150C PRDX5 SUSD4 FKBP8 TPGS2 UBL5 RHBDD2 ACP1 RABAC1 PSMC5 FAM3C MPC2 C19ORF43 PTCHD4 TENM1 GLIPR1 CLU RPS4X BHLHE40 MAP2K2 ACTR10 TDRD7 SNN GNG3 MYEOV2 POLR2I CDKN2D POLR2K C14ORF2 C18ORF42 MZT1 CLEC2L RAPGEF5 COPE PFDN1 MRPL55 BEX4 COX6B1 RPL12 NUDT4 C12ORF57 UBE2D2 VAMP1 ATP5O KCNA2 SPOCK3 SLC7A8 VSTM2A KIAA1024 CAPNS1 RBX1 ECM1 MRPL47 CLPTM1 AIMP2 CCDC124 PRELID1 SNX10 FIBP NKIRAS1 FBXL16 PNMA1 ATP6V1G1 PFN1 COL9A3 STMN3 SYNGR3 NDUFB5 BEX1 PPP3CA LPPR4 MTND1P23 TUBB2A ELMO1 FBXL15 MAGED2 CDC42SE2 COX7C CX3CL1 HMGCS1 MAP1LC3A PRKAR1B PI4KA ARPP19 MBP PSMD2 PARM1 NEGR1 TRIB2 FAM131C RPS5 YJEFN3 SYT17 MAP7D1 PPP3R1 GDE1 MAPK1 LGI3 CAMKK2 WNT16 SNCAIP UBE2N MTUS1 SYT4 CDK5R1 SLC25A11 ATP5J2 EPS15 TPPP CHCHD2 C1ORF233 NCALD COPS7A SRD5A1 EXTL2 NIPA1 NDUFA5 TMEM14A TANC1 VEGFA NCOA4 ARFGAP2 GABARAP NGRN PSMB3 RNASEK-C17ORF49 PPP1CB FTH1 HSPB1 BSCL2 TUBB PCDHA9 PCDHA10 PCDHA4 PCDHAC1\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "PVALB-expressing interneuron" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MT-CO1 MTRNR2L1 MT-CO3 MT-CO2 MT-ND4 MTRNR2L12 NAP1L3 MT-ATP6 MT-ND3 MTRNR2L6 MT-ND2 MT-ND1 MT-CYB MTRNR2L8 HMGCS1 MT-ND5 CAMK2G SNRPN PRKCE SPARCL1 OPA1 PIP5K1B CSDE1 ATP6V0B ERBB4 SYT10 FSTL5 PDLIM5 MTCH1 CLSTN1 JUND ANK1 BCL11B NAT8L CKB ATP5A1 SCN1A MARCKSL1 NRGN MZT1 HMP19 RP11-111M22.2 RASSF8 GRIN2A SYN1 PRUNE2 PHYHIPL C3 OPCML KAL1 MAP1B TMSB4X SEPT4 SYT13 CHGB NDUFA4 NPTXR CCDC25 CEND1 RTN1 KCNAB2 CALM1 SNAP25 ALCAM SSBP3 PNMA2 TSPYL1 OR6D1P SERPINI1 RTN4 AURKAIP1 RPL15 OXR1 RBX1 MTATP6P1 HPRT1 PPP2R4 MYO1B PREPL SEZ6L2 NDUFA1 SOX6 STX1B FAIM2 KLHDC3 MT-ND4L CNTNAP3 NGRN ANKRD18A CFH TBC1D15 DNAJC21 ZNF385D RAB3B ESCO2 SYTL2\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "PVALB-expressing interneuron" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MT-CO3 MT-CO1 MT-ND4 MT-CO2 SYT1 SPARCL1 MT-CYB MT-ND3 MTRNR2L1 ATP1B1 MT-ATP6 SNAP25 MAP1B CALM3 NAP1L3 MTATP6P1 HSP90AB1 ZNF804A CEND1 HCN1 CALM2 MT-ND2 NDRG4 ATP2A2 PREPL THSD7A CFL1 SUB1 NACC2 GUCY1B3 ITFG1 SPOCK2 LMO4 SLC22A17 CAMK2D PRNP MTRNR2L12 UCHL1 RTN4 GPM6A RAP1GDS1 MT-ND4L ZFAND5 ANKRD34B SERINC1 GOT1 SARAF EIF4G2 KIF1A KLC1 NUAK1 ATP6AP2 ELAVL2 MTRNR2L6 TBC1D15 ATP6V0E2 SNRPN NDUFV1 ARPC4 SNCB SEZ6L KITLG GAPDH PCDH8 CRH AP1S1 SYT3 BSG RGS12 ACTG1 CLDND2 CDHR1 GDI1 SPOCK1 DNAJC6 HINT1 EIF1 EGR3 TRMT112 YWHAB CALM1 NPTN CLTC NDUFB5 EID1 RPL37A STX1B COBLL1 TSPAN7 AK5 CAMK4 SPTBN1 TSC22D1 OLFM1 PCDH19 MFGE8 SLC24A2 ATP5E MYL6 ATP6V1A SIRPA HOMER1 ATP5B HMGCS1 UTRN LRP1B YWHAZ MORF4L1 KIFAP3 NDUFA5 TRIM37 TMEM59L PTMA IDI1 LANCL1 EPB41L3 TKT CDK5R2 MAGED2 PRKAR1A TOX3 MORF4L2 CAPNS1 YWHAG SP9 NAP1L2 RAB11A TAGLN3 BEX1 ATRN FAM19A2 OPA1 PITPNA LINC00116 FSTL5 NDUFB2 PRDX3 HSPA8 GABARAPL1 RPL13 APLP2 PGK1 ATP5I ETV5 CYCS IQSEC1 CADM3 PACSIN1 RBX1 CAMK2G ENSA PAK1 SSPN POLR2M MDH1 ARL4C THY1 IFI6 MTRNR2L8 PSAP MT-ND1 UBE2V2 KCNAB2 WASF1 PPP2R1A AES SLC39A3 TMOD2 BRAFP1 BSN C1ORF56 SCD5 PTHLH RTN3 NAPB DLX6 BCL11B TBCA NCDN SDC2 ATP1A3 ARL2BP SLC38A1 COL15A1 MYEOV2 PNMA2 VAMP2 DNER CPLX1 PEBP1 EPS15 SERPINI1 SOX6 VDAC3 AKAP12 EIF5A2 MAPK8IP2 LPPR4 TGOLN2 FBXW11 MAP4 NGFRAP1 ERBB4 PPDPF CNR1 TOX2 SYN1 SLC9A6 VSTM2A MAP1LC3B KCNIP1 CLTA LHX6 SGK223 ASAP1 QKI PGAM1 ZNF385D PLEKHD1 NSF NGRN GABARAP CTC-575D19.1 BSCL2 SERF2 ATP6V1G2 PCDHA4 PCDHA10 PCDHA9 PCDHAC1\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "PVALB-expressing interneuron" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MT-ND4 MT-CO2 MT-CO1 ATP1B1 MT-CO3 MTRNR2L12 GAD1 MTRNR2L1 RAB3B ZNF385D PGK1 NDRG4 ERBB4 KLHL5 MT-CYB MEPE TSPYL4 PFDN4 YWHAG NAP1L2 MT-ND2 RAB3C GLRA2 GPM6A HAPLN1 SPARCL1 ARL4C CDC42SE2 CHL1 CTBP1 MT-ND5 CHP1 LANCL1 GNAQ SLITRK1 LYNX1 DNER MTRNR2L6 RPL15 ZNF536 LDB2 SPOCK3 SNX10 PEX5L MAP1A NEFL RGS12 KCNC2 WARS NUDT21 MAP1LC3B FTH1 PRKCE CNTN1 SKP1 GNG2 KRAS FSTL5 CCDC25 NGFRAP1 FNDC4 ITFG1 RPL35 CTNND2 TUBA4A SPTBN1 MORF4L1 UCHL1 PNMAL2 GRIP2 CD59 RP11-111M22.2 VAMP2 GAPDH NDFIP1 SCN2B FXYD6 TSPAN7 TCEB1 SRP9 CLIP3 NAPB MYL6B CDK5R1 RAB11A HHATL CALM1 NPTN FAIM2 STMN3 SYT1 MRPL47 UQCRB TPGS2 KCNS3 PNMA2 PJA2 CLSTN1 LMBR1 MT-ND1 TSPYL1 PIP5K1B MTRNR2L8 MAPRE2 ADD2 MRPS21 MT-ND4L GUCY1A3 SNRPN RTN3 TM2D3 MT-ND3 TOMM70A CDS1 NRCAM MARCKS GOT1 BEX2 ZFAND5 YBEY NDUFS5 PNKD AES MFSD6 CLSTN2 RGS4 GRIN2A ALCAM ATP2B2 WBP11 FAM219A EPB41L3 OXR1 ENO2 MAP1B GABARAPL1 OR6D1P TCEB2 SLC6A1 EIF1AX TOX3 CALM2 RAB6A APBB1 EPHA6 RPL37A GPRC5B ARL6IP5 TLR4 BIRC5 PGM2L1 POSTN BRK1 CACNA2D2 SYNGR1 CYFIP2 SLC25A4 ELAVL2 PEA15 LUZP2 TUBB3 NSF IDS ESCO2 HNRNPA1P40 PLEKHD1 NR1I3\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "PVALB-expressing interneuron" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MTRNR2L1 MT-CO1 MT-CO3 MT-CO2 MTRNR2L12 MT-ND4 MT-ATP6 MT-ND1 MTRNR2L8 MTRNR2L6 MT-ND2 MT-CYB MT-ND3 RAB3B RP11-111M22.2 ATP1B1 SYT1 ZNF385D SPARCL1 CALM1 DNM3 ARL6IP1 SERINC1 RGS5 SNAP25 CDK5R2 ARL4C KLHL5 MTATP6P1 THY1 PPP2R2B KCNC2 EPHA6 DPP6 SEZ6L2 APP PPP3CA HIGD1A FTL PCDHGA5 NAT8L TPT1 PLCXD3 GABRA1 SCN1A HSP90AA1 UQCRB PNKD DNER BIRC5 GAD2 DCLK1 FBXL16 EDIL3 ENO2 SLC6A1 TKT PRKACB PTMA ARF3 SYTL5 MPPED1 KIF1A RAB3IP CHN1 SYNGR1 ATP1A3 CPE RTN4 MTND1P23 MAP1B CALM2 C12ORF57 SLC12A5 HNRNPA1P40 NR1I3 GNG3 CBX6 MDH1 KCNAB3 CALN1 RSL24D1 FGF12 CDS1 ASPDH GDI1 GRIN2A NDUFA12 MAGEH1 ATP9A MAP2K2 HMP19 STMN1 ENO1 RPS6 TBCB SERPINI1 MTG1 CALM3 PAFAH1B2 MAPK1 PSMC5 NFIA SNCB KAL1 SCAMP5 DNAJB6 GABARAPL1 FAIM2 TMEM132C ARF1 ATP1A1 PANX1 SPOCK3 MORF4L2 ARPP19 MFSD6 BSG SNAP91 HAPLN4 SPOCK2 DEXI ATP1B2 GAD1 SYNGR3 SLC38A1 MPC2 RAB6B DLX1 NEGR1 PRDX1 LPPR4 NDRG4 MYO1B RAB5C RPS28 D4S234E TSPAN7 NXPH1 C16ORF93 INPP5F RBX1 ATP2B2 PSD3 EIF1AX QKI NUDT4 GAPDH RP11-175B9.2 KLC2 NRCAM COPS8 OCIAD1 TSPYL4 CDC42SE2 TOMM20 CLMN RGS12 LRP1B CNTNAP5 ZNF703 HHATL VSNL1 PVALB LANCL1 SRP9 MAP1LC3A PSMD12 IGFBP6 CLTC LDB2 C1QL1 LYPD6 ANK1 CLPTM1 ATP5B SNRPN C18ORF32 C18ORF42 MT-ND4L EPS15 SYT11 ATP6V1A PSAP PCDH19 GRIP2 ZNF804A BAI2 CERS6 IDS TMOD2 SYNJ1 CPLX2 RAB3C EIF4A2 ENSA PGAM1 PPP2CA PTPRN UBQLN2 SCN3B QDPR CDR2L GUCY1A3 CLU PLTP PACSIN1 NHP2 PLCB1 PKM KCNAB2 TCEAL2 TGOLN2 RASSF3 LHX6 MAP1A BNIP3 PARM1 COX4I1 COX6A1 UTRN PPARGC1A GRIN1 ACAT2 ARHGAP35 ACTR6 C12ORF49 VSTM2L PRKAR1A DNAJA1 TCEB1 CAMK2N2 ERBB4 FAM96B ANKRD18A RPL13 RND3 EID1 TUBA1A SRP14 NDUFB5 ATP5G2 TCEAL7 SOX6 RGS4 ADAM23 GPCPD1 C12ORF60 NCALD MTCH1 BCKDK USP5 KCNAB1 GDE1 NEFH CADM3 UQCRC2 CAMK2D MAPK8IP2 RAB9A CKB CLDND2 TMEM14A FAM3C ATP6V0C NSF RPL17 RPL17-C18ORF32 RPS10 RP11-20I23.1 DPY19L1 MIF RPL21\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "PVALB-expressing interneuron" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MT-CO3 MT-CO1 MT-CO2 MT-ND4 SYT1 SPARCL1 ATP1B1 MTRNR2L12 MT-ND2 SNAP25 KCNC2 MT-CYB ERBB4 GAD1 MT-ND3 RAB3B PNMA2 MT-ATP6 MT-ND5 MAP1B TSPAN7 MTRNR2L1 PREPL PJA2 APP ARL6IP1 ACTB RTN3 RGS5 RTN4 MT-ND1 YWHAH ITM2B FKBP8 PPM1A RCAN2 NAP1L3 TUBB2A SPOCK2 TSC22D1 SRP14 CAMK2G MTATP6P1 SERINC1 CALM2 POMP MORF4L1 NAP1L2 RNF11 GPM6A ENO2 GOLIM4 PRNP RP11-111M22.2 TIMP2 CALM1 TMEM130 CHL1 MGST3 NUDT21 SPOCK1 PACSIN1 ANXA7 RHOB TPI1 SPTBN1 SLC6A1 GRIN1 RPL15 HSP90AB1 SEZ6L2 AES SNCG VSTM2L TERF2IP STMN1 SERPINI1 DPYSL2 CLSTN1 NDRG4 SOD1 ATP5B ATP1A3 CALM3 RGS4 RPL17-C18ORF32 MTRNR2L6 ZNF385D GDI1 DYNLL1 SKP1 NFE2L1 SLC9A6 TOMM7 HINT1 BSG CTNND2 PITHD1 CAMK2D TUBA1A EIF4A2 KLHL5 TAC1 ATP2A2 GAPDH LHX6 PCDH19 SULT4A1 EIF1AX PEBP1 MYO1B PPP2CA CDC42SE2 SYN1 RAP1GAP2 TRIM37 ACTG1 ATP6V1B2 PLCXD3 CPE SLC38A1 CLTC ATP6V1G1 DYNLL2 NDUFB8 CADM2 POLR2J TMSB4X OLFM1 CTBP1 C19ORF70 TRMT112 SPCS2 C9ORF16 PGK1 ZMAT2 RPS28 ANK1 PPP2R1A MTRNR2L8 MLF2 SCN2B RHBDD2 RAB6B CAMK2N2 HOMER1 SNCB MT-ND4L RPL41 MDH1 JUND TMA7 MAP4 TMSB10 SYT11 CNTNAP3 HHATL GRIN2A PRKAR1B RTN1 GABRA1 HSP90AA1 BTBD11 NXPH1 TBCB RAB3C PRKCE FAIM2 BCL11B GPX4 B3GNT1 EIF1B STMN3 RAB3A YWHAG ELAVL2 TSPYL4 RPS15 GUCY1A3 PPP2R2B PPIA FTL CLIP3 SNX10 PSMD12 HMP19 PGRMC1 MAP1LC3B EPB41L3 LANCL1 BSCL2 IDS GSK3A YWHAZ STX1A SAMM50 TMEM35 SCN1B FIBP LMBRD2 RAB6A CREB5 SIRPA AP2B1 ELAVL4 NPTN VPS35 ATP6V1A KCNV1 GADD45GIP1 DCTN1 NDUFB5 NACC2 ACOT7 EPS15 ATP6AP2 ATP5F1 HRH3 PPP1R7 NGFRAP1 NDRG3 USMG5 PNMAL2 BEX1 RPL8 PPP2CB IPCEF1 PTMA ZBTB20 GRIN3A AK5 OPCML DPP6 CNP NDUFA1 EIF5A2 TBCA CAB39 PPARGC1A DYNLRB1 QKI FXYD6 ABHD14A UQCRB TCEA2 H2AFZ GNAQ OAZ1 PAM CAPZB TENM1 MTCH1 ZNF703 TCEB2 FAM84A VAPB LYPD6 MAGED1 YAF2 HDLBP NDUFB11 CDH13 DYNLT3 NAA38 ALDH5A1 BEX4 CDK5R1 VCAN DUSP1 SEPW1 PRKAR1A SOX6 SCOC TMEM191A NRF1 ATP1A1 TPGS2 MT3 PLD3 CTU2 EID1 ANKRD18A PFN2 HK1 TUBB4A PRKACB CKB KIAA1211 SUMO3 CHN1 FAM127A SLC7A8 CPLX1 WASF1 UBE2N PCDHB4 ARL8A RPH3A SERP2 MAF RPL12 RBX1 BTNL9 SCN3B MARCKS OAT SCD5 TCEAL7 C6ORF1 PPP3CA RRAGA CACNA2D2 NCALD EIF4G2 RPS3A LUZP2 POLR2I STXBP1 KCNK1 DDAH1 RPL13 ZNF536 ELMO1 ANAPC11 ATP5A1 SYT4 TSPYL5 BSN PCSK1N STRAP COX14 COPRS MAP2K4 KRAS CCK SYNJ1 DCLK1 ARPC4 CDK5R2 SLC12A5 VDAC1 LBH CCDC184 PRDX2 APLP1 HMGB1P8 PSMC3 DEXI STMN4 HSPBP1 TRIM47 RND3 COX4I1 AURKAIP1 MZT1 OXR1 SYT13 VAMP1 VSTM2A RAPGEF5 PNMAL1 NME1 SP9 NDFIP1 POSTN ATP5O PHYHIPL SLC6A17 APLP2 THY1 DBNDD1 TUBB4B RPL31 NRCAM GABARAPL2 ARF5 GUK1 PTPRN NDUFA13 COX7C CEND1 CHST11 OLFM2 PFDN4 KLC1 PGM2L1 UBC RPL35 SCN1A GSTO1 LSM4 FGF12 ATP9A SUCLA2 KCNF1 MARCKSL1 FABP5 CFL1 OPA1 PNOC HPRT1 HFM1 PEA15 GRIP2 BCAT1 MORF4L2 ASAP1 MBP TCEAL2 PDP1 KIFAP3 EIF1 CTSD SLIT1 RLIM MAP1A PTPRT TENM3 RTN4R COX7B GPR98 COX6C HS6ST2 CYFIP2 MAPK1 PTPRS PEX5L MFN2 PSAP MRFAP1 OLA1 RNF181 ARF3 PTCHD4 PRELID1 COX6A1 RHOA ATP5J2 ENSA STMN2 MAPK8IP2 NCEH1 SLC7A1 LPPR4 RPL39 ZFAND5 RASSF8 PTPRZ1 DKK3 UCHL1 DNAJC5 TPT1 ATP2B2 SLC39A10 SLC35B1 PPP3CB MTUS1 DNAJA1 ATP6V1G2 NGRN ATP6V0C TUBB3 PSMB3 RP11-20I23.1 RPL3 TUBB ALDOA RPL21 MIF DNAJC21 TBC1D15\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "PVALB-expressing interneuron" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MT-CO3 MT-CO2 MT-ATP6 MT-CO1 MTRNR2L1 RAB3B MT-ND4 MTRNR2L12 SYT1 MT-ND3 ATP1B1 MT-ND1 MTRNR2L6 ERBB4 SNAP25 MAF CLSTN1 EFR3A MT-ND5 CALM1 IDS MTATP6P1 MT-CYB SPARCL1 MTRNR2L8 OR6D1P SUCLA2 NCAM2 PTCHD4 RPL8 OXR1 SCN1A WBSCR17 RTN4 KLHL5 UCHL1 PTMA GRIN2A ARX RPS28 CAMK2G MT-ND2 AKR1E2 HHATL PGAM1 DNAJC21 TF NR1I3 BAI2 HCN1 ATP6V1A GAD1 PLEKHG3 MTCH1 RPS15 CAPZB FAM19A2 SEPT4 PLCB1 UROS CSDE1 RAB6A RUNX2 LRRC39 TMA7 KCNAB2 ZNF536 ACTB ITM2B KCNAB1 TMX4 TSPYL1 SLC6A1 RGS5 CHMP5 CALM2 LYSMD2 PRKAR1A CHN1 MYL6 ATP1A1 SNCB NCEH1 EPB41L3 ELAVL2 SEPW1 HSP90AB1 EIF4A2 SERF2 SCOC PREPL BANF1 THSD7A ATP5A1 RPL13 PARP14 STMN1 LANCL1 SLC39A10 HRH3 PNMA1 DCLK1 SNRPN PLOD2 ARHGAP35 IQSEC1 CYFIP2 NAP1L2 CDC42SE2 GSTT1 EPHA6 KLC1 PKM ATP5I CNTN1 MYO1B ATP6V1G1 HSP90AA1 TPT1 RPL21 VSTM2A GPRC5B NAT8L MAP1A APP PCSK1N AP2M1 PGK1 UQCRB ENO2 C20ORF24 PRNP MPPED1 FAT3 ATP1A2 RPL15 STXBP6 CDS1 NFE2L1 OCIAD1 RGS4 SLC12A5 VAMP2 MAFB STXBP1 BSG ELMO1 ARF1 PRUNE2 SPCS2 NBL1 NTN4 MTPN DMTN PRKCE ENSA TOMM20 PRKACB GPX1 RCAN2 QDPR TENM1 COX7A2L POLR2K GRIP2 CDH7 DPYSL2 PHYHIPL USMG5 NMNAT2 TSPYL4 RAB3IP SEC61G MLLT11 PEBP1 ISCU TMTC1 RAB6B AES DNM3 BEX1 TOMM70A DNAJA1 CEND1 RHEB PID1 SOX6 STMN4 PPP2R4 UBE2V2 SYNGR1 ARL6IP1 RPL7 ATP2B2 GAD2 UTRN ABHD8 GDI1 CYCS RAB3C MZT2B RPL13A C18ORF32 B2M NGRN RPL17-C18ORF32 RPL3 CFH ARF5 MIF CYB5R3 PCDHGA6 SYTL2 DPY30\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "PVALB-expressing interneuron" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MTRNR2L1 SPARCL1 MTRNR2L12 MT-CO1 MAP1B RTN4 STMN2 MT-ND4 MTRNR2L6 SERF2 PEBP1 SLC6A1 BCL11B MRPS7 ITM2B ATP1B1 PSAP KLC1 TSPAN7 SYTL2 ZNF385D RAB3B TBC1D15 RPL13 OPCML GRIN3A PRNP SEZ6 ERBB4 TCEAL7 GHITM ZFAND5 MT-ND1 NACC2 MT-CO2 PRDX5 CCDC85B DNER ATP1A3 SYT1 KLHL5 GRIN1 NDUFB2 RPS27A PACSIN1 EFR3A ZBTB20 COL15A1 SUSD4 RTN3 SLC12A5 RAN MT-ATP6 SCD5 RPL13A MT-ND2 RBX1 HS6ST2 TF CFH IDS HNRNPA1P40 FAIM2 LMBR1 NDUFA1 ENO2 KCNC2 FTL HMGCR AP2B1 RASGRF1 CD59 EID1 DYNLRB1 TERF2IP SNAP25 ANK1 FAM163B MLF2 MT-ND3 PJA2 WBSCR17 SLC25A6 GAPDH TMEM147 ATP5E COL6A1 SYN1 LGI2 AURKAIP1 ATP6V0E2 UQCR10 NDRG3 ARL4C SMIM12 ANXA6 THSD7A EIF1 KCNA2 FBXO2 AP2M1 FGF12 RP11-20I23.1 UQCRH HMP19 GRIN2A TMTC1 PTPRN CRYAB MT3 GUCY1A3 DLX6 ECM1 APP REEP5 MDH1 TOLLIP GNB1 CITED2 NUAK1 SYT11 MAFB DKK3 ACP1 APLP1 PPP1CB TMEM120A SCAMP5 LHX6 PSMC1 ATP6V1F VSTM2A USMG5 MZT2B RAPGEF5 PEA15 NEFL GPR149 KITLG THYN1 ATP1B2 CAP2 CCK NKIRAS1 ATP6AP2 ADAMTS5 CAMK4 PPP2CB ATP6AP1 UQCR11 CAB39 MAP4 SLC38A1 ATP6V0C CALM3 ELMO1 YWHAB FSTL5 NDN NEFH ELAVL2 APBB1 PREPL ERH FIS1 MT-ND5 GABRA1 ENO1 AES PVRL1 PPP2R2B ADD2 THY1 BSN MFN2 CEND1 NDUFS6 NPTN TMA7 NAP1L2 RORB SEPW1 NPPC MTRNR2L8 PCBP1 PTPRM CRH GYG1 ARHGAP29 OLFM1 TPRG1L RPL15 RCAN2 DSTN ZNF536 COL21A1 NGRN NCALD D4S234E COX4I1 GABARAPL1 MTX3 PPM1A DYNLL2 FBXW11 THOC7 PKM SNCB RPL7 RPS12 RPL11 GPM6A RTN1 VDAC2 PPP3R1 TMEM130 OR6D1P CHMP4B HSP90AB1 CNTNAP3 CRIM1 SNRPN GRIP2 CLTC SERINC1 RPS15 TMSB4X ARL6IP1 CTSD PLD3 NUDT4 RPL3 PVALB TUBB3 MAP1LC3B NDUFA13 RPL36A PCDHA9 PCDHA4 PCDHAC1 PCDHA10\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "PVALB-expressing interneuron" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: SYT1 ATP5E SNAP25 ZNF385D RAB3B TSPYL4 KCNA2 RPS15 NDUFB2 ERBB4 RPL23A MT-CO1 COX7C RTN3 RPL41 PHPT1 RPL8 RPL31 RPL13A PRNP ATP1B2 RPS10 ATP1B1 KIFAP3 PLCXD3 VAMP2 FTL RPS28 GABRA1 GRIP2 ATP6AP2 KLC1 NR1I3 HNRNPA1P40 GRIN2A RAB6A PPP2R2B KLHL5 MFSD6 CDC42SE2 RPS26 CEND1 CCK TKT SCN2B ZBTB18 CCDC61 THSD7A RPL26 REPS2 NARS D4S234E UCHL1 NAPA DNAJB6 UBA52 CREB5 MRPS7 BIRC5 OCIAD1 SLC12A5 ATP5G1 MTRNR2L12 ADAM23 TM2D3 SLC9A9 CCDC124 OXCT1 SYT11 ZNF536 ATPAF1 DCLK1 MAP2K4 CKB WASF1 TMA7 PTCHD4 VSTM2A MT-ND3 MT-ATP6 OR6D1P NDUFA13 C12ORF57 CLTC RPS12 ENO2 HOMER1 EIF4G2 RPL38 NAPB TMEM65 RPL21 LRRIQ1 RAB11A RPL3 WLS PRKACB C6ORF1 TPI1 RPL13 SYNGR1 SSBP3 STXBP1 COA4 BEX1 PINK1 NDUFB5 THOC7 SCN7A YWHAH PLCB1 RND3 SERINC1 APLP2 QKI MT-CYB RASGRF2 POLR2I OXR1 RTN4 RPS3A CERS6 CRYGN PI4KA CDS1 PSMA7 LYSMD2 NGFRAP1 TBCB CALM2 TMSB10 TUBD1 HSP90AA1 RPS27A GYG1 ACTG1 CHP1 ADAMTS17 REEP2 CDH22 PTPRM ECM1 PTPRN DCTN1 SCN3B RPS5 DGUOK APP VAPB NFE2L1 C1ORF56 HTRA1 ANXA6 CIAPIN1 EID1 MGST3 OPA1 TUBA1B TOMM7 PEA15 BEX5 PTPRS RNF11 LMO4 SPARCL1 RPL35 RPL17 CD59 MYO16 GUCY1A3 ATP6V0E2 PTMA RABAC1 SCN1A RP11-20I23.1 ATP6V0C PLEKHD1 AC244489.1\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "PVALB-expressing interneuron" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: ZNF385D MT-CO3 MT-CO2 MT-CO1 MTRNR2L1 MT-ND4 ATP1B1 MT-ND2 SLC24A2 KCNC2 RAB3B SYTL2 TSPAN7 SYT1 IDS MAP1B PTCHD4 PGM2L1 ELAVL2 EIF4A2 QKI EPHA6 NXPH1 CALM2 SLC38A1 SNAP25 MTRNR2L6 TF ALCAM RPL31 PPP2R1A SLC6A1 PLCB1 CDK14 FAIM2 CHN1 RPS26 ATP2A2 SCN1A NCAM2 CALM1 C11ORF31 RPL37A CAP2 MT-ATP6 YWHAB GAD1 CAMK2G NEFH EIF1AX CLIP3 ARL6IP1 KLC1 MORF4L1 GAPDH TOMM20 ANKRD18A PGK1 CNTNAP3 GDI1 PNMA2 NDFIP2 NDRG4 MTND1P23 DLD CYCS UQCRC2 SEPW1 COMMD6 SERPINE2 ACTB DNAJB6 LDHB WARS RASGRF1 NDFIP1 HHATL NRIP3 HMP19 C4ORF3 SRP14 CSDE1 EPHB6 CISD1 CERS6 EID1 IQSEC1 FLOT2 GAD2 ABHD14A RGS4 PTPRN2 ARPC4 CCDC154 CLSTN1 COL11A1 CFL2 RELN ATP6V0E2 TMEM132C PAM RASSF3 LMO4 MRPS7 CTNNB1 STMN4 MT-ND3 MZT1 NPTN APP H2AFZ BCHE ABCA8 SCOC MAPK8IP2 SYT11 ATP9A MT-CYB TCEB1 CTNND2 CDS1 SDC4 COX4I1 PPP1CB RPS3A CNR1 ATP5J STXBP6 FXYD6 RPS28 MAP4 NAPB PREPL KIF5A TPT1 GLUL MAPK1 AP2M1 PPP2R4 SEPT4 MRPS21 EIF1 HMGCR PTPRN ADAM23 PSMD2 RHOB ANK1 UHMK1 RPL17P50 PSMC5 RTN1 EPB41L3 GOT1 PPP2CB RTN4 DCTN1 PCDH17 NDUFB4 LYSMD2 HSPA4 SULT4A1 PAQR9 PGRMC1 RBX1 YWHAG ACTR10 GLO1 ATP5G1 HSPB8 CBX1P1 VAMP1 COX7C KIFAP3 STX1B MFN2 HPRT1 FGF12 HIGD1A TAGLN3 SMS SPOCK3 TMEM150C PKM RPL26L1 CLIP2 LGI2 NGFRAP1 LDOC1 PSD3 ATP2B2 PPP3CA KCNA3 RAB3A RPL32 RAPGEF5 VWA5A KRT8P3 PPM1A CDH7 THY1 KLHL5 APEH MT-ND1 NEK7 KIF21A GRIP2 ENO2 CLTC ZNF880 C11ORF96 RAB4A DLC1 BEX2 MT-ND5 MYRIP HS6ST3 RAB6B UCHL1 COL3A1 RPL39 SYNPR OAZ1 ARL2BP RCAN2 COX6B1 HSP90AB1 PHYHIPL TUBA1B LANCL1 PRKCB ERBB4 TMEM230 PGAM1 CDC42SE2 PCDHGA5 NAP1L3 RTN3 DYNLL2 NAA38 BCAT1 KIF3C RAB11FIP5 SCD5 HNRNPA1P40 NDUFA13 RP11-111M22.2 RP11-20I23.1 NGRN ATP6V0C SERF2 CORT TBC1D15\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "PVALB-expressing interneuron" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MT-CO3 MT-ATP6 MT-ND2 MT-CO2 MT-CO1 MTRNR2L1 MT-ND4 SYT1 MTATP6P1 RAB3B SNAP25 GAPDH SPARCL1 MTRNR2L6 CKB MTRNR2L8 ELAVL2 MTRNR2L12 DPYSL2 PTGDS SCAMP5 MT-CYB SCN1A TF NDFIP1 ATP1A1 RPL26 SYT13 NDUFA13 NAPB KCNC2 TMSB10 RPL21 RUNX2 PTPRM RPL8 CYFIP2 SCD APLP2 MGST3 HMP19 ITFG1 TIMP2 SPTBN1 HDDC2 CFL2 ATP1B1 MAF TMEM144 RPS4X EIF1 MLLT11 MT-ND1 ARL4C THY1 MT-ND3 TUBA1B NPTN ASAP1 SSTR2 C14ORF2 SLC12A5 SYTL2 ZNF385D MIR6723 SLC25A4 EIF1AX GABARAPL1 HIGD1A MBP PTMA PSMC1 ZFAND5 TPPP CAMK2D ANK1 PSMD2 COX7B DACH1 APBB1 GDI1 EDIL3 SKP1 CRKL NDUFA8 TAC1 TMA7 SYN1 SCN7A MYRIP TOMM20 EID1 ATP5B SIRPA GRIN2A TMEM164 LANCL1 RPL37A GOT1 PVRL1 PRKACB MAP1B ELAVL4 ATP5F1 OXR1 SEPP1 TGOLN2 CALM1 CEND1 FUNDC1 LGALS1 PKM HCN1 PRPS1 PTPRN COPG1 TUBB2A MT-ND5 INPP5F CNP PRKCB SYT17 RTN1 AHNAK2 SUMO2 WI2-1896O14.1 SERPINI1 ELMO1 MRPS21 RP11-111M22.2 RPL15 RTN3 CDK5R1 PREPL EIF4G2 TMEM155 CALM3 MTG1 APLP1 BIRC5 CNTN1 ADSS ENO2 TMSB4X TMEM179B SERINC1 CHADL ATP9A ANKRD18A SMS CLTC KLHL12 ITM2C CSDE1 SLIT1 AAMDC RELN STMN3 POLR2L IPCEF1 TMEM150C DNAJC21 BEX4 FAM107B TMEM63A RAB4A CDS1 RPL32 MTND1P23 PIP4K2A C1ORF52 PTPRS RTN4 PRR18 FAIM2 NDUFB7 LSM4 CADM2 NRSN2 ARL6IP1 ZCCHC17 BCAT1 PPARGC1A CDH7 NOP10 ATRN HSP90AA1 ATP6V1A CCL27 TRPT1 MYO1B SLC8A2 SEMA3C HS6ST2 SCN2B RAB6B SULF1 COX4I1 PACSIN1 TMEM147 COX8A PJA2 CCDC85B ATP2A2 PLEKHG3 DNER EIF1B RAP1GAP2 CLDND1 RPL38 ADD2 TMEM59L ARHGAP35 PHYHIP MAPKAPK2 MAL CYB5R3 BSCL2 NGRN PCDHAC1 PCDHA4 PCDHA10 PCDHA9 HNRNPA1P40\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "PVALB-expressing interneuron" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: RAB3B RP11-111M22.2 TBC1D15 SYT1 DNAJC21 ATP1B1 SNAP25 NR1I3 ZNF385D ENO2 CALM2 BIRC5 FAIM2 RAB6A DNM3 NARS MAP1B CKB FGF12 DCLK1 NDUFA12 ATP6V0E2 BCAT1 MYO16 SERF2 VSNL1 KLHL5 SYTL2 TUBD1 DYNC1I1 NCALD UHMK1 SYN2 SERINC3 LL0XNC01-16G2.1 SYNGR1 MYRFL TLE4 MGST3 SLC24A2 SLC6A1 CKLF TMOD2 TENM1 ATP1A1 REEP2 APP UQCRB ATP1A3 ELAVL2 TOMM7 SLC1A2 OR6D1P FTH1 GOT2 ANXA7 KCNC2 MT-CO1 NFIA VAPB ARL4C CNTNAP3 CPLX1 IDH3A UQCRH ANXA6 VDAC1 MORF4L1 EIF4A1P8 POLR2M PPP3CB TM2D3 ACTB SCN1B RTN1 CADM2 COX7C SPARCL1 NOS1 PRKCB STMN3 PKM GSTT1 SNRPN OAZ1 RAB3IP IDS RPS26 PRDM1 UROD IQCK ANGPT2 ROBO2 HSP90AB1 SEZ6L2 PPARGC1A SYNJ1 APLP1 PNOC FAM19A2 PSMC5 ALDOC ASCL1 ATP5H TSPAN7 ENSA SYT13 PLAUR RPL3 NDUFA4 ATP2B2 KCNS3 MANBAL SAMM50 SOX6 NEGR1 SCN1A LBH TOMM20 SNAP91 OXR1 CTNNB1 SOD1 ANK1 GRIN1 SNRPE CYCS CACNA2D2 ITFG1 RAP1GAP2 KCNA2 NDUFB11 COX7A2L PSAP TSPYL4 SLIT1 NDUFA11 EPHA6 EPHB1 NEFH PLCXD3 NUAK1 CHN1 BASP1 RPL21 ECM1 UQCRQ VAMP2 TBCB ATP5J BCL6 C12ORF49 KIFAP3 ATP5I MTG1 PFKP VWA5A MCHR2 SLC12A5 SLC39A10 RGS5 BEX1 CALN1 VEGFA IGF1 CALM1 RPL8 ARL1 KIF3C NAP1L5 LINC00086 GSK3A DNAJA1 NDUFS5 GAD2 NRIP3 YWHAB HCN1 PIP4K2A CDH6 SMAP2 LDB2 FABP5 CDH7 GPX4 TMEM65 PCDHGA5 TMX4 PTPRS ETV5 KCNAB2 OAT RNF208 GPRC5B BCAS2 TPT1 TCEA2 PREPL NDUFB8 RPS28 CLPTM1 MORF4L2 ETS2 STX1B TOMM70A PEBP1 PTPRM AURKAIP1 PDCD5 RPL35 OXCT1 TCEB2 NDRG4 SEPT4 SLC9A6 CLMN PRKCE NDUFA8 MAP2K4 TNS1 MED31 SYT2 LCNL1 CA11 C8ORF4 OPCML HINT1 DRAP1 MT-ND4 ATP6V1B2 KCNA1 COL24A1 MTRNR2L1 MAPRE2 ATP6V0B NAPB RLIM DYNLL2 UQCRC2 SPOCK2 CLTB ITPR2 PPP1R9B VDAC3 ATP2A2 SCN2B PCP4L1 MAP1LC3B TPRG1L SULF2 USMG5 CNTNAP5 C14ORF2 RPL15 LYNX1 CALM3 HSPE1 CCDC184 ERBB4 APLP2 ANAPC11 BAG4 NDFIP1 GDI1 PRKACB PTMA CLDND2 SCAMP5 RHBDD2 PPP2R2B LSM4 RTN4 NDUFA13 BEX2 VDAC2 ATP9A TPPP LPPR4 RPL26 LMO4 NDUFA1 ARF3 FABP7 APBB1 TMEM35 UBL4A GNG3 TUBA1B TSC22D1 RASGRF1 TIMP2 PNMA1 TRIB2 LMO2 HOMER1 SLC7A8 ATP5G2 GRIP2 CHP1 MTRNR2L12 GAPDH TRIM37 RAB11FIP5 RPL23A LRP1B RNASEK-C17ORF49 PVALB LINC01296 NSF C11ORF31 MIF CYB5R3\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "PVALB-expressing interneuron" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MT-CO3 MT-CO2 ATP1B1 SNAP25 GAD2 MTRNR2L1 SERINC3 MT-ND4 ACTB SYT1 IDS DNAJC5 PRKACB KLHL5 SPARCL1 GNG5 PKM GPM6A CDK5R1 RAP2A MAP1LC3B RPS28 THY1 GAD1 PRKCE KCNC3 MT-CYB KCNC2 RTN3 OAZ1 SLC12A5 RGS4 NDUFV1 RAB3B MTRNR2L6 ZNF385D DYNLL1 CNTNAP5 KLC1 PI4KA HHATL MT-ATP6 MYL6 TOMM20 FAM219A RPL37A RPL32 NAT8L CORT RPL13A RPL41 GDI1 MTRNR2L12 FAIM2 HMP19 FXYD6 GABARAPL2 SLIT1 DIRAS1 PPP3CB PRDX1 CNP AES PPP2CB COX7C SCD5 ATP2A2 CPLX1 RNF11 ATP6V1B2 KCNAB3 PPIA SNX10 SNCB MT-CO1 PTMA ELAVL2 NRCAM RBX1 KCNA2 NEGR1 RAPGEF5 SLC6A17 RPL17 SSTR2 GAPDH WBP2 PLD3 WSB2 TSC22D1 DLD SUMO3 UQCRH NGFRAP1 ERBB4 MGST3 PPP3CA PLP1 SYTL2 ESCO2 CNTNAP3 C11ORF31 HGF PHLDB2 SMAP2 STMN3 UROS HDLBP TIMP2 MAP2K4 SLC22A17 RPS15 EFR3A HMGB1P8 HMGCS1 FGF12 PSMC3 AKR1C2 TMEM258 SPTBN1 PTPRN ACTR1A MYO16 BSG ATP6AP1 RAB11FIP5 CDC42SE2 GNB1 TSPYL1 SLC40A1 CLTB SPRYD3 ARL1 NRF1 PRDM1 TMEM14A COL25A1 SERPINE2 SCOC PRDM8 BEX1 RPS26 PTPRS MFN2 NDUFB11 STX1B C19ORF53 RASGRF2 IQSEC1 EIF1AX NDUFB7 ALDOC OLFM2 SLC7A8 UBE2QL1 PGK1 AP2B1 SRP9 SEPW1 ATP5O RTN4 ARHGDIG MT-ND1 RLIM COX4I1 ANXA6 VEGFA CYB5R3 BASP1 GOT2 NAP1L3 RPL8 RHEB PSMC5 PNMAL2 CRYAB MT-ND3 RPL21 PRKAR1A GABRA1 CNTN1 RASGRF1 HTRA1 DMTN BAI2 CTGF VSTM2A SYNGR3 SYT11 CREG2 LANCL1 SLC7A5 NR1I3 SPOCK2 RAB3IP ALDH1L1 UBE2D2 PEBP1 PDP1 SLC25A4 PACSIN1 RPS27A RPL35 SPCS2 ACTG1 EPHB6 JUND MMP24-AS1 PCSK1N MLF2 NDRG3 FLOT2 ATP6V1E2 OCIAD1 NACC2 PGM2L1 NDUFA11 RAB3C PSAP PSMB5 ATP2B2 SLC25A6 EIF1 LSM4 YWHAG GNAQ EIF4G2 ZNF536 HMGCR DNER VDAC1 MAP1A SUMO2 APP LMO3 DLX1 EID1 RPL10A BAALC C14ORF2 PTCHD4 FASN CHCHD2 TLN2 ATP9A STMN2 NXPH1 KCNMB4 CRIM1 PAM CALM1 SNN PHF11 ANAPC11 GRM8 NCAM2 NDUFB8 ADSS GRIN2A MPPED1 VAMP2 RAB3A ROBO2 ENOPH1 RTN1 STUB1 KCNAB2 RASGRP1 DNM3 OR6D1P CALM3 SYNGR1 SLC17A7 HINT1 ATP6V1E1 NCEH1 GMFB ELAVL4 SYN2 PPDPF ATP1A3 TPT1 SNAP91 CLTA STK24 NCALD PLCXD2 TSPAN12 PRNP UBA52 GLIPR1 UQCRC1 MYL6B ATP1A1 ACP1 CAP2 STXBP6 SSBP3 VSNL1 VPS35 RHBDD2 CKB NAP1L2 PSMD2 TCEB2 CPNE8 DNAJA1 TMSB10 NDUFA5 CITED2 HSP90AB1 TRPV2 MAPK1 LYNX1 CLSTN1 SCN1B SPOCK3 ENO2 ATP6V0C RPL15 NSF PVALB RP11-20I23.1 ARF5 RPL26 ATP6V1G2 ARFGAP2 HNRNPA1P40\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "PVALB-expressing interneuron" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MT-CO1 MT-CO2 MT-CO3 MT-ND4 ATP1B1 SPARCL1 GAD1 SNAP25 MT-ND3 TMSB4X MT-ATP6 GAPDH MT-ND2 RPS28 MAP1B MT-CYB RTN4 SLC6A1 ERBB4 RTN3 VAMP2 RAB3B SYTL2 RAB6B ATP1A3 SYT1 PREPL EIF1 HSP90AA1 CKB PRNP MTRNR2L12 ATP5A1 HSP90AB1 TBC1D15 SLC24A2 ISCU TSC22D1 ACTB CALM2 NXPH1 ELAVL2 MTATP6P1 RTN1 APP MTRNR2L1 OXR1 KCNA2 GPM6A COX7C APLP2 NDRG4 NDUFA4 CALM3 SUMO2 NDFIP1 PGAM1 CFL2 MAPK1 PPIA GAD2 PRKCE ITFG1 PEBP1 RPL35 SKP1 RPL15 MT-ND4L RNASEK-C17ORF49 ARL6IP1 CALM1 OPCML CYCS D4S234E TCEA2 NDUFAB1 PSAP PINK1 TPI1 NGFRAP1 ARL6IP5 TSPYL1 UQCRB PRKACB STMN2 ATP1A1 TIMP2 RPL21 MT-ND1 ATP2A2 RGS5 ATP5B TENM3 NAP1L3 SCD5 NAP1L5 YWHAG RNF11 UQCRH UBL5 KIF21A PPP2R2B EXTL2 ATP9A MAPRE2 IDS FAM3C EPS15 RP11-111M22.2 DNER NDRG3 SLC39A10 POLR2I CAMK2G SLC7A1 RPS26 SSBP3 TSPAN7 STMN1 MAGED1 AP2M1 ATP6V0E2 NAPB LAMTOR1 LHX6 ATP5G3 UHMK1 THY1 RAPGEF5 SERINC1 ATP6AP2 RPL8 EIF1AX CYFIP2 C9ORF16 POMP NDUFA8 SEPT4 DNAJB6 BTBD11 GRIN2A ATP5G2 PTPRM TUBB4A HMP19 GABRA1 MMP24-AS1 CADM3 ADSS SEPW1 RBX1 DNM3 YWHAB DCLK1 GPX4 TENM1 ATP6V1F SNRPN RAB3C NCEH1 MAP4 MT3 RPL32 VSNL1 TUBA1B NDUFA1 VDAC1 KAL1 PJA2 SPCS2 CNTNAP5 SERF2 EIF4A2 MAP7D1 MDH1 PPARGC1A CLTC GHITM PAM NDUFB7 MORF4L1 PGK1 MT-ND5 PKM COX6C OAZ1 RAN RPL37A KCNC2 GYG1 ATP6V1B2 RPL41 CHCHD2 RP11-20I23.1 ATP6V0C HNRNPA1P40 ZNF385D RASGRF2 LBH MRFAP1 MTCH1 SIRPA ADAM23 FAM134A RAB6A NMNAT2 VAMP1 RPS3A CD59 KIFAP3 C1QL1 RPL36A ACTR10 HINT1 NDUFA12 THOC7 COX6A1 MRPL47 ATP5J2 PPP3CA QKI TERF2IP CSDE1 PPP2CB RPL13 NEFM ATP6V1E1 VEGFA NDUFC2 ZFAND5 UQCRC2 ACTG1 SCN1A COX6B1 ZCCHC24 PPM1A KLC1 GAP43 WDR47 FAIM2 APLP1 GPCPD1 RPL17-C18ORF32 DKK3 YWHAH PTPRN2 FGF12 COPRS ENSA CALN1 EID1 RP11-632C17__A.1 CLTB SUB1 PIK3R1 UQCR10 NEFL UBE2QL1 YWHAZ ENOPH1 SNCG EFR3A KLHL13 FAM163B UQCR11 MRPS21 MPC2 FTH1 SLC32A1 STXBP1 SLC39A3 MTRNR2L6 LANCL1 CFL1 RPL38 SLC38A1 B3GNT1 LDHB KIF5A GOLIM4 GNAQ ANAPC11 CPLX1 BEX4 RGS4 CAP2 TMA7 FKBP1A RLIM FAM149A RFK DNAJC6 VDAC3 ATP6V0B JUND MPPED1 KLHL5 EPHB6 NDUFA5 RHEB CLU OLA1 NRIP3 ATP6V1A CPE PNMAL1 NAP1L2 UCHL1 KLHL12 ATP6AP1 SLC22A17 TUBB2A CTSD TMOD2 ARX NDUFAF3 ENO2 FABP5 ARL4C COX7A2L TXN NCDN PAK1 SLC25A22 KIF1A TOMM20 CDK5R2 BSG ARHGDIA DLX1 NOP10 DNAJC5 MAP1A TMSB10 TMEM59L LRP1B C19ORF53 REEP5 GPX1 RPS5 GDI1 DPP6 KCNA1 TXNDC17 SPOCK2 FXYD6 DNAJB9 RPH3A CTBP1 SCOC DYNLL2 PTPRT RAB11A KIF3C GOT1 PPP1R7 OCIAD1 SPRYD3 RPS15 SUCLA2 MLLT11 PRDX5 WBSCR17 SERPINI1 MLF2 SPOCK3 SDCBP ATP5J COX5B IDH3A VPS35 NSF ARFGAP2 ZNF385A PSMB7 SLC35B1 CRIM1 CDH13 COX5A CAMK2D SLCO4A1 CCND1 SCAMP5 ANAPC13 PTCHD4 ELOVL7 TSPYL5 PSMD12 CBX6 MRPS7 RPL31 MANBAL NEGR1 GSTO1 ARL4D PHB CLIP2 PIN1 CNTNAP3 RPL10A LDB2 NDUFB5 OXCT1 FAM84A BCHE EDF1 TGOLN2 NAT8L CREG2 RPS4X RPL18A SV2B HIGD1A NDUFB10 OPA1 STX1A LMBR1 PNMAL2 BAD NXPH2 VSTM2L OSTN MBOAT7 NRSN2 TMEM130 UBQLN2 TMEM65 ALK SLC25A4 SPRN PLCB1 WBP11 RAB5C PRKCB KCNK1 CYP26A1 CEND1 CHMP4B SULT4A1 NDUFC1 HPRT1 IQSEC1 MYL6B NAPA GUCY1A3 PRDM1 MIEN1 COX4I1 TRIM37 WARS HRH3 UQCRQ HTRA1 PPP2R4 GNG3 LGALS1 IFT52 GTF3A PSMD8 DSTN GNB1 INSIG1 MAP1LC3A PCMT1 PGRMC1 PGD SEC61G ACP1 MDH2 SEZ6L2 MT2A KCNAB1 PTN GABARAPL2 RAD23B TMSB4XP4 CMAS SNRPE TMEM258 WASL MORF4L2 SMIM13 TRAPPC1 FTL STK24 RAB3A SNX3 FXYD7 AES MGST3 SAP18 PNMA2 AK5 SCN7A LYPD6 PPDPF ARF1 GUK1 KCNAB2 COPE NDUFA11 YWHAQ CAPZB ETFB FBXO2 SYN1 ZNF365 C16ORF13 MT1X PCSK1N NIPA1 CFH NDUFA2 TOX3 CABP1 DCTN1 SYT5 NEXN TAGLN3 LMO4 PRKAR1A SSPN PACSIN1 CERS6 TLN2 WIF1 TSC22D4 PTGES3 CTDSP1 QDPR VSTM2A CLSTN1 TMEM230 RND3 ZNF804A TMEM35 RAMP1 YIPF3 MFSD6 DIRAS1 GRIP2 PCDHB4 SCN2B COX7A1 SLC24A3 C9ORF24 EHD3 SOX6 BEX1 GNG11 TOX2 COX8A INA SLC7A8 MAP2K2 NARS DNAJA1 PET100 TPGS2 UROS ATP5I CDC42SE2 PRPS1 GSK3A SEMA5A NDUFB2 SNCB MAP2K4 CNTN1 AP1S2 PDCD5 ITM2C AC011043.1 HMGCS1 TUBB3 RPL13A CMPK1 ITM2B MZT1 BASP1 CXXC4 RPL7 EPHA6 C12ORF49 CDK5R1 PLS3 DPYSL2 FKBP4 SLIT1 TSPO RPS27A RPL23A GLO1 FAM127A HBB CAMK4 ATP6V0D1 SARAF ISG15 RAP1GDS1 ATP5E ATG101 ADCY10P1 PTPRS PRDX2 FARSA SLC25A11 RPL11 LYNX1 SELT SUMO3 SLC6A17 WLS TPT1 UBC TMEM11 NEK7 TSPYL4 ACOT7 ATP5O TUBA1A SMIM12 TUBA4A IDI1 PLD3 TUBB EGR3 MTPN MAFB HS6ST3 RAB27B VDAC2 PDZRN4 EIF4G2 HTR7P1 MARCKS ALDOC BAG4 OAT SLC12A5 NRF1 RPS19BP1 TPRG1L SRP14 ETS2 PHYHIP ATP5F1 NDUFV1 PTPRN RHBDD2 MPP1 STMN3 CACNG3 COX7B APBB1 NPTN ELMO1 C4ORF3 WSB2 CYC1 AP2B1 ALDH5A1 RPS2 CADM2 VAT1L TAC1 NDUFS6 ABHD14A RASGRF1 ARL2BP RPL12 ARF5 SPOCK1 PPP1CB SH3RF1 ATP2B2 NKIRAS1 STX1B FAM71E1 DYNLT3 NEFH GMFB STMN4 GFAP CAMK2N2 STXBP6 CDS1 DNAJC4 RPL39 SUMO1 SLC9A9 IGF1 HAPLN4 SULF2 RPL26 CX3CL1 FAM96B SCD SEZ6L CRHBP UBA52 ZBTB39 MYRIP SYT11 H2AFZ NDUFB4 RP11-195F19.5 PPP2R1A MAPKAPK2 PTMA TCEB2 PSMA7 TM6SF1 RAB1A CCDC85B CHMP5 SLC17A7 C8ORF4 PPA1 HOMER1 C14ORF2 CCDC169 APOLD1 RELL2 RCAN2 GRIK3 IQCK STUB1 RRM2B CKLF SLC9A6 PID1 CLDND1 ALDOA C11ORF31 BSCL2 MIF CORT HBA2 NGRN HBA1 ATP6V1G2 AC244489.1 PCDHA9 PCDHA4 PCDHAC1 PCDHA10\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "PVALB-expressing interneuron" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MT-CO2 MT-CO3 MT-ND4 MT-CO1 SPARCL1 ATP1B1 MT-ND2 MTRNR2L1 SYT1 SNAP25 MT-ATP6 MT-ND3 MTATP6P1 GAD1 MT-ND1 CALM2 MTRNR2L12 PREPL MT-CYB RTN4 RP11-111M22.2 MTRNR2L6 RTN1 CLSTN1 ALDOC CALM1 NPPC HSP90AA1 ATP1A3 SCN1A SLC24A2 ATP2A2 APLP2 SNRPN ZNF385D CFH MAP1B PEBP1 DNER FAM134A CKB SNCB GABRA1 CNTN1 CADM2 COX7C SUMO3 SERINC1 SPOCK2 CALM3 PNMA2 PRKACB TSC22D1 RANBP1 STMN1 PVALB SOX6 NDFIP1 PTPRM SLC6A1 C14ORF2 TUBA1B STXBP1 TAC1 VAMP2 MAP1A ACTB EPDR1 CLU EPHA6 YWHAZ OXR1 MAP2K2 PRNP CHN1 C11ORF31 CAP2 RGS4 TRIM37 ATP6V1B2 LANCL1 KLHL5 TENM3 ALDH5A1 PAM GTF2H2C_2 DYNLL2 OCIAD1 APP GAD2 ZNF804A NCAM2 SCD5 SNCG SYN2 ERBB4 RPH3A PPP2R1A KCNC2 PACSIN1 ELAVL2 LIMK1 ATP2B2 EIF1AX TSPYL4 SOD1 RPL41 UQCR10 TMA7 MT-ND4L NAP1L2 TSPAN7 RAB6A RRAGA PTMA MTRNR2L8 SERPINI1 CNTNAP3 TUBB2A ARF5 SNAP91 COX7A2L TMEM59L ATP5E SLC22A17 VDAC3 VSNL1 MT-ND5 RPL37A PRKCE CFL1 NDUFA13 VSTM2A RASSF8 CYCS ACTR6 OXCT1 SNRNP25 SULT4A1 RTN3 FAIM2 PITHD1 ELAVL4 RAB3C ARHGAP35 UCHL1 YWHAG PCDHGA5 ATP5J2 PINK1 MORF4L2 UQCRH VSTM2L NEGR1 PGAM1 GLUL SLC38A1 NDUFB8 COX7A2 OAT FTL SPOCK1 TBCA VDAC1 SYN1 UHMK1 ARL6IP1 NFIA COX7B RPL36A SP9 TXNDC17 CYFIP2 KIF1A FTH1 MDH1 RPS27A FAM219A NPTN DNAJA1 PRDX3 NCEH1 NXPH1 HCN2 GAPDH STMN2 TSPYL1 RPL13 GRIN1 FAM3C PPP3CA NDUFS5 RHBDD2 GADD45GIP1 RAB3A BSG ATP5F1 ISCU COX6B1 EXTL2 PGD EIF1 MRPS21 ATP5A1 AES GNB1 OR6D1P ARF1 ATP5O CBX6 ATPAF1 ZNF385A NME1 PNKD MAFB PSMC1 SHD PFN2 RAB3IP POSTN GDI1 PPIA PKM FGF12 COX5B DCTN1 RPL17-C18ORF32 TSPAN11 ITM2B RPL35 DNAJC21 RAB3B SYTL2 IDS SERF2 RELN NGRN ATP6V0C RP11-20I23.1 KLC1 D4S234E ITFG1 CA11 ATP6V1E1 C8ORF4 THY1 MTHFS MAP7D2 PPP2R2C NGFRAP1 YAF2 LAMTOR1 MTX3 MTCH1 PRKAR1B PTK2B VAPB SULF1 LINGO1 CTSD C19ORF53 RNF11 SEMA4G PIEZO2 PPP2CB DUSP1 TMEM132C GOLIM4 SOX11 NEK7 COX6C HS6ST2 STUB1 QKI RAB1A PFN1 ATP5C1 ANAPC13 USMG5 IGSF21 UBA52 GPM6A CD63 UBC RPS15 ALK SKP1 ADCY10P1 RPL15 MAP7D1 SARAF TANC1 LAMTOR2 SCN1B DLD TUBB4A CCDC184 MT3 SLC25A5 NDUFB1 AP2M1 PPP2CA SMIM13 RP11-632C17__A.1 HSP90AB1 COA3 VPS35 FBXL16 GUCY1B3 TOLLIP RNF208 POMP TCEAL2 STX1A SCG2 ROBO2 PTGES3 RPS2 KIF3C BTBD11 DNM3 BASP1 PFDN1 C12ORF57 C4ORF3 MYO5B CHMP4B FBXL15 ATP5G2 COPE EID1 DRAP1 CHCHD2 KRAS RPL23A ATRN TPI1 TUBA4A NAP1L3 PDZD11 CLTB DDAH1 LPPR4 SPCS2 CAMK2N2 CDK5 EIF4A2 CEND1 DYNLRB1 NBL1 RPL39 HNRNPH2 MAST3 NDUFB5 CLIP3 MZT2B QDPR RAB2A OLFM1 GNG3 MAP1LC3A CDKN2AIPNL LAMTOR5 CCT5 CPLX2 RHEB TMX4 DYNLL1 EGFL7 ATP6V1A HINT1 CFL2 OLA1 TOMM20 KCNC3 C6ORF1 COX14 FLOT2 CAPZA2 NDUFB3 PGRMC1 REEP2 GSTT1 COX4I1 NDUFC1 PGM2L1 PI4KA TMSB4X PET100 PAFAH1B2 TENM1 ATP5B RAB5C SEPW1 PFKP NAP1L5 DSTN PSMC5 FKBP8 BEX1 SIRPA PCSK1N JAKMIP1 ARL8B NIPA1 MT2A RPL31 THYN1 TSPYL5 CDS1 WBSCR17 CAPNS1 SYNJ1 USP5 NUDT21 PITPNA CMAS EIF1B AP1S2 SCAMP5 TMEM155 COPS8 ATP6V1F CLTC DPP6 PTCHD4 CPE SCN2B ASB13 FSCN1 TCEB2 CPLX1 PIK3R1 PRUNE2 PPP2R2B PCDHB10 NAT8L PRDM1 CAMK2G ZNF703 ARL4C SYT13 PSD3 FABP5 RPL8 ARF3 PPIH CYB5R3 HCN1 RCAN2 CADM3 PELI3 CDK5R1 HS6ST3 UBE2N LMBRD2 GABARAPL1 STXBP6 MPP1 PFDN4 MRPL15 ACOT7 ATP1A1 RBX1 KCNAB1 APLP1 GNAQ RPS5 SOX2 C1ORF233 ACP1 NNAT RAP1GAP2 MMP24-AS1 HMP19 INSIG1 KIFAP3 RAB11A PEG10 PCDH15 LINC00116 PPM1A PHYHIPL GUCY1A3 H2AFZ SUB1 ANK1 C18ORF42 TMEM14A LMBR1 ZNF365 SLC1A2 THSD7A RPS10 INA SLC9A6 SYT17 COPS7A ENO2 PNMAL1 OAZ1 PEA15 CTBP1 KCNAB2 FKBP1A NDUFB4 NDRG4 TRAPPC1 ARHGDIG SYNGR3 TRIB2 ATP6V1C1 NARS NRCAM ARL6IP5 MAP2K4 ZFAND5 ACTR1A IFITM2 STMN4 UBL5 TUBB2B CCND1 MLF2 TERF2IP BCAT1 UBE2QL1 EPHB6 TUBB RPS28 RPL13A AC244489.1 CCDC144NL BSCL2 GABARAP RNASEK-C17ORF49 ATP6V1G2 PCDHAC1 PCDHA10 PCDHA9 PCDHA4\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "PVALB-expressing interneuron" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MT-CO2 MT-CO3 MT-ND4 MT-CO1 ATP1B1 MT-CYB MT-ATP6 SYT1 MAP1B SNAP25 SPARCL1 DNER MTRNR2L12 MT-ND3 MTRNR2L1 MT-ND2 MT-ND1 MTATP6P1 SNRPN FAIM2 NGFRAP1 NDRG4 ARL6IP1 ERBB4 CALM2 CALM3 ENO2 YWHAG SLC12A5 ATP1A3 GABARAPL1 GAD2 ACTG1 NAPB CPLX1 GAPDH GDI1 PRNP GOT1 SLC6A1 TSPYL1 MTRNR2L6 CITED2 LANCL1 CALM1 RTN4 HSP90AB1 SEZ6L2 TSC22D1 ATP5G3 ATP1A1 APLP2 NPTN UQCRB MORF4L1 PRKAR1A NCEH1 MTRNR2L8 HOMER3 VAMP2 PGAM1 SLC7A8 ATP2B2 PRKACB ATP2A2 SLC24A2 GABRA1 INA MAP4 NAP1L3 ZNF385D CLSTN1 TAC1 ATP6V1F TSPAN7 YWHAZ MT-ND5 CYCS GRIN2A DNM3 ATP6V1A KCNAB2 CYFIP2 APLP1 KCNAB1 DCLK1 STMN2 GAD1 ATP5A1 HSP90AA1 SUMO2 APP SPOCK3 CNTN1 ARL8B NAT8L MAPRE2 SERINC1 RTN3 PPP2R1A PVALB NAP1L5 TMEM130 SERINC3 NEFH SEPT4 TENM3 ARL6IP5 SEPW1 BEX1 MT-ND4L PPIA STXBP1 PPP1CB PLS3 DNAJB6 OSTN PTPRM ZNF536 ARHGAP35 CDKN2D HMP19 SULT4A1 VSTM2A PRKCE VSTM2L CEND1 MAGED2 FTH1 NDFIP1 MAP1LC3B MAP7D2 SPOCK1 PREPL RPS28 PARM1 VDAC3 CKB SNAP91 SLC9A6 IQSEC1 PEBP1 TUBA1B PSAP RGS4 STMN1 CHN1 VSNL1 STMN3 CLTA KCNA2 ITM2B ATP5B KIF1A OAT TMA7 YWHAB RAN OAZ1 CTSD TMSB4X CALN1 IDH3A PCMT1 RAB3A SERP2 NMNAT2 BASP1 SCD5 PPIF TOMM20 RP11-111M22.2 SCAMP5 FGF12 CADM2 FKBP1A AP1S2 ELMO1 SLC38A1 SARAF CKLF PPP2CA LBH DEXI ELAVL2 MDH2 TERF2IP COX4I1 FSCN1 NTN4 KCNK1 VAMP1 HRH3 PCSK1N FAM127A RPL32 CFL1 RPL35 OPCML SEZ6L MAPK1 PKM CDH7 TAGLN3 UTRN NIPA1 RRM2B IDS ALDH5A1 MTPN FARSA PFDN4 CCDC184 GNG3 D4S234E CPE TUBB4A TM2D3 PAM KLC2 NPPC ANXA7 EPB41L3 SUB1 VPS35 PEA15 CRKL SYNGR3 COX7A2L MAFB CDS1 FNDC4 CLIP3 RAMP1 ARPC4 CERS6 ETV5 RAB40B BSG BNIP3 PGRMC1 RAB3C SKP1 PCP4L1 RHEB MORF4L2 NFE2L1 PPP3CB NDUFB8 RTN1 PPP3CA KCNC2 NXPH1 AP2M1 SYT13 PITHD1 PSMD12 GNB1 SYT11 CD99L2 RNF11 PNMA2 JUND GPX4 LGI3 SLC39A10 NCDN ARHGDIG APBB1 GRIN1 GPM6A GHITM NGRN ATP6V1G2 RHBDD2 NRCAM TUBA1A PEX5L COPS8 MAGED1 GSKIP NFIA DYNLL2 INCENP UBQLN2 TPPP DYNC1I1 DLD P2RX6P RPL13A NDUFV1 CAPNS1 OLFM1 CCT5 RPL37A ANK1 ETV1 PSMA7 NRIP3 TPI1 ADSS UBE2QL1 AES RP11-345J4.4 NAPA NAA38 TMTC1 STK39 ARL1 INPP5F TCEB1 EFR3A CRYM BANF1 AP1S1 COX8A TMEM59L MAF ARPP19 CRHBP TMEM151A NDUFA2 CDK5R1 ECM1 SYNGR1 PPM1A ADAMTS17 RPS10 DLX1 SPOCK2 FXYD6 NCAM2 LIMK1 RPL15 HAPLN4 HIGD1A TMEM35 MZT1 CLTC NEFL DCTN1 PDCD5 WNT5A UQCRH PLCXD3 RPS2 GPRC5B RAB6B IFI6 ALDOC DUSP1 TUBB3 NDUFB10 RAB2A SRP9 CLSTN2 MSMO1 ATP6V1G1 RPS12 COX6C DKK3 COPRS KLC1 CHMP4B GNAQ COX7B ERH TMEM155 TMEM230 PSD3 SRP14 SH3BGRL3 RPL11 DPP6 ARL4C WSB2 UHMK1 ACTR6 TUBA4A CYP2R1 TSPYL4 TUBB2A SMIM13 NDUFA4 FAM174A SCN1A ARF5 MYO1B RCAN2 CAB39 CBX6 UBC HTR2A VDAC2 SERF2 RELL2 CD63 TRIM37 ELOVL7 PNMA1 TRIM35 PTCHD4 ATP6V0C QKI CDC42SE2 TBCB CLTB SDCBP KIAA1045 HCN1 CAMK2N2 LDHB RASGRF2 PGK1 PIK3R1 RAP2A MGST3 MPPED1 SYT2 NDUFA8 MTCH1 WBSCR17 CLPTM1 TMEM160 CA8 RPS4X EDIL3 OXR1 NEFM MAP1LC3A SELT GABARAP AKAP12 ATP6V1B2 NDUFA5 HINT1 COX5B PNKD FKBP4 ATP6V0D1 RAB1A SOX6 ATP5I CLIP2 ATP5E UCHL1 SLC6A17 OLFM2 INSIG1 DPYSL2 YJEFN3 TCEA2 PRPS1 OXCT1 UQCRQ SNRNP25 GLUL RPL10A FTL RAB7A SNCA CACNA2D2 CORT NREP DNAJB9 NUAK1 ATRN CNTNAP5 TOLLIP MRPS7 CAMK2D FKBP7 PPA1 CAP2 CDK14 AP2B1 FAM19A2 CAMKK2 ACTB MYL6 PPP2R2B PNMAL2 PTMA PPP2CB SSBP3 MPI RFK TIMP3 CAPZB NCOA4 PCP4 DMTN SYN2 CDK5R2 NEGR1 ZFAND5 MRPS21 TCEB2 BTBD11 FAM131B NHP2L1 TM6SF1 MAP1A RPL12 SLC22A17 PSMC1 PRKCB TCEAL7 GRIK3 CNR1 UQCRC1 NDRG3 C11ORF96 UBE2F CDH22 COTL1 AP3S1 NARS BCL11B SOD1 RP11-20I23.1 PAFAH1B2 GSK3A CISD1 EIF1B SLC25A4 NDUFB5 DYNLRB1 C18ORF21 PACSIN1 ACLY PCYT2 SYT3 TRMT112 RPH3A TMEM132C CMAS C19ORF43 SLC32A1 MRFAP1 CLDND1 TPGS2 ZNF385A THY1 HS6ST3 SPRYD3 PFN2 MDH1 ITFG1 ACTR1A SUMO1 SNX10 RPS19BP1 LYNX1 KIAA1211 CSDE1 NDUFC2 PPP3R1 CAMK2G GPX1 TUBB4B PJA2 SOX11 PTPRN2 RPL36A RELN RAB3B NSF SYTL2 GTF2H2C_2 MIF GPR98 RPL21 PCDHGA10 PCDHGA5 PCDHGA6 TBC1D15\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "PVALB-expressing interneuron" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MT-ND4 MTRNR2L12 MT-CO2 MT-CO3 MT-CO1 ZNF385D MT-ATP6 MT-ND3 SNAP25 TBC1D15 SERINC1 RTN3 MTRNR2L1 MTRNR2L8 NAP1L5 PEBP1 MAP1B MT-ND1 PPP2R4 CYCS APP GPM6A KLHL5 PGRMC1 MAP1A GSK3A RAB3C PPP3CA CNTNAP3 PRKCB SYT1 RTN4 KLC1 TUBD1 TF CALM1 NFIA CDH7 SOX6 ARFGAP2 BIRC5 GTF2H2C_2 PLEKHD1 GUCY1A3 NAT8L NPTXR STMN3 STMN1 CHP1 SNAP91 CYP2R1 ZNF804A CLTC CAMK4 EIF4G2 MKX TMSB4X ARPP19 ARX ACP1 PPP1CB NDUFA5 MTND1P23 LMBRD2 PAQR9 LHX6 TMX4 VAMP2 SYN2 SLC25A11 RAB6A CBX6 CLSTN1 SELT ATP5J YWHAH MORF4L1 ACTB BEX4 SLC25A4 PPARGC1A FTH1 ATP1B1 OCIAD1 PSD3 ARL8B SYT3 TPPP RPL39 PKM MYO16 TSPYL4 ALDH5A1 LANCL1 GOLIM4 AP1S2 TAC1 ATP5E CLU APLP2 SPARCL1 AK5 UQCRH SEZ6L2 ERBB4 HCN1 ITFG1 PNKD YAF2 FBXW11 SYT13 TOX2 SPTY2D1-AS1 PPP2R2C PCDHGA6 DYNLL2 CADM2 RAB6B TGOLN2 RGS12 PPP2R2B BAG4 MT2A CTNNB1 ANXA6 SHARPIN MT-ND2 CYC1 CDHR1 NKAIN4 SAMM50 TENM1 RAB3IP CALM2 VPS35 FAIM2 RPS4X MOBP EIF1AX DNER PSMD8 ATP5A1 RP11-111M22.2 TERF2IP C12ORF57 INA PTPRN ARL6IP5 ZFAND5 GUCY1B3 UBE2QL1 MAPRE2 ZNF536 HSP90AA1 CNTN1 BCAP31 MT-ND5 MAST3 UBB TCEB1 MAF OXR1 KCNC2 TUBB2A TTN SSBP3 ATP6V0E2 EPHA6 STX1B RAPGEF5 GRIK1 NDUFA8 UROD MARCKS STMN2 YWHAQ GOT1 SLC24A2 VSNL1 RAB27B SLC1A2 NEFM MZT1 ANXA7 SPOCK3 SERINC3 UQCRC2 OR6D1P MTRNR2L6 RPL17-C18ORF32 RPL17\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "PVALB-expressing interneuron" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: SYT1 SYTL2 ATP1B1 TBC1D15 TSPAN7 SNAP25 HNRNPA1P40 RAB3B HTR1F THSD7A SPARCL1 HSP90AA1 DNER MAP1B CLSTN1 ATP1A1 NDN ARL6IP1 SLC22A17 ATP5E NGFRAP1 CFL1 CNTNAP3 SEPW1 KCNC2 ITM2C HSP90AB1 TMSB4X ECM1 MAF TMA7 RPL36A STXBP1 B3GNT1 ARL6IP5 ARHGAP29 SLC6A1 GPM6A QKI CRH FAIM2 ZNF385D PLEKHD1 BIRC5 NDUFA8 RTN1 TM2D3 ENO2 ITM2B NAPA PKM ATP6AP2 ITFG1 COL15A1 POLR2K FTH1 CSDE1 BSN TENM1 SCD5 GNAQ SULT4A1 ARHGAP35 SLC1A2 BASP1 CRIP2 RPS27A GAP43 VSTM2A KCNA2 SLC39A10 SEPT4 OXR1 HTRA1 CFH CLIP3 PLS3 MT-CO1 RPS26 APP NAT8L C16ORF13 RPL11 LRRIQ1 PARM1 MRPL33 C11ORF31 WBSCR17 CDR2L TMSB4XP4 DPYSL2 DLD SPRYD3 BANF1 USP5 NOV LMO4 COA3 CYCS MT-ND2 RPS12 CEND1 SLC38A1 DYNLL1 MTCH1 RP11-195F19.5 SPOCK2 RPL37A RND3 NDUFA13 ATP5G3 MME SCG2 NACC2 CCK RAB3IP KLHL5 TPI1 COX7C CD59 MSMO1 CALN1 SLIT1 ATP9A ARL4C DLC1 PSMC5 RTN3 SERINC3 QDPR PHB ZNF536 PHPT1 EPB41L3 CAMK2G NDUFB2 ALDH5A1 REEP5 SNCA RP11-20I23.1 ATP1A3 ATP5C1 CFL2 PRKAR1A LAMTOR5 NPPC SERINC1 TUBB2B SYT13 BCAT1 BNIP3 TMTC1 CLU CCDC69 RPL13A ATP1B2 RPL21 ATP6V0C CDKN2D OAZ1 PLEKHH2 ANXA6 TOX2 VSTM2L YWHAZ UBE2QL1 FAM134A YWHAQ COL21A1 FSCN1 NDUFB1 LDOC1L CADM3 NAPB TLR1 VDAC3 COL12A1 JUN LGI2 COL11A1 MANBAL CDK17 OLFM1 ATP5A1 TMEM120A ERBB4 ATP6V0E2 CAMK2N2 REEP2 SRP14 BEX4 APLP2 PSMB3 PRNP TMEM35 MT-ND4 VAMP2 RP11-111M22.2 RPL39 RAB4A RPL41 TKT ASAP1 COX5B HMP19 CALM2 TOMM7 RAB3C PTCHD4 SLC9A9 NAP1L2 C2ORF47 NARS PNMA1 YWHAH RABAC1 CLTB TMSB10 PPP3CA PEBP1 GMPR KLHDC3 CALM1 TMEM158 IDS RNASEK-C17ORF49 NGRN AC244489.1\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "PVALB-expressing interneuron" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: ATP1B1 SPARCL1 ATP1A3 TAC1 SYT1 CHN1 RAB3B MTRNR2L1 EIF4A2 SNAP25 ATP6V1B2 CALM2 ATP6V0E2 MT-CO1 RPL31 TSPYL1 SLC1A2 RPL23A PNMA2 PGAM1 NAPB SLC22A17 CLTA CFL1 RPL11 MT-ATP6 PGK1 CADM3 CAMK2N2 TERF2IP VSNL1 YWHAH TMEM130 SLC9A6 ELAVL4 SERINC1 CAMK2G NPTN KCNC2 SEPW1 RAB3IP SERPINI1 TUBA1B FGF12 UBE2V2 NGFRAP1 CLIP3 PCMT1 MT-ND3 CLSTN1 PGM2L1 BSN RTN1 CX3CL1 GAD2 RPL7 REPS2 TMEM59L C14ORF2 RPL39 CLDND1 RPL32 RPL3 PTPRS NDFIP1 NPTXR RHEB STMN1 TSPYL4 SARAF OXR1 RPL38 SDC2 DNM3 GRINA ARL6IP1 BEX2 ATP2B2 NCEH1 RGS4 KCNAB3 MT-CO2 PPIA MT-ND4 GAD1 CALM3 NECAB1 OAZ1 SCN1A MAF PKM RP11-111M22.2 MT-CO3 MT3 ERBB4 CHGB FAIM2 CDS1 PI4KA COX6A1 KCNAB2 PRNP DCLK1 NDRG4 PCDHA4 NARS CABP1 RPS15 ZNF385D NR1I3 CTBP1 NXPH2 RPL13 LIN7B LMO4 BANF1 PTCHD4 HAPLN4 NUDT4 ASCL1 PET100 SNCB SCN4B YWHAG CKB NDUFA12 PIP5K1B NRGN ENO2 MT-CYB ROBO2 BTBD11 PFDN4 STX1B NPPC ZMAT2 KCNK1 RCAN2 DLL3 ENO1 RASGRF2 MPPED1 SLC6A17 UQCRQ CYFIP2 FTL NDUFA13 UQCRH CADM2 PINK1 OCIAD1 RBX1 NDUFA4 SERTM1 APLP1 CDKN2AIPNL TMEM14A ATP5E SAP18 SERF2 COX6C SYN2 VSTM2A UQCRC1 NDUFB11 KCNA2 RTN3 RPL41 ALDOC KLHL13 C16ORF13 RAB6B WBSCR17 SYNGR1 TRHDE PEBP1 ATP5G1 WBP2 SYNGR3 PRKACB SCG2 ACTR10 TMA7 C4ORF3 NRF1 SLC25A5 MARCKS KIF5A PHPT1 COX7B BIRC5 PPM1A SYN1 PTPRZ1 SPOCK3 MAST3 ATP5I HSP90AB1 GRIN3A WNT16 RPL37A ITM2C TKT MYRFL DNER CA11 RGCC VPS35 PPTC7 SLC6A1 ATP5G2 SYNPR NDUFB10 OLFM1 TCEAL7 ATP6AP2 NOS1 ARX TGOLN2 RPS6 SLC12A5 ANKRD18A GUK1 UBL5 CTNNA3 GSK3A RPL36A GLUL CLTB PNMAL2 SLC7A8 HDLBP EIF1B TIMP2 BCL11B DEXI PLCD1 SLC17A7 TMEM70 DPYSL2 DMTN CD99L2 EIF1 PJA2 MT-ND2 COX7C NDUFA11 YWHAZ ANK1 GTF3A LANCL1 CHMP5 KLHL5 B3GNT1 FBXW11 GABARAPL1 BEX1 ATP5J IDI1 FAM84A STK39 PPARGC1A TOMM34 BCKDHB ALCAM CBX6 UBE2D2 EFR3A GNAQ FKBP7 NAT8L ARL1 TPPP ITFG1 CDK5R2 CPLX1 PLCXD3 PPP2R2B SLIT1 ARL6IP5 EDF1 PCDH19 MTFP1 ATP5F1 SYT4 RPL6 PPP2CB NCDN GABRA1 INPP5F MAP1B SOD1 UBA52 ACTR6 ARL8A SCN7A SSTR2 FAM131B TUBD1 TSC22D1 SLC2A1 TUBA4A UBA1 PLD3 KIF21A DPP6 UBE2QL1 TPT1 COX6B1 TCEA2 CNTN1 CDH13 NDUFV1 MT1X NDUFC1 NUDT21 STRAP FLT3 ATPAF1 ATP1B2 ACTB TENM3 TMEM150C CDK14 MRPL12 ACTG1 SNRPN NDFIP2 SRM KCNA1 UBE2E3 HMP19 PTPRT IQCK DYNLRB1 PRDX2 DLD RPL35 FAM3C CCK TUBB2A PTPN20A NIPA1 NELL2 KLC1 PLCH1 SYT11 ATP2B4 STMN2 INA ERH DYNLL2 EDIL3 RPL13A ARPC5L RPS12 OLA1 VAMP2 MAP4 DDAH1 ABHD14A CFL2 STMN3 REEP5 PCSK9 NDUFC2 ISCU NDUFB5 PPP1CB IDH3A GPX4 SLC25A22 WLS NDUFB7 TMOD2 C8ORF4 PGRMC1 FAM163B POLR2L CEND1 GOT1 RPL17-C18ORF32 SKP1 RPL17 NGRN NSF BSCL2 FTH1 ATP6V0C MTRNR2L6 TUBB3 ARF5 RP11-20I23.1 RNASEK-C17ORF49\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "PVALB-expressing interneuron" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: ZNF385D CFH ERBB4 KCNAB1 BSG KCNAB2 SNAP25 SLC6A1 CALM2 ATP1A3 SPOCK2 ATP1B1 TOMM7 ANK1 RPL38 GPM6A SLC24A2 ARL6IP1 UQCRB RPL8 WBP2 MTRNR2L12 PEBP1 TMEM130 VSTM2A PRKAR1A SRP14 HSP90AA1 RPL37A SYT1 VAMP1 ENO2 FAM3C FGF12 HSP90AB1 ATP5B GNG3 GAD1 SEZ6L2 TMA7 BSN DNAJC21 TBC1D15 RAB3B SYTL2 NUP37 NDUFB3 KCNAB3 NREP CDC37 PGAM1 CYC1 CLTC ATG9B TENM3 YWHAH SARAF ITFG1 CTBP1 NDUFS5 NACC2 CALM1 MEGF11 GAPDH SERP2 PI4KA ACTB STMN1 NAPB LIMK1 RTN1 TPD52 TCEAL2 EIF1AX GRIN1 PSD3 MFN2 BCAT1 GABARAPL1 RUNX2 EIF4A2 MAPK1 BTBD10 DCLK1 EXTL2 ATP5H MT3 FAM127A ARPP19 TMEM230 CCDC25 MAP2K1 CRHBP RPL13 DNAJC4 KCTD12 NXPH1 CCK MAP1LC3B ADAM23 PTPRS ARHGAP35 C1ORF56 PCSK1N MT-ND1 OAT PPP3CA FTH1 ZNF385A S100A10 TM2D3 MAGED2 KCNA2 GRIN2A TOPORS-AS1 TBCA PTCHD4 NEGR1 AES RPS4X UHMK1 ZBTB18 AP2M1 MBP SAMM50 MFSD6 CAPNS1 SLC12A5 FAM19A2 SEC61G APLP2 CLU GPX4 TSPYL1 TMOD2 GDI1 SPCS2 YWHAZ TENM1 CHN1 PPP1CB RPL32 YWHAQ RTN4 SLN TUBA1B VSNL1 PHYHIP RPL21 MTRNR2L1 ENSA EFNB1 CYFIP2 TPRG1L MAP1B SPARCL1 RPL26 NDUFB7 EPHA6 DPYSL2 PITHD1 GOLIM4 SCD5 RAB6C-AS1 ELAVL4 RBX1 RPS3A ATP1A1 CKB DNAJB6 TLE4 PNMA1 MT-ND2 EPB41L3 COX6B1 INPP5F DCN SOD1 GABARAP GRIP2 NDUFA13 REEP5 MAP1LC3A JUND UBE2V2 SH3BGRL3 STMN3 ATP5I RP11-111M22.2 TAC3 RASGRF2 VAMP2 SUB1 WDR47 PCDH19 ROBO2 PNMA2 TPI1 NRGN KIAA1045 AIMP2 TCEB1 SDCBP MT-CO1 FBXW11 UBA52 PFKP ELAVL2 BIRC5 PIP5K1B MT-CO2 VDAC3 PRNP KCNA1 NDFIP1 ACTG1 COX7B COX5B MRPL12 NEFL ANXA6 YWHAG HK1 CFL2 COX6C EFR3A CX3CL1 STXBP6 PTPRT HINT1 C1ORF52 NDUFA2 CSDE1 PRKACB SAP18 MIF MTRNR2L6 RPL13A SSTR2 RPL26L1 ARF5 TUBB ATP6V1G2 MBOAT7\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "PVALB-expressing interneuron" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MT-CO3 MT-CO1 MT-ND4 MTRNR2L1 MT-CO2 MT-ND2 MTRNR2L12 MT-ATP6 SNAP25 MT-CYB MT-ND3 MTRNR2L6 MT-ND1 MT-ND4L MTATP6P1 RPL31 TRHDE ETV1 MTRNR2L8 AP1S2 SCN3B NCOA4 SCN1A RAB3IP RELN CDH6 SLC24A2 HFM1 SLC22A17 DCLK1 BEX2 THOC7 PCDHA4 DCTN1 BTBD10 MRPL55 STMN1 NGEF PNMA2 SLC25A11 CNTNAP3 CHL1 ANK1 KCNC2 ERBB4 DYNLL2 NRCAM LMBRD2 QKI HNRNPA1P40 PPP3CA TMEM59L SLC6A1 GNG2 RPL37A SPOCK1 MTND2P28 HSPA4 IGF1 CDK5R1 RTN4 RASGRF2 ARL6IP1 UQCRQ STK31 CPLX2 GRIN2A RAB27B NGFRAP1 TSPAN7 DNAJB6 ENO2 PLD3 GPM6A OR6D1P PRDX3 FBXW11 SKAP2 OLFM2 CHRM2 PAM RPS15 MAP1B RCAN2 CPE PPP2R2C TMEM35 PFKP TBC1D15 IDS ATP6V0C RPL26 RP11-20I23.1 DNAJC21 ARFGAP2 RPL21\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "PVALB-expressing interneuron" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: SLC6A1 GAD1 ATP1B1 SYTL2 RAB3B APLP2 KCNC2 RP11-111M22.2 SLC24A2 SPARCL1 ARFGAP2 FTH1 CNTN1 ATP1A3 VSTM2L ERBB4 RPL41 RTN4 NDFIP1 MAGED1 CLSTN1 STMN4 RNF11 PLCB1 MAP1B RPL23A PGK1 SYT1 TOX3 TIMP2 SPOCK3 ZNF385D YWHAG CHN1 GDA ALDOC MT-ND1 ATP5G2 PEA15 ATP5J2 NGFRAP1 PHYHIPL HMP19 ARL6IP1 SERINC3 PVRL1 USMG5 SYNJ1 RND3 TUBA1B ENO2 EIF4G2 ATP9A COX4I1 NEGR1 RTN3 HAPLN4 GADD45GIP1 UQCR11 NDUFB10 C1QL1 GHITM ATP6V1A STMN3 YIPF1 PCBP1 SLC22A17 RPL13 BRICD5 MAF SLC12A5 ADD2 RPL21 DYNLL1 SMS GRIN2A CTBP1 VPS35 RAB3IP NDUFA13 TSPYL4 HINT1 IQSEC1 SEZ6L2 TOMM7 BCL11B MDH2 NBL1 SCOC MT-CYB TUBB4B PLD5 RHBDD2 SUMO3 GPM6A TSPYL1 CLDND1 MTRNR2L6 CAPZB NAPB RANBP1 RTN1 SEPT4 CPE NOS2 AP3S1 KCNAB1 CNTNAP3 ARF1 MTRNR2L1 RAB1A NDUFS5 CDC42SE2 ATP5B MRAS RAD23B TOX LPPR4 FAM134A ARL4C RAB6B RPL12 CTNNB1 RPS12 SLC39A3 CLTC PPIA PNMAL2 FAM19A2 HSPE1 SIRPA UQCRH ATP1A1 PIN1 NDUFC1 SERINC1 B3GNT1 ATP2A2 GABRA1 HDLBP SLC7A8 AZIN1 RAB11A IDS GLUL PTPRN2 PPP2R4 RPL13A GPR56 KCNMB4 TMEM130 TPGS2 RAPGEF5 BASP1 HSP90AB1 NCOA4 ATP6V0C GABARAP RP11-20I23.1 HNRNPA1P40 PLEKHD1 PCDHGA6 PCDHGA5 PCDHGA10\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "PVALB-expressing interneuron" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MT-CO1 ATP1B1 MTRNR2L1 MT-CO2 MTRNR2L12 MT-ND4 HOMER1 MT-ATP6 PEBP1 CALM1 GAD1 SYN2 SYT1 ZNF385D RAB3B RP11-111M22.2 OXR1 YWHAB ATP5A1 KLHL5 KLC1 MAP1B MT-CO3 GAD2 RAB6A KCNAB2 CACNA2D2 ENO2 MT-CYB ELAVL4 RPS6 MTRNR2L6 CFH SCN1A VEGFA TCEAL7 TMSB4X ECM1 SPOCK3 UQCRH SULF1 SNX3 OAT COX4I1 SRP9 VSNL1 HK1 ELAVL2 OLA1 TSPYL1 FARSA ITFG1 NCALD DLX6 COL12A1 TAGLN3 NDUFA12 SCN2B DLC1 SPARCL1 MT-ND2 D4S234E SPTY2D1-AS1 VPS35 CHL1 MYO1B BAALC NDFIP1 PSAP PCDHB11 PCDH15 MFSD6 NRSN2 FBXO40 DPP6 DNAJB6 RPL26 PRNP EIF4G2 F3 TPD52 WNT16 TUBA4A MT-ND4L SLC6A1 GPR150 SNRPN GAPDH PGK1 TSPAN7 SPOCK1 PNMA2 RTN4 RPL32 ACTB ARHGAP35 RNF11 NRIP3 RPL11 MED31 RPL39 ARX PIP5K1B LGI2 APP FAIM2 DNER TSPYL4 LAMTOR5 RHBDD2 PRIM1 SARAF RPL13 ERBB4 NUDT21 TMEM132C STMN3 UQCRB SLC12A5 PAM SCAMP5 MT-ND3 SERINC1 HSPA8 ATP6AP2 SKP1 PLCXD2 STMN2 UBB H2AFZ SNAP25 CABP1 PGAM1 CLSTN1 GPATCH4 LPPR4 KIF21A YWHAG LGI3 EFR3A QKI SERPINI1 TMEM130 ESYT1 MAF MDH1 CAB39 TCEAL2 MYL12B PLCB1 C3ORF80 BEX1 HGF COBLL1 DNAJA1 VAV3 CALM3 TUBA1B NPTX1 CDK5R1 SLITRK1 PJA2 MGST3 BANF1 ACP1 FAM127A CLU RPS27A MTATP6P1 IGSF21 ARF5 RPL17 ARFGAP2 PPIA RP11-20I23.1 RPL17-C18ORF32 ATP6V0C NSF\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "PVALB-expressing interneuron" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: ATP1B1 RTN3 SYT1 GAD2 RAB3B SNAP25 NAPB STMN4 FTH1 VAMP2 ARL6IP1 TSPYL5 GAD1 HOMER3 RPS15 NARS KIFAP3 VSTM2A ANK1 GAPDH CDH7 FAIM2 MRFAP1 ASPDH SLC6A17 ARL8B CALM1 MT-ND4L NRIP3 CLEC2L RHBDD2 TAC1 HMP19 PDP1 RRAGA RPL38 MBP HSPB1 SNRPE RHOB DRAP1 CNTNAP3 RPL39 DNER NDUFA4 RPL31 RPL15 CALM3 DPYSL2 EIF4G2 CTBP1 STMN2 CDK5R2 ZFAND4 SPARCL1 RPS28 RPL36A TPPP NAP1L3 PEBP1 RPL35 BEX5 UROD CFL1 VEGFA NTN4 FAM19A2 ADAM23 SUB1 STX1B SLC24A2 FKBP1A RPL26 AP1S2 PSAP HCN1 COX4I1 ATP6V0B RAB6A DLX1 MAP1B GABARAPL1 OR6D1P RNF11 COX8A DNAJC6 NPTXR UQCR10 IQCK CLSTN2 ARL4C C12ORF57 GRIN2A CADM2 DUSP1 SULT4A1 GNAQ ZNF385D TF BIRC5 PVALB IDS RPL41 ALDOA ZNF343 RPL21 NGRN ATP1A1\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "PVALB-expressing interneuron" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: SST RAB3C MT-CO3 GAD2 MT-ND4 SYT1 ITM2B MT-CO1 APP SCN3B GAD1 NELL2 MT-ND2 RPL41 GRIK1 NDUFB1 PEBP1 SNAP25 DCC DKK3 CDH13 GPM6A RTN4 SYNPR COX7C FXYD6 NEGR1 PRKACB FAM96B RHOB NGFRAP1 NREP VDAC3 DLX1 MAGED2 SLC6A1 PCDHB10 UTRN CDK14 MAF TSPYL1 CDS1 D4S234E PRKCB SPOCK1 STX1A ELTD1 SERINC3 SCD5 CXXC4 UBE2D2 UCHL1 TRAPPC1 TMSB10 GDE1 RTN1 YWHAG ALDOC ETFB PPA1 PHPT1 GOT2 RPL38 C6ORF141 ATP5A1 GPR126 NAPB ITM2C YWHAH MAG BIRC5 MT-ND1 LGALS1 SRP9 FAM131B CALM1 SARAF RPS6 NTN4 ARPC4 APLP2 CDC37 HSPE1 ABHD14A ATP5G3 ATRN PFKFB4 COL25A1 WARS RPL18A ARL4C CADM3 CYCS SYTL2 MRPS7 KIF5A NAT8L TM2D3 AP1S1 OXR1 FNDC4 SYN2 RAN PTRF PPIA GTF2H2C_2 SYT11 INSIG1 HSP90AB1 PIK3R1 SLC6A17 PREPL SPOCK2 CLTA NRIP3 EID1 CAMK2N2 KLC1 GDI1 TERF2IP MRPL33 SERINC1 ALK NDN CHADL MAP1B RAD23B GPX1 RPL37A STMN2 RP11-111M22.2 ATP5B EIF1B CLDND2 TMEM65 CRKL DYNLL2 SYT4 TMSB4X FAM163B CHL1 CPLX1 VSTM2A CLIP2 GSK3A RPL35 SNN RPL7 MTUS1 RPL21 MT-ND3 CLSTN1 NPTN UBC NPTX2 PRKCG ATP2B2 MAPRE2 PNMAL1 KRT17 HNRNPA1P40 RP11-20I23.1 ATP6V0C IDS NR1I3 ANKRD18A ATP6V1G2\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "SST-expressing interneuron" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MT-CO1 SST MT-CO3 SNAP25 NGFRAP1 MT-ND3 RPL38 BIRC5 SPARCL1 EIF4A2 ATP5J CLSTN1 MT-ND4 SYT1 HFM1 C11ORF31 PGAM1 RTN4 TMEM130 HNRNPA1P40 MT-CO2 RPL12 RPL13 UQCRC1 TOMM7 VAMP2 SUB1 GAP43 UQCRH DPYSL2 ATP2A2 ACTB PAM SLC12A5 MT-ATP6 ATP5I RPL23A RP11-195F19.5 YWHAH SKAP2 DYNLL1 UQCR10 TMA7 PPP3CB RPL21 ALDOC COX7C ITM2B RPL31 MBP GAD1 SYNPR RAB3B STMN2 KCNK1 GABARAPL1 CBX6 CFL1 ALDH5A1 PLCB1 PSMC5 ATP1A1 TMEM230 CDS1 PEX5L NCDN SLC6A1 EIF1B ARX ANK1 MUM1L1 SKP1 FAM131B ATP6V1A LIMK1 BANF1 STMN1 HPN ZFAND5 SCN1A GABARAPL2 MRPL55 PLAC8L1 B3GNT1 NUAK1 HK1 MTRNR2L1 ARF3 REEP2 GRIN1 RTN3 SLC24A3 CREG2 SERPINI1 PGK1 MT-CYB APP FBXL16 RNASEK-C17ORF49 RPL32 ATP6V0C MPPED1 RAB3IP TCEAL3 GPM6A EFCAB13 SLC38A1 PREPL GDI1 RTN1 BEX2 CDK5R2 PET100 STMN4 FAT3 GPR37L1 CHN1 OLA1 PVRL2 ADSS TXNDC17 TAGLN3 ATP6V1G1 CHRM2 PGRMC1 NAP1L3 NCOA4 NDFIP1 KCNC2 COX8A NDUFA4 PPP3R1 TRIM37 PLD3 LDHB AURKAIP1 CTNND2 FBXO2 GAPDH FTL UCHL1 OCIAD1 SIGIRR VSTM2A CHL1 RP11-20I23.1 PDLIM5 MYEOV2 UBA1 RAN TMEM59L RPS6 BMP3 BAI2 RPS15 TUBA1A MTRNR2L8 RPL13A RPS12 ALCAM NAA38 MT-ND2 ADD2 COMMD6 MORF4L1 ARHGDIG KRT17 SLC24A2 RPL37A MAP1B SPOCK3 PSMC1 PSMB5 ATP5F1 CLTC NDUFB1 PJA2 PFDN1 TMEM88 MTRNR2L12 STXBP1 TOLLIP UROS PFN2 FAM131C RHOB PRKACB TSPAN7 HSP90AB1 COX14 CDC37 ATP1A3 TM2D3 ATP6V1B2 MAGEL2 SNRPN RPL26 MRFAP1 OXR1 YWHAQ NDUFB4 EPB41L3 FGF12 FKBP4 NRIP3 CALM3 MDH1 FKBP1A TBCA GADD45GIP1 UBE2D2 CLDND2 CYFIP2 IDS SERINC1 ELMO1 CERS6 NSF TERF2IP SEPT4 SUMO1 ENO1 AP2S1 SCAMP5 RPL15 OR6D1P EPHB6 FTH1 CORT NR1I3 NUDT21 ALDOA MIF CFH TBC1D15 DNAJC21\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "SST-expressing interneuron" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: ELFN1 ATP1B1 OR6D1P KLHL5 GDI1 SYNPR EPHB6 PJA2 GRIK1 SYT1 RAB3B MTRNR2L1 ATP1A3 CALM3 GPM6A CLSTN1 INPP5F GTF3A EIF1B NDFIP1 KCNC2 APP STMN3 PGRMC1 NPAS3 ITFG1 GAD2 GAP43 TMSB4X KLC1 PDCD5 IDS TBC1D15 RTN1 MRPL33 LDHB SNAP25 RASGRF2 CLTC LIMK1 SEC61G OAZ1 ANAPC11 PPP2R2C GRIN1 ITM2B STRAP PGK1 PRKACB LANCL1 FKBP1B GABRA1 HNRNPH2 WBSCR17 CDHR1 CYFIP2 YWHAZ BNIP3 CPE STXBP1 TNNT1 CALM2 CDR2L PREPL SLC22A17 TPT1 PPA1 NXPH1 ATP1A1 CSDE1 LINC00087 RP11-111M22.2 VAMP2 DLL3 ARL6IP1 PRKCB NDRG4 HINT1 RELL2 MTPN PRDX3 GSK3A RPS10 MORF4L1 TUBA1B TOLLIP MAP1B RPL26 NRIP3 ATP5J INHBB DNAJB6 C2ORF80 ARL6IP5 NPTXR LL0XNC01-16G2.1 RPS28 OPRM1 GRIN3A NCEH1 LYNX1 PRKCG RPL23A CCK DNAJA1 PTPRN ARL4C BSG PEBP1 PPP2CA CALM1 ACTB GABRG1 TRPT1 C14ORF2 ARL2BP ACTR6 ESYT1 ARL8B UBL4A RANBP1 SNRPN SERF2 STMN2 RTN3 ETV5 TUBB2A NEGR1 HAPLN4 PDE1A NREP FAM84A OXR1 CACNA2D2 CYP26A1 GAPDH MANBAL NAP1L5 DPY19L1 RPL7 ABRACL RRS1 TMEM150C MMD CHMP5 ATP6V1E1 ATP6V1B2 TMEM14A RTN4 PAM RPL7P38 RPL41 ERH FXYD6 STX1A GNB1 ANXA6 MAFB UBL5 PPIA VCAN NRGN LRRC59 CCDC154 TMEM132D COL6A4P2 RAB6A MAP1LC3A SSUH2 FAM219A BCAP31 ARPC5L RP11-219A15.1 RELN NGRN CORT RP11-20I23.1 SPCS2 ATP6V0C EEF1A2 MIF TF DNAJC21\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "SST-expressing interneuron" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: SST MT-CO1 MT-CO3 FXYD6 TRHDE SYT1 RAB3B EPHB6 MT-CO2 RTN4 RPL37A PIK3R1 SNAP25 GPATCH4 SLC6A1 MPPED1 SYNPR MT-ND1 ATP5G3 MT-ND4 GPM6A ARL6IP1 TENM1 PRNP PTGES3 CYB5R3 RHBDD2 FARSA APBB1 EFHD2 PDP1 MFN2 WASF1 VSTM2L SCN3B RPL6 RPL23A DPP6 PPA1 RPL17 TUBB2A BEX1 DNER COX7A2 NDUFA1 MAP1B CYFIP2 PNOC SCN1A THY1 MAP1LC3A EIF4A2 NDUFA2 ACTB RELN PTPRS TPT1 ARPP19 TCEAL2 NRGN LAMTOR5 PSMC3 SOX6 CADM2 ARPC5L FAIM2 STMN1 GTF2H2C_2 CAMK2D FIBP NEFL GAD1 LMO4 APP RPL3 PIEZO2 OXR1 STMN3 EGFL7 BEX4 HOMER1 ATP6V1A ITM2C FAM127A CPLX1 RPL15 APLP1 EFR3A TGOLN2 RPL7 RPL38 CRTAC1 SYT13 VGF MTHFS PPIA GRIK3 DRAP1 TXLNB SNCB RPS15 SLC22A17 CX3CL1 DNAJA1 TMEM59L LIMK1 RPL13A PEBP1 GRIK1 PVRL2 UROD RP11-111M22.2 BIRC5 CHST8 GABARAPL2 YWHAG SPRYD3 RBX1 ANGPT2 WLS NRF1 SERF2 RP11-219A15.1 NGRN RPL41 IDS OR6D1P DNAJC21 TBC1D15 AC244489.1\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "SST-expressing interneuron" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: RPL37A GRIK1 TBC1D15 SST UBC SEPT4 GAPDH NDRG4 PRKCE EPHB6 RPL3 SARAF CADM3 STMN1 NDUFB10 CKB RAB3B TF NEGR1 CHGB ELFN1 PARM1 TMX4 REEP5 RPS28 MAPK8IP2 NDUFS5 SLC17A7 TMOD2 PNOC ACOT7 UCHL1 GPM6A PINK1 FAIM2 NDFIP1 OR6D1P ATP6V1F ARL8A TLN2 PPP2R2C VDAC1 ATP6AP1 ETV1 TSPYL1 CYCS SLC19A1 RNASEK-C17ORF49 TPI1 NRGN EIF4A2 GRINA SLC24A2 SERINC3 SYT1 PTGES3 TMEM200C TRIM37 DOCK10 RPL12 LINC01296 RAB2A TUBB2B ATP1B1 MRPL55 PDCD5 PEX5L TMEM120A WBP11 LAMTOR5 CAPZB PGAM1 YWHAG YIPF3 PDE1A MPPED1 RCAN3 HINT1 ARL6IP1 RPL7 COX5B GAD2 KIF21A UQCRFS1 GAD1 TMEM59L NDUFAF2 TSPYL4 CHN1 RPS3A AP2S1 CALM2 SNAP25 WBP2 MAP1A MT-ND1 NUTF2 ITFG1 ATP5I PTPRN2 WDR47 ARFGAP2 RP11-20I23.1 ANKRD18A BSCL2 PSMB3 ATP6V0C NGRN ALDOA RPL41 AC244489.1\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "SST-expressing interneuron" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MT-CO1 ATP1B1 SCG2 GPM6A SNAP25 RPL26 SOX6 MTRNR2L12 RPL35 PPP2R2B ARL4C ATP2A2 CALM2 MT-CO2 CFH SYT1 RPL12 MYO5B RPL8 SST RTN4 APP USMG5 RPL3 ARL6IP5 MT-ND2 MTRNR2L8 OR6D1P UQCRH UCHL1 MT-ATP6 ATP5I CALM1 SYT4 EIF4A2 NAP1L3 BAD PEA15 RPS27A SPARCL1 SCN3B QKI PGM2L1 RTN3 EIF4G2 ZFAND5 TM2D3 COX5A AES SCAMP5 IDS AP2B1 PGAM1 ASAP1 TAC1 ETS1 LL0XNC01-16G2.1 OCIAD1 GPX4 CORT RCAN2 LAMTOR5 DNM3 PEG10 AP2M1 FAT3 COL25A1 SNRPN RAP1GAP2 COX7A2L SAMM50 UBE2V2 RPL37A CCDC25 BTBD11 LDB2 CKB HTR2C C16ORF13 GHITM SLC10A4 BIRC5 BEX4 MT-CO3 ITFG1 UQCRQ VDAC1 RPS26 ATP5A1 FTH1 ATP5J2 MAP7D1 RPL32 CACNB1 PRKCG RPS4X CKS2 RBX1 TAGLN3 HNRNPH2 RRAGA CDH8 HINT1 EID1 RPL39 ACTG1 COL6A1 AZIN1 APBB1 GREM2 MMP24-AS1 OXR1 CLSTN1 AK5 HAPLN4 RPL38 MT-ND3 KCNF1 TMSB4XP4 GAD1 ATP6AP2 ROBO2 LGI3 ERBB4 ARF3 VPS35 NIPA1 IQSEC1 COX5B APLP2 MDH1 HSP90AA1 CHL1 ACTR1A ALDOC MRFAP1 LIG1 TUBB2A TMX4 MAP1LC3A GOT1 CDK5R2 CAMK2D GRIK1 CBLN4 SRP14 PEBP1 GPCPD1 C11ORF31 CAPZB VEGFA RGS4 TPT1 PSAP TALDO1 RP11-111M22.2 ATG9B PPP1R7 RNASE1 NPTX2 RPL41 MT-ND1 TSC22D1 RPL31 CHN1 TSPAN7 ARF1 TSPYL5 ALDH5A1 PIP5K1B EYA4 RND3 CDC42SE2 NCDN ARPP19 ATP6V0E2 RAB11A FAM127A SUB1 CCDC184 NRGN TPI1 CTSD DLL3 INHBB NR1I3 CALB1 RPS5 MYL6 TPRG1L MAGEH1 LBH YWHAG RPL13A NEGR1 NGFRAP1 PRKACB CLTC CDC37 DRAP1 PSMA7 ITM2B PACSIN1 TMEM130 SPOCK1 POLR2K KLHL12 YWHAQ ATP1A1 DPYSL2 TERF2IP MORN2 NDUFAB1 CLU PINK1 TMSB4X FREM2 PDP1 PRNP MORF4L2 CD59 ATP6V1G2 PCDHAC1 PCDHA10 PCDHA4 PCDHA9 TBC1D15 DNAJC21\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "SST-expressing interneuron" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MT-CO1 MT-CO3 MTRNR2L12 MT-ND4 MT-ND1 MT-CO2 MTRNR2L1 MT-ATP6 MT-CYB MT-ND2 MT-ND3 MTATP6P1 MTRNR2L8 MT-ND5 MTRNR2L6 MT-ND4L SYT1 SNAP25 GPM6A MAP1B PPP3CB RPL37A APP PREPL PTMA IDS GRIK1 RPS28 JUND PPP2CB ATP2A2 NRIP3 SLC38A1 RELN ROBO2 LMO4 KLHL5 CALM1 OLFM2 NXPH1 RPL13A SUMO1 SPARCL1 RPL15 GABRA1 MAP1A STX1B CYCS ATP5J SST HSP90AB1 CDK5R1 NGFRAP1 PEG10 TMSB4X CFH CADM2 RPL13 ENC1 SLC22A17 CISD1 NREP RPS27A SLC12A5 PSMB5 DYNLL2 VSNL1 TOMM20 RNF212 DNAJC5 FXYD6 GRIN1 PEBP1 C6ORF1 UQCRH NR2F2 COX7C ARL6IP1 CBX6 NEGR1 SLC1A2 KCTD12 ANK1 PTGES3 RPL17P50 SYT4 MFSD6 CREG2 PDE1A RAB3B SH3GL2 MTND1P23 EFHD2 TM2D3 PRDX3 SPTBN1 CHN1 ENO2 CAPZB PINK1 PPP3CA EIF1B SYNPR GDI1 TMEM130 CCDC25 NDUFB11 ARF3 CCDC85B DNAI1 RAB3A SNRPN PKM ATP1A1 WASL S100A13 ATP2B4 CLMN RTN3 SYT13 ARL6IP5 HMGCS1 TMA7 PCDHGA6 MAL2 RPS19BP1 RPL41 ATP5F1 PRKCE SPCS2 KCNC2 WDR47 PTPRT NFE2L1 MAFB MBOAT7 NDUFS5 TSPAN7 SCAMP5 YWHAZ TMX4 TIMP2 DCN CHMP4B DUSP4 PRKAR1B ISCU PPARGC1A ALCAM ABHD8 SPOCK3 FSCN1 PFN2 FAIM2 SYTL2 SMS CKB ACTG1 SAP18 RND3 CDC42SE2 NECAB1 CAMK4 NAPA TMOD2 FAM19A1 ADAMTS17 PRNP CLTB NDFIP1 CAP2 EPHA6 PSD3 PCSK1N IDH3A REPS2 PHB IQSEC1 ELFN1 OCIAD1 SRP14 GABARAPL2 ITM2B PSMB7 UBA1 PCDHA10 LDHB FAT3 RAB31 SYN2 PJA2 ALDOC C11ORF84 RPS6 ELAVL4 APBB1 HEY1 TUBA1B STUB1 ELAVL2 PARM1 SPHKAP CDK14 PPDPF OPRK1 NAT8L ARL4C DPP6 NDRG4 CMPK1 KCNAB2 PIN1 SNX17 CPLX1 BEX1 NCEH1 SARAF AURKAIP1 CLSTN1 LYSMD2 RNF11 ATP5B STMN1 SLC39A10 ACTB ARHGAP35 BASP1 TBCB CNTN1 SDHAF1 GUK1 TUBB3 GTF2H2C_2 TUBB AC244489.1 TBC1D15\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "SST-expressing interneuron" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MT-CO1 MT-CO3 MT-ATP6 SYT1 MT-ND1 MT-ND4 MT-CO2 MT-CYB MT-ND3 MT-ND2 ZNF385D MTRNR2L12 HSP90AA1 SST MTRNR2L1 PRKACB CADM2 RAB3B ATP1B1 TMA7 TTN CHN1 GAD1 CFH SRM CLSTN1 QKI DNER SCN1A SYT11 KIF21A SNRPN DNAJB9 OXR1 PDE1C PEBP1 GDI1 RPL13A RASGRF2 PLCH1 TM2D3 SPARCL1 PPP2CB KCNA2 RTN1 FXYD6 CADM3 CALM1 YWHAZ MTRNR2L8 APP GABARAPL2 STXBP6 C1ORF52 TENM1 CALM2 CDH7 ATP5B RTN4 BASP1 MT-ND4L ITM2B RPL21 CLU TRHDE NR1I3 CDK14 INPP5F TRAPPC1 PNKP GPM6A LDHB MTATP6P1 YBEY TMSB4X CASP7 WBP11 SUB1 MYL6 CPE DNAJB6 ATP5A1 DMTN NAT8L COX7C UBE2E3 POU3F1 DBNDD1 TSPYL4 RABAC1 RPS27A SKP1 MTRNR2L6 ABHD14A OLFM2 GRINA PGK1 SEPW1 SLC32A1 NRSN2 APLP1 COX7A2L SLC24A2 C19ORF70 SCD5 EIF4A2 CALM3 RPL12 REEP5 SYN1 SNAP25 PREPL COX14 SARAF CDH13 PNMA2 ARL2BP COL12A1 GNB1 COL25A1 TCEAL5 GRIK3 ZFAND5 APBB1 TUBA1B UTRN SLC7A1 SLC9A6 NPTXR RTN3 CAPZB SEZ6L2 GALNT14 SYNGR1 PNMAL1 SELT NRIP3 RNF11 DNM3 KIF1A SERINC1 SYNPR PJA2 ITM2C KCNC2 CLTC ELAVL4 TMEM130 CLTB STMN4 GAD2 PPIF CDK5R1 AES EEF1A2 AP2M1 ENOPH1 DYNLT3 NDUFB7 ENO2 IDS SLC1A2 TERF2IP NDFIP1 HILPDA COL20A1 ZNF365 RPL23A RCAN3 HSP90AB1 DPYSL2 LAP3 MAP2K4 PET100 COX17 DNAJA1 SCAMP5 RRM2B NDN PRDX1 BEX1 YWHAQ PLP1 COX5B NDRG4 CX3CL1 RHBDD2 GABARAPL1 MARCKS TCEB2 NGFRAP1 DUSP1 HK1 RPL37A FLT3 RGS4 NREP RPL3 TMTC4 HMP19 NAP1L3 EFR3A HFM1 GRIN1 UCHL1 PRLR FRMD4B UQCRC2 ADD2 TLE4 PHB NPTN PGRMC1 GRIK1 PPP3R1 GRIP2 TCEB1 PLCB1 TLE6 DLX1 SSPN ATP6V1A NCDN LPPR4 SRD5A1 NDUFA4 SUMO2 NTN4 SLC38A1 PRUNE2 CAMKK2 CNR1 RPL13 UQCRB RELN MT-ND5 MORF4L1 MARCKSL1 RNASEK-C17ORF49 BIRC5 NSF B2M SSTR2 PCDHGA10 PCDHGA5 PCDHGA6 DNAJC21 TBC1D15 SYTL2 TF\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "SST-expressing interneuron" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: SST SYT1 MT-ATP6 TMEM160 MT-ND4 ZNF385D RAB3B CALM1 ARX SNAP25 CFH NXPH1 ITFG1 TMEM35 CDH7 SPTBN1 ITM2C GABPB1 PGAM1 MT-CO2 MTRNR2L12 CHL1 PPP3CA C1QL1 RPL39 TUBB2A MTATP6P1 DCTN1 TOX ATP1B2 EIF1AX CDK5R2 QKI YWHAB ATP1B1 TMEM130 PELI2 COX6B1 PPM1A CPNE2 ZFAND5 SNCA SERPINI1 SYT11 LCNL1 RAB5C DYNLT3 FRMD4B MTRNR2L1 DNER PCDHAC1 TMTC1 GOT1 MAL2 CDC42SE2 COX7A2L NDFIP1 SIRPA MAP4 ADARB2 DYNLRB1 CYFIP2 APP TAF7L AP2M1 TCEB1 SYNPO NDRG4 CSDE1 MT-CO1 TLN2 TRHDE AP2B1 RPL23A SYT4 MLLT11 MT-ND2 NDUFB5 FAIM2 GNAQ SCN1A C14ORF2 TENM1 BCAP31 PGRMC1 THSD7A RPL38 SYT5 DNAJC6 PFKP RPL18A VDAC1 PTCHD4 TOPORS-AS1 BSG TMSB10 HS6ST3 RAB6A APLP2 PKM GRAMD3 DIRAS2 TAGLN3 KIF5A LAMTOR5 PTMA KIF3C TUBA4A SEMA4G SYNPR MAPRE3 YWHAZ PSD3 DLX1 PREPL NPTN GNB1 RPL6 AES SLC39A10 SLC38A1 WDR47 PTPRZ1 RTN1 LDOC1 PRNP IQSEC1 SYN1 CALB1 EPHA6 DYNC1I1 CNTN1 ENSA ATP2A2 MRPS21 PNMAL1 CAP2 DYNLL2 C10ORF10 KCNA2 SYNGR3 BEX4 TMEM200C PRKACB MAP2K4 HSP90AB1 ARL6IP1 KLHL5 RTN3 RP4-635A23.4 SCAMP5 ALDOA NSF MIF CAMK2G TUBB AC244489.1\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "SST-expressing interneuron" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: CALM1 MT-CO3 MT-CO1 ATP1B1 MT-CO2 PPP3CA CALM2 SEPW1 MT-ND2 MAP1B MT-ND3 MT-ND4 MT-ATP6 CCK SNAP25 SCN1A TMSB10 MTRNR2L1 PSD3 RPS4X NDUFA13 C11ORF31 MAP1A PRNP THY1 ARPP19 TSPAN7 RPS28 TUBA1B TMSB4X DDAH1 BASP1 MTATP6P1 MARCKS CPLX2 RNF11 PLCB1 DIRAS2 HSP90AB1 PPP1CB PRKCB POLR2J MORF4L1 NUAK1 YWHAH KCNK1 EIF4A2 FAM134A NOP10 EIF4G2 ABHD14A RPL38 ZFAND5 CLSTN1 RTN3 MT-CYB CHRDL1 MT-ND1 GMFB ATP6AP2 MAP2K1 PGRMC1 YWHAB SNRPN GRIK3 FAM84A CYFIP2 SNN NECAB1 DCTN1 HMGCR GUK1 KCNA1 GPR116 FGF12 TPGS2 MTCH1 SEZ6 BSN ALKBH7 NDST4 OCIAD1 RNF152 HOPX PRKAR1B CLSTN2 SARAF COX6A1 NPTXR RPS27A TSPYL1 AP1S1 POLR2I MT-ND5 CREG2 ATP2A2 ATP9A ROBO2 IDS CAP2 SELT PEBP1 CADPS2 TSC22D1 MAPK1 TENM3 ATP6V0D1 SYT1 PACSIN1 PDP1 AK5 PAK1 CD24 SPARCL1 LGI3 FAIM2 DNAJC6 KLC2 PARM1 TERF2IP RPL11 RAB2A EPS15 DDN SYNGR1 NXPH1 DKK3 CPNE8 SST NDUFAB1 CAMKK2 OPA1 HEY1 ANAPC13 EIF1AX ARL6IP1 TMA7 LAMP5 GHITM LZTS1 ENC1 SPRYD3 RHOA NRGN RASGRF2 BEX2 SCN3B RHOB ARL6IP5 CDC42SE2 C19ORF10 ATP6V1A DEXI MAP7D1 DYNLL1 FAM96B MFN2 SUB1 TMEM230 HSP90AA1 SUMO2 ATP6V1G2 WSB2 PPP2R1A VSNL1 TRIM37 CTSD KLHDC3 PRKACB ETFB SLC39A10 RAB11FIP5 ENOPH1 MAP2K4 TCEB1 NRN1 TGOLN2 MIF AP3S1 RPL36A SERF2 MTRNR2L6 NUDT4 RP11-219A15.1 PCDHA4 PCDHA9 PCDHAC1 PCDHA10\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "SST-expressing interneuron" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: SYTL2 PDCD5 THY1 RPL31 TMSB4X DNM3 SYT1 KLHL5 RPS27A ACTB RPL7 RPL26 MAP1LC3A HSP90AA1 RPL32 PTPRN ARF5 RPL38 RPL41 GAPDH RPL6 RTN3 EIF1 DKK3 SST GRIK3 SPARCL1 USP5 KCNMB4 ENO2 VGF MRPL37 SLC7A8 COL25A1 BTBD10 MTCH1 RPL37A RHBDD2 WLS EHD3 TAC1 KCNF1 FNDC4 POLR2L RPL17 SNRPN CCND1 RAB11FIP5 SYT11 AP2S1 MAP1B SPOCK2 PPP2R2C NDRG3 YAF2 COX6B1 ALCAM RAB11A CLU FKBP1B ACTR6 CHGB SNCB ARPC4 ATP2B4 FBXO2 PEX5L COPRS FAM219A NDUFA13 COTL1 ITM2B CAMK2G IGF1 PNMAL1 CHN1 RPL10A RGS12 NAPB CALM3 RPS15 RAB6B IQSEC1 RPL39 APLP1 FTL UBC SNAP25 ATP5E RP11-51O6.1 TBCA ATP5B ATP5F1 RPS4X PCMT1 NDUFA4 ARL8A PRNP NUPR1L PEBP1 NAT8L RGS5 TRMT112 IDS ATP2A2 FRMD4B PPIA TMTC4 LPPR4 MDH1 SPP1 PLAUR KCNAB3 CALM1 TMOD2 RASGRF1 USMG5 ATP5A1 ATP6V0E2 PNKD EPHA6 GPM6A C16ORF13 RPS19BP1 SLC25A5 CLDND1 TMEM130 ATP5J2 TMEM150C ARFGAP2 EID1 CAMKK2 MT3 NDFIP1 CD59 DYNLT3 PGAM1 HPCA YWHAH RPL23A BSN GDI1 TSPYL4 VDAC2 CAPZB SARAF PSMD8 FLOT2 CACNA2D2 KLC1 ATP1A3 PIN1 RPL36A RP11-570P14.1 SERP2 RAP1GAP2 CTD-2020K17.4 GOT1 BAD WASF1 CNTNAP3 ACTG1 UQCRB FXYD6 SYN2 COX6A1 LINGO1 TMEM200C PCSK1N EFHD2 FGF12 CHCHD2 PRELID1 FAM71E1 MMP24-AS1 DNAJB6 TMEM59L FLT3 SNRPE SOX6 UBB DNAJA1 BEX2 ANKRD20A11P NDUFB2 UBE2M OAT OAZ1 FKBP8 CDH24 STXBP1 CX3CL1 GRIK1 RPL13A MRPS28 CORT NSF CFH TUBB3 BSCL2 OR6D1P PCDHGA6 PCDHGA5 PCDHGA10 RAB3B\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "SST-expressing interneuron" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: SYT1 TMSB4X MT-CO3 SLC6A1 MT-CO2 SNAP25 MT-CO1 PRNP ENO2 MAP1B CCK PTCHD4 PRKACB MT-ND4 KIT ZNF385A PCDHGA5 NDFIP1 RPL31 ATP1A1 CALM2 SPTBN1 PKM MT-CYB PRDX5 GRIN1 SCN1A MAP1LC3B ATP1B1 FXYD6 CEND1 ARL4C MT-ND2 FTH1 CALM1 RPL41 PJA2 NRCAM PRDX2 STX1B GABARAPL1 ATP5F1 PPDPF PSAP GLUL RPL11 SYN2 NECAB1 ID2 EDF1 RPL15 PTMA YWHAH APP FKBP4 CDKN2D BCL11B RPL38 RTN3 RPL17-C18ORF32 GAD2 MAPK8IP2 NPTXR CD99L2 NAPB FAIM2 VDAC3 TPT1 CHGB SERINC1 PNMA2 MAP2K4 BASP1 GAPDH PTPRS CALM3 VSNL1 MAF NAP1L3 HSPA8 OCIAD1 SLC22A17 FBXL16 YWHAB VAMP2 MAFB LANCL1 PPIA DNAJC21 TBC1D15 MAGED2 TUBD1 RELL2 ATP6V0B PINK1 CST3 MYO16 KIF5A GYG1 RPL3 KIF21A CFL1 NOP10 ARL6IP5 SPARCL1 RCAN2 NDUFAF2 ALDOC BEX2 TUBA4A MAL2 EIF4A2 PEX5L MTATP6P1 RAB1A DCTN3 ARHGAP35 LPPR4 SELT TEX15 PLAC9 KCNC2 ZCCHC12 TENM1 TMEM59L TMEM255A B3GNT1 WDR47 MIR6723 COX17 PPP1CB SSTR2 RPS19BP1 RSL24D1 LDHB TMEM158 SRP14 JAKMIP1 ITM2B SLC25A22 NHP2L1 ENSA RPL13A GOT1 STMN1 EIF4G2 YAF2 MORF4L2 PEA15 TUBA1B ARHGAP29 ARL6IP1 NRF1 COX5A SCOC DPYSL2 YWHAZ C1D KCNH5 ATP6V1A RPS28 PGK1 AP2M1 TUBB2A TMEM130 ARF1 FXYD7 GNAQ DNAJC5 RTN1 TSPYL1 CLIP3 NDUFA8 SNCB NDUFA1 PLD3 CALN1 TPI1 INSIG1 MT-ND3 MORF4L1 BCAT1 GABARAPL2 C1QL1 PACSIN1 SEZ6L2 IDS NFIA MRPL55 DKK3 RRAGA COX7A1 EPB41L3 NFE2L1 OAZ1 KLC1 SCAMP5 TMSB10 SLC38A1 NUAK1 ACTG1 NDFIP2 TRMT112 TSC22D1 RPL32 PEBP1 PCSK1N MT-ATP6 CAMK2D KCNAB1 SCD5 PTPRT ZNF536 RPL39 RPS3A BAG4 NGFRAP1 TOLLIP SLIT1 LMBRD2 PPP2CB NAT8L UQCRB TOMM20 RAP1GDS1 MAP1A OPA1 NEFL VAMP1 NDRG4 PAK1 RAB3IP ADD2 UCHL1 NMNAT2 SFRP1 DYNLL1 FOXO1 CXXC4 TOX3 UBB TEX2 AES COX6A1 UQCR10 ATP2A2 SEPW1 SEMA4G MSMO1 PMEPA1 EFCAB10 TMEM141 MTRNR2L8 DEXI RBX1 THOC7 DNM3 ZMAT2 NDUFS5 GAD1 ATP6V1G1 SKP1 ATP1B2 PCMT1 RPL37A DCAF12L2 OSMR CPLX1 CAP2 REPS2 FTL ATP5G1 GAP43 NRIP3 ATP5E SUMO1 NOS1 SUB1 NAP1L5 DNAJC6 CDH13 UQCRQ HCN2 ZFAND5 HSP90AB1 WSB2 RPL13 PTPRM RTN4 POMP DYNC1I1 PDGFD GRINA TMEM164 HAPLN1 KIF1A MAP7D2 ATP1A3 TIMP2 GRIN2A BCAP31 BEX5 COX6B1 CTBP1 HMGCS1 HSP90AA1 NPTX1 MTRNR2L12 RAB3B ZNF385D SYTL2 ALDOA PSMB3 RPL21 SERF2 CFH RP11-20I23.1 ATP6V0C ARF5 RNASEK-C17ORF49 TUBB3 TUBB PCDHA4 PCDHAC1 PCDHA9 PCDHA10 GTF2H2C_2\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "SST-expressing interneuron" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: SYT1 BIRC5 RTN3 RAB3B GABRG1 RPL35 SNAP25 HNRNPA1P40 ZNF385D SST CLSTN1 PTCHD4 RPL41 CHN1 HSP90AB1 RPL21 SYT11 RTN1 INPP5F CDH13 PPP2R2B STMN2 RPL37A WFS1 KIF5A CDK5 CDK14 UCHL1 PRKCG GRIN3A SLIT1 SRD5A1 TSPAN7 IQSEC1 APLP2 THY1 SERINC1 TOMM7 SNX10 SYNGR1 NPAS3 TRHDE BRK1 RPS15 NDUFC2 COX5B RPL10A GTF2H2C_2 NR1I3 KLHL5 KCNMB4 ATP6V0E2 MT-ND4 MFSD6 GPM6A ATP5G3 ATP6V0D1 SYT4 DNER STMN4 LL0XNC01-16G2.1 PGD RAB7A NECAB1 C14ORF2 TSPYL4 DNAJB6 HMGCR ISOC1 ATP6V1F DCLK1 TGOLN2 PNKD CACNA2D2 APP NDUFC1 RABAC1 GDA QKI CCK RPL13A TMEM141 SKP1 ZFAND5 CKB PCP4 PPP3CA UQCRC2 ELAVL2 ARL8A PLCH1 FLOT2 BEX5 MT-CYB UTRN SPOCK1 DIRAS2 DIRAS1 TERF2IP SERPINE2 CARNS1 PEA15 PPP2R2C TIMP2 ARL6IP1 TRIM36 RAB3IP PRDX1 ATRN NDUFAF3 CA4 SNRPN KLC1 MRPL55 FAM84A REEP5 ATP5O DNM3 CLU ATP5G2 THOC7 SLC25A4 USMG5 PGK1 FTL CDH8 PPP2R1A TEX2 CSDE1 SLC1A3 ENC1 PNMAL1 CDC42SE2 MT-CO1 SEMA4G TMEM59L FXYD6 RPL13 PCSK1N MZT2B C1ORF115 PPP2CB OXR1 CHRM2 ARF3 ATP1A1 EPHB6 PCDHA4 VWC2L UQCRB C3ORF80 MYL6 ATP1B1 EIF4A2 RPS28 RPL32 MAPK8IP2 SPOCK3 CADM2 RHBDD2 HSP90AA1 RP11-111M22.2 KLHL12 MT-CO3 RTN4 MAP1LC3A NPTN PLCB1 RNF11 C6ORF1 GFRA2 MARCKSL1 PMEPA1 KCNC2 TTN GAP43 RAB11A RPL11 RGS12 ITM2C WBSCR17 GAD2 GDI1 LRRC39 NRGN SEPW1 NPTXR SPARCL1 BEX2 CAPZA2 RPL23A ALDOC SLC24A2 CCDC74A APLP1 FAM131B HDDC2 C18ORF32 RPL3 RP11-20I23.1 NGRN RPL17-C18ORF32 ATP6V0C RPL6 B2M RNASEK-C17ORF49 MIF\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "SST-expressing interneuron" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: SPARCL1 TSPAN7 CLU CHN1 GRIK1 SYTL2 RAB3B RPL6 NDUFB1 KLHL5 FAIM2 TOMM7 SYT1 RPL35 UQCRB RPL17 RPL31 KCNC2 RPL36A UROD PLCB1 RPL32 ITM2B SST TUBA1B SYT17 HNRNPA1P40 ARFGAP2 NPTN NPTX1 ARHGDIA RAB6B OST4 SNCG RPL23A PRNP PRDX2 RPL37A CCDC25 MT-ND4 CBX6 APP VSTM2L MAPK8IP2 ENO2 NPTXR RPL8 NRSN2 MYL6 NBL1 NRCAM PKM TMSB4X CDK5R1 NRGN RAB34 RPS2 THSD7A CYFIP2 DPP6 PNMA2 PPAPDC1A MTCH1 KIF3C ISG15 SNAP25 PSMB5 NDUFA13 VSNL1 PPP3CA EPHB6 GAD1 DDN OCIAD1 RAB3IP RPS28 STX1A NAT8L GPM6A COX6B1 TCEB1 RPS27A PDE1C TPPP CLTC PREPL UROS COX8A CCT5 MRPL55 WASF1 CSDE1 COX6C REEP5 ROBO2 CDH8 MAP2K1 RHBDD2 EPS15 RTN3 NRIP3 PCDH15 RPL13A SPOCK1 NDRG4 NDUFB2 GRIN1 CRTAC1 THY1 DNM3 LANCL1 RPS3A RPS6 ENSA GOT2 MAFB RP11-111M22.2 COL6A1 RP11-20I23.1 PSAP ADD2 PEBP1 GRIP2 ELAVL2 ATP6V0C CDS1 RAB1A TUBD1\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "SST-expressing interneuron" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MT-CO3 MT-CO1 ZNF385D MT-CO2 MTRNR2L12 MT-ND4 MT-ND1 SNAP25 MT-CYB SST PEBP1 ATP1B1 RAB3C TSPYL1 RAB3B CAMK2G TSPAN7 TCEA2 STMN1 GRIN1 MAP1B C1ORF52 CADM2 PRKACB NDFIP1 NTN4 CDK14 SLC24A2 SCN1A MT-ND3 GAD2 TBC1D15 TF CSDE1 MARCKSL1 COPRS CLSTN1 CORT RPS27A NR1I3 ATP6V1B2 EPB41L3 EIF4A2 UCHL1 BEX2 RPL35 GAP43 CLU CDH8 TMSB4X AP2S1 TCEAL3 KLHL5 SYT1 DPY19L1 TMX4 GHITM GAD1 PRKCB MAP1LC3B PPTC7 CKB COX7A2L NAT8L PLSCR1 EIF1AX RPL15 SCAMP5 SELT KIAA1024 EFR3A PTPRZ1 MTATP6P1 MTG1 RPL7 FAM89A STRAP ELFN1 STMN4 TERF2IP LGI3 TTN NEGR1 SMAP2 YWHAH YJEFN3 VAMP2 RANBP1 PRNP ARL6IP5 CLDND1 MAP2K1 CLTA TOMM20 CNTNAP5 COA3 SUB1 PRKAR1B CAMK2D FABP5 NDUFA4L2 NCBP2-AS2 LANCL1 ATP9A UQCRH PIEZO2 KLC1 ZBTB20 GTF2H2C_2 KCNAB3 DCLK1 APP NDUFA4 TRHDE MTRNR2L1 RASGEF1B MAPRE3 RCAN2 SALL2 EIF1 CALM1 SLC9A9 RLIM CALM3 VSTM2L NDUFA11 DNAJA1 VGF MT-ATP6 NDUFB4 TBCA AES TMEM59L PTPRN ACTG1 APLP2 NREP GRIK3 SLC6A1 RTN4 CDK5R2 CALM2 MAP7D2 RPS15 REEP5 C6ORF1 MTRNR2L8 PSMD12 MAP1A TCEAL7 EID1 OLFM2 PREPL D4S234E S100A10 MT-ND2 OXR1 HMGCR MT-ND5 RPL13 SERINC1 CD99L2 HGF TMEM65 MARCKS PNMA2 TOMM7 ATP6V1A RP11-219A15.1 IDS MTRNR2L6 NGRN DNAJC21\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "SST-expressing interneuron" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MT-CO3 COX7C TMSB4X RPS15 MT-CO1 SNAP25 RPS27A GAD1 NDRG4 ARL4C IQSEC1 CSDE1 ATP6V0C RP11-20I23.1 MORF4L1 RPL13A EIF4A2 CALM3 BEX2 MT-CYB FTH1 GRIN2A SCAMP5 CALM2 ATP6V0B RPL41 RPL37A NAP1L2 TUBA1A SOX11 SERINC1 RPL6 APP HMGCS1 SYN2 USMG5 DPYSL2 SNRPN PPIA PRKACB MTRNR2L12 RPL31 ATP2A2 TMA7 RTN3 ATP5O PPP1R7 MYL12B BCL11B PPDPF MAF SPCS2 ATP1B1 PRDX5 GRIK1 COX4I1 HTR2C PSMB5 PLD3 THY1 CHL1 TOMM20 EID1 NAP1L3 OLFM2 ACTG1 NXPH2 CYFIP2 NDUFA12 ATP6V1C1 GDI1 TERF2IP APLP1 POLR2L COX6A1 ARL6IP5 RHOA SYT17 STMN4 MAPK1 NDUFS6 MT-CO2 LANCL1 NDUFA4 NDUFB10 GPR171 SERF2 RAB6B FAM84A TOMM7 CLTA EDF1 THSD7A CLU EFNB1 SLC12A5 CKB NDFIP2 PITHD1 ERBB4 OR6D1P PET100 PTMA PGM2L1 JUN NGFRAP1 RNASEK-C17ORF49 MT-ND4 COPS7A RPL23A B3GNT1 SPARCL1 MT-ND1 PPA1 TLN2 TUBB4A CHN1 TUBB2B ARHGAP35 ATP5E RPS6 RPL21 DGKG GNAQ RPL10A GNG3 JUND TUBB2A C1ORF52 CLTC TCEB1 BSCL2 FAM174A PRDX1 PPP3CA HDLBP ATP6V0E2 SKP1 CCDC184 CHCHD2 ZFAND5 GPR158 MT-ATP6 SERPINF1 SYT1 OAZ1 PNMA2 YWHAG ATP1A1 MGST3 MT-ND2 NDUFA2 HSP90AA1 PRNP PIK3R1 SCN3B SLC25A6 ATP6V1A COX8A CNTROB RP11-111M22.2 ROBO2 CNR1 NOP10 MRFAP1 POLR2J PREPL GPM6A SERINC3 SST GPX4 BASP1 MTATP6P1 PTPRT NDUFB1 ZBTB20 TAF7L CLIP3 INPP5F UBA1 TMSB10 PPP2R2B TMEM130 MAPRE3 CMAHP MAP4 SYTL2 RAB3B ZNF385D ESCO2 DNAJC21 TBC1D15 RPS28 C20ORF24 MTRNR2L6 IDS MIF\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "SST-expressing interneuron" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: SST SYTL2 ELAVL2 NDUFA13 RGS4 RPL37A PCDH19 CLSTN1 GDI1 PRKACB CALM2 SNAP25 TSPAN7 ENO2 NHP2L1 RPL15 NPTXR OXR1 CEND1 APP SYNPR PSAP ETV5 VAMP2 FAIM2 PAK1 CREG2 CDK17 TMSB4X TPI1 LL0XNC01-16G2.1 TOMM7 NDUFA4 SNRPN RTN3 KLC1 GPM6A EGFL7 THY1 PAM PTPRM TMEM59L CSRP1 COX6B1 RPL26L1 RPS6 GYG1 TANC1 STXBP1 COL6A1 CALM1 FGF12 NAP1L2 ATP2A2 NAPA NDRG4 ISCA1 SCN1A PPP2CB RAB6A TMA7 SPARCL1 MLLT11 ATP1A3 DLX1 SHD SIRPA MT-ATP6 C19ORF70 SNAP91 ATP6V0E2 NDFIP1 RABAC1 NEGR1 RPL7 FAM219A STMN4 SLC39A10 SEPW1 PTGDS TPRG1L MRPS21 CD99L2 PTPRN HSP90AB1 PSMC3 DYNLT3 ASPDH RPS10 GAD2 DNAJA1 PCSK5 KLHL5 MTATP6P1 HSPB8 KCNIP1 VDAC1 PEG10 RP11-111M22.2 CFH TUBB3 SERPINF1 IDS FTH1 GPR98 RPL17 RPL17-C18ORF32 PLEKHD1 HNRNPA1P40 ARFGAP2 RAB3B\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "SST-expressing interneuron" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MT-CO3 MT-ND4 GAPDH TMSB4X SNAP25 SST MT-CO1 MT-ATP6 GPM6A PRNP OXR1 SERINC1 SYNPR TUBA1B ATP2A2 ATP1B1 PRKACB RAB3B MAPRE2 NDRG4 MT-CO2 NAP1L3 ACTB RTN3 CLU KIF21A CLSTN1 PJA2 EIF4A2 MT-ND3 ENO2 MTRNR2L1 NAPB PPP2CB GRIK1 RTN4 CADM2 CD24 MAP1B VAMP2 TSPAN7 CNTN1 VGF ARL4C GAD1 CLTC CLIP3 TRHDE PCDH17 SLC38A1 CHN1 SYN1 TH FXYD6 NUDT21 YWHAG APLP2 SLC24A2 SPP1 SARAF PRKAR1B ARL6IP1 GABRG1 PTPRN MT-ND2 FAIM2 CORT ACTG1 RTN1 MLLT11 RPL15 CALM3 TUBA1A MARCKS APP PEG10 CFL1 MT-CYB RPL41 ZNF385D KRAS NGFRAP1 CNR1 IDS TENM1 ZCCHC12 APLP1 UCHL1 RHEB RPS28 WASF1 ELAVL2 TIMP2 VPS35 PPM1A PTPRT RPL13 ATP6V1B2 KLC1 RPL21 MTATP6P1 VDAC1 ARL8A TMEM59L DCTN3 PNMA2 H2AFZ PPP2R1A SNCA CHL1 SYT1 GDI1 PPDPF ARL6IP5 DYNLL1 NDFIP1 TUBB2A REEP5 PFN2 THY1 KCNAB2 CTBP1 PPP2CA RPL13A BEX1 YWHAQ TMX4 TMTC1 ALDH5A1 MTRNR2L12 YWHAB PTPRS BASP1 CD99L2 RPL3 PAM NCAM2 AP1S1 TXLNB CKB HSP90AB1 SPOCK2 TMEM130 MTRNR2L6 PGK1 USP5 PPP2R2B CLTA NHP2 ATP2B2 POLR2K GAD2 ATP1A1 FAM174A GABRQ NDUFA5 CITED2 CALM1 SLC22A17 SCAMP5 RAB6A PREPL ATP6V0E2 RP11-195F19.5 PKM NAP1L2 EHD3 SNCG TSC22D1 ATP6AP1 TAGLN3 PSMC1 NXPH1 KIF5A RSL24D1 HSP90AA1 CDH13 COX6A1 ASAP1 RPL11 COX6C ITFG1 AP2M1 PEBP1 CHP1 SNX17 MTCH1 PRDX5 TSPYL1 TLE4 EIF4G2 DNM3 MLF2 ITM2B LPPR4 CTNND2 SEPW1 DPYSL2 CAMKK2 RPL39 GHITM SCARA5 NDFIP2 STMN1 SLC6A17 SKP1 SUMO3 YWHAZ DNAJB9 NCOA4 PTMA STX1B NREP MZT2B SNCB SCD5 NSF PEA15 STXBP6 NEGR1 SLC6A1 KIF3C JUND SLC9A6 MFN2 MT-ND1 EIF1 BCL11B TPI1 HNRNPH2 TM2D3 KCNC2 LZTS1 ZFAND5 UBE2V2 WNT16 CLEC2L CISD1 RAB11A ACOT7 SLC32A1 TERF2IP RAB5C SLC25A6 ATP1A3 PPIA PCDH19 NPTXR ELAVL4 PGRMC1 EID1 PHYHIPL UBB NDUFA4 SLC26A10 BAALC EPS15 DYNLL2 DIRAS2 MAPK1 ITM2C TOMM70A NDUFS5 ARPP19 SULT4A1 BSN MYL6 TPT1 PRKAR1A NPTN DNER RPS3A CLGN ADSS SLIT1 SCN1A ETV5 PTPRH ASNA1 RPS5 LGI2 PCMT1 NRSN2 CAMK2G MDH2 EIF1B RAB3C NPAS3 COL6A1 CAPZB STX1A TRIM37 PPTC7 SOX2 FTH1 DPP6 NDUFB7 NGRN RPL6 NELL1 ARHGDIG CX3CL1 SRD5A1 DLX1 FAM84A SNX10 CALM2 RP11-20I23.1 CHGB SUMO2 WNT6 KIAA1024 FGF12 NDN FSCN1 SYT5 OLFM2 RPS15 SERINC3 PLD3 SLC31A2 MAPKAPK2 ATP6V1C1 SUB1 EIF1AX FAM131B RNF11 COX7C MAP1LC3B MAP1LC3A DYNC1I1 ATPAF1 CCDC124 HSPE1 GOT1 PTRF PLTP DYNLT3 DDAH1 HLA-B SRP14 ANAPC13 NFE2L1 SLC12A5 GPX1 RPS27A LMBR1 CETN2 CHMP5 MYEOV2 MAPRE3 CDS1 ATRN COX6B1 FARSA FTL HIGD1A DPY19L1 RASGRF2 HK1 KIAA1211 PSMA7 SOD1 YIPF1 PTK2B SNRPN MRFAP1 CCDC78 C6ORF1 MORF4L2 BEX4 RGS4 SOX11 WBP2 PPP3CB SLC7A5 KLHL5 GYG1 RAP1GAP2 NAP1L5 LIG1 ATP6V1A CTSD ENSA OPCML CYCS DPF3 COX7A2L C7ORF50 IGF1 COMMD6 HSPA8 ARF1 SYT11 MT-ND4L PPP2R4 CEND1 SH3BGRL3 TGOLN2 CYFIP2 NPPC ECM1 ZNF319 MTND1P23 LAGE3 C1QBP SCOC ARF3 PPP2R2C RASGRP1 HMP19 IQSEC1 STMN3 TUBB3 EDIL3 EGFL7 LHX6 WBP11 ANAPC11 RPS4X CXXC4 TOMM7 ROBO2 SIRPA BCL6 TCEB2 UHMK1 OPA1 KIFAP3 PTPRN2 IFI6 VAT1L NRIP3 CABYR BEX2 HEY1 RPL35 KIT WIF1 EFR3A CDK5R1 RABAC1 NPY FAM131C VDAC3 UBA52 TMEM258 STMN4 MYL12B ATP5F1 EPHB6 RPH3A LYPD6 RAB6B C14ORF2 REEP2 DCLK1 TSPYL4 DLD B3GALT2 PDZD11 DNAJA1 NCALD FAM96B RPS6 PHYHIP CDR2L RAB27B NHP2L1 ATP5G1 RRAGA C9ORF16 DBNDD1 VAMP1 MAP2K4 ZNF536 GLO1 CDK17 GRIN1 DNAJC5 PAFAH1B2 KCNF1 PPP3CA GNB1 NXPH4 MYRIP CADM3 MRPL33 UQCRH CREG2 BTBD10 ARHGAP35 RPS19BP1 ACLY TMSB10 STMN2 PRUNE2 MTRNR2L8 ATP6AP2 SLC17A7 RAB3A HDLBP GABARAPL1 YWHAH ANXA7 C1ORF54 SEMA3A TBCA SYNGR1 SSTR2 RTKN SRM ATP5G2 RAB2A MAP2K1 GPX4 COX4I1 SNAP91 MAFB TSPYL5 ALDOA GSTO1 LINC01314 NRGN CAPZA2 LDOC1 SYT17 PSAP FAM219A FLOT2 C11ORF31 PLCB1 RPL37A IGFBP6 B3GNT1 KIF1A SEC61G CAPNS1 SCN3B GAP43 OCIAD1 INPP5F SPRN GABARAPL2 DCTN1 INA RPL8 YAE1D1 PELI3 OAZ1 ATP6V0C FAM163B C19ORF43 ATP6V0D1 SEZ6L2 GRIN3A PRSS3 CSDE1 CRIM1 TCEAL3 RAB11FIP5 MANBAL CACNA2D2 BSCL2 RP11-219A15.1 CYB5R3 PCDHGA6 PCDHGA10 PCDHGA5 PCDHA4 PCDHA10 PCDHAC1 PCDHA9\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "SST-expressing interneuron" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: SST RAB3B RTN4 SPOCK3 RTN3 MT-CO1 MT-ATP6 TMSB4X ATP1B1 NCAM2 CLSTN1 BEX1 ATP6V0E2 INA GPM6A DNAJC6 NGFRAP1 SYT1 SLC22A17 ATP1A3 FXYD6 EFR3A ARHGDIG NDRG4 NRIP3 PPP1CB AP2M1 SCD5 CNTNAP3 PTPRM ELAVL2 SRP14 HSP90AA1 MAP1B FAIM2 GNG2 CADM2 ATP2A2 ALCAM PSMD8 RP11-111M22.2 COL25A1 DCN KCNA2 BEX4 SYNJ1 HMP19 SNAP25 RPL21 YWHAB CHN1 VAMP2 SLC12A5 PVRL1 ACTR10 MT-CO3 TSC22D1 APLP2 KLC1 CDH13 SPOCK2 CDK5R1 TMSB10 STXBP1 SCN2B CLPTM1 PTPRN MLF2 RPL35 DPYSL2 OXR1 COL6A1 PIN1 SPARCL1 SEPW1 AP3S1 CKB SNCA CAPZB NR1I3 TUBD1 ENPP2 RAB1A PSAP PAFAH1B2 WLS TKT RHBDD2 CBX6 RAB5C KIF5A TCEA2 TMEM151A ANAPC11 D4S234E LDOC1 INPP5F SLC1A2 OR6D1P TMEM35 ARHGAP6 PGRMC1 HSPA8 ATP9A VSTM2L DPP6 SYT4 SERPINI1 MRPL47 ATP5F1 CDKN2D CLTC SCN1A ENO1 DCC TBC1D7 CD59 TSPYL4 CHGB ARL6IP1 ALDOC QDPR NRF1 GRIK1 PCDH19 CTSD SPOCK1 ATXN10 COX6C SPCS2 RPS15 BANF1 IRS4 PRDX5 IKBKE TPGS2 ABHD14A ARL6IP5 ARL4C BCL11B TSPAN12 KCNC2 CHL1 PNMAL1 COX14 PJA2 RP11-195F19.5 UQCRH ACTG1 SLC39A10 OLFM2 STMN3 CNTN1 SYT13 PTCHD4 NKIRAS1 RPL39 RAPGEF5 DKK1 RPS28 MORF4L1 RPS6 GAD1 SMAP2 NAPB NREP PRNP PGAM1 CADM3 CHP1 USMG5 CYCS UCHL1 NCBP2-AS2 TUBB4A CAP2 ROBO2 NCALD SNX10 CSDE1 PDCD5 SLC19A1 TRHDE ADAM23 PLCB1 RPL23A PDE1A PPP2R2C H2AFZ SH3GL2 STMN2 RPL13 AC244489.1 DIRAS1 RAB2A ATP2B4 STXBP6 C9ORF16 GAD2 NRCAM VDAC3 GAPDH UQCRC2 HMGCS1 UBE2F TUBB4B RPS3A MT-ND4 TPT1 CRTAC1 PREPL KIF21A ITFG1 TMEM130 SYNGR1 DAB2 METTL23 RGS4 ITM2B MT3 LMBRD2 FTH1 LINGO1 SNCG GDI1 UBC NDUFA4 PSD3 CPLX1 FAM127A LYNX1 TIMP2 CALM1 TMX4 ASAP1 TAGLN3 PPP2R1A UTRN YWHAZ SUCLA2 PIP5K1B SCAMP5 BTBD10 MAGED1 OCIAD1 NDUFS5 FAM84A CERS6 RELL2 ZMAT2 CYFIP2 MT-ND3 ABCA8 UQCRFS1 TCEAL3 ATP2B2 CCDC85B RAB6A SSTR2 UBE2N FABP3 UQCR11 RASGRF2 CFL1 MAF SERINC1 CIAPIN1 NHP2 GBE1 MRPL33 HSP90AB1 MT-CYB NAT8L RAB40B RNF11 NCDN RAB3IP TOMM20 GABARAPL1 SFRP1 EPS15 TUBA4A PSMB3 ATP6V0C RP11-20I23.1 IDS YBX3 BSCL2 RPL13A PCDHGA6 PCDHGA10 PCDHGA5 PCDHAC1 PCDHA4 PCDHA10 PCDHA9\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "SST-expressing interneuron" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MT-CO1 MT-CO3 CALM2 ATP1B1 SPARCL1 FTH1 SPOCK1 EIF1 NDUFV1 RAB3IP CALM3 SYT4 SPOCK3 ETV1 RPL13 MAF NDUFB8 MT-CYB RPL31 ARPP19 PREPL GDA RPL38 SYT1 SNAP25 RPL21 MRPL15 SCG2 TMA7 SOX6 SERPINI1 DLX1 CERS6 GMFB BEX1 SKP1 VSTM2A PNMA2 ADAMTS5 KCNK2 MAP7D1 GRIK1 GNB1 RAB6B TMOD2 PSD3 MTPN NELL2 RTN3 FTL SERINC1 MYL6 C1ORF52 BSN STK24 MTRNR2L12 MAP1LC3B TMEM35 OXCT1 ATP5O FGF12 RPS19BP1 MT-ND1 MAFB TOMM20 RPS15 BCAP31 TMSB4X TSPYL1 TGOLN2 LMO4 SLC9A1 ERH ZNF536 ACTB CAPZB CLSTN1 ISCU ST6GALNAC3 TMEM59L CYFIP2 ENO2 NDUFS5 DYNLL1 PRKACB CDC42SE2 AP2M1 MT-CO2 GAPDH ISCA1 GNG2 PPP2R1A PRNP DPYSL2 ATP6AP1 ATP1A1 SLC8A2 NDRG4 RP11-111M22.2 RTN1 TSPAN7 PGM2L1 NGFRAP1 TMX4 RAB3B SOD1 TENM1 PDZRN4 HIGD1A TUBA1A ELAVL2 CEND1 VDAC3 RPS4X SEPT4 SERINC3 THSD7A FIGN C19ORF70 MDH2 FLOT2 COMMD6 ARHGAP35 SMAP2 MTRNR2L8 CCT5 CALM1 RPS28 YWHAB MTATP6P1 CFL1 SCD5 MTRNR2L1 KIF1A DSTN RPL3 MT-ATP6 ROBO2 ITFG1 NTHL1 TCEAL7 BSCL2 RNASEK-C17ORF49 MTRNR2L6 ALDOA NGRN RPL13A RPS3A BIRC5 CYB5R3 PCDHGA6 PCDHGA10 PCDHGA5\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "SST-expressing interneuron" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MT-CO3 MT-CO2 MT-ND4 SYT1 MTRNR2L1 MT-CO1 MT-ND3 SNAP25 MT-ND1 DNER TAC1 TMSB4X SARAF GDI1 CALM1 ZNF385D WASL ITM2C HSP90AA1 ASAP1 CADM3 YWHAG ATP1B1 MAF SFRP1 MORF4L1 AP2M1 CCK MT-CYB SLC6A1 PTCHD4 OPCML CALM3 MTRNR2L6 CYB5R3 MTCH1 CTSD GPX1 MYL6B SRM MTPN COX5B TOMM20 ETS2 ARL6IP1 SCN1A NRCAM STX1A CHCHD2 RTN4 FXYD6 NAP1L3 NUDT21 NEGR1 PSMD2 CDK14 PSD3 MAPRE2 CXXC4 GRIN1 TEX15 PPP2R2B KCNMB4 MAFB RAB40B SNCA PNMA2 VPS35 NRIP3 PRKACB ATP6V1F NGFRAP1 TPD52 ARPP19 FAM174A SNX17 ACTB PPP1R9B HDDC2 CENPVP3 MAGED1 PGRMC1 ATP6V1C1 KIF21A SOX6 PREPL SERINC1 APP KRAS TUBB2A ERBB4 FGF12 RABAC1 MAP1B ZNF536 PPP1CB TRIM37 SPOCK2 GPRC5B NNAT STXBP1 MAP2K4 PCMT1 NPTN VSNL1 MYL6 NPPC FKBP4 ZBTB20 RPL15 IDS SUCLA2 FAT3 KIT CLU ARL2BP DNAJC5 MDGA1 PRKAR1B HSP90AB1 CLSTN1 GRIN3A PPIA PPP2CB WLS SNRPN GPM6A BASP1 GOLIM4 NDRG4 TERF2IP FAM149B1 NAP1L2 IQSEC1 SLC38A1 JUND ANAPC13 CYCS DPYSL2 CTGF HMP19 NAT8L TUBA1B PTMA POMP ITM2B PPP3R1 SLC17A7 ATP1B2 RPL17-C18ORF32 PSMB3 RPL17 TF\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "SST-expressing interneuron" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MT-CO3 SYT1 GPM6A CHN1 PLCB1 FXYD6 TUBB2A YWHAH MT-CO2 PGRMC1 SNAP25 EXTL2 GAPDH SYT13 PRNP LMO4 ATP6V1B2 APLP2 RTN1 YWHAG NDFIP1 YWHAZ CAP2 CAMKK2 APP MTCH1 ENC1 MAP1B PREPL ENO2 MAPK1 CALM3 D4S234E SYT3 CFL1 CCK MT-ND2 PEA15 TSPYL4 NAPB LAGE3 SEPW1 GDA SLC24A2 KCNMB4 TUBA1A RP11-632C17__A.1 TMSB10 PIN1 PLCXD2 MT-ND3 PFKP CTXN1 GAP43 WBP2 OCIAD1 CAPZA2 SLC7A1 STMN4 SMAP2 RPH3A MT-ND1 VSTM2L SRP9 LMO3 MT-ND4L ATP6V1G2 ANXA7 UCHL1 TSPYL5 DYNC1I1 GLDN MORF4L2 UBE2E3 PCMT1 NEFM ARL8B SLC6A17 PPIA MT-ATP6 STMN2 AP2M1 PKM TCEB2 CPE MARCKS VDAC2 CLU POLR2M CTNND2 ATP2A2 BCL11B TENM3 GRIN2A ITGA6 NRIP3 STRAP FAM163B FUNDC1 GRIN1 SUMO3 CREG2 TMA7 ISG15 MSMO1 VAMP1 UQCR10 ROBO2 TRAPPC1 THY1 TSPAN7 GRINA SUSD4 DHCR24 PRKCE PRKCB ATP6V1F ATP2B4 MAP4 INSIG1 RPL11 HES4 CIAPIN1 MAP2K4 TMX4 FBXL16 SUB1 PGK1 MGST3 NDUFA1 CYP26B1 STX1A MT-CO1 SYNGR1 NGRN SNX17 ZBTB18 MED10 COX6B1 NRGN PRKCG BTBD10 OPA1 HSP90AB1 MAPRE3 SPARCL1 PPP2CB IQSEC1 MTATP6P1 STMN1 TPD52 BSG ID2 VSNL1 RAB1A GPR126 YWHAB OXR1 UBE2V2 DGUOK SCD5 SLC25A5 PLS3 RAPGEF5 MAP7D2 FXYD7 SLC22A17 SERPINF1 CCDC85B MT-ND4 DIRAS1 UBQLN2 DNM3 SERINC1 CABP1 EPHA6 STUB1 SQLE BAI2 UHMK1 MAL2 RTN3 INPP5F TMEM70 PRDX5 NECAB1 PEBP1 SPOCK3 PRDX3 NAT8L STXBP1 NGEF CKB COX7B NDUFS5 RAB3B ACOT7 GABARAPL2 CALM1 AKAP12 ITM2C IDS RP11-219A15.1\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "SST-expressing interneuron" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MT-CO1 MT-ND4 MT-CO2 MT-CO3 SYT13 MT-ND3 CALM1 MT-ATP6 TAC3 SPARCL1 MAP1B SPOCK3 EIF4G2 EDNRA AP3S1 PRNP SYNPR ENO2 FXYD6 PTMA KCNC2 AES FTH1 CTU2 EID1 GPM6A ATP1B1 PREPL RTN1 EIF1AX NPAS3 CLSTN1 QKI TRHDE CADM2 BSN RCAN2 CPLX3 SLC6A17 ATP5I PGM2L1 TM2D3 MT-ND4L PPP2CB TUBB2B PPP2R2C SPTBN1 CLIP2 JUND CHGB STXBP1 TPGS2 PIP4K2A SLC6A1 TLN2 SNRPN SYNGR3 DIRAS2 TGOLN2 PPP3CB VAMP2 INA ADAMTS5 TMSB10 DYNLRB1 RAP1GAP2 ATP5O MAPK1 MTATP6P1 NDUFA4L2 DYNLT3 ITM2B OXR1 ATP6V1F GRIK1 RPL3 GDI1 SCN2B HOMER1 SAMM50 TMSB4X SLC9A6 PCSK5 PDE1C APP PFN1 MED10 SYNGR1 TSPYL1 PGRMC1 ITFG1 DNAJC6 STXBP6 DNAJB6 RAB6A LHFPL3 SSTR2 VEGFA NCDN RPL18A NAPB NBL1 CLU AP2M1 PGAM1 MBOAT7 ACTG1 ATP6V1B2 KCNIP1 FASN GABARAPL1 SYT4 SNAP91 NDUFB4 NDUFB11 MAF KCNF1 CISD1 AP2S1 RAB3C NDUFA2 FTL RTN4 CHN1 MTRNR2L1 CNRIP1 FAIM2 ARL1 LIMK1 SYT1 ATP1A3 NXPH1 EFR3A MT-ND1 NAP1L2 CDH13 PNMA2 BNIP3 RPS28 YWHAG NAP1L3 NDUFA4 CYFIP2 COPRS HSP90AA1 ATP6V0B SERINC1 CERS6 CALM2 BEX4 SCN1A MAP1LC3B EPB41L3 RPS5 GOT2 EIF4A2 RELN COX6C DLD SERINC3 CSDE1 MT-CYB VSNL1 NMU ARL6IP1 APLP2 DNAJA1 MAP1LC3A OLFM1 SYT11 D4S234E NDUFC1 RTN3 TMEM200C RNASEK-C17ORF49 RPS15 MTRNR2L6 GPR98 ALDOA TUBB3 AC244489.1 ZNF385D RAB3B RPL21 PCDHGA5 PCDHGA10 PCDHGA6 NR1I3 PLEKHD1\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "SST-expressing interneuron" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: SYT1 MT-CO2 MT-ND4 MT-CO3 ATP1B1 GAD1 MT-ND3 CLSTN1 SPARCL1 SNAP25 SNRPN FAIM2 MT-CO1 ACTG1 ELAVL2 GPM6A TRHDE NEGR1 ARL4C SYT4 PNMA2 ENO2 MAP1LC3B SLC39A10 NDUFA4 TPPP YWHAG CAMK2D DPYSL2 TSPYL1 RAPGEF5 PKM FXYD6 PTPRM FTL CAMK2N2 GAPDH MT-ND2 SST LMBRD2 PJA2 PAM ACTB SLC24A2 INPP5F GRIK1 VSTM2L PPP3CB TBC1D15 SERINC1 NAP1L2 SLC6A1 BSCL2 PRNP ENO1 NPTN TEX2 CALM1 SLC9A6 SNCA KLC1 MDH1 RCAN2 MFN2 NDRG4 TUBA1B GRIN1 TMSB10 VGF ATP6AP1 SKP1 ARF1 MAP4 EIF4A2 CHN1 WSCD1 TUBA4A SLC38A1 RPL37A SV2B PGRMC1 NCAM2 WLS SLC12A5 SPOCK1 FGF12 STX1A ELFN1 MORF4L2 PPP2CB NBL1 RHEB KIF21A RTN3 EDIL3 RND3 THY1 YWHAZ PRKACB SARAF SPOCK2 NUDT21 CHCHD2 DCLK1 COX6A1 UBB RTN1 TUBB SPTBN1 APP WSB2 SPOCK3 CNTN1 SYNPR ATXN10 WBSCR17 CYFIP2 HMP19 VAMP2 GPX4 SNAP91 YWHAH RPL13 ISCA1 OAZ1 NREP GDI1 TUBB2A VSNL1 MAGEH1 ATP6V1B2 MAPK8IP2 MTCH1 CBX6 SEMA4G HSPBP1 NPY CALM3 UCHL1 HK1 PPP2R2B INA CD59 SSBP3 C1ORF233 CNR1 CDH13 TMSB4X MT-ND4L FBXW11 PPP3R1 FAM219A ATP6V1F CALM2 HSP90AB1 GOT1 RAB3C MT-ATP6 PDP1 ACTR6 CHGB MZT1 KCNF1 GNAQ RHBDD2 GSTP1 KCNA2 HCN1 OAT IGF1 LDHB CORT COX8A PITHD1 GHITM SUB1 GNG2 SSTR2 GYG1 AP1S1 UBA1 KCNA1 INHBB CYB5R3 TKT BCAT1 ISCU ATP6V0D1 CCK RPL11 RPS19BP1 NDUFA5 DYNLL2 ECM1 TPD52 PGK1 MBOAT7 BAD CHL1 DCC RASSF8 ARL6IP5 SLITRK1 PRPS1 COPS7A STMN1 SYNJ1 HSPA8 SYN1 RP11-20I23.1 SCN3B GSTO1 RPL12 NCDN STUB1 MTRNR2L12 DYNLRB1 ARL6IP1 SRM STMN4 SLC22A17 C1QBP TPGS2 OPCML CHP1 TMEM130 CDK5R1 EPDR1 CADM2 ERBB4 TSPYL4 TOMM20 MAGED2 IQSEC1 SHISA6 ATP6V0B F3 GMFB PRKCE RASGRF1 NCEH1 SIRPA ITFG1 TENM1 APLP2 BNIP3 HEG1 MTPN NCOA4 SYT17 ADARB2 LUZP2 NAP1L3 RAB6B DYNC1I1 PEBP1 AES TMEM191A SOX6 RPL15 FAM127A TMTC1 RPL39 HMGCR COX5B CX3CL1 MAP1B LINC00086 SEZ6L2 SCAMP5 TMEM35 ATP1A3 ATP6V0C OXR1 CTNNB1 ATP2A2 SERINC3 AP2M1 JUND ATP5E RPL18A PHKG1 ETV5 KCNAB1 ARPC5L SOX11 WDR47 C1QL1 SYT11 MAP7D1 RAB3B SNCB NDUFA4L2 KCNAB2 WBP11 PDE1C SEMA3A PREPL SCD5 COX7A2 CLU ARPP19 AP3S1 SYT5 MLLT11 BSN NMNAT2 OPA1 HOMER1 TUBB2B DSTN PLCB1 NGFRAP1 SLC25A6 REPS2 MAP2K1 NRIP3 ITM2B DPY19L1 GNB1 OXCT1 UBA52 YWHAB NDUFA13 PNMA1 NRCAM PRUNE2 KCNMB4 MRPS21 PHYHIPL THEMIS2 DKK3 MAPRE2 DIRAS1 NCALD PPA1 MAL2 EIF1AX VCAN DLX1 S100A6 RELN SYN2 UQCRC2 CLIP3 ARX PNMAL1 MAOB CISD1 RPS15 PRKAR1B POLR3H TLN2 TMOD2 PCBP1 NAPB TBCA PPIA FAM43B SMS MT-CYB BIRC5 PRDM1 RSPO3 RAB1A IDS NIPA1 GPX1 LANCL1 NAP1L5 GRIN3A NXPH1 TMX4 CRHBP LPPR4 CAMK2G MAF ATP6V1G2 NSF NUDT4 NGRN PCDHA10 PCDHA4 PCDHAC1 PCDHA9\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "SST-expressing interneuron" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MT-CO1 SST RPL38 TUBA1B ATP1B1 GRIK1 TOMM7 CHN1 EIF4A2 ENO2 RPL35 RPL37A RAB6B RTN3 PITHD1 SLC6A1 ARL6IP1 MT-ND1 IDS AES SYT1 CKB TSPYL1 FTH1 RP11-111M22.2 MT-CO3 FXYD6 STX1A RPL41 MT-ND4 MTG1 NAPA BEX1 PPIA TMSB10 APP MT-ND2 ATP5B PNMA2 NGFRAP1 SOD1 RPS10 CNTNAP5 POMP ATP6V0E2 SEZ6L2 SNRPN UQCRB PHF11 TAC3 UBC ATP6V1B2 GNB1 CCK YWHAG OXR1 ATP5J BEX2 RPL8 TBCB PTPRN2 MT-CYB WASL RAB3A RAB7A MDH1 ZBTB20 DYNLL2 H2AFZ FAM127A GNG3 RPS19BP1 UBQLN2 GRIN1 PTMA ATP5E LMBR1 GAPDH ATP6AP1 QKI DYNLL1 RPL23A RASGRF2 CTSD CADM3 DLX1 SERF2 PTPRT ATP6V1F OLFM2 RPS12 PPP3CB SAMM50 PNOC EIF1AX TRHDE SLC12A5 COX6C SYT4 CALM2 CYB5R3 CAMK2D PARM1 C1ORF194 NDUFA8 RPL12 TSPAN7 RPL13A CDK17 ITM2B KLC1 NOP10 GPM6A PLD3 PPP2R2B HMP19 CYP2R1 SYNGR1 COX7A2L RTN1 OR6D1P KLHL5 CALM1 SLC25A22 CIAPIN1 SKP1 NAP1L3 BIRC5 COX7C RPL7 RPL15 COPS8 SLC38A1 DCN PKM VSTM2L COX5A DEXI SNAP25 PODXL RELL2 UCHL1 NREP SEPT4 POLR2L TERF2IP MT-CO2 COX6A1 PPDPF COX8A NDUFAF3 CNTN1 BLVRB COBLL1 NAP1L2 RTN4 RTDR1 MT-ND3 UQCR11 RPS3A PJA2 SLC22A17 ARPP19 SNCB RTBDN RHBDD2 OAZ1 PFN2 HSPA8 CAPNS1 UBE2M SOX11 PBX3 TMEM65 MRPL47 NCEH1 RPL31 C1D SUMO2 RPS6 ARPC4 MAPK8IP2 ATP9A COL25A1 PTPRS MAPRE3 MED10 CNR1 TMEM130 PRDX5 DRAP1 ARL6IP5 PI4KA NR2F2 SLC39A10 MRPL37 CAPZB NDUFA4 PLS3 GPX4 PFKP RAB3B SYTL2 PSMB3 RP11-219A15.1\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "SST-expressing interneuron" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: SST TAC1 SNAP25 SYT1 RP11-111M22.2 GAD1 TMEM59L ATP1A3 CALM2 GHITM CREG2 NAPB GRIK1 FKBP8 MYPN RPS28 COX4I1 ATP5G3 RTN3 TM2D3 MT-CO1 GTF2B ATP5B MZT2B SPARCL1 FLT3 MRPS7 SNCG MT-CYB RPL37A HSP90AA1 FAM163B DCTN3 ELAVL2 TMEM14A AP2M1 UCHL1 PSMC3 SYT4 COL6A1 PNMA1 CAMK2D TAGLN3 RPL13 MRPL52 ATP6V1E1 TBC1D7 MAP1B EIF1B SCN1A PEX5L MPPED1 BRICD5 ATP5J ATP6V0E2 MPP1 SYNGR1 DYNC1I1 PPP2R2C BEX1 SUSD4 ATP6AP2 RRM2B BTBD11 MRPL20 TUBB4B BHLHE40 C6ORF1 PKM NGFRAP1 RPS3A CNTNAP3 GDE1 CNRIP1 GABRA5 BIRC5 THY1 KCNAB1 LYNX1 ATP5I MARCKSL1 PTCHD4 VSNL1 C19ORF43 HEY1 PNKD STMN4 MT-ND3 CD59 UQCR11 CCK EFHD2 MAL2 RPH3A RPL10A ELAVL4 HSPE1 MORF4L2 RPL41 TMSB10 MT-ATP6 ITM2B CRH MT-ND4 PRKACB PINK1 MT-ND2 SLC22A17 RGS4 SPTBN1 PPDPF RPL11 BCAP31 VDAC2 MDH2 RPL21 GRIK3 C7ORF50 KCNIP1 SCN3B PEBP1 RPS27A GNB1 PGK1 SLC6A1 ERBB3 MAGED2 DNM3 RTN4 EPB41L3 NPAS3 CTSD SSTR2 GDI1 ERH ACTG1 PNOC CAMK2G FAM134A GABARAPL1 TMEM11 KIF1A WDR4 GAPDH ENO2 ARL6IP1 CLU FAIM2 TMEM130 RPL26 RPL3 PRPS1 MYL6B AK3P3 PRDX2 SLC24A2 NRGN PSENEN UQCRH CAPZB SCOC KIF5A REEP5 TUBA1B ECEL1 SNAP91 APP SYNPR MTRNR2L12 CDC37 RPL7 ZBBX TPPP PPP2R1A RPS4X OLFM2 ATP6V0B SAP18 RBX1 ARPP19 YWHAB SYN1 RPL31 CKB UBA1 PSMD2 HSPA8 TCEB2 NCDN ATP1B1 BSCL2 GABARAP B2M CORT IDS ALDOA HNRNPA1P40 PLEKHD1\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "SST-expressing interneuron" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MT-CO1 RAB3B CLSTN1 SPOCK2 MT-ND4 ARL6IP1 TIMP2 CDK5R1 EPHB6 BCL11B CDC42SE2 GPM6A MAP1B RPL35 MYL6B RPS27A EPS15 SYT1 RPS3A RP11-111M22.2 SNAP25 SEMA5A PGRMC1 VPS35 RAB3A RPL21 CERS6 ATP5F1 NXPH2 APLP2 SPOCK3 NPTXR CDKN2D CDH13 KCNC2 CSDE1 RTN4 MT-CO2 PPIA USMG5 SLC6A1 VGF LRP1B ATP1B1 NEGR1 RPS15 COX4I1 PLAUR RPL26 SLC1A2 TSPAN7 RPS19BP1 TENM1 CPLX1 PRNP YWHAH EID1 ATP6V1F UHMK1 CNTN1 GRIK3 SARAF COX7C ARL6IP5 GABRA1 FAM3C MAPK1 RBX1 PJA2 DKK3 SNX17 RPL13A STMN1 CYB5R3 BEX4 CLDND2 GPR158 RPL38 CPE CCND1 YWHAZ ANLN CLSTN2 FSCN1 CALM3 DYNLL2 BCAT1 PACSIN1 GRINA ACOT7 GNAQ PRKACB SYNGR1 FGF12 UCHL1 PEBP1 EIF1 SST MAP1A MT-CO3 OCIAD1 GAD1 SYT17 ATP5E RPL32 VSNL1 TUBA1B SERF2 RAP1GDS1 TRIM37 PRKCB RPL41 NRF1 CACNA2D2 PTPRN ATP6AP2 RPL17 SYNPR CHN1 RHOB ATP1A1 BAG4 RASGRF2 YWHAG SNRNP25 OXR1 PPP2CA CMAS RTN3 EDN1 CORO1B PREPL TSC22D4 SLC38A1 PTK2B MBP MAP2K1 RPL23A UQCRFS1 NAPB RAB6A ANKRD20A11P MPPED1 FXYD6 HMP19 ATP2B2 VSTM2L IDS NGRN B2M GTF2H2C_2\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "SST-expressing interneuron" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MT-CO3 MT-CO1 MT-ND4 MT-CO2 MTRNR2L12 MT-ATP6 TBC1D15 MT-ND1 RAB3B APP SYT1 ATP1B1 ZNF385D SNAP25 ACTG1 SPOCK3 MT-ND2 MT-CYB SYNPR GAD1 MTRNR2L1 RTN3 HILPDA NCAM2 PPP2CB OXR1 CADM2 NMNAT2 CLTA NPAS3 MT-ND5 PPIA YWHAG RPS5 FAIM2 RND3 IDS CLSTN1 SYNJ1 ATP6V1C1 PCDHGA6 EIF4A2 FAM84A MTATP6P1 EPHA6 RPL37A GRIN1 PNMA2 TOMM7 CALM3 HSP90AB1 CAMK2G RPL38 MT-ND3 EXTL2 TMSB10 RASGRF2 CHL1 ATP5I HSPA4 PREPL CREG2 FXYD6 KIF1A SLC32A1 RAB3C PSD3 VDAC3 BCAP31 NPTN COX6B1 ITM2B SKP1 RPS3A TMEM150C ANXA6 RANBP1 GSTT1 SLC38A1 FAM19A2 SRM SARAF PDP1 CABP1 WFS1 RHEB RAB40B STMN2 PPA1 CDH8 ALCAM FBN2 MB21D2 PTPRN2 TSPYL4 NECAB1 OCIAD1 PCSK1N SCN3B BASP1 TRHDE ATP6V1A PRDM1 PRNP BAG4 ANK1 PRKACB MDH1 STXBP1 TTN NXPH2 TUBA1A CBLN4 TIMP2 CTNND2 KCNAB2 GUCY1B3 CNR1 WASF1 GDI1 RASGEF1B SCD5 STRAP SNRPE EGFL7 BEX1 MTCH1 SLC39A10 SELM ABHD14A RHOB PAM HDLBP STX1B SEC61G LGI2 UBE2QL1 RPS2 CDH7 RPL39 GPM6A PTPRT FIGF RPS15 BTBD10 MAP1B SLC12A5 THY1 SCG2 RCAN2 SSBP3 SLC8A2 RAP2A ARF1 GABRG1 EPS15 TPD52 MTRNR2L8 SLC7A8 NAPA SPTBN1 FSTL5 SLC24A2 TMA7 WI2-1896O14.1 MAPRE3 KLHL5 NCDN ATP6V0E2 CD63 ELAVL4 ARL2BP EML3 RAB3A RTN4 ATP6V1F TENM1 TMX4 CDH13 FAT3 OLIG1 SYT11 MTRNR2L6 TSPAN7 DYNLL2 UCHL1 ATP1B2 SEPW1 SSTR2 MAGEH1 TMEM200C PRKCB SPARCL1 MBP ROBO2 RAB2A NDRG3 NGRN ATP6V0C RPL41 RP11-20I23.1 SYT5 RPL36A RPL26 SYTL2 HNRNPA1P40 DNAJC21\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "SST-expressing interneuron" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: SST SNAP25 SYNPR NGFRAP1 OXR1 SKP1 SRM PRKACB SARAF TMEM59L ATP6V0E2 UCHL1 GRIK1 RPL39 RPL32 CPLX1 CALM2 VAMP2 ATP1A3 SERINC1 GPM6A JUND MT-CO3 MT-CO1 SPARCL1 RPS15 SCN3B RPL35 HSP90AB1 SERPINI1 APLP1 RPL37A RPS6 RPL36A RPL41 PNOC PFN2 ZNF385D SYTL2 RAB3B BIRC5 DKK3 UQCR10 PI4KA PDP1 RPS4X CFH ITM2B FTL RPL8 PPP2R1A TPGS2 PTPRT TPD52 MTRNR2L1 HN1 EEF1A2 VSTM2L PPIA COX7B DLX1 NDUFB3 CDH8 BASP1 STMN2 MT-ND4 KIF21A GRIP2 YWHAG KIF1A UQCRQ MAF NDUFA13 OAT RTN1 PHPT1 FBXO2 RPS28 PCYT2 ATP6AP2 UQCRFS1 AQP7 UBA52 ROBO2 PEG10 CALM1 RPS3A SYT1 DSTN IDS MT-CO2 CHL1 FAIM2 C11ORF31 TSC22D1 AP2M1 COX7A2 SCN1B RTN3 SOX11 EPHB6 GDI1 RAPGEF5 PCSK1N TMEM132C ATP1B1 STRAP RTN4 LL0XNC01-16G2.1 FRMD4B TCEB2 SCAMP5 APLP2 CLU GRIN1 YWHAB CADM2 TOMM22 NHP2L1 NFE2L1 NDUFB2 SPOCK3 TAGLN3 ATG9B RAB6B TMSB4X C14ORF2 NR2F2 SH3GL2 CD99L2 SCN2B RP11-111M22.2 NDN ITFG1 STMN1 HPRT1 UROS ATP2A2 RPS12 MT-ND3 TMSB10 RPL21 CYFIP2 ATP5E LDHB CAPNS1 COX7C ARL8B EIF1AX ATP5B NAP1L3 RAB3IP FGF12 POMP TPT1 SERF2 DNM3 S100A6 MAPK1 SLC22A17 SLC24A2 PEBP1 CBX6 SLC26A10 PNKD AC244489.1 NSF ALDOA OR6D1P TF\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "SST-expressing interneuron" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MT-CO2 SYT1 MT-ND4 MT-CO1 MT-CO3 SNAP25 MAP1B MT-ND3 MT-ATP6 CHN1 TSPAN7 MTATP6P1 VAMP2 CREG2 CPLX2 CADM2 SST MTRNR2L1 TENM3 FTL EFR3A APLP2 PIK3R1 SPARCL1 MT-ND2 KLC1 RCAN3 PDE1A ATP1B1 CPE ARL4C RAB3C STMN2 PLCB1 PJA2 GAP43 FXYD6 CTBP1 GPM6A STXBP1 MT-CYB APP RGS4 RLIM PRNP CFL1 SMIM13 SRP9 ATP6V0C PRKCE AZIN1 CRYM SLC22A17 TOLLIP RANBP1 NDRG3 FSCN1 CLTC CRKL PLCH1 ASAP1 TPT1 HSP90AB1 LMBRD2 SCD5 DYNLT3 GAD2 TMSB10 RAPGEF5 SOSTDC1 PAFAH1B2 CPLX1 TMEM14A DPP6 RPS15 PHYHIP CAPNS1 CHGB CNTN1 HPRT1 TCEAL7 SCOC QDPR ANKRD20A11P TPPP COX7A2 DIRAS1 MSMO1 PRDM1 RTN3 SULT4A1 SNAP91 SIRPA ELMO1 EIF1 IDS CCDC184 NDRG4 VSNL1 RAB3IP EID1 BAG4 PRKACB CDK5R1 GDI1 FBXO2 UQCR11 MRPS21 HSPBP1 MARCKS PTPRT ATP1A3 PPIA CAP2 THY1 PNMA1 RTN4 HSPB3 ATP2A2 SCAMP5 CHRM2 COX7C SPOCK2 OLFM2 NDUFA4 GOT1 BSG TMTC4 TXN BCAP31 SNX10 GRIK1 FAM219A PITHD1 EDNRA PPP2CB GAPDH TUBA1B MED10 NNAT TSPYL1 YWHAZ SEPW1 PTPRN2 NAP1L3 RP11-20I23.1 SCN3B MT-ND1 CYCS BTNL9 MLLT11 DPYSL2 MYL6B SOD1 EPDR1 VPS35 RND3 WBP2 CLTA PTCHD4 CHL1 PPP2R2C CDH7 WDR47 PPP3CA RAP2A SERPINI1 ARHGDIG NAPB JUND SYT5 NPTN ATP6AP2 RTN1 RPL12 MAF SARAF RNF208 ATP6V1B2 MAP1LC3B RPL36A MTRNR2L12 HDDC2 NBL1 ALDH5A1 PEX5L TOMM20 GRIK3 SUMO2 TAC1 ACTR10 TRHDE BSCL2 ALDOA MTRNR2L6 DNAJC21 TBC1D15\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "SST-expressing interneuron" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MT-CO1 TMSB4X GAD1 ATP1B1 SST MT-CO3 MT-ND4 GRIK1 RPL23A SNAP25 CLU RTN3 MT-ATP6 SLC6A1 NDUFA1 CHN1 SCG2 MT-ND3 ATP6V1C1 KIF1A CNTN1 CALM2 THY1 ITM2C SYT1 HSP90AB1 ATP2B2 MAPK1 MTRNR2L1 MT-CO2 COX6C PRKCB TMA7 PTMA TOMM20 GAP43 GDI1 CLTA NRIP3 NAP1L2 ACTG1 MYL6 PRNP CAP2 NXPH2 SUB1 SPARCL1 CEND1 CALM3 TMEM130 MAP2K4 USMG5 RTN1 TMEM59L YIPF3 VSNL1 H2AFZ RPL31 BEX1 UQCRH SKP1 COX7C FAIM2 PTPRM EIF4A2 TENM3 SPCS2 MGST3 ATP5I MT-ND1 SARAF ITM2B PKM PCDHGA5 TBC1D15 EID1 TMTC1 TCEAL3 ZMAT2 ATP1A3 UQCR11 PTGES3 ATP5C1 PAQR8 PNMA1 UBE2E3 CAPNS1 SOD1 SYT4 DNER TBCA DRAP1 SYTL2 EPB41L3 GAPDH ACTR6 SLC9A6 RPL37A SYNPR C1QBP CADM3 KLHDC3 NDUFA5 PCDH17 RABAC1 OCIAD1 RPS6 TSC22D1 ATP5B LIN7B PPP3CA NDUFB8 MAP7D2 TPI1 FAM84A APP RBX1 DYNLL2 CERS6 NDUFS5 RAB11A TMEM14A BLOC1S1 CD99L2 CDKN2AIPNL SPOCK1 TOMM7 MAP1B NDUFA4 ATP6V0E2 ATXN10 TIMP2 ATP5E RPL26 UBE2D2 KLHL13 CSDE1 SEZ6L2 FTL MAGED1 CYSTM1 YWHAZ TUBB4B LAMTOR5 DCN CD24 TXN KCNH5 EIF1 TMEM51 SPRN PCDH18 ATP5G2 TMSB10 PFDN4 OPCML DNAJC6 KCNAB2 PTPRN2 ARHGAP29 PGM2L1 TSPYL1 PGAM1 PPIA RPS28 ATP2A2 ENOPH1 TMSB4XP4 UHMK1 GCHFR SUMO2 SLC12A5 PSMB7 TERF2IP RPL26L1 PCBP1 THYN1 RPL7 MTRNR2L12 LANCL1 SYT13 APBB1 RPL32 WBSCR17 RHEB KIF5A ATP5G1 IDS PCMT1 OR6D1P ATP1B2 RPS19BP1 RAB6A LMBR1 REPS2 PLD3 MORF4L1 MAF CHGB RAMP1 SNX3 APLP1 ARL2BP EPDR1 DEXI EFR3A NDUFA13 OXR1 ALDOC ZNF574 CAMK2N2 TAC1 RASGRF2 TKT ARL6IP1 EPS15 PGD FAM127A C2ORF80 NDUFB1 ELAVL4 PPA1 AP3S1 GTF3A RAN ATP5F1 RPL13A MAP2K2 NPTN ALDOA SNCA PPP1CB VGF AP1S1 SLC9A1 LPPR4 PHYHIP AK5 ENO1 VSTM2A PNMAL1 TMX4 TPT1 PSMC3 CLSTN1 NDUFB4 BSG SYN2 GRIN3A STX1B NAP1L5 NDUFV1 ARL4C PTPRT BANF1 B3GNT1 ALCAM STMN1 SLIT1 PACSIN1 DCTPP1 PITHD1 TUBB SPTBN1 CTXN1 ARPP19 SNRPN ATP6V1B2 GPM6A TDRD7 NSF RP11-20I23.1 ARF5 RPL41 ATP6V0C BIRC5 GTF2H2C_2 ATP6V1G2 MIF\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "SST-expressing interneuron" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MT-CO1 MT-CO3 SYT1 SNAP25 SST MT-CO2 TSPAN7 MT-ND4 TRHDE ATP1B1 ARL6IP1 PPIA BASP1 MT-ATP6 SYNPR MT-ND2 PJA2 MT-ND3 PGRMC1 TSPYL1 RAB3B YWHAZ RTN3 MT-CYB CALM1 YWHAB TENM1 SEZ6L2 SOD1 GRIN1 ARL4C SLC38A1 WLS HMGCS1 GPM6A PREPL ITM2B GAPDH SCD5 OPA1 GNG2 NAPB SCN3B APLP2 CHN1 CNTN1 PLD3 RTN1 SCD TMOD2 GHITM ZNF385D KLHDC3 RBX1 RP11-632C17__A.1 TERF2IP RAB3C HK1 PHYHIP UBQLN2 TMEM59L TMEM258 NUDT21 GAD1 TCEB2 VAMP2 GLRA3 SLC17A7 SCN1B ARL8B SNAP91 GDI1 PRKCG GPX4 C16ORF13 USP5 TMSB4X RPL32 RPL37A NDUFA4 ARPP19 UCHL1 NDFIP1 SLC6A1 MTRNR2L1 UBE2E3 SLC6A17 SUMO2 CLPTM1 GCH1 GRIN2A DPYSL2 CAB39 MAP1LC3A SNX3 INPP5F EPB41L3 LHX6 HCN1 PNMA2 RPL23A HMGCR OXR1 ACTG1 NDUFB10 MDH1 CDK17 ZFAND5 NDUFA5 MAP4 JAKMIP1 NGFRAP1 SKP1 YWHAG MSMO1 PSMD12 ATP2B2 CREG2 PCMT1 CFL1 SELT ARHGAP29 PLCXD2 PRKACB SNCA MRAP2 COL6A1 ELAVL2 GLRA2 PEG10 STMN4 ARF1 CHL1 KCNC2 NPTXR FBXL16 NDRG2 ELFN1 NCAM2 SEC61G CERS6 CA11 RHEB SPARCL1 DRAP1 PSMD2 GABRG1 RPL21 WBP2 FAIM2 PPDPF GMFB LIMK1 CAMKK2 CKLF VSNL1 CDK5R2 PLCB1 MRPS7 PTMA PPP3CA GOT2 COQ10B RPH3A IMMP1L CAMK2N2 PLCH1 C2ORF47 MLLT11 CFH TUBB2A CAMK2G FGF12 CDH13 FLT3 CTSD SMS NREP TUBB4B MTRNR2L8 RPS27A SIRPA RPL13A STX1A SLC2A1 AK5 SGCZ RPL31 RND3 DNAJB6 INSIG1 COX6B1 CDKN2AIPNL ATP5I LYNX1 ATP5G1 ATP5C1 PGM2L1 PLS3 BCL11B MT-ND1 MAP1B BIRC3 PRKCB DMTN ABHD14A APP TOMM70A GAP43 NCALD MAF CCDC85B PSMD8 EIF4A2 KIF5A RPS3AP23 FXYD6 ACTR1A APLP1 PKM PAM PTPRM RAB6B UBA1 ZNF536 RAN CLIP3 HTR2A MTRNR2L12 GRIK1 RAB3A EIF1B VDAC1 MTX3 LHFPL3 CACNA2D2 RTN4 TMX4 DYNLRB1 SERF2 SERPINE2 RP11-20I23.1 RPL3 ATP6V0C MTRNR2L6 BIRC5 MIF MBOAT7 AC244489.1 TF ARFGAP2\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "SST-expressing interneuron" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: ATP1B1 SNAP25 SPARCL1 GPM6A PRKACB SYT1 PRNP TENM3 CALM2 TRPA1 KIF1A SPOCK3 TIMP2 TUBB2A GRIK1 GAD1 TSPAN7 TF HNRNPA1P40 RNF152 UQCRB DNAJC6 FAM19A2 MT-CO1 SERINC1 BSG MT-CYB CHL1 ARL2BP PPM1A TOMM7 SRP9 TCEAL2 ZFAND5 PGM2L1 SYNPR TOMM20 THOC7 CLU ATP6V1B2 ARL4C FSTL5 MRPL20 PSAP EDIL3 MAPK1 SLC12A5 CLSTN1 MPPED1 SRP14 CALM3 RPL26 ADD2 ATP1A3 MT-CO3 DNM3 PREPL COX5A SNCG PNMAL1 SPHKAP HK1 SCD5 MAP1LC3B NR1I3 CALB1 JUN RAB3C NDUFB1 PRKCE NUPR1L THY1 KLC1 DYNLL1 SARAF PDE1C SYNGR3 MB21D2 SLC38A1 PI4KA RP11-195F19.5 POLR2I CLTC NAP1L5 EXTL2 ELAVL4 SLC8A2 NXPH2 UBQLN2 NCDN UQCRH ACTB SLC32A1 USMG5 GLIPR1 CKB HINT1 CTNND2 ACTR1A LUZP2 CBX6 MORF4L2 CAMK4 PRDX5 PLCB1 SCG2 GPR171 PCBP1 EID1 VWA5A GABRA1 NDUFA4 YWHAB TENM1 VEGFA KCTD12 GPX1 HRK PGRMC1 PEPD MT-CO2 TUBA1B STX1B ATP2A2 MAP2K1 FGF12 ARL6IP5 LMO3 AURKAIP1 SLC9A6 YWHAG ATP6AP2 SUMO3 FAM71E1 TESPA1 SLC22A17 DGUOK ATP6V1A CMAS MAPRE2 STK39 CISD1 SNRPN BRK1 SLC25A4 SCN1A PTMA SNX17 MT-ND1 NEFL MDH1 FAM43A NDRG3 ITM2B NDN FARSA RPL38 PPP3CA CDH8 CAMK2N2 OXR1 PMEPA1 SLC6A1 HS6ST2 TCEB2 MT-ND2 WASF1 BAG4 RTN3 MAPRE3 RCAN2 CYFIP2 CCK MZT2B REEP5 PGD TMSB10 CADM2 YAF2 SCD ATXN10 GOT1 CDC42SE2 COX7C HMP19 POLR2K NGFRAP1 AP2B1 RAB6B CHMP5 ITFG1 PJA2 RAD23B COA4 PKM CD99L2 TSPAN4 FKBP1A NPTXR KLHL5 CTNNA2 SHISA6 STMN1 MT-ATP6 MTRNR2L8 STMN4 LRRC59 SCN3B SERPINI1 CTU2 NDUFA5 MAF FLT3 SYT4 ATP5A1 CSDE1 TUBA1A FBN2 TSC22D1 NRIP3 MZT1 SPARC MAFB PPP2R1A HAPLN4 DNER STXBP1 RPS12 NDUFC1 PENK COPG1 TAGLN3 SPOCK2 MSMO1 CXXC4 THSD7A NDUFA13 NIPA1 HSPA4 ATP1B2 CNRIP1 SST RPL37A IDS SERF2 ARF5 APBB1 MRPS21 NDUFB3 SNX3 CMPK1 MTATP6P1 GPR158 MTRNR2L12 CNTNAP3 MT-ND4L DLD KCNF1 BTBD11 ARL8B KCNAB1 RPL8 ASPDH RTN1 KIF21A WSB2 DKK3 PACSIN1 SCAMP5 TGOLN2 FBXO2 TMEM14A MT2A SYTL2 ZNF385D RAB3B MYO5B RPL7 PSMC1 RP11-20I23.1 MIF NGRN CFH RPL17-C18ORF32 C18ORF32 ATP6V0C RPL18A RPL36A FTH1 AC244489.1 RPL21\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "SST-expressing interneuron" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MT-CO1 MT-ATP6 CADM2 ZNF385D RPL37A SNAP25 MT-CO2 MT-CO3 SUMO2 SPARCL1 EFR3A GNB1 CHN1 RPL32 ATP5J2 TMSB4X MMP24-AS1 MT-ND3 MTRNR2L12 MT-ND1 TUBB2A ARL6IP5 CALM2 TIMP2 APP TMEM14A SYT1 GPM6A MYL6B HNRNPA1P40 MT-CYB SOD1 SERINC1 TUBA1A FBXO2 PPP3CA SCG2 RPL41 VSNL1 PPP2R4 RPL35 RLIM NAP1L5 THY1 SLC39A10 GNG3 NELL2 SCAMP5 GAP43 CALM3 MRPL20 CPE BEX1 SST CLDND2 BRICD5 TSPYL4 MTRNR2L1 NDRG4 GRIK1 IPCEF1 TMEM65 MAPRE3 UBA52 HS6ST3 CHCHD2 PNMA2 MAGED1 NME1 ATP5A1 MTRNR2L8 RNF144B LINC00087 NDUFA13 SCD5 RTN1 TENM1 SERF2 COX6A1 TMOD2 PTMA RELN TMEM147 RPS28 RPS15 SEZ6L2 TSPYL1 HMGCS1 FRMD4B NFE2L1 ATP6V0C OCIAD1 GRIN3A RPS4X SCN3B JUND RPS3A BCL11B FTH1 TOMM22 SPOCK3 NDUFB8 MAGEH1 NEGR1 ARHGDIA CNIH3 WDR47 MT-ND2 NAT8L MTATP6P1 ATP6V1F MAP1B TSC22D1 SNAPC5 RPL23A FIS1 NDUFA1 IFT52 SLC25A5 CKB SYNPR FGF12 NDUFAF2 AP2B1 VAMP1 SYT3 MT-ND4 SNCB RFK RHBDD2 RP11-20I23.1 CDK14 STMN3 NRIP3 CAMK2G ATP2A2 GRIP2 PPP2R2C RPS12 ATP5E PLP1 GABARAPL2 UQCRH ATP6V1G1 MORF4L2 NCALD MMD POLR2I RPL38 PPP1CB PSAP PSMC1 PRKAR1B GPR126 TUBB3 IDS RP11-219A15.1 MIF\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "SST-expressing interneuron" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MT-ND4 MT-CO3 MT-CO1 MT-CO2 MTRNR2L1 SYT1 SST MTRNR2L12 MT-ND2 SERF2 MT-ND1 TMSB4X MT-ATP6 PTMA SPARCL1 TSPYL1 HSP90AA1 CLU PCSK1N ATP1A3 MAFB SNAP25 LMO3 DYNLL1 CAMK2D ATP1B1 CNTN1 TUBA1A TSC22D1 RSL24D1 RTN3 PNMA2 MTRNR2L6 IDS CPLX1 KCNC3 TRMT112 RPL11 PDCD5 SLC7A5 SERP2 STMN4 C12ORF49 MT-ND4L PPP2R2B NPAS3 TUBA1B PRDX1 VSNL1 HTRA1 PSMB5 CMPK1 YWHAB DNER SPCS2 MRPS28 TOMM7 RP11-195F19.5 EPAS1 SLC39A10 KIF5A S100A10 WDR47 ZFAND5 SPOCK2 UQCRFS1 PEA15 MAP4 SUMO2 VEGFA SCAMP5 NGEF QKI COX17 DPP6 HMGCR GRIK3 ELAVL2 RPL7 EPS15 RAB3C CALM3 BEX1 SNRPN KIF1A FGF12 INPP5F SUCLA2 CDH13 MIF PPP2R2C H2AFZ NAP1L3 RPL12 PLCB1 STXBP1 SERINC3 GLUL INA STXBP6 PLD3 LHX6 RCAN2 JUN UBA1 FAIM2 NGFRAP1 FAM96B PRNP UCHL1 MLLT11 SCN1A TMEM35 RBX1 ACTB FASN CADM2 REPS2 OPA1 ACTR1A PDE1C CD24 MT-ND3 CREG2 BSG CALM2 CDH8 OCIAD1 MYO1B HPRT1 JUND C12ORF57 HNRNPH2 SNCG OXR1 MYL12B RTN1 BEX2 NDUFC2 HSD17B14 RPS15 PREPL TSPAN7 ATP1A1 CLTA DYNLL2 FTH1 MTND1P23 COX7A2 DLX1 CRYAB NDRG4 GRIN1 GNB1 CHMP5 VAMP2 RPL32 STMN1 RPS6 WSB2 GNAQ ARX APLP2 ITM2B NPTN CYP26A1 CISD1 ATP6V1G1 RFK RPL15 PNMAL2 CLSTN1 GPM6A RPL36A CALM1 MTRNR2L8 NRGN ALDOC PTPRN2 MT-CYB CTC-575D19.1 SSBP3 YWHAH ATP6V0C GABARAP IFI27 CFH RP11-20I23.1 TF RPL21 PCDHGA6 PCDHGA5 PCDHGA10\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "SST-expressing interneuron" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MTRNR2L1 MT-CO2 MTRNR2L12 CHN1 MT-ND4 GRIK1 MTRNR2L6 RTN1 SST ATP1B1 MTRNR2L8 MT-CO1 CLDN11 VSNL1 NPTXR CREB5 PCDHA4 PLP1 SYT1 TMSB4X ACTB RPL38 MAP7D2 SLC25A22 GPM6A SYNPR PTGDS MT-ND3 ZFAND5 RTN4 MAP2K1 TLN2 ATP6AP1 CKB MAL MZT1 ATP1A3 DGUOK RPL11 UHMK1 LIMK1 RPS15 CALM2 UQCR11 EDIL3 UBA52 RTN3 IDS ATP1B2 TRIM37 PCSK5 PDE1C TM6SF1 EPHB6 ELAVL2 CALM3 SLC22A17 PIK3R1 ARL6IP5 GRM3 NDFIP1 TUBA1A MRPS21 ISCA1 BCAS1 GAPDH TSPYL1 COX7B MLLT11 SKP1 TPT1 COX5A PDCD5 DIRAS2 OCIAD1 RABAC1 TPI1 ITFG1 ZCCHC24 SOD1 SLC25A4 RPL8 ETS2 ZNF536 RPS28 TMSB10 PCSK1N GPR158 VAMP2 PRNP GABARAPL2 PPP2R1A SCD5 TBCB NSDHL TMEM88B NAPB APP SLC9A6 SCN2B MT-CO3 SPOCK2 SHARPIN RPL26 FAM3C KCNIP1 CSDE1 CISD1 VDAC1 PNMA2 UBE2E3 CSRP1 RPL37A UQCRH SALL2 SPOCK3 CALM1 VEGFA TSPAN7 RIN3 NKX6-2 APLP1 SLC6A1 HPCA KCNAB1 DNAJB6 PPP3CB ISCU ESYT1 PLAUR TUBB4A PPP2CB FKBP4 RPL32 PLOD2 ITM2C PTPRT CLU SEPP1 SCN3B PDE9A SNAP25 RPL31 MT2A CHMP4B NAP1L5 FAM84A ATP6V1B2 CA2 OXR1 RAB11A GJA1 DPYSL2 ATP6V0C RAB3B GABARAP RP11-20I23.1 RPL13A HNRNPA1P40 PLEKHD1 AC244489.1\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "SST-expressing interneuron" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: RAB3B HNRNPA1P40 OXR1 SYT1 SST GRIN3A GAD1 SNAP25 FAIM2 GRIK1 CHN1 EIF1AX CALM2 PSAP RTN3 VGF FXYD6 ATP1A1 OCIAD1 MAP1B GPM6A TSPAN7 RPL13 CLTC PRNP RPS27A SYNPR NDUFB2 SLC39A10 NAPB ARL8B MYL6 VSNL1 LANCL1 SEZ6L2 WLS MT-ND3 DPYSL2 RPL17 TUBD1 ACTB DCN TCEAL2 PCDHGA5 TPI1 KCNAB2 ITM2B PRKAR1B NDUFB5 CYFIP2 ATP1B1 RPL41 KIF1A PSMD8 CALM1 SYNGR3 ATP5G1 SPP1 FTH1 ATP6AP1 MT-ND4 GDI1 MT-CO2 PFN2 CAP2 RELN GAPDH SYT17 MPPED1 SKP1 MAPK1 TMSB10 HSP90AB1 RPL37A RPL21 UCHL1 RP11-111M22.2 RPL10A PRKACB GRIK3 VAMP2 NR1I3 NGRN TBC1D15 UBE2M CYB5R3 DIRAS1 ARHGDIG DYNLL1 MOXD1 SCN1A USP5 YWHAB NARS RPH3A PRUNE2 RAB6A ENSA MAP1LC3A COX7A1 KCNK2 TMTC4 SYNGR1 SSBP3 VPS35 TUSC2 ATP5I ACTR1A MAPKAPK2 SEPW1 HINT1 COPS7A GNAQ TMX4 USMG5 MYL6B SHISA6 ATP6V0B STK31 PNMA2 GABARAPL1 RPL8 GRPEL1 MT-CO3 APLP2 TCEAL3 DIRAS3 GSTT1 SLC1A2 NHP2L1 NDUFB1 TIMP2 GDA CPE CIAPIN1 MAST3 KIF5A GAD2 ENO2 CAB39 RPS10 RPL31 RPS15 CRHBP RTN1 PPP3CB PRKCG PI4KA CEND1 QDPR SYNJ1 ATP5J2 DCAF12L2 ATP5H SULT4A1 HSP90AA1 UQCRB RCAN3 WASL WASF1 PTPRM UBB PGM2L1 CADM3 TMA7 PAM NDRG4 EXTL2 TRHDE PPP2R1A COL6A1 REEP5 EIF1 TMSB4X ATP6V0E2 CHL1 SCD5 VWA1 EFHD2 PPP1R9B RPL26 RAPGEF5 NPTN SYT4 ATP6V1F DCC RPL11 BNIP3 SCN3B GRINA PITHD1 THYN1 TOMM20 CLU PHYHIPL NCALD C1ORF52 RPL39 TPT1 CALM3 CPLX2 NPY TRAPPC1 STUB1 VDAC3 CHMP4B TSC22D4 ENO1 UQCRC1 CAMK2G CBX6 PLP1 DPY30 PCDHA4 NDUFB10 CDH22 ATP9A TERF2IP RPS3A H2AFZ HMP19 DMTN ACTR10 SLC12A5 NREP PRKCE RTN4 SLC6A17 OAZ1 ARPP19 AP1S1 DGUOK NME1 RPS5 RPS2 NDUFB8 FBXL16 PREPL FGF12 PDE1A TOX3 NHP2 TEX2 RAB3C LHX6 ARL6IP1 KIF21A ATP6V1E1 HCN1 FTL COPS8 BASP1 PRKCB TPPP ITFG1 STMN2 RPL3 POMP TMEM59L CACNG3 SPTBN1 TUBA1A VCAN ARL6IP5 ATP6V1A ACTR6 NPTXR RPL35 FAM89A NFE2L1 RSPO3 LYSMD2 DYNC1I1 PIK3R1 ATP6AP2 HMGCR UBQLN2 ATP2B2 ASAP1 TUBA1B ALDH5A1 S100A6 ATP5J APLP1 RPL32 SYN2 EGR1 PNKP INSIG1 NDUFA13 BSCL2 ARF5 RP11-20I23.1 ATP6V0C SERF2 GPR78\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "SST-expressing interneuron" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MTRNR2L12 ATP1B1 RAB3IP MTRNR2L1 RELN SYT1 THY1 ROBO2 HSP90AA1 SPARCL1 CFH OPCML DMTN CHN1 ATP1A1 ACTG1 MAF PDE1A RNA5-8SP6 PPP3CB GRM3 MT-ND1 SNAP25 ATP1B2 HSP90AB1 SRP14 CD24 BRK1 GAD1 SCN1B MAPRE2 PRDX5 RSPO3 KCNC2 CNTN1 CRIM1 SARAF MRPL52 RPH3A MOXD1 SCN1A MORF4L2 ITM2B MT-CO1 MAL2 CAMK2G MAP1B SLC7A8 SMIM12 NR2F2 ALDOC SPCS2 SLC25A4 SPOCK3 FAT3 RPL35 POLR2L TSPYL4 RTN3 JOSD2 CALM1 NAPB NPAS3 KLHL5 TAC1 CAMK4 CD99L2 BSG CPLX2 NDUFB10 MT-ND4 HNRNPA1P40 ZNF385D RAB3B SYTL2 TBC1D15 DNAJC21 MTRNR2L6 AC244489.1\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "SST-expressing interneuron" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MT-ND4 MT-CO1 SNAP25 MT-ND2 NCAM2 MT-CO3 TSPAN7 RTN4 PLCB1 TERF2IP NDFIP2 SYT1 GDI1 MT-ND1 ATP6V0B PAM ELAVL4 MT-CYB DPYSL2 SLC9A6 CALM3 CYFIP2 CHN1 RAB6A KRAS SPOCK1 TMSB4X ATP1B1 RTN3 SYT13 STMN4 UBC TLN2 CA11 TUBB4A PENK CLPTM1 WDR47 SLITRK1 CHL1 JAKMIP1 TMSB10 SPON1 SCAMP5 YWHAG MT-ATP6 KIAA1024 RAB3C NPAS3 RAP1GAP2 FAM163B TRHDE PARM1 UCHL1 QKI RTN1 TSPAN33 RLIM DNAJC5 SLC24A2 ARL6IP1 GAPDH WBSCR17 PPP3CA APBB1 RPL35 MORF4L1 PI4KA PSD3 DNAJC6 MT-CO2 SPOCK2 SLC12A5 MTCH1 VAMP2 ARHGAP35 RP11-111M22.2 PKM FAM149B1 GCHFR PEBP1 ATP1A3 IMMP1L YWHAB REEP2 ATP1B2 PNMA2 FAM3C CCDC184 INPP5F SPOCK3 FXYD6 KIFAP3 SNCB NDFIP1 HSP90AB1 MTRNR2L1 PRKCG FAIM2 PCDHA4 PJA2 ATP6V1B2 RAB7A LAP3 PSAP ERBB4 SERPINI1 SYT5 ASAP1 PAFAH1B2 PRNP HSP90AA1 SST SNRPN OPCML CALM1 DNAJA1 MYL12B ATP2B4 SLC6A1 CADM2 ARFGAP2 PREPL PLD3 NPTX1 GRIN2A MAP1A KIAA1211 CLIP3 RPS12 SARAF PTMA SNCAIP ZBTB18 ITM2B RPL15 SUSD4 KCNC2 ARL4C SIRPA BANF1 MAFB PTPRN2 MAP7D2 RPL39 NAPB LSM4 TMCC3 UQCRC2 SMS RPL32 PCDH19 TSPYL1 NCOA4 KIF3C SYN1 TMOD2 SPARCL1 ATP6V0E2 PINK1 CD9 LGI3 FGF12 DKK3 PTPRM TCEB1 RPL6 FBXL16 HSPA8 YWHAZ LPPR4 ACTB RAB3B ZNF385D SYTL2 NGRN ALDOA ARF5 RPL41 RPL26 RNASEK-C17ORF49 TBC1D15 RPL13A PCDHGA5 PCDHGA10 PCDHGA6\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "SST-expressing interneuron" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: ATP1B1 MT-ND4 SST SYT1 MT-CO1 KCNC2 SYNPR MT-CO3 EPHB6 RPL36A MAP4 RPS15 MAF HDDC2 GABARAPL1 OLFM1 MT-CO2 VAMP2 CADM2 CHL1 BEX2 SOX6 CALM1 GRIK1 PAFAH1B2 UBC SNAP25 VSNL1 PREPL RAB3B RPS4X RPL13A RPL31 PLOD2 TF BIRC5 RTN3 SYT11 ACTB PGK1 RANBP1 PCDH19 SLC22A17 NGFRAP1 PPARGC1A PKM MORF4L1 NFE2L1 RPL39 MT-ND1 CHN1 RPL12 RASGRF2 COPS8 NDUFC2 HRH3 HMP19 ACTR1A OXR1 RPS10 TLE4 ATP5I CDC37 KCNAB3 RPL7 FXYD6 MAP1B NRIP3 RAB3IP CLTA NPTXR C1ORF56 ZCCHC12 PLCB1 SNAP91 SELM NTNG2 PDE1C COX6A1 SRP9 MT-ND2 DCTN3 GAD1 ATP5A1 OR6D1P PFKP ATP6V1A SLC6A1 VPS35 DCTN1 RTN4 WFS1 SLC38A1 TMSB10 GAD2 ISCU CLEC2L TGOLN2 SPOCK3 TRIM37 TIMP2 TSPAN7 NDFIP1 PTMA SRP14 MT-ND3 RPS28 MTRNR2L1 TPPP GUK1 ATP1A3 NAP1L3 RPL37A SERPINE2 MT-CYB TMEM130 SNX17 PPP3CA ATP6V1B2 HSP90AB1 SAMM50 GNB1 TMSB4X JUNB AC244489.1 APLP1 NRGN CITED2 REEP2 RAB27B MT-ATP6 KIF5A CTSD DNER YAF2 SERP2 PJA2 CLSTN1 CYCS IDS OAT NCEH1 RPL11 MAFB TUBB4B SPARCL1 CDKN2AIPNL SLCO4A1 RELN SPCS2 TCEB2 ATP6V0B RPL35 RRAGA GAP43 ROBO2 RPL3 AES BASP1 APP COX7C TMTC4 RPL10A COX14 NAT8L RP11-219A15.1 CFH NSF NR1I3 RPL6 ALDOA HNRNPA1P40 TBC1D15\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "SST-expressing interneuron" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: SST GRIK1 MT-CO1 SARAF RTN1 SNAP25 ELAVL2 MAF RTN3 FXYD6 TBC1D15 KLHL5 INSIG1 TMSB4X GPM6A TMEM258 EIF4A2 CAMK2G OPCML OAZ1 SSBP3 EIF1 TUBB2A PSAP FAIM2 PPP2R1A TRHDE RPL36A GRIK3 LL0XNC01-16G2.1 MT-CO3 CDC37 SERINC1 INPP5F CADM2 UCHL1 SYTL2 RAB3B LDHB PTPRN PSMC3 TMA7 BEX4 PLOD2 RPL31 ELAVL4 SLC30A3 RPL38 GDA DNAJA1 C9ORF16 CORO2B PRKACB HSP90AB1 YWHAG MT-CYB TPPP RAB31 APLP2 PEBP1 THY1 LRRIQ3 CLIP2 C19ORF53 ATP6V1E2 TMEM59L PPP3CB RPS4X GRIN3A ARF5 STMN1 SCN3B BSCL2 CTNNB1 EIF1B PSMD12 CREG2 ATP6AP1 RAB3C GAD2 MT3 BEX1 MTRNR2L1 PACSIN1 SYT1 ASB13 BEX2 CKB FBXL16 NGRN MT-CO2 SLC26A10 SERINC3 ATP5G1 CDS1 YWHAQ MANBAL ATP5G2 ROBO2 COX4I1 AP3S1 DYNLL2 BEX5 FAM84A GAP43 ACOT7 ACTG1 STXBP1 PCMT1 ANXA7 ATP1B1 SEPT4 MRFAP1 ATP1A3 APEH SLC25A5 KIF5A PNOC ARL6IP5 SLC7A1 RAB3IP NAPB CNTNAP3 PCBP1 LCNL1 NDUFV1 MT-ATP6 RPS15 ENO2 SYN2 CALM2 PRKAR1B SPARCL1 OXR1 CLU BCAP31 VSNL1 EID1 ATP1A1 GAD1 RHEB RP11-454L9.2 ETFB SPTBN1 ZFAND5 PSMA7 BIRC5 CALB1 RAB6B TERF2IP CALM1 SCD5 ARL4C NRSN2 VAMP2 TOMM7 EPS15 DYNC1I1 SCG2 RTN4 RPL11 CNDP1 ARF1 PPP2CB SLC12A5 DNER NDN NMU STX1A PGRMC1 FAM219A RPL37A NR1I3 PCDH19 MAP1LC3A PKM ARL8A NPTN ITM2B TMSB10 FRMD4B RPS10 PVRL2 NDUFA4 ESYT1 C8ORF4 CNRIP1 PHYHIP GHITM RP11-111M22.2 DPYSL2 NDRG4 CETN2 EGFL7 NMNAT2 RPS2 LMO4 MTCH1 IDS AC244489.1 RPL21 TF\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "SST-expressing interneuron" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MT-ND2 SST MT-CO1 MT-CO3 SYT1 SNAP25 MT-ND1 NPAS3 GPM6A SLC6A1 EIF4A2 FTL MT-ND3 MT-CYB SPARCL1 HSP90AA1 PRKAR1B MT-ND5 PTMA GAD1 CALM1 MT-CO2 TUBA1B CLTC NAP1L3 YWHAH GAPDH SYNPR RAB3C SARAF EDNRA RTN3 PFDN1 RPL31 COX4I1 VDAC1 MT-ND4 NTN4 TRHDE TSPAN7 ATP1B1 TMSB4X STMN2 CALM2 CDH13 FTH1 ESCO2 FAIM2 ROBO2 PRKCG RPL6 GNB1 EFHD2 SLC35B1 UBE2N UQCRB GRIN3A NDUFA13 PRNP EDF1 ENO2 NPTN BEX1 ACTB EPHB6 PIK3R1 CKB PPIA S100A6 PEG10 RAB6B RPL37A MAF ARX GNG3 COX7A2L UBE2QL1 TPT1 LDHB MAFB CEND1 TSPYL1 PPP1CB RTN1 PJA2 ARF1 PPP2R2B OXR1 SERPINI1 FXYD6 CDC37 NDRG4 TSC22D1 CADM2 RPS28 RPL38 IDS SERF2 TUBB3 UBL5 GRIK1 WBP11 STXBP1 TPGS2 BANF1 QKI RPL26 ZCCHC17 RPL13 NDUFC2 CAB39 RPL10A DUSP1 OLA1 TCEB2 SLC24A2 MAP1LC3B RPS15 ATOX1 RPL35 SMIM1 CXXC4 FKBP8 APLP2 EFR3A LAMTOR1 PRIM1 ELMO1 MIF DYNLRB1 BEX4 NELL2 GRIK3 NCALD MORF4L1 KRAS ARPC4 DYNLL1 PRKCB MAPK1 COX6C DIRAS1 COPS7A ITM2C PEBP1 NELL1 CNR1 ATP6V1G1 C2ORF80 MTX3 ARL4C TOX3 THY1 RPL15 PPP2CB SCN1A MARCKS CAP2 SYT13 MTATP6P1 MFN2 MORF4L2 BAD UBC GAP43 TMEM11 RPS4X NXPH3 RP11-195F19.5 GABARAPL2 NDUFA5 CYP26B1 NDUFA4 RAN DIRAS2 RCAN3 PRKAR1A SLC12A5 UQCRQ AP3S1 COX5B CHN1 H2AFZ POMP RPL13A DMKN SNRPN RTN4 CHP1 TUBB2A ATP6V1C1 LANCL1 TCEAL7 GDI1 ABHD14A NCAM2 NGFRAP1 MAP1B GPRC5B CSDE1 CALM3 NAA38 CORO2B RELN ACP1 PRKCE GLUL TIMP2 NDUFB11 SEPW1 PNMA2 TTN ATP5B SYNGR3 RPS27A MGST3 SCN3B MYO1B TUBB4B VSNL1 ATP1A3 PIN1 GPCPD1 NHP2 FAM134A YJEFN3 MAP2K1 STMN3 ARL6IP1 MBOAT7 RP11-697E2.12 MAPRE3 CADM3 SUMO3 FAM89A SMIM13 SOX6 DYNC1I1 RPL32 ATP5E C10ORF10 JUN COA4 ATP5G1 NDUFB8 KLHL5 STXBP6 CCT5 CPE BCKDK GNAQ TCEAL5 SPOCK2 SOD1 NEFL SYT11 JUND SNTB1 COX7A1 HILPDA PGK1 COX6B1 RAB3A ITFG1 NSF RPL39 TPI1 NAP1L2 RANBP1 CLTA CAMK2D ZNF880 SCD5 BASP1 PRUNE2 INA ALDOC PNOC C14ORF132 RPL8 SLC9A6 PKM UCHL1 APP ATP6AP2 ELAVL2 SLC6A17 DYNLT3 DLX1 C19ORF53 USP5 DPYSL2 CLSTN1 THOC7 EIF1AX ZFAND5 NDUFB2 SERINC1 PRDX3 TMA7 SYN2 PRKACB RAP2A RASGRF2 RPL11 GADD45GIP1 C9ORF16 SUB1 MAGEH1 FAT3 EID1 MT-ATP6 CAPZA2 UBB PACSIN1 FIBP RPL23A OCIAD1 DCLK1 PREPL ENC1 SYTL2 RAB3B ZNF385D HNRNPA1P40 GABARAP C19ORF33 AC011043.1 DNAJC21 TBC1D15 ATP6V1G2 RPL21 TUBB RPL7 CYB5R3 CFH\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "SST-expressing interneuron" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MT-CO2 MT-CO3 RAB3B SNAP25 MT-CO1 MT-ND2 PREPL SPARCL1 MT-ND4 RPL32 RELN TMEM130 TSPAN7 GAD1 ATP6V1B2 RTN4 TRHDE PCDH15 RTN1 RPS15 YWHAB ITM2B MRAS OXR1 IDS EFR3A RPL13A CTNNA2 SYT13 CNTN1 PLCB1 PPP3CB FXYD6 TMEM59L MARCKS RTN3 PSAP UCHL1 CLSTN1 SLC12A5 ACTB PNMA2 ELAVL2 MT-ATP6 SCN1A APP DNER GPM6A PIK3R1 GAPDH TBC1D15 PSMC3 PITPNA ATP6AP1 CDH8 TIMP2 NFE2L1 PTPRN CACNB1 CNR1 BCL11B CACNG3 PRKCB TSPYL5 RPS5 PCSK1N DPY19L1 RPL39 TMSB10 UQCRH ISCU FKBP4 SUMO2 PPP2R1A OLA1 STXBP1 DMTN TCEAL2 SYNGR1 PKM FKBP8 SYT1 ATP1B2 NARS STUB1 DCC NAP1L5 ZNF503 YWHAQ TUBA1A KCNC2 HMP19 PCDH8 ENO1 RPS6 RAB31 KIF5A MAPRE3 ATP1A1 EIF1 RPL38 KIF1A RPL37A RPL17 HMGCR MT-ND4L MAP2K4 RAB6A RPL36A RPS28 GAPDHP33 RPL8 AURKAIP1 CALM3 RPL12 NREP ATP6V1A CXXC4 PACSIN1 PAFAH1B2 TOMM7 NUDT21 NELL2 VAMP2 EIF4G2 TSPYL1 UQCRQ SPATA13 POMP TUBB2B NRGN CYFIP2 MT-ND3 RAB4A COA3 PLD3 APLP2 BSN C11ORF31 TPD52 ATP2B2 MARCKSL1 GSTP1 NAP1L3 ACTR6 CTBP1 DRAP1 SEPT4 RP11-111M22.2 VAPB SYT11 PARM1 RCAN3 ATP6V1C1 TRIM37 STMN1 RPL13 RP1-152L7.5 LMO4 ELMO1 PNMAL1 RPS27A PTGES3 SLC6A1 PRKCG MYL12B PPP3CA TGOLN2 OR6D1P NGFRAP1 HSP90AB1 UBC SLC1A3 CHL1 TUBB2A TBCA TCEAL7 ENOPH1 BEX1 PLCH1 MAPRE2 COX8A ENO2 KIF21A NDUFA11 RPL17-C18ORF32 CREG2 DPYSL2 SEPW1 NAPA NCALD CKB RAB3C C19ORF70 PHPT1 RPL11 APLP1 RPL6 EFHD2 C14ORF2 SNX10 ARHGAP35 SUB1 SLC25A6 SERINC1 MTRNR2L12 FAM43A CCK C1D STXBP6 COX7C RHEB NHP2L1 YWHAG SLC25A5 TMA7 PRNP CALM2 PCDH18 OPA1 ATP9A PPP2R2B NEFL FAM43B NDUFB4 CAPZB VDAC1 UBE2L6 EDNRA TF ALDOA CKLF MAP1LC3B RP11-20I23.1 ATP6V0C RNASEK-C17ORF49 EPHB6 RPS3A RPL41 SYTL2\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "SST-expressing interneuron" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MT-ND3 MT-CO3 MT-CO1 MT-CYB MT-ND2 MT-CO2 MT-ATP6 MT-ND1 MT-ND4 SYT1 HSP90AA1 MTRNR2L12 CDH13 SNAP25 VAMP2 MAP1B CHN1 TBC1D15 CADM2 SPOCK3 GPM6A CLIP3 SYNPR CSDE1 SPOCK1 MT-ND4L SPARCL1 TRHDE RTN4 RAB6A SERPINI1 GREM2 ENO2 RAB3B CREG2 ATP1B1 ATP6AP2 STXBP1 TMA7 LRP1B TMEM200C PPIA ATP6AP1 SLC24A2 COX6A1 MTATP6P1 CITED2 INA RAB3C TMIGD2 FXYD6 SERINC1 PREPL NFE2L1 ARX TSPYL1 CNTN1 EPHB6 RTN1 MTRNR2L1 SLC12A5 PSMD2 GAD2 SARAF TOMM20 OXR1 MTCH1 NHP2L1 CLSTN1 RAP1GDS1 REEP5 PLCB1 TMSB4X SPARC CALM2 IDS HINT1 TUBB3 EPHA6 EFR3A APP DNAJC6 MAP2K4 PRPS1 KCNC2 GAD1 CALM1 RTN3 BIRC5 CFH SYTL2 NR1I3 RPL12 RPL6 STMN2 UBE2M SRM CNTNAP5 GRIN1 ARL6IP5 UBA52 TMEM65 FAIM2 MDH1 GABRG1 TOMM22 FXYD7 YWHAG RP11-111M22.2 ATP5G3 MAPRE2 BRINP3 ZNF174 COX8A SLC6A17 MRPL47 RAB3A ITM2B SCN1A SNX3 CD59 NDRG4 SST PNMAL1 GNG2 NDUFA8 PFDN1 VPS35 ATP1B2 UQCRFS1 ROBO2 RRAGA ENO1 UCHL1 FABP5 SKP1 POLR2K MARCKSL1 TRMT112 ATP1A1 ATP6V1B2 NBL1 TMEM150C LHFPL3 CMAS SKAP2 GNAQ DKK2 ELMO1 INSIG1 RNA5-8SP6 SOD1 SELM ARF3 PCDH17 NDFIP1 KCNAB2 ATP5F1 DCN WSB2 TSPAN7 NAP1L2 DPYSL2 ATP5G2 FSTL5 C19ORF70 RPL13 SCN3B BCAP31 TUBB4A RAB3IP KIF1A WARS CDK5 ASCL1 PGRMC1 PDZD11 ARL4C TPRG1L ATP5J TMEM230 PEG10 ELAVL2 CYCS RPL35 APBB1 MAF CDK17 CALM3 ALDOC PTPRM SPTBN1 MGST3 PGK1 COX5B TUBA1A ACTG1 NAP1L3 TIMP2 IQSEC1 BASP1 AZIN1 CNP STK24 ATP6V0E2 NPAS3 QKI RPL15 DIRAS1 ATP5A1 CX3CL1 FAM84A VSNL1 NAP1L5 VSTM2L NTHL1 PAK1 ATP2A2 WASL PRNP LOX MTND2P28 ACTB MAFB DPP6 RPL32 ATP6V1E2 HNRNPH2 PFN2 TMEM117 NCDN GRINA DKK3 ATP6V1G1 SNRPN PTMA NTN4 STMN4 LMBRD2 RPL37A HSP90AB1 OR6D1P MTRNR2L8 HPRT1 ELOVL7 FTH1 GHITM PIN1 DSTN ITFG1 SOX2 STUB1 RAB11A KLC1 CYFIP2 MAP7D1 PSAP PAM SYNPO CAB39 FSCN1 SYN1 GRIN3A SLC17A8 LIN7B DDAH1 TUBB2A CA11 SUB1 TMEM59L LYNX1 POLR2I RPL41 PIEZO2 RAB1A ARL6IP1 CAPNS1 SLC6A1 PPP2R2B TMEM35 RGS12 ATP6V0C NDUFC2 MTRNR2L6 UQCRC2 RP11-20I23.1 ATP6V1G2 CYB5R3 PCDHA9 PCDHAC1 PCDHA10 PCDHA4\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "SST-expressing interneuron" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: NPY RAB3B SST CORT SNAP25 TBC1D15 NOS1 RPL32 ATP1B1 RPL38 CTBP1 ELAVL2 GRIK1 CALM2 FAIM2 RPL31 TMSB10 RPL13 CRHBP ATP1A1 RPL15 GAPDH SYT1 MAP1B ZNF385D NDUFA1 SPOCK2 PTMA RPL41 NGFRAP1 DHCR24 ATP9A DSTN EIF4A2 ARPP19 CLDND2 UBQLN2 CHN1 ACTG1 DNAJB6 CPE GUCY1A3 HSP90AB1 RPL35 GDI1 RAB3IP SKP1 FAM43A EPB41L3 ATP6V0D1 GPM6A RPS15 ITM2B HMGCR MT-CO1 PCDHGA6 SCOC TMSB4X EPHB6 MORF4L1 TMX4 SOX2 FSCN1 KLC1 RPL17 RPL17-C18ORF32 IDS SNCA ANKRD34B TSPAN7 GHITM REPS2 SERPINI1 PGRMC1 EPS15 KIF21A VGF MLLT11 ARHGAP35 UQCRB UTRN VPS35 TSC22D1 GNG3 ENO2 MPC2 YWHAB PGM2L1 C12ORF57 SOX6 TUBB4B SPARC NDUFB2 SYT4 MT-ATP6 BEX4 OR6D1P CHMP4B MSMO1 PDE1C TMEM14A SELT BCL11B RPS6 HEY1 AP2M1 GTF3A COPG1 NPY2R TENM1 RELL2 RHBDD2 THOC7 AK5 PTPRS STMN2 COL24A1 MAP7D1 NAP1L5 MAFB VSTM2A SLC9A6 ATP2A2 ARL6IP1 ATXN10 PSAP UHMK1 LHX6 C19ORF70 PTPRM SCN1A MAP7D2 TMA7 EDF1 RPL39 NDUFB5 TMOD2 SYN1 ALDOC TERF2IP PPIA THY1 FBXW11 TGOLN2 CYCS RPS4X RPL7 PSMC1 GUCY1B3 APLF RPL26 NDRG4 NDFIP2 TUBA1A BEX2 APP PDZD11 C14ORF2 TPGS2 CADM2 UQCRQ ZFAND5 NUP37 ATP5J2 FAM174A SMIM12 OPCML RFK DPYSL2 TMEM130 TSPYL4 CREG2 NXPH2 RPS28 BCAT1 ADORA1 RPL3 EID1 ASAP1 UBE2L6 MTHFS CISD1 RSPO3 INPP5F RTN1 HSP90AA1 CLU PET100 GRIN1 ATP5F1 GABRG1 KCNK1 FASN PPP1CB SARAF ATP5G2 MAP1LC3A SYT3 NUAK1 ACTB CHRNA6 MGST3 PSD3 SYN2 LAMTOR1 PCSK1N MRAS BRICD5 OCIAD1 PRKCG CDK5R2 FAT3 ATP6V1A ISCU UBC DCTN1 TRMT112 SPOCK1 RTN4 PEBP1 TBCB ATP5E POMP FRMPD2 SLC38A1 HILPDA GNAQ RNF11 FTH1 RHEB PAFAH1B2 PCBP1 RPS12 SYNJ1 CAPZA2 TENM3 C1ORF56 FNDC4 OLFM1 UBA1 GABARAPL1 MRPL12 MOBP GPR88 SCAND1 RTN3 ATP5B SULF2 NDRG3 ESCO2 RPL36A SERF2 RP11-20I23.1 ATP6V0C BSCL2 NGRN MIF RPS3A AC244489.1 BIRC5\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "SST-expressing interneuron" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: SST SYT1 RPL35 RAB3B MT-CO1 RPS28 SNAP25 HSP90AA1 MT-CO3 RPL39 MTRNR2L12 ELAVL2 STXBP1 EIF1 TMSB4X RPL21 NRCAM SYT4 PPIA THY1 RPL36A SERINC1 GRIK1 GPM6A PEBP1 SERF2 SLC6A1 RPS12 PRKCG SCAMP5 RPS10 SLC12A5 UQCRQ MTRNR2L1 NEGR1 TMEM130 TMSB10 CTBP1 GAD1 ATP9A MT-ND3 CHCHD2 FAIM2 YWHAG CNTN1 ATP1B1 RPL11 HSP90AB1 CALM3 DCLK1 JUND DYNLL1 CHL1 TUBA1B SPOCK2 RELN PRNP MT-ND4 EPHB6 RHEB FTH1 WLS NGFRAP1 ELFN1 PEG10 LHX6 CORT SPARCL1 RPS27A MT-ND1 ITM2C CALM2 KIF1A TF ARFGAP2 SPOCK3 PSMA7 PEA15 ALCAM ADAMTS6 GABARAPL2 KLC1 CD99L2 MTX3 GUCY1B3 RP11-195F19.5 RAB7A SELM DNM3 BNIP3 ATP1A3 NDUFB2 VDAC2 SNRNP25 CACNA2D2 PSMC5 TRIM36 C14ORF2 MAPK1 ANXA6 PPP3R1 DYNLT3 RPL32 SARAF NCDN MAGED2 TMTC4 RTN4 MT-CO2 PARM1 FXYD6 POMP EIF4A2 ASPDH TSPAN7 TMEM14A NAP1L3 SYNPR CTSD RP11-111M22.2 GNG3 CADM3 CDK5R2 DKK3 DLX1 MAPK8IP2 UROS CYP26A1 HSD17B14 CTNNB1 NDUFA12 TAC3 NDFIP1 STMN4 TMTC1 DNAJC5 ATP6V1B2 OXR1 BEX2 RPS2P45 ARPP19 CHN1 MAPRE2 CYC1 UBE2N HSPA8 RPL17 LPPR4 BCAP31 STMN1 SLC24A2 RGS12 CMAS DMTN CORO2B NFE2L1 C1D SKP1 RPL7 INSIG1 DNAJC6 CD63 SNCA STX1B RPS26 MBP TPT1 GPRC5B EDIL3 NDUFA4 NDUFA8 GRIK3 RTN3 NDUFS5 ACOT7 RPL38 TSPYL4 MTCH1 HINT1 PPIH SLC35B1 MAP1B RGS4 JAKMIP1 PTPRM NDUFB1 UHMK1 PRPS1 ITM2A ISCU PPP2CB RPS3A ATP5E SLC24A3 PINK1 GJD2 ANAPC11 MIR6723 ATP6V0B INPP5F NHP2L1 D4S234E RTN1 ENOPH1 TMEM35 KLHL12 HMP19 RAB4A SPTBN1 ATRN ARPC4 MORF4L2 CRYAB CADM2 ALDH1A3 SAP18 BSG BASP1 APP TMEM65 ATP2A2 COX7C PCP4L1 TMA7 NXPH3 ATP1A1 TXN CDH22 NPY AP2M1 PRDX3 OLFM1 NDUFA2 MTRNR2L8 NHP2 MRFAP1 FSCN1 NRIP3 TLE4 PSAP KLHDC3 RPL18A MRPL51 C19ORF10 RPS4X TPI1 SPAG17 SNRPN STMN3 TMOD2 SRP14 NPAS3 TMEM258 BEX5 ZFAND5 COA3 USMG5 STXBP6 VPS35 OAZ1 CA11 PDE1A IRS4 HPS6 ATP6V1G1 MRPS21 AES ATP6V1F GPX4 EEF1A2 RPL41 SLC1A2 CXXC4 RPS6 MPC2 AIMP2 CALM1 UQCR11 HSPA4 COL25A1 CYFIP2 CISD1 NBL1 VSTM2L CNTNAP3 TRHDE B3GNT1 DYNLRB1 RPS15 MIF ESCO2 ATP6V0C BSCL2 RNASEK-C17ORF49 IDS MTRNR2L6 RP11-20I23.1 GTF2H2C_2 PCDHA4 PCDHA9 PCDHA10 PCDHAC1 SYTL2\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "SST-expressing interneuron" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MT-CO1 RAB3B MT-ND4 MT-CYB MT-CO3 MT-ND3 SYT11 SST SYT1 DKK3 ARL8B SLC22A17 CD63 RPL37A MAF RPL41 CPLX2 DRAP1 SCN3B BCAP31 COX7C CPE SPCS2 NEFH ATP1B1 CYP26A1 RTN3 EFR3A CADM2 NGFRAP1 UBE2M ARL6IP5 KCNC2 MT-CO2 ITM2B RPL35 MT-ND2 SYTL2 NR1I3 RPL6 NUAK1 RABAC1 NOS1 TTN CPNE2 AURKAIP1 RPL36A RPS28 ATPAF1 MTRNR2L8 SLC24A2 SKAP2 AK5 GDI1 SRP14 RPL8 TSPAN7 CLU COX4I1 PRNP PREPL KCNA2 TMEM141 PLD3 APLP1 CLTA ENO2 TUBB4B PDP1 YWHAH SRP9 PDCD5 COX7A2 KCNA3 PKM RPS15 TMSB4X CDKN2D NCOA4 GPM6A CDK14 CLTC RPL32 REEP5 LGI3 LYSMD2 PRKAR1A SYT4 BSN MTRNR2L12 DUSP1 RPL18A NRCAM NPTN GRIK1 ATP6V0B CAMKK2 GLRA3 SARAF SUMO2 OXR1 BCL11B YWHAZ TMEM35 IQSEC1 RPS3A SOD1 CRHBP AES VSNL1 MT-ATP6 STMN4 RPL10A DYNLL2 WSB2 CHL1 RCAN2 POMP SEPW1 ATP5H MRPL52 AP3S1 FXYD6 GOT1 SLC39A10 SUB1 WASF1 UBB PITHD1 RAP1GDS1 PAM PGAM1 SPARCL1 VSTM2L COL9A1 SPOCK3 RAB3A PSMC5 NDFIP1 ATP5E YWHAG DNER CDK5R2 NAT8L VAX1 LL0XNC01-16G2.1 TUBA1B KLHL5 RHOA NDUFA8 ATP1A1 FKBP4 SMIM12 PTGES3 ARF3 HMP19 PNMA1 ALDOC ERH SNRPN ARF1 COL21A1 RAB34 NHP2 MORF4L1 RP11-20I23.1 ATP6V0C ALDOA B2M SERF2 AC244489.1 PCDHGA5 PCDHGA10 PCDHGA6\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "SST-expressing interneuron" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: RAB3B SNAP25 GPM6A SYT1 ZNF385D DNAJB6 CADM2 VAMP2 RPL21 GDI1 RTN4 CDH13 RPL37A NGRN SYNPR PRKACB CALM1 UCHL1 RPL36A C18ORF32 HNRNPA1P40 TSPYL4 FXYD6 DPYSL2 SLC24A2 RAB4A CNTN1 PIK3R1 SPARCL1 TMSB10 DPP6 INPP5F RPL3 BRK1 WLS KLC1 MORF4L1 TCEB2 MARCKS NOP10 SUMO2 B3GNT1 ATP5I CSDE1 ATP5E SERPINI1 SYT11 HSP90AA1 ATP2A2 PLCB1 UBL5 UQCRH SNCG PTPRM HTRA1 MT-CO1 PPP2CB MT-CO3 AES BEX1 TUBA1B SERINC3 HSP90AB1 RTN3 STXBP6 RP11-111M22.2 EPHA6 GNG3 CLSTN1 TRHDE GRINA FAT3 ENO2 RPL41 RPL13A EFR3A RPL17 OR6D1P NR1I3 SLC22A17 TSPAN7 NEFH PGRMC1 MAPRE2 TMEM164 GNB1 UQCR11 ABHD8 UROS C19ORF53 NMU VSNL1 SLC6A1 MAGED1 PCYT2 TOLLIP PEBP1 SYNGR3 RPS6 SULT4A1 PPP3CA PPP1CB PPP3CB MT-ATP6 SNAP91 C2ORF80 INSIG1 FKBP1A CHN1 PREPL BRICD5 RPL26 SEPW1 OPCML CLTA GHITM TPGS2 OST4 MAL2 PRKCG NFE2L1 SCN3B LZTS1 SLC1A2 UBE2M PJA2 DPY30 APP RPL12 SYN2 PPP2R2B ATP5J2 TMEM258 CTNND2 ALDH5A1 NRIP3 IFI6 GUK1 SLC40A1 TMSB4X TMA7 CDC42SE2 PRDX2 PLS3 PTPRS TMEM65 SLITRK1 YWHAH CDH8 FLOT2 VDAC1 GOT2 PCP4 IGFBP6 PSMD2 EPB41L3 KCNIP1 DCTN1 MRPL20 CPLX1 FTH1 ACTB SEPT4 ACTG1 NXPH1 NDUFB8 ARL6IP1 LAMTOR1 CAP2 TUBB4B CHL1 CPE FRZB RAB40B TMEM35 PRKCB VSTM2L CYFIP2 NRGN SARAF PARM1 DLD SPOCK2 FKBP8 POLR2I YWHAQ ALDOC PTPRT THY1 ATP6V1F ITM2B SKP1 NDUFA5 STMN1 C11ORF31 LANCL1 ATP6V0E2 DKK3 FAM84A PAFAH1B2 CALM3 PNKD ATP1B1 TSC22D1 GPX4 COX4I1 TERF2IP AURKAIP1 YWHAG ARPP19 NECAB1 FIGN CLIP3 BEX4 C14ORF2 PKM ATP6V0D1 SNCB CRIP2 STMN3 KIF1A NDUFS5 TMX4 BSCL2 SLC17A8 MRPS21 RHOA COX7A2L ELAVL4 COX6B1 ATP1A3 ATP2B2 HSPA8 ATP6AP2 FNDC4 COX7B MAPK1 RPS28 PGM2L1 UQCRC1 PNMA2 RRM2B NDUFA4 PSAP PDP1 OXR1 NPAS3 GNG2 SERINC1 DLX6 RPL11 PEA15 PIN1 PGAM1 LL0XNC01-16G2.1 SNN DPY19L1 MT-CO2 COX5B NAP1L5 GABARAPL1 NDUFA1 RPS15 SLC8A2 KIF21A NAP1L2 KIF5A ISCU PAM MTRNR2L12 COX14 MTRNR2L1 SPCS2 EIF4A2 TCEB1 SLC25A11 IQCK RPL10A GABARAPL2 RPL32 TMEM130 CREB3L3 SST HK1 ATP6V0C RP11-219A15.1 RP11-20I23.1 SERF2 RNASEK-C17ORF49 PCDHGA6 PCDHGA5 PCDHGA10 RPL17-C18ORF32\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "SST-expressing interneuron" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MT-CO1 MT-CO3 MT-ATP6 MT-CO2 MTRNR2L12 MT-ND2 MT-ND1 MT-CYB SST MT-ND4 MTRNR2L1 SNAP25 MT-ND3 MTRNR2L8 RAB3B MAP1B SYT1 TBC1D15 MT-ND5 GAD1 SLC9A6 GRIK1 SERINC1 ALCAM SPOCK3 CFH MTATP6P1 KCNC2 EFR3A TRHDE CPE FAM84A APP RTN4 SCAMP5 PTPRN SYT11 SYNPR TMSB4X FLT3 MTRNR2L6 PEBP1 CADM3 GRIN1 PSD3 CBLN4 RAB3IP VSTM2L PJA2 DNAJC6 PLCB1 CHL1 PAM RPL35 TMX4 ATP5E COL6A4P2 CALM2 ATP5O STXBP6 CDK14 SNRPE SPARCL1 SERINC3 SCN3B PKM NPAS3 SOX2 SPOCK1 GAD2 TMEM59L TUBA1A OLFM2 DPYSL2 KIF1A RAB6A ARL6IP5 THY1 MT-ND4L OCIAD1 NRCAM MYL6B NAP1L3 TSPYL4 BIRC5 CKB MGST3 YWHAG ITFG1 KCNAB2 PRKCG CALM3 GPM6A RPL37A RNF11 KLHL5 PRKACB HSP90AA1 ISCU SERPINI1 OXR1 TENM3 CLSTN1 HMP19 OR6D1P TF PTMA INPP5F NAPB FBXL16 TCEA2 ATP5B TPI1 NCAM2 KIF21A PEG10 WLS FTL NCALD DLX1 RPS28 LRFN3 PAFAH1B2 TCEAL2 FAM96B RASGRF2 ARL6IP1 SYN2 ITM2C HSP90AB1 CBX6 ARF1 PIK3R1 RAB40B MIEN1 ARL8B HIST1H1E POMP HDDC2 HINT1 RHEB ATP5G1 RPS3A RILPL2 ATP6AP1 SNRPN SCD5 BASP1 ATP6V1C1 IDS NAPA NUDT21 CREG2 YWHAQ CALM1 CORO1B PCSK1N TOMM20 NIPA1 SUB1 USMG5 SRD5A1 LAMTOR5 ACTB WBP2 ATP1B2 AP2B1 MAP1A PRKCB CYFIP2 SPCS2 IGSF21 TERF2IP KCNA2 RAB3C TIGD4 LINC00116 RP11-111M22.2 SSTR2 BCAT1 FAIM2 HNRNPH2 CADM2 RPL6 CACNA2D2 ZNF343 ACTG1 NSF TMSB10 PRDM1 NDRG4 RGS4 RNF144B VAMP2 SPOCK2 ITM2B PPP2R2C NDUFA5 OAT SEZ6L2 EIF1AX RAB6B CHMP4B PIP5K1B RP11-98D18.7 ARF5 TMEM120A D4S234E ATP2B2 RAP2A CHCHD2 ARX KLHDC3 YWHAB ATP6V0B PDP1 PPP3CA ELAVL2 SKP1 ATOX1 YAF2 KCNIP1 NRIP3 ATP6V1A SARAF PRKAR1A ACLY PCBP1 WASL PTPRM TCEAL5 COX5B CHP1 FGF12 PTPRT B3GALT2 CLIP2 TPPP LGI2 SCN1A NDUFV1 C4ORF3 PCDHB10 SLC32A1 RTN3 FTH1 AP2M1 ENO1 RPL38 KLC1 PREPL KIF5A TUBA1B GRIK3 DNAJC5 PPP2CA STXBP1 RELN RPL13 PPM1A TUBB4A PRKCE ARHGDIA PEX5L ATP1B1 DPP6 TOMM70A BEX1 PPP3R1 PRKAR1B UQCRB TOLLIP ATP5J2 UCHL1 SELT MTPN NREP RCAN2 RPL31 GTF3A ARL1 PPP1CB CDK5R1 PHYHIPL BAI2 BEND4 NPTN DNER RPL10A NDUFC2 COX6C MAP1LC3A REPS2 MRFAP1 PFKP EIF4A2 GRIN3A LMO4 CHN1 TM2D3 C1ORF95 PPP2R1A ZNF365 PTCHD4 GABARAP RPL26 TUBD1 RPL13A RPL21 RPL36A RPL7 RPL17 RPL17-C18ORF32 AC244489.1 CYB5R3 PCDHAC1 PCDHA9 PCDHA10 PCDHA4\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "SST-expressing interneuron" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: SNAP25 SYT1 GRIN1 RPL38 MT-CO2 RTN3 ARL6IP5 MT-CO1 FAIM2 TRIM37 ELAVL2 EIF4A2 ROBO2 NEFL VAMP1 VSTM2A GDI1 MT-ND3 GAD1 ARPP19 NPTN MAP1B HMGCR PSD3 ATP2A2 SPCS2 PRKCG MTRNR2L12 RAB6B YWHAG RTDR1 RHOA YWHAQ NPAS3 SLC6A1 CPNE4 SYN1 VDAC3 PRKAR1B CTNND2 RPL35 INSIG1 SGCD JUND CCDC74A VSNL1 DSTN MLLT11 SPOCK3 PKM MTRNR2L8 RBX1 HMP19 MYRIP TMEM65 PREPL ATP2B2 D4S234E PGRMC1 ADD2 PLD3 SERINC1 DRAP1 MT-ND4 VSTM2L RPS27A MAP7D1 RAD23B ATP9A BEX2 SEZ6L2 SLC25A6 SLIT1 PPP2R1A FGF12 BNIP3 STMN4 DPP6 HSP90AB1 CISD1 EDF1 ATP1A1 FAM19A2 HSP90AA1 RAB3B EFHD2 TIMP3 KLHL5 RPL15 C16ORF13 TIMP2 GNG3 KIFAP3 MT-CO3 ATP1B1 FTH1 RPS28 TMTC1 SRP14 NDUFC2 GUCY1B3 UQCRH NXPH3 TUBB4B MYL6B FAM96B SALL2 MMD MAGEH1 PSMB7 F8 C12ORF57 RPL13 GABARAPL1 WLS MT-CYB GAP43 DCN RPS15 CD59 COX5A PRKACB TMX4 PRNP ARF3 PRPS1 SLC10A4 MDH2 MTATP6P1 USP5 GRIN3A SERF2 DYNLRB1 SCD5 FAM84A FABP5 TSPYL1 COX6A1 PITHD1 ITM2B PGAM1 ATP6V0B SLC17A6 SKP1 SCN1A RNF208 UBQLN2 RTN4 CALM2 DCLK1 SST NDRG4 MRFAP1 TRHDE ENO1 COX4I1 ALDOA KIAA1024 ISCU NFE2L1 SULT4A1 PPP3CA SARAF NDRG3 SCAMP5 SOX6 DNER TOLLIP TPT1 HN1 EGFL7 RPL21 ATP6V0C NGRN RP11-20I23.1 TUBD1\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "SST-expressing interneuron" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: SNAP25 MTRNR2L1 MT-CO3 SYT1 SLC6A1 MT-ND4 CCK MTRNR2L12 MT-CO2 SYTL2 RTN4 MT-CO1 GAD1 TSPYL1 ESCO2 KIT HAPLN1 GAD2 KIF21A SARAF MORF4L2 TMSB4X CLTC PREPL NDUFB1 MT-CYB GRIP2 MT-ATP6 EYA4 APLP2 KCNC2 MT-ND3 NFIA NXPH1 B3GALT2 MDGA1 CALM1 PTCHD4 HK1 GRIN2A VPS35 MTRNR2L6 GORASP2 ZBTB20 CAMK2G PEBP1 ATP6V1F RAB3IP RPL17-C18ORF32 MT-ND5 TRPC3 ARL6IP1 SERPINI1 C8ORF4 SCN1A CLU SLC24A2 PRDX5 HSP90AB1 CXCL14 KIF5A SLC9A6 RTN3 TUBB2A PJA2 RASGRF2 RPL3 KCNAB1 UCHL1 RAB6B HSP90AA1 PCDHGA5 MT-ND2 CPLX2 RGS12 CDK14 PNMA2 EGFR CNTN1 SYNPR SV2C NMNAT2 RPL32 APP TMOD2 TMEM59L BIRC5 ARFGAP2 UQCR11 COX8A UQCRB UBC SPRYD3 MFSD6 SNAP91 FGF12 SEZ6L GLO1 CADM3 SDCBP ZNF365 SEZ6L2 PAFAH1B2 BAD ABRACL GUCY1B3 MTATP6P1 CEND1 NDFIP1 WBSCR17 DNAJA1 NEGR1 VCAN NDN CHN1 NDUFA4 NAT8L DYNLL2 DGUOK GAP43 PRDX2 ITM2C PPM1A RPL13 HRH3 RPL41 DYNLT3 RTN1 TP53I11 GNB1 MAP1A EDF1 ARF3 COX7C ATP6V1A VDAC3 MLLT11 SLC6A17 MIEN1 SH3BGRL2 MLF2 EIF4A2 OCIAD1 CSDE1 SSTR2 USMG5 VSTM2L ATRN UBQLN2 CDK5R1 ACTR6 HSPA8 RRS1 COL9A2 BCAT1 FAT1 TOMM70A TSPAN7 GPM6A SLC7A8 DPY19L1 SYN2 ELAVL2 SYT4 SYNGR3 ARHGAP29 EXTL2 FXYD6 DNAJC6 ATP6V0C OXR1 ITGA6 KCNA2 VWA5A TOMM7 IQSEC1 KLC2 DLX6 PLD3 SP9 TRIM37 CDS1 GDI1 D4S234E SPCS2 GABRA1 SLC12A5 TGOLN2 DPP6 NPTXR CST3 FSTL5 METTL7A NECAB1 ZNF101P2 ERBB4 PCBP1 PRKACB APLP1 SCD5 RHOB GRINA RP11-20I23.1 FAM131B RPL13A SYT13 SOX2 KRT17 PRKAR1A TNFAIP8L3 ACSS1 RAB11A CAB39 SLC22A17 ATP6V1B2 SEMA4G BSN GUCY1A3 MAP1B BLOC1S1 MT-ND1 FAIM2 PKM MAP2K4 MYO16 CYFIP2 BCL11B NDUFA1 FTH1 BSG AZIN1 PNKP USP5 PRNP MARCKSL1 CLSTN1 PTMA GPR98 ARL4C UHMK1 NDRG4 SPP1 PNMAL2 NAA38 COX6B1 TDRD7 STMN3 TMEM65 CD24 SYT11 C7ORF50 CFL2 AP3S1 DPYSL2 VDAC1 NDUFB11 PRKCB NXPH2 LANCL1 SSBP3 LMBRD2 SPOCK2 TSC22D1 CTNNB1 ARHGAP35 CRH BAG4 CORT PGK1 RPL21 IDS PFKP BSCL2\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "SV2C-expressing interneuron" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: DNER SYT1 KIT MTRNR2L1 SCG2 PCDHGA6 SLC6A1 GRIN2A RAB3C CALM3 MT-CO1 RTN3 NDUFB1 PGAM1 RELN SNAP25 ATP1B1 GAD1 HSP90AB1 TF MORF4L2 STMN1 SERPINE2 BSN ATP6V1B2 MTRNR2L6 B3GALT2 COX7A2L SLC6A17 YWHAG SLC9A6 HMGCS1 SLC12A5 NREP ADRA1D FXYD6 C11ORF31 HMP19 ATP1A1 GPM6A PRDX3 GNAQ AP1S1 PIN1 MTCH1 FAM71E1 ARL6IP1 IDS ACTG1 EIF1AX SCN1A APLP2 RPS28 OLA1 MTRNR2L12 GDI1 WDR47 RAB3A GSKIP ERBB4 BCL11B QKI MAP2K1 BNIP3 CHCHD2 ARL8B TMOD2 CNTNAP5 VAMP2 ZNF385D EPHB6 CHL1 UTRN PTMA ELAVL4 UQCRQ RHBDD2 CLPTM1 SST DOCK10 KLC1 RASGRF1 CPNE2 TRPC3 HCN1 TPPP ATP6AP1 PDGFRA ETFB AES NCALD CABP1 PRKCB PCSK1N WLS UBE2E3 EIF4A2 SYT11 SCAMP5 C5ORF63 DPYSL2 BIRC5 PAFAH1B2 STMN2 SERINC1 ITM2B FBXL16 CNRIP1 PJA2 MRFAP1 COX6C MAP1B GAPDH YWHAH NDRG3 PRDX1 LDHB HS6ST2 KCNC2 ALDOC UQCRH NPTXR FABP5 PPP3CB TRIM37 CXCL14 LPPR4 TMEM59L SELT SAP18 VPS35 HMGCR OLFM2 TGOLN2 CLIP3 CYFIP2 KCNIP1 MAP1LC3A CAMK2D PKM NDRG4 MT-ND1 WDR78 DYNLRB1 TUBB2B CRYAB GHITM MT-CO3 LINC01314 SNCB SCD5 SDCBP SYN2 BEX4 S100A6 OAZ1 ATP2A2 MT-CO2 ZNF536 TSC22D1 MLLT11 COX7C UBB APP SPOCK2 VSTM2L B3GNT1 NDUFV1 ARL8A UQCRFS1 RPL17P50 ATP1A3 DKK3 RAP1GDS1 AP1S2 FIGN COL25A1 NDUFC2 TCTE1 STMN3 DNAJC4 SYN1 SSBP3 PREPL ARF5 MPPED1 DYNLL2 PRNP GAD2 LINC00087 TERF2IP CTNNA2 NGRN CDK5 SPP1 ARL6IP5 TMEM230 CDS1 NAP1L3 TCEB1 CERS6 PRPS1 DBNDD1 DNAJB6 CADM2 AKAP12 PGK1 MRAS KCNMB4 GABARAPL1 SYNGR1 TSPYL1 RAB11A NDUFA4 HSPA8 ACLY PACSIN1 TPGS2 NPTN CHMP4B CDK14 PNOC TMX4 CDC42SE2 AP2S1 GJD2 TMEM14A PRKCE GOT1 ATXN10 TUBB3 GABARAP TBC1D15 RAB3B ARFGAP2 SYTL2\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "SV2C-expressing interneuron" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MT-CO2 MT-ND4 MT-ND2 MT-ATP6 SYT1 MT-CYB MT-CO3 MT-CO1 KIT SNAP25 MT-ND3 DNER CALM1 GRIN2A SLC6A1 FXYD6 SPOCK1 MT-ND1 OR6D1P MTRNR2L1 TSC22D1 HMP19 RELN BCL11B CXCL14 ZNF385D MTRNR2L12 NAT8L INA APP DKK3 MT-ND5 GRIK1 BIRC5 BASP1 CLSTN1 OPA1 MAP4 PRNP ARL4C MAFB HSP90AB1 SRP14 HSP90AA1 SELT THY1 CAP2 PAFAH1B2 RPH3A CADM2 PTCHD4 GDI1 PTPRN ID2 RPS28 CD99L2 NDN TSPYL1 TMSB4X CLSTN2 YWHAB PTPRN2 RTN1 SLC6A17 PKM PTPRT FSTL5 PCSK1N BEX4 PLCB1 RTN3 CCK TPPP MBP MAP1B PNMA2 SCD5 MORF4L1 TMEM130 NDUFB11 IDS MTRNR2L8 CALM3 PLP1 ENSA DNAJB9 SQLE PTPRM CDK17 MGST3 FBXL16 DOCK10 CXXC4 SUB1 PREPL TMSB4XP4 GUCY1B3 APLP1 GNB1 RUNX2 RAB3A PGM2L1 CLIC4 MPC2 MARCKSL1 PPIA APLP2 GAD1 TMA7 SYN1 DNAJA1 MSMO1 PEA15 PSAP SV2C STMN2 TRIM37 SPDL1 KCNC2 SPOCK3 COX6B1 UBQLN2 SLC7A2 TBCA PEG10 TSPYL4 CTSD EIF4G2 CIAPIN1 SERINC3 ATP1A1 PNMAL1 PRKAR1A GPM6A TAGLN3 PPP3CA ATXN10 GRIP2 SUMO1 REPS2 DIRAS3 VDAC2 RPS19BP1 MTATP6P1 LPPR4 WBP2 LIMK1 FAM127A TOX2 ALKBH7 EFR3A PPP2R4 GAD2 PHYHIPL ERBB4 TMTC1 THSD7A EID1 KCNAB1 OCIAD1 CAPZB ELAVL2 KIF21A RAB3IP KCTD12 LUZP2 ROBO2 TOMM7 GRPEL1 PGK1 LINC01314 SNRPN DLX1 CLDND1 PDLIM5 UCHL1 SPOCK2 SLC39A10 TM2D3 PJA2 DNAJC6 DYNLL2 NARS PDGFRA KCNH5 SH3GL2 TNFAIP8L3 CLU ACLY GLO1 GPX4 PLD3 SERPINI1 RP11-111M22.2 NR2F2 RNF208 GSK3A ZFAND5 FAM219A PPP1R7 CYC1 CNTNAP5 SUMO3 HMGCR COPS8 CHRDL1 PEX5L SYT11 SCN2B SLC25A6 PTMA HCN1 BEX2 SARAF SCN1A YWHAG HDAC1 DCTN1 EYA4 YWHAQ NHP2L1 RNF11 NDUFB2 RPL37A SYN2 NDUFA13 KIF3C SCN3B TUBB4B EPB41L3 VAMP2 FTH1 JUND SIRPA BEX1 PEBP1 NDUFA11 ATP6AP2 UQCRC1 DYNLL1 VPS35 ATP5B TMEM59L NRIP3 INSIG1 COX6A1 CPE SELM DPY30 HNRNPH2 FIS1 TUBA1A RAB6C-AS1 ATP6V1C1 CHL1 PPM1A TMEM230 KCNAB3 PLCXD3 RAB3C D4S234E TUBD1 KLC1 RASGRF1 ATP1B1 ZNF536 SULT4A1 ALDOA RP11-219A15.1 RPL6 CFH APOLD1 RPL36A PCDHA9 PCDHA4 PCDHAC1 PCDHA10 PCDHGA5 PCDHGA10 PCDHGA6\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "SV2C-expressing interneuron" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: NRIP3 SLC6A1 DNER NR1I3 CCK ITM2B PREPL SLC38A1 TSPYL1 SYNGR1 RP11-219A15.1 SEZ6L2 ESCO2 TBC1D15 DNAJC21 DYDC2 RNA5-8SP6 ATP1B1 AES ATP6V1C1 PRNP RCAN2 CLDN11 CHST11 ALK RAB2A SV2B PCYT2 ARPC4 MTPN RGS12 THY1 TPI1 ZBTB20 DPYSL2 MAF SCAMP5 TMEM144 MRPS21 IDS RAB6A PTPRM CRKL GAD2 EPB41L3 QKI CD99L2 EIF4A2 CALM2 ETV1 UQCR11 CLSTN1 PTCHD4 NMNAT2 MT-ND4 PRDX2 PROX1 SEPT1 TMA7 COX7A2 ATP5A1 ELAVL2 STXBP1 GDI1 MT-CO2 SARAF SERINC1 GNAQ ISOC1 KCNAB1 PCDHGA5 BIRC5 RPL23A FXYD6 SERTM1 CALM1 DNM3 KLHL5 HEG1 PEBP1 YJEFN3 PRKAR1A COL4A3 PPP3CA SLC9A6 PPP2CA DPP6 STMN2 PTMA MRFAP1 PRKCB CDK14 UBE2D2 EYA4 ATP1B2 PLCB1 CDK5R1 ARL8A PREX2 TOX3 CDC42SE2 APLP1 NARS BCL6 PRKCE KIT VEGFA NAPB SSBP3 FAIM2 RTN1 DKK3 CACNG3 PPP2CB SERF2 RPL17-C18ORF32 C18ORF32 TF GTF2H2C_2\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "SV2C-expressing interneuron" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: SYT1 DNER KIT MTRNR2L1 RTN4 MT-CO2 MT-ND1 DNAJC21 GAD1 SLC6A1 CNTNAP5 MT-CO3 GOLIM4 REEP5 MAP2K4 PRNP ATP1B1 CSDE1 RELN NUDT21 SYTL2 UBE2V2 HMGCS1 RPS5 STMN1P1 AP2M1 STXBP1 OPA1 ATP9A TBC1D7 SNCA PRKCB RAB3C ATP6AP2 CKB ZNF365 GMFG GUCY1B3 CADM2 VSTM2A RPH3A KCNC2 ROBO2 PTPRT RUNX2 MT-CYB RTN1 FSTL5 GOT1 PRKAR1A SLC10A4 APEH NDFIP1 RP11-111M22.2 TRIM36 FIGN SPOCK1 SUMO2 SMIM13 PNKP ACAT2 TOX2 PSMD12 DNAJC5 NGFRAP1 PPP2R2B GABARAPL2 PEX5L CCT5 PTCHD4 VDAC3 PPA1 GAPDH HMGCR MPI LPPR4 MT-CO1 CADM3 MT-ND4 TOMM20 QKI FXYD6 SYNGR1 STMN1 LDHB PSAP C19ORF53 GABRA5 SAP18 ITFG1 PRKACB ITM2B SV2C CALM1 ENSA SSBP3 RHOB DPP6 ACTB CYFIP2 SNCB CTNNB1 CFH SLC9A6 C8ORF4 IGF1 RTN3 DOCK10 CHL1 MAFB ATP2A2 VSNL1 SLC25A48 TBC1D15 ISCA1 TMEM130 ESCO2\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "SV2C-expressing interneuron" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: SYT1 ATP1B1 DNER SNAP25 MTRNR2L1 GAPDH CALM2 KIT MT-CO3 SLC6A1 CDH13 MT-CO1 RPL37A TOMM7 RPL32 NDUFA4 ARL6IP1 PEBP1 HSP90AA1 SYTL2 RAB3B MT-ND1 RPL26 PTMA RPL21 EIF1B EIF4A2 NDUFS5 COX4I1 CCK TMSB10 RPL38 TPT1 RPL13 CD99L2 TMA7 GRIN1 PSMA7 TMOD2 RTN1 STMN1 CDK14 CXCL14 GRIN2A SCN1A PTCHD4 MTRNR2L6 H2AFZ CEND1 MT-ND2 NAP1L3 KLC1 MT-CO2 PREPL SERINC1 MT-ND3 NXPH2 NDRG4 BNIP3 PDGFRA ATP1A1 TSC22D1 TSPAN7 ATP2B2 RPL6 DIRAS1 CORT GAD2 ZNF385D RPS27A GABARAPL2 LINGO1 BSG RPL13A BTBD11 NDUFB4 KCNIP1 MAP1B RAB3IP EIF1AX PCMT1 SPRYD3 ATP1A3 RAB3C RPL7 STMN2 SRP14 FXYD6 DNAJC5 COX14 CKB COX6B1 IDI1 CALM3 NGRN CRH RPS28 RPL41 MPPED1 COX6C GABRA1 PFDN4 PRKCE NSF PGK1 ATP2A2 RPL31 NAPB UQCRH APLP2 PIN1 PRKACB SPOCK2 PLD3 PTPRN2 RPS15 C19ORF53 SUMO1 FAIM2 RTN3 RPS2 TUBA1B ACTB HIGD1A ATP6V1E1 CYCS WDR47 NOP10 TMSB4X ENO2 CADM2 ARF5 RTN4 BEX1 ADARB2 SYT11 AP1S2 CAMK2G CRYAB MRPL51 PPIA MORF4L1 MT-ND4 HMGCS1 RAB6A C14ORF2 ARHGAP35 GDI1 TGOLN2 ATP5H CRKL RPS6 UQCRB CALM1 SPOCK1 AP2M1 SLC1A2 GUCY1B3 COX7C RP11-20I23.1 RPL36A IDS ATP6V0C MIF ARFGAP2 ARL6IP5 PCP4L1 CLTC WASL UBL5 UBA52 STRAP SYNGR1 PSAP KCNC2 PNMA2 COX5B SPON1 KCNA2 PNKP GRIK1 NDUFC2 HPCA NDUFB3 HOMER1 TOMM20 KLHDC3 SNRPN HS6ST2 DYNLL2 MIEN1 LAMP5 RNF208 KIF21A BSCL2 PRNP PPP2R1A FTL ATP6V1B2 BAG4 NDFIP1 PPP2CA MZT1 PROX1 QKI IGF1 RPL35 ALS2CR12 PKM MAP7D1 NDUFC1 ISCU SYN1 FAM96B GPR98 NBL1 UQCRC1 BCL11B DPY30 TERF2IP SLC10A4 FABP7 SCN2B ELAVL2 TMX4 AP3S1 SLC9A6 PPM1A WBP2 FAM174A NDUFB10 TMEM120A NPY2R ITM2C NXPH1 CHRDL1 PTPRM HSPA4 HNRNPH2 CHN1 RP11-632C17__A.1 SULT4A1 BAD RPL12 CPLX3 EIF1 TSPYL4 PPP2R2C PNKD NDUFB7 PAM DYNLRB1 SOX2 NAT8L YWHAH ATXN10 SARAF VAMP2 GRIN3A ACLY SV2C C1QL2 SNCB ATOX1 GPR158 NECAB1 SNAP91 CNRIP1 SCD5 ATP1B2 PIK3R1 SLC25A6 SCN1B PITHD1 TIMP2 ADD2 KLC2 ARL4C UBL4A MAFB COPE FAM134A MTUS1 NDUFA13 NDUFA2 GAD1 NDUFS6 ITFG1 KCNAB1 STXBP1 ATP5O ARHGAP29 HGFAC DOCK10 NCOA4 DIRAS2 LMBRD2 TMEM35 ARF3 JUNB MLLT11 EDIL3 TUBB4A SLC12A5 PFN2 MDH1 ATP6AP1 HMGCR CLSTN1 VSTM2L LYNX1 GADD45GIP1 GNG3 ATP6V1C1 MYL12B NEGR1 PNMA1 TUBA1A TNFAIP8L3 KCNC3 SRM S100A6 MT-ATP6 VPS35 IGFBP5 ALDH5A1 SLC8A2 HSP90AB1 SPTBN1 MAF PPP3R1 DYNLL1 SCOC FIBP UBB TAGLN3 ANAPC11 HCN1 CADM3 DPF3 BEX2 ATP6V1F DPP6 DKK3 ANXA6 TBCB WLS PET100 YJEFN3 NGFRAP1 CTSD UQCR10 ANXA7 ACTG1 PFDN1 PPA1 TPI1 OPCML UBE2N PRDX3 VAPB OR6D1P ALDOC SKP1 ERH COX6A1 FSTL5 SLC25A22 BEX4 UROD ATP5C1 CNTN1 GOT1 PIP5K1B ITM2B RAP1GAP2 COX5A SOD1 GPX4 BASP1 NPTXR ENC1 SYNPR PLCD1 OXR1 NAP1L2 TCEAL5 SUB1 OPN3 C2ORF74 RAB37 FBXO2 RPS3A RP11-111M22.2 RPL11 PEX5L SH3BGRL2 PSMC5 VDAC2 LDOC1 ATP5B RPS4X ETFB ASCL1 CHL1 PSMC3 RAB27B DNAJC6 CST3 WASF1 HMP19 CA2 B3GNT1 CMPK1 GPM6A HAPLN1 ARL2BP MAP1LC3A SGCZ VSNL1 PHYHIPL LINC01314 ATPAF1 CHGB MFN2 FAM3C RAB7A B3GALT2 MZT2B DAW1 NKIRAS1 ATP6AP2 VAMP1 RAB3A DPY19L1 SH3BGRL3 GNB1 LGI2 ACTR1A MORF4L2 QDPR ITPR2 PPP2CB CDS1 REEP5 PDK4 AK5 MRPL52 ATP6V0B MAPK1 CFL1 PITPNA DHCR24 PTPRN PEG10 ACOT7 MRPL33 NDUFA12 CLSTN2 RPL17-C18ORF32 BIRC5 ALDOA UQCR11 SERF2 RPL3 C18ORF32 AC244489.1 PCDHA10 PCDHA4 PCDHA9 PCDHAC1 PCDHGA6 PCDHGA5 PCDHGA10 CFH HNRNPA1P40\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "SV2C-expressing interneuron" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: TBC1D15 SYT1 KIT ATP1B1 DNER MT-CO1 CKB PRNP RAB3B CALM1 SNAP25 CCK RPS15 ARL6IP1 APLP2 SLC6A1 RAB6A NAPB TERF2IP DPYSL2 GAD2 PDP1 STMN1 GAD1 PRKCB ATP6V0C HSP90AA1 RTN1 TMA7 AP2M1 ITM2B SPOCK1 KIF1A DPP6 RP11-20I23.1 CXCL14 FAIM2 MT-CO2 ATP1A3 THY1 RPL13 ATP6AP2 CNTN1 RAB3C CALM2 GAPDH DYNLL1 SERF2 APLP1 VSNL1 EIF4A2 ATP1A1 CAP2 UBB PJA2 UQCRH KCNC2 HMP19 ACTB PGAM1 NRCAM SV2C FAM174A CLIP3 MAFB TUBB4A RPL13A TMSB10 ATP2A2 CDH13 SCN1A SNCB MT-ND4 CALM3 KAL1 TSC22D1 KLC1 RPL41 PREPL UBA1 ATP5F1 RPL32 TMX4 C14ORF2 ATP1B2 STMN3 YWHAG SCG2 GRIN2A KIF5A NDUFC2 ACTG1 ISCA1 WBP2 KCNAB1 APP ID2 OLFM2 RTN4 CHN1 SELT VAMP2 SRM ATP5I SERINC1 RPS12 BCL11B ATP6V1F MAP2K1 CPLX3 UBE2V2 FTL ATP6V0E2 MAP1A TMEM59L COX6B1 SAMD3 NDUFA4 RAB1A PPIA CLSTN1 PFN1 SERPINI1 TSPYL1 EGFR CREG2 PEBP1 DCTN1 TUBB2A NDN CEND1 ARPP19 INPP5F PRKACB CADM2 DNM3 FTH1 STMN1P1 PPP3CB DKK3 RLIM PLD3 RTN3 SNRPN STXBP1 GPM6A KCNH5 CA11 TOX2 EFR3A ACTR10 ATP5E PTPRT PMEPA1 MT-CO3 AP1S2 HIGD1A YWHAQ PLCB1 CLU PKM SLC12A5 BRK1 RPL18A CLTC C4ORF3 DDR2 HMGCR RPS6 PITHD1 SLC38A1 TUBA1B NDRG4 SEPW1 NXPH2 CDS1 FGF12 ARL8A PSMA7 CCDC85B GABRA1 JAKMIP1 H2AFZ SYNPR MPI PPP2R1A MTRNR2L12 NPNT ROBO2 DIRAS2 FAM43B EIF4G2 KRAS ARF1 MRPL52 SLC22A17 CDC42SE2 STRAP ZFAND4 HSPB8 PSMC3 LDOC1 RAN MTRNR2L1 PGRMC1 CRYAB FIGN FXYD6 THOC7 DNAJC4 NPTN FASN NMNAT2 C12ORF57 TKT RPL11 RPL26L1 PCBP1 VDAC1 COX7C KCNIP1 RPL37A SLC7A8 BSCL2 LAMTOR5 RELL2 AP2B1 COX17 CLPTM1 NBL1 NDRG3 ASAP1 TOMM70A ISCU GRIK1 TMEM160 AP3S1 DDAH1 PDE1C COX7A2 STMN4 DNAJB9 ATP9A COX8A ALDOA RABAC1 RPL35 TOLLIP C9ORF16 LMBRD2 JUND TOX3 DSTN HPRT1 LPPR4 CNRIP1 POLR2I VAPB EPHA6 CACNG3 ZBTB20 SLC8A2 MAP2K4 PTPRN GPR158 SYN1 DYNC1I1 PID1 C18ORF32 RFK CIAPIN1 ERBB4 RORB RAB3IP PSENEN NEGR1 TUBD1 ATP5G2 SNX3 MAP1B THYN1 SEZ6L2 EIF1 SLIT1 FAM43A POLR2L TRPC3 PPP3CA DNAJC5 ENO2 RBX1 MDH1 MZT1 TCEA2 MT1X LCP2 NDUFA12 VAT1L CPLX1 MT-ATP6 CTC-575D19.1 CLIP2 COX6A1 TPI1 ATP6AP1 GPRC5B SHARPIN SPOCK2 POLR2J TBCA PTPN20A KIF21A PLIN2 ABRACL PRDX2 SCAND1 TMEM258 ATP5G3 PCP4L1 PGK1 GRINA SYT11 SPRYD3 RHOB NCDN MZT2B DYNLRB1 RGS12 SNRNP25 TMSB4X MAPRE2 SYNGR1 NDUFS5 PHYHIPL MARCKSL1 ITFG1 ARL6IP5 ATP6V1B2 COX5A OXCT1 MBP COX5B NHP2L1 BTBD1 RPS28 PPP2R4 TBC1D7 NPTXR PTPRN2 HINT1 KCNAB3 TCEB2 ATP6V0D1 RGS8 EPS15 GNAQ FGFR3 CITED2 ANK1 MLC1 CRYM FAM127A HAPLN1 SRP14 YWHAZ ZFAND5 GUK1 PSAP MAF VDAC2 TEX2 OCIAD1 SERPINE2 TMEM130 NDUFB11 PFN2 PPDPF PACSIN1 OXR1 MAOB CMPK1 MAPK8IP2 ARHGAP35 RAB3A YWHAH SSTR2 PPM1A NDUFB2 CHST11 KIF3C AK5 HCN1 BAG4 RP11-111M22.2 MTRNR2L8 ARF5 MYL6 NTNG1 SRP9 GOT1 MRPS21 APOL6 CCDC25 CDK17 STMN2 SLC25A11 RPL23A ATP6V1A FNDC4 CRH TOMM7 ATP5B RPS5 CTSD RRM2B MORF4L1 WBSCR17 RPS3A LANCL1 ATP5C1 C1ORF52 NDUFA13 SLC25A5 PROX1 PTMA ADSS UHMK1 NECAB1 LDHB RAB5C ARL4C NDUFA1 MAST3 ATP11C GLO1 RPL38 RPL31 REPS2 NDUFB3 C11ORF31 BASP1 MPC2 PRKAR1A PTCHD4 MGST3 B2M RPL21 GABARAP MBOAT7 AC244489.1 PCDHGA10 PCDHGA5 PCDHGA6 SYTL2\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "SV2C-expressing interneuron" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MT-CO3 MT-CO1 SYT1 MT-ND4 KIT ATP1B1 SLC6A1 MT-ND3 MT-ATP6 MT-CO2 MT-ND1 MTRNR2L1 MT-CYB ACTB CALM2 DNER RTN4 MTATP6P1 EIF4A2 RAB3C PTCHD4 GAPDH MT-ND2 ATP6V1B2 PJA2 RTN3 APLP2 PLCXD3 SNAP25 ATP1A3 ARL6IP1 PRNP PPP2R1A FXYD6 EID1 CALM3 PKM DPP6 SERINC1 SCN1A GRIN1 PLCB1 APP NGFRAP1 PHYHIPL PRKACB KIFAP3 MBP CDH13 CPLX2 KCNC2 HIGD1A PNMA2 SYN2 BCL11B PEBP1 NXPH2 SLC38A1 PREPL CADM2 PGRMC1 CNTN1 FAIM2 PCSK1N TSPAN7 LGI3 TF TOX2 AES AP2B1 RTN1 GABARAPL1 GRIN2A PID1 PCDHB10 KIF3C ZNF536 SH3BGRL2 PDP1 HK1 SNAP91 VSTM2L CERS6 RPL38 KIF21A DKK3 NUDT4 FGF12 DPYSL2 LINC00087 CYCS RPS28 MTPN PSMC3 CXCL14 PCP4L1 ARF1 ZNF385D PSAP CCDC25 YWHAG SLC22A17 MAP7D1 SERINC3 SOD1 ARX SLC10A4 TUBB2A IGF1 MTRNR2L6 GAD2 CLDND1 MAP1A OPA1 DUSP4 SPOCK1 NDRG4 VSNL1 MAPK1 THY1 RP11-219A15.1 ARL6IP5 BSG UBA1 HSP90AB1 PRKCE ATP6V1C1 SCOC PPP3CA NFIA CKB SV2C GNB1 TBC1D15 RAB11FIP5 KITLG CRH RPL36A OAZ1 GLUL CPLX1 RPL15 TUBB4A DGUOK ACP1 PPP2CB MRFAP1 ERBB4 CAB39 COPE NCDN ENO2 MAFB VDAC1 CNR1 HSPA8 DUSP1 ARL8B RNF11 TRPC3 ID2 CCDC115 MIEN1 C1QBP CTNND2 NDUFA1 KLHDC3 DLX6 GPCPD1 GABPB1 TSPYL1 CTSD SFRP1 FBXW11 NAP1L3 SYT4 DNAJB6 PPIA NDUFB5 SLC25A4 BAI2 OXR1 TERF2IP MAP1LC3B CHMP5 ETV1 CALM1 ABHD14A TUBB CYFIP2 PCBP1 WDR47 SUMO3 NPTN TCEAL7 YWHAQ MFN2 DNAJA1 ATP6V0C REEP2 FAM174A TUBA1B FAT1 EFR3A PHB BRICD5 NCOA4 HRH3 BASP1 NAPB FBXL16 DYNLL2 DNAJB9 RLIM NECAB1 ASCL1 SPTBN1 RPS27A SYN1 NRAS THOC7 GAD1 MTCH1 CETN2 ESCO2 GRINA SKP1 MORF4L2 IQSEC1 STXBP1 CDC42SE2 VAMP2 CBLN4 PNMAL2 NDUFS5 TPT1 NRSN2 YWHAH AK5 GABARAPL2 MDH1 EFHD2 HSPA4 MAF QDPR SSTR2 SPOCK2 RASGRF1 SYNGR1 PIP5K1B SLC12A5 MTX3 FAM131B ACTG1 ZBTB20 CAP2 HCN2 CFL1 ATP1A1 NAP1L2 LUZP2 RREB1 OXCT1 ARHGDIA MGST3 FSTL5 PPP1R7 EXTL2 PTMA PVRL1 RP11-20I23.1 NAP1L5 UBE2L6 C7ORF50 LAMTOR5 RHEB ALDH5A1 SNX10 MSMO1 SLC8A2 RAB5C PFDN4 EEF1A2 KLC1 SH3RF1 VPS35 TGOLN2 CACNA2D2 ATP6AP1 PPP2R2B ISCA1 KIF5A SPHKAP NAT8L PPP2R4 RPL37A GOT2 SRP9 MPPED1 HAPLN1 RASGRP1 MT-ND4L SRP54-AS1 RAB6A AP2S1 YWHAB WBP2 NDUFA2 PTPRT IL12A UCHL1 CDK14 CLTA SLC6A17 RPL35 RAD23B PGM2L1 FAM219A ANAPC13 RAB3IP PFN1 PAFAH1B2 SDCBP MPI HS6ST2 DYNLRB1 MTRNR2L8 SDHAF1 WASL RCAN2 MARCKSL1 NMNAT2 MAP4 HAPLN4 MTRNR2L12 CITED2 EIF1B SCN4B AP1S2 ITM2C SCAMP5 SRP14 KCNAB1 STMN1 TSC22D1 CDK5R1 OCIAD1 CRKL KMO TMTC1 ATP9A ATP6V0D1 FTH1 GDI1 RAB4A MORF4L1 PTPRS RPL11 UBE2N MDH2 CXXC4 PRKAR1B TCEB1 RP11-111M22.2 FIGN SNCB NRIP3 COX7A2 ARL4C RPL41 TMEM258 SUB1 CCK KLC2 RPL31 GOLIM4 ISCU ITFG1 GPM6A LIMK1 KCNIP1 CLU RPL21 RPL3 NSF CFH BSCL2 IDS MBOAT7 PCDHAC1 PCDHA10 PCDHA4 PCDHA9\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "SV2C-expressing interneuron" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MT-CO3 MT-ND4 MT-CO2 MTRNR2L1 MT-CO1 MT-ND3 MT-ND2 MTRNR2L12 SYT1 PREPL GAPDH GAD2 MTRNR2L6 TUBA1A OR6D1P GUCY1B3 C18ORF32 GPM6A SLC9A6 MT-ATP6 PSMB5 PPIA NAP1L3 EYA4 TSPYL1 NXPH1 APLP2 NDUFA8 PTCHD4 KCNAB1 LINC01314 MBOAT7 KIF5A HSP90AA1 RTN3 MAPRE2 PLCB1 RFK CPLX2 RAB3IP PRUNE2 PJA2 ELAVL2 PFDN1 TOX MT-ND1 TMTC1 BEX1 RPL15 NDFIP1 SYNGR1 PCMT1 EDF1 EID1 ATP1B1 CNP ATP6V1E1 SSBP3 TBCB COPS7A PEG10 STX1B GABARAPL1 ACTG1 SMIM13 PREX2 SFRP1 HIGD1A SLC6A1 PPP2R1A ATP1A3 CYFIP2 EIF1 MT-CYB SCN3B TMEM132D BSG STMN3 QKI MAP4 CLU ADD2 CAMK2N2 PHYHIP NDRG4 ATP6V1G1 ELAVL4 RTN1 TMEM230 DNER ZNF385D ELMO1 SARAF COX6A1 NTNG1 NEK7 SKP1 TOMM20 MTRNR2L8 CHP1 SNAP91 PKM NDUFV1 RUNX2 AP1S2 MAF SPOCK1 SYT11 REEP2 RAB3B SYTL2 CFH NGRN IDS NSF HNRNPA1P40\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "SV2C-expressing interneuron" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MT-CO3 TBC1D15 MT-ND4 KIT SERINC1 SYT1 SNAP25 MT-CO1 MT-ND3 DNER EIF4A2 SLC6A1 PLCB1 CALM1 PEBP1 CBLN4 PREPL SCG2 PSAP ARL4C SKP1 GAPDH NECAB1 MT-ND2 FXYD6 ACTB RPS28 ALDOC RAB3C CALM2 MT-ND1 CLIP3 APP MT-ATP6 PRKCE CTBP1 STXBP1 NAP1L2 MORF4L1 SLC7A2 ATP1B1 GRIN3A COX6B1 CXCL14 GDI1 NAP1L3 MT-CO2 THY1 TSPYL1 ATP5E RAB2A CDH13 INPP5F HK1 PRNP PPIA ZNF536 RAB6B BCL11B TRMT112 DPYSL2 HMP19 SLC7A8 PLCXD3 APBB1 MT-CYB TSPAN7 TMOD2 NAT8L SLC24A2 PCSK1N FAM174A ATP6AP2 KCNAB1 COX4I1 CSDE1 ATP9A MPPED1 NDUFA11 RCAN2 SCOC RPS4X PPP2R1A SOD1 LINC00087 GABRA1 MLLT11 TSC22D1 GAD2 CADM2 SUMO2 WASL KCNIP1 MTRNR2L12 DKK3 PJA2 ZBTB20 OXR1 ATP5I GRIN1 FASN APLP2 MDH1 FSTL5 PROX1 PDE1C SSBP3 ZNF385D VSNL1 SCD5 TERF2IP RNASEK-C17ORF49 TEX2 ELAVL2 FTH1 MT3 RTN3 SNN FAIM2 PITHD1 SPOCK2 AC011043.1 SPOCK1 CHMP5 NDFIP2 COX6C ATP1B2 CHGB GRINA ERBB4 RPL41 PEX5L SLC17A8 STMN1 MTRNR2L1 DNAJC6 CTSD RGS16 CAMK2N2 NDFIP1 PLCXD2 PGRMC1 ANXA7 RPL13 PTMA NDUFB11 SPHKAP DIRAS1 NKIRAS1 DDAH1 BTBD11 SP8 SCAND1 ZFAND5 TGOLN2 MRPL20 CDK14 CFL1 CHP1 ITM2B ATP1A1 MORF4L2 SYN2 CLTC EIF4G2 MRPS21 PRSS3 MTRNR2L8 UCHL1 ACLY ELAVL4 KLHDC3 NAPB EGR1 C9ORF16 RTN4 SRM ATP6V1B2 TUBA1B SMIM13 BASP1 CNR1 AP2M1 LZTS1 MDGA1 CKB RPL31 MYRIP TOMM70A CLSTN1 TOX2 PCDH17 RBX1 DCLK1 GRIN2A NAP1L5 TRIB2 CAMK2G KCNC2 HSP90AA1 YWHAZ SYT13 NCDN GPR158 PAM CAPZB HNRNPH2 EYA4 BEND5 RAB4A GOLIM4 DPP6 RAB11FIP5 MTATP6P1 PCDHB11 BMP3 GOT1 MAOB LANCL1 ARX NRIP3 ARPC4 RPL37A BSN PPP2R4 COPRS YWHAG NDUFAB1 GDE1 BEX2 C14ORF2 ERH UQCRB SYN1 DNAJB9 RPL35 ATP1A3 RAB5C RPS5 PTPRS SPTBN1 PSMD12 GPX1 ZBTB18 SNCB APOL6 SPRYD3 RTN1 CLU CREG2 CALM3 PPDPF NDUFV1 RPL38 NDUFS5 PPP3CB AP1S2 COA3 PRKCB PEA15 PINK1 TM2D3 PPIF PSMA7 NRCAM UQCRH PMEPA1 CA11 ALDH5A1 TSPYL4 EHD3 ACTR1A BSCL2 SARAF RAB3A ACOT7 NPTXR CIAPIN1 RPL7 NDUFA13 MANBAL BSG TXN UBB UBE2V2 CLDND2 SLC9A6 NAA38 ARF1 SNAP91 NDUFB1 ARL8A NFE2L1 IGF1 ARL6IP1 GAD1 TMEM59L TOX3 OLFM1 GLO1 CACNG6 CAMKK2 NUDT21 KIF21A VCAN YWHAH CORO2B OPCML PTPRM TMEM130 FBXL15 CERS6 B3GALT2 GHITM SH3BGRL3 GRIP2 PPP2R2B BCAP31 AP2S1 FGF12 RPL32 COL5A2 SUMO3 ZNF365 PITPNA YBEY TMSB4X TAGLN3 INA TCEAL7 SSTR2 BEX1 OAZ1 TMX4 COX7B UBL4A NPTN RGS4 YWHAQ KLC1 IDS SLC1A2 CPLX3 MRPL12 DUSP4 MARCKSL1 KLHL12 CHN1 OAT PPA1 DSTN SCAMP5 HSP90AB1 CTNND2 RPL26 GDA SELT DYNLL1 CEND1 GPM6A ATP6V1F NSF SMAP2 PRKACB PHYHIPL SAP18 PNMA2 VAMP1 RGS12 WDR47 SCN1A DNAJA1 NHP2L1 PPM1A JUND SEZ6L2 CAP2 HNRNPA1P40 ALDOA NGRN PGM2L1 RP11-219A15.1 ATP6V0C SERF2 RP11-20I23.1 RPS3A ATP6V1G2 RPS2 PCDHA4 PCDHA10 PCDHA9 PCDHAC1 PCDHGA5 PCDHGA10 PCDHGA6\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "SV2C-expressing interneuron" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: TBC1D15 SNAP25 MT-ND4 PNMA2 SLC6A1 MT-CO1 KIT NAP1L3 CDK14 PGRMC1 PREPL MT-CO3 FSTL5 PRNP MTRNR2L1 NR1I3 ARL6IP1 GRIK1 MT-CO2 PTPRT MT-CYB REEP5 CALM1 ATP1A1 SYT11 CLU MT-ATP6 MT-ND2 CPLX2 CCK GAD1 HMGCR PPIA ERBB4 SPOCK2 ISCA1 CADM2 ATP1B1 HMP19 GAPDH RPS15 RTN1 RAB3B SYTL2 ZNF385D APLP2 CBLN4 NGFRAP1 RPL26 SNAPC5 DYNC1I1 RAB3C NDFIP1 TOMM20 TSPYL1 NIPA1 SLC9A6 ARL8B RPS2 NPAS3 RTN4 YWHAB PTPRM CTNND2 ITM2B FRMD4B VAMP2 KIAA1211 UHMK1 TUBA1A GPR158 TUBA1B GRIN2A ARL6IP5 HSP90AA1 TPI1 LHFPL3 GADD45GIP1 EPB41L3 ATP6V0B NDUFA4 YWHAH SCN1A MORF4L1 EIF4A2 NDUFA5 VDAC2 ATP6V0E2 SYT1 BEX5 SYN2 RPL38 RP11-357G3.2 GPM6A CALM2 CFH MTRNR2L12 TIMP2 THY1 MLF2 CDC42SE2 GRINA NRCAM NDUFB1 CALM3 KITLG PVRL2 BSG MDH1 ID2 AP1S2 MTATP6P1 PCDHA10 C11ORF31 PLP1 MT-ND4L KAL1 NDUFS6 RNF11 CAP2 PTCHD4 VDAC1 PFKP STMN3 ACTB SCD5 TMEM130 TMEM230 MPI INSIG1 NXPH2 PNMA1 C19ORF10 RHEB TPPP GRIN3A RASSF8 TSPAN7 REPS2 PPP2R1A IDS DNER MYO16 SIRPA PPM1A SYNGR3 MTRNR2L8 DYNLL1 ATP2A2 TOX2 RHOB ARHGDIG ELAVL4 RPL13 YAF2 ALS2CR12 LMBRD2 SLC24A2 ALDOC NDUFB8 RPL36A CAMK2G GNAQ SLC25A6 APP PREX2 PRUNE2 CA2 GTF3A PKM YWHAZ PRKACB MTRNR2L6 NAP1L2 AP3S1 FBXL16 SERINC1 TERF2IP POLR2K VSTM2L DPYSL2 GNB1 ARHGAP35 VWC2L UBE2E3 PTMA CTBP1 ABRACL RAB3IP MT-ND3 B2M RP11-219A15.1 ALDOA AC244489.1 RPL17 RPL17-C18ORF32 GTF2H2C_2 RPL7\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "SV2C-expressing interneuron" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MT-CO3 CXCL14 MTRNR2L1 KIF21A SLC6A1 SERINC1 GPM6A FXYD6 MT-CO1 COL5A2 ERBB4 MTRNR2L12 RAB3B PRNP PTMA PTPRS DDR2 MT-ATP6 MT-ND3 MT-ND4 GRIN2A DNER TRIM36 MT-CO2 TF TOMM7 RELN PPM1A KCNC2 DNAJC21 MTRNR2L6 MTRNR2L8 NR1I3 CA11 RPS4X SUB1 TMX4 PHYHIP RPL13 MRPL33 MORF4L2 LPPR4 FSTL5 SCG2 ATP1A3 MT-CYB CALM1 UTRN ARL1 NPTXR LUZP2 NDRG4 PPP3CA ZNF343 TMEM158 SLC38A1 NDUFA13 MT-ND2 NDNF PLCB1 NAT8L RTN4 THY1 FBXO2 TSPYL1 CDH8 GRAMD3 PREPL ZFAND5 CYCS RHBDD2 RTN3 TMSB10 PEX5L DCTN1 SLC1A2 SYPL1 ATP1B2 ATP1B1 SMS SEPT4 SCD5 COPE ALDH5A1 GRIK1 COX5B SYNJ1 NCAM2 PPP2R1A GRIN1 ATP6AP1 NDFIP1 CLU ADAM23 ARL8B RTN1 HSPE1 BAI2 EPHB6 ADARB2 VCAN RAP1GDS1 HSP90AB1 RPL11 SLC7A8 RP11-111M22.2 RCAN2 HCN1 CERS6 SERPINE2 CABP1 GABRA1 ATP6V0C RAB6B TUBA1A SPOCK3 LANCL1 SPTBN1 FAM134A ITM2B NHP2L1 ACOT7 TIMP3 RAB27B TMEM120A BCL11B MORF4L1 GAD1 DCC DYNLL1 PPP3R1 RP11-20I23.1 EFR3A EIF4A2 ATP9A OCIAD1 RPL17-C18ORF32 RPL17 NSF RPS28 AC244489.1\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "SV2C-expressing interneuron" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MTRNR2L1 MTRNR2L12 MT-CO1 MT-ND4 MT-CO3 ATP1B1 DNER SYT1 GAD2 MT-CYB TBC1D15 MTRNR2L6 SLC6A1 CXCL14 MT-ND2 PREPL MT-ND4L MT-ND5 SNAP25 ATP1A1 MT-ND1 RP11-111M22.2 MT-ATP6 PTCHD4 BCL11B CALM1 FXYD6 ZNF385D RAB3B SYTL2 SULT4A1 MT-CO2 TMEM147 NAP1L3 MT-ND3 CPLX3 OLFM2 NFIA PHYHIPL CADM3 VAMP2 CNTN1 PKM ID2 NFE2L1 RAB3IP HSP90AB1 LPPR4 GAPDH TCEA2 PEBP1 ATP6AP1 KIT TOMM20 RPS15 SLC1A2 RPL13 GAD1 TMOD2 STMN2 ATP6V1A PRKACB PDP1 SCN1A SEC61G RPS27A SLC38A1 ANKRD20A11P ATP11C EIF4A2 LGI3 LUZP2 TXN CCT5 RPL26 ATP6V1G1 UQCRH ATP1A3 TUBA4A CLIP3 TSPAN7 TMEM160 NGFRAP1 TOX2 EFR3A STX1B DDN CTNNB1 TGOLN2 REEP5 CEND1 YWHAZ ATP6V0B GPX4 RASGRF1 ASCL1 HILPDA SERINC3 VDAC2 UBE2QL1 OCIAD1 APLP2 MTRNR2L8 ARF3 RAB6A MT3 TCEAL2 COL4A3 SLC22A17 PRKCE VSTM2A GOLIM4 ENO1 SYN2 PLSCR1 VDAC1 SEZ6L2 BEX2 TBR1 KITLG RPL38 ATP5B DPP6 DCLK1 ERH VCAN AES CTNNA2 ITM2B CDK17 RTN3 CNTNAP5 CADM2 CDH13 TCEAL7 SNX10 GDA DLD SNN KCNIP1 IGF1 GABRA1 BAG4 C1ORF52 B2M CDHR1 KCNC2 UBA52 GABRA5 RPS10 MTG1 PTPRS STXBP1 KIFAP3 MFN2 FAM127A C1QBP RTN4 MAP7D1 SEMA4G GOT2 UQCR11 ZNF536 DYNLRB1 SPDL1 NCALD CLPTM1 CLSTN1 TSPYL4 DNAJB6 PPARGC1A TUSC2 TPRG1L KCNAB2 VEGFA JOSD2 S100A6 CTNND2 OAZ1 SRP14 MTX3 KCNAB1 MLLT11 MRPL20 MTATP6P1 CAPZA2 CAPNS1 PPP2CA ITFG1 SYNGR1 PCDHGA6 RASGRF2 EIF1B ARL6IP5 GSTT1 FBXW11 MTUS1 NPTXR PRKCB WSB2 COX7C HSP90AA1 ATP2B2 ERBB4 SPI1 ADARB2 IDS UROD PIK3R1 ARL8B TMSB4X TMEM132D GPM6A ACTG1 SCN2B EIF4G2 PRUNE2 RPL31 GRIP2 PMEPA1 MTCH1 COX7A1 CLU CALM2 NPTN GABARAPL1 PTMA SNRPN GRIN3A SYT10 SLITRK1 MYL12B ARHGDIA RPS12 APLP1 PI4KA NDUFAF3 SCN1B SGCZ COX5B KCNA2 ATP2A2 RPL37A PRNP FBXL16 CD63 ARL4C CAMK2N2 APP ARF1 RAB2A SRM PCDHA10 GLO1 FTL PPIA C8ORF4 LZTS1 HCN1 DLX1 TPGS2 ARFGAP2 NDUFA13 NSF RP11-219A15.1 SLC26A10 NIPA1 CTC-575D19.1 RPL7 AC244489.1 CFH\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "SV2C-expressing interneuron" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MTRNR2L1 SYT1 KIT SNAP25 MT-ND2 DNER SLC6A1 MT-CO3 ELAVL2 RPL37A MTRNR2L6 MT-CO1 MT-ATP6 MT-CO2 CDK5R1 SCN1A MTATP6P1 RAB9A RTN3 PGD SARAF UBE2D2 PCDHGA5 RAB3C NDFIP1 CALM1 GABRA1 SERPINI1 GRIN2A PLCB1 MT-CYB ATP1B1 CNTROB PRKCB GPM6A GRIK1 BIRC5 CTNNB1 KIF21A SYTL2 RAB3B SUCLA2 EID1 LANCL1 CFH VSNL1 ARL6IP5 GOT1 CDC42SE2 ERBB4 THY1 CCK CAMK2N2 SNRPN JUND RASGRF1 YWHAH INSIG1 CSDE1 OLFM1 GLUL TMOD2 AP2M1 PKM GABARAPL2 SLC24A2 CALM2 YWHAB NRIP3 PTK2B DNAJB6 PRKACB STMN1 APBB1 DPP6 ATP11C FSTL5 CDH13 YWHAZ RPS28 LCP2 SPOCK1 KCNH5 ATP1A1 CX3CL1 PHYHIPL EFR3A RPL11 CPLX2 SAP18 ATP1A3 TSPAN7 MAP1LC3B CDK14 B3GALT2 RTN4 RSL24D1 TEFM UBE2V2 ITM2B SYT11 USMG5 FAIM2 KAL1 ELAVL4 NCOA4 UQCRB SLC25A4 SQLE NFIA RAB40B SLC22A17 SERINC3 EFHD2 LMBR1 TCEAL3 TERF2IP ITFG1 SLC38A1 BSN STMN2 FXYD6 SERP2 HSP90AA1 PREPL NCEH1 GLDN NXPH1 SV2C CAMK2G TRIM37 LUZP2 HSP90AB1 D4S234E NDFIP2 COX8A AC244489.1 RHBDD2 GAD1 MARCKS CBLN4 NAP1L3 AEBP1 TSC22D1 MAF SPOCK2 COX7C YBEY ARX DCLK1 SLC1A2 CHL1 ATP6V1E2 TDRD7 MT-ND5 MT-ND4 BCL11B HIGD1A SERINC1 ATOX1 RPL31 RPL12 MRPL55 CAPZA2 LMO4 PGM2L1 ZBTB20 VDAC2 VSTM2A DYNC1I1 IDS RPS3A ATP6V1G2 RPL13A\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "SV2C-expressing interneuron" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MT-CO1 RAB3B MT-CO3 MT-ND3 IDS MT-ND4 SYT1 ATP1B1 KIT HNRNPA1P40 SNAP25 TMA7 NRIP3 PET100 RPS15 RPL35 CLU HMP19 TMSB4X GRIN2A MT-ATP6 SLC6A1 THY1 RPL8 HSPA8 ATP1A3 NXPH2 FXYD6 MT-ND1 FSTL5 AP2M1 CHGB PDP1 CRH RP11-111M22.2 MTRNR2L12 KITLG RPL23A MT-CYB BRICD5 MT-ND5 B3GNT1 PCBP1 NDUFA4 GRIK1 PGM2L1 EYA4 RTN1 PLCB1 SLC22A17 ATP5A1 RTN3 PDCD5 CYFIP2 YWHAZ UCHL1 TRPC3 C14ORF2 CALM1 WIF1 SERF2 OAZ1 NRCAM MT-CO2 SLC38A1 INA KIFAP3 ZNF385D BIRC5 NR1I3 ATP6V0C RAB40B SOX2 RAB6B KCNAB1 FAM96B UQCRC2 GAP43 TUBA1A MEGF11 APLP1 PREX2 GALK1 SKAP2 RAB3A PRNP FKBP8 NECAB1 TGOLN2 ADARB2 ATP6V1A UQCR11 FTH1 SCN1A GPX4 RNASEK-C17ORF49 RP11-20I23.1 SSTR2 DUSP1 CABP1 DNER PRDX2 LAMP5 HSPE1 MGST3 VAPB MAP7D2 CHL1 GAPDH TSC22D1 RPL26 PSAP CKB ARL6IP5 RASGRF1 RAB3C FXYD7 PRKAR1B EIF1B GNAQ DPP6 GOT1 SLC7A8 GRIN1 SPRTN MTRNR2L1 GLRA2 SPCS2 CHMP5 TCEB2 CLIP2 MTRNR2L8 MAP1B NDUFAF2 ACOT7 SLC24A3 PLCXD3 ATP5E KIF5A TUBB2A PEBP1 NDUFB8 APLP2 MARCKS PREPL PJA2 RPS12 CACNG3 CRIM1 ALDOC COX5B RPL3 DNAJC5 FTL RPS6 OR6D1P VDAC3 SEZ6 NDUFS5 MFSD6 PCSK1N HINT1 GDI1 SP8 GAD2 MFN2 CCDC85B TBCB ACTB SCG2 EDF1 RPS3A GRINA YWHAG GPCPD1 MIR6723 MTCH1 OCIAD1 CCK CLSTN1 LUZP2 KIF1A GPM6A USMG5 ATP5G2 BCKDK GSTO1 UQCRB ATP5B ATP2A2 SIRPA TMEM130 RPL18A PCDH8 GRIP2 GNB1 COX17 PANX1 SERINC1 SPOCK1 VCAN CNR1 OXR1 ZNF536 NDUFB10 NFE2L1 NUP37 RPL36A RPL13A SKP1 NRAS MDGA1 HSP90AA1 CYB5R3 HDAC1 SEC61G ATP6V0E2 LINC00116 SNAP91 SNCB TPRG1L SRD5A1 RAB3IP PPM1A CHN1 ENSA WDR47 CAPNS1 ERBB4 CALM2 AK5 PIN1 MAP2K2 SULT4A1 ATP6AP1 NDUFV1 MT-ND2 CAP2 RPL6 ENOPH1 UBE2E3 CFH PCDHGA5 PCDHGA10 PCDHGA6\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "SV2C-expressing interneuron" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MT-ND4 MT-CO1 RAB3B TMSB4X BIRC5 ATP1B1 RTN3 PTCHD4 SLC6A1 SYT1 RTN4 DNER RPL15 ATP6V1E1 ATP1A1 RTN1 CYFIP2 MTRNR2L1 TSC22D1 NR1I3 TUBA1A PDP1 ATP1A3 BSCL2 NHP2L1 NDUFB8 ATP6V0D1 OLFM2 PTPRT RPS27A PNKP SCN1A MT-CYB ACP1 ARL6IP1 KIF1A COX6A1 CEND1 B3GNT1 WBP2 THY1 PPP2CB OR6D1P SLC32A1 PGK1 KCNC2 MT-ND3 APP ARF3 MT-ND2 SGCZ GRIN2A NAPB FXYD6 BCL11B PROX1 ITM2C RPL13 SNAP25 ZNF350 APLP2 RPL41 PLEKHD1 ARFGAP2 CALM3 TMSB4XP4 TMA7 PTPRN2 PLD3 TUBA4A STMN4 ARF1 HMGCS1 PLAC8L1 NFIA NDUFC2 TBCA TAGLN3 CABP1 MYL6 COX7B NDUFB5 GFRA2 FAM174A ERBB4 ASAP1 PREPL CCDC61 METTL23 KLHL5 CCK HINT1 DYNLL1 SULT4A1 DPP6 GRIN3A KCNH5 SARAF MT-CO3 EGFL7 LMO4 MTRNR2L12 UBE2E3 STXBP1 SYT11 BEX2 TEX15 PPM1A RNF181 APBB1 OXR1 IQSEC1 NGFRAP1 COX7C UBE2N CD24 BEX1 TSPYL4 SYN2 PDE1C TUBB4B RPL8 DIRAS1 NCEH1 NDUFS5 CLSTN1 GNB1 VCAN C16ORF13 CHGB EIF1 MAF CHL1 FAM71E1 LIG1 PCSK5 SUSD4 COX4I1 RAB6B RAN MTRNR2L8 ACACB FAIM2 AP2M1 CLIC4 GRIK1 NRCAM EIF4A2 PDCD5 GHITM C6ORF118 CLIC2 PCDH15 SCN2B COX7A2L SCAMP5 NCDN ELAVL4 CD63 SNAP91 GAPDH CPE MAP1B ADTRP SIRPA PGAM1 MAP7D2 NRIP3 PTMA CRIM1 UBA52 NDFIP1 FTL NTNG1 C10ORF10 CDK14 RFK OCIAD1 SERINC1 KCNV1 MAPK8IP2 YWHAB KIF21A KCNAB1 FSTL5 DYNLRB1 USMG5 RPL35 ATP5G3 ERH PIK3R1 ALDOC SFRP1 CHST9 SLC1A2 SRP14 UBE2D2 CALM2 SKP1 LIMK1 MT-ND1 GPM6A CLIP3 TXN SLC25A6 PRKACB RP11-195F19.5 RAB7A BNIP3 STMN2 CREG2 STX1B GAD2 C4ORF3 RPL37A EDF1 ATP6V1A SYT3 DNAJB9 BAG4 S100A6 RPL31 RP11-111M22.2 CHN1 FIS1 SEZ6 UQCR11 RPS2 SV2C TSPYL1 COPE SLC7A8 CSDE1 SNRNP25 RAB3IP ANAPC13 ISG15 KLC1 QKI MPPED1 PCDHA10 NCAM2 MT-CO2 EIF4G2 VDAC3 CDH13 IQCH SPOCK1 CLU DSTN MORF4L1 CA2 ARL6IP5 DOCK10 COX6B1 RPL39 SLC7A5 THYN1 NPTN TKT MMD PMEPA1 ARPC4 HN1 ID2 ITM2B WBSCR17 RPS28 HCN1 PRELID1 ARL4C GRINA FTH1 ALDOA RNASEK-C17ORF49 RAB6A MTRNR2L6 MIF PCDHGA6 PCDHGA10 PCDHGA5 TBC1D15 DNAJC21\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "SV2C-expressing interneuron" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: SYT1 MT-ND2 MT-CO1 MT-ND4 MT-CO2 MT-CO3 RAB3IP TMSB4X RPS15 ATP1B1 PPIA RPL37A PRNP MT-ND3 ATP5B SEMA4G PREPL HHIP CCK TSPAN7 ATP6V0E2 NGFRAP1 NRCAM MT-ND1 LANCL1 DNM3 NMNAT2 CALM2 CD99L2 ARFGAP2 NHP2L1 PELI2 GAD2 TEX15 RAB6A TMEM59L ELMO1 ATP2A2 SOD1 PSMC1 UQCRB OPALIN GRIN2A RPL15 TAC1 MBP PTCHD4 CDC42SE2 PPM1A OLFM1 FTH1 DCLK1 SLC31A2 SP9 B3GALT2 ACP1 HSP90AB1 SCD5 NECAB1 SNAP25 TERF2IP THY1 PIK3R1 BEX2 MYO16 RAN APLP1 MAL INA PEBP1 GPM6A NPTN IGFBP5 EFHD2 HMGCR EIF1AX IDS GABRA1 KIT PPP2CA C14ORF132 CLIC2 NDUFC1 SAP18 APLP2 SPRYD3 SKP1 YWHAQ ACSS1 EXTL2 CTSD FRMD4B FARSA OLA1 ACTG1 HHATL CAMK2G MYRF FAIM2 RPL13A ATXN10 PMEPA1 SLC7A8 MAFB EFR3A ITFG1 RTN3 CALM3 MT-ATP6 ZBTB20 CKB POLR2L TPT1 CAPZA2 TLE4 RNF11 MTCH1 GRIK1 BIRC5 FRZB CALM1 CTC-575D19.1 PDP1 RPL32 ANKRD20A11P GDI1 ANAPC13 HMGCS1 MTND1P23 ANLN VSTM2A YWHAZ NDUFB1 TOMM20 RPS6 RTN1 CLTC ERBB4 PCDH19 LDHB TMX4 EYA4 CRIM1 AP1S2 CD59 PLEKHD1 SYTL2 ZNF385D RAB3B MIF AC244489.1\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "SV2C-expressing interneuron" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MT-ND3 MT-CO3 MT-CO1 MT-ND4 SYT1 MT-ND2 MT-CO2 MT-CYB MTRNR2L1 SLC6A1 SNAP25 KIT FXYD6 GRIN2A RAB3C RTN3 PREPL TMSB4X ATP2A2 MT-ND1 ZNF536 SERINC1 CHL1 ACTB MTRNR2L6 PPIA ARL6IP1 SARAF SPOCK1 TOMM20 DNAJC21 RTN4 YWHAG INPP5F ATP1B1 DNER MT-ND5 IQSEC1 KIF1A PRKACB CDK5R1 RTN1 SCD5 APLP2 CEND1 GAD2 CLSTN1 SLC22A17 NGFRAP1 TSPYL4 UQCRH NPTN TBC1D15 MT-ND4L ITM2C VAMP2 SLC12A5 CLTC PPP2R1A CADM3 TKT TMEM130 SOX2 SNX10 ATP9A SYNJ1 RPS28 CNTN1 ARL4C CTBP1 PHYHIP CALM3 NRGN SYN2 CAMK2N2 GAD1 TMEM59L SNRPN IDS PJA2 FAIM2 TPI1 MT-ATP6 PKM CA2 RAB3A GRIN1 PRNP CALM1 DUSP6 SCAMP5 ATP1A3 CLU FGF12 MORF4L1 RAB3IP NDFIP1 NXPH1 SUMO2 NEGR1 SUB1 RFK GDI1 NECAB1 PSAP TMEM255A TERF2IP SEZ6L2 SLC38A1 EIF4A2 KCNC2 GPM6A MAP1B ENOPH1 NSF GADD45GIP1 LINC00086 PCBP1 THBS2 NDUFB10 EPB41L3 DHCR24 ATP5B FBXW11 SPRYD3 FAM174A HTRA1 RAB3B USMG5 ACTR10 CCK SYTL2 ADSS ATP5I CBX6 MAGEH1 MAP2K4 PAK1 UBE2N LCP2 RPL26 RPL11 CERS6 VPS35 RAB2A PSMD12 TNFAIP8L3 GLO1 CDK17 PRKAR1A BASP1 VDAC2 VSTM2A RASGRP1 SERINC3 SOD1 DUSP4 PDZRN4 AES ATP6V1F STX1A PPM1A AAMDC ADD2 PRUNE2 CAMK2D GPRC5B KCNAB1 TUBB4B ROBO2 HCN1 PPP1CB HNRNPH2 UBE2M PHYHIPL PSMD8 SNCB ATPAF1 GRIN3A EPS15 TUBA1B RPL15 ADAM23 TBCA ATP6V1G1 SLC7A2 PNMAL1 DMTN REPS2 TGOLN2 MRPL15 RP11-632C17__A.1 NFIA RPH3A SYT13 DNM3 STRAP APP NXPH2 PTPRN2 EPDR1 CHP1 CDH8 SPTBN1 COPS8 MPPED1 STXBP1 WDR47 NOS2 TSPYL1 JUND ARF3 MYEOV2 SYT11 DNAJC6 KIF21A TRAPPC1 PI4KA ARHGAP35 THY1 DYNLL2 SYN1 CISD1 ISOC1 KLC1 RCAN2 SCN1B TMA7 SSBP3 ATP6V1B2 DPP6 RP11-20I23.1 STMN1 HDLBP CSDE1 ADARB2 PTPRN EPAS1 CDKN2AIPNL GOT2 PITPNA LAMP5 TSPAN7 EDF1 ATP6AP2 STMN2 RGS4 BNIP3 COX7B BSN COX4I1 ETV1 PNMA2 BCL11B TCEB1 NCOA4 UBB COPS7A TPPP MPC2 SLC9A6 SLC26A1 LYSMD2 MTATP6P1 EIF1 CHMP5 SERTM1 CDS1 TSC22D1 RBX1 EFHD2 IL6R SP9 ENO1 YWHAB ITM2B GAPDH OLFM1 SLC7A1 ATP2B2 ATP6V0C ZFAND5 SPCS2 WBSCR17 NUTF2 VAT1L CAPNS1 MAPRE3 GPX4 NDRG4 PEBP1 DPYSL2 DNAJC5 C14ORF132 COPRS MAGED1 VSTM2L PRKCE EIF4G2 CD59 SCG2 SYNGR1 MAF NRIP3 CETN2 NDUFB11 FAM163B SYT3 PDP1 PGM2L1 MAFB CHRDL1 CDC42SE2 CNP VSNL1 GNB1 RAB27B DNAJB6 SCN1A MAPK1 ENO2 PTMA ACTG1 FASN FUNDC1 SERF2 PDGFD SEPW1 PRKCB NTNG1 PTPRT MARCKSL1 DYNLRB1 TMEM132D CAPZA2 GYG1 ADRB3 SLC7A8 ATP1B2 TMEM14A NDUFB5 CLIP3 SPOCK2 MORF4L2 PAM PIP5K1B COX5B ID2 ANO3 TRPC3 HSPA4 GABARAPL2 PEG10 BEX5 PGK1 SKAP2 ALDOA ARF5 TUBB MBOAT7 GTF2H2C_2\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "SV2C-expressing interneuron" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MT-CO3 MT-ND4 MT-ND3 MT-CO2 CXCL14 RELN SYT1 SLC6A1 CLSTN1 MT-CO1 MT-ND1 PGM2L1 MT-ATP6 CADM2 SNAP25 ELAVL4 RTN3 MTRNR2L12 GABRA1 MAPK1 NCAM2 SPOCK3 SYT4 ATP1B1 MT-CYB ADARB2 APLP2 JUND CNR1 TSPYL1 MTRNR2L1 CALM2 YWHAB FXYD6 SCN1A GAD2 EIF1 NR1I3 EPHA6 KCNIP1 SPOCK1 SCD5 AES OCIAD1 DNER PTCHD4 PPM1A STMN3 PHYHIPL FAT1 PPP2R2B FAIM2 CBLN4 PRNP SST MT-ND5 MT-ND2 GDI1 RP11-111M22.2 RAB3IP SCOC EPB41L3 NPTXR UBE2M BCAT1 GAD1 AP1S2 ASAP1 ITM2B ACTR10 DNAJB9 YWHAG FGF12 ARL4C HSP90AA1 HSP90AB1 ELAVL2 RPL26 TMEM14A PPP2CB EIF4A2 FSTL5 PLD5 SSBP3 PPA1 SLC2A1 SYNJ1 HNRNPH2 PRKCE GNAQ CLIP3 DCC FXYD7 MTRNR2L8 IQSEC1 STXBP1 ADD2 VAMP2 WASL ASAP2 GRIN2A RPH3A HBQ1 CX3CL1 TMOD2 UBE2V2 PLD3 COL5A2 RPL35 PPP3CA CERS6 PCDH17 DNAJA1 SLITRK1 EFR3A TCEAL3 SERPINI1 NARS PTPRM HMGB1P8 MYL6 SARAF KIF5A MAP2K4 PAFAH1B2 RAB11FIP5 LANCL1 THY1 GOLIM4 DUSP1 MAP1B STAG3 EGFR MT-ND4L KCNC2 ACTB TCEAL2 PLCB1 GUCY1B3 DKK3 SLC25A4 RAB1A PGRMC1 NAP1L3 GJD2 PSMD8 NREP NMNAT2 CTNNB1 PROX1 IDI1 PIP5K1B TEFM CALM1 ROBO3 ERBB4 CDS1 SYNGR1 NMBR NAP1L2 PARM1 CHN1 MARCKSL1 SKAP2 SALL1 RGS12 TMEM35 PPP2R4 DYNLL2 EIF4G2 NUAK1 AKAP12 QDPR DNAJC5 FGF2 HN1 COTL1 SNCA MAGED1 ATP1B2 SEZ6L FTL REEP5 D4S234E ASIC4 APP SCG2 PTPRN2 TM2D3 SERINC1 MTATP6P1 ATP2B4 YWHAZ PRKCB SYTL2 LMO3 NDNF WDR47 NSF IDS ARL6IP5 ROBO2 BEX1 PFKP MED10 NFE2L1 REEP2 ATP6V0C STX1B NXPH1 TRPC3 QKI ZFAND5 CDH22 SLC38A1 RHBDD2 GPRC5B SLC1A2 MAPRE2 BIRC5 ARL8B MAP1LC3A NXPH2 ARL6IP1 NAA38 RP11-20I23.1 RPS27A CYC1 ITM2A RLIM STMN1 TOX NHP2L1 MTUS1 CDK5R1 HEG1 TUBA1B C12ORF49 BCL11B SRM GSKIP TSC22D1 SLC25A22 TUBB2A ZNF385D PPP1R9B SERPINF1 RNF11 KCNAB1 SUMO2 GNB1 JAKMIP1 PRUNE2 DDR2 RAN KIFAP3 SCN3B NR2F2 SLC9A6 MPPED1 CAP2 STMN4 TERF2IP FKBP1A REPS2 CLTC SOD1 GPR158 BSCL2 MTRNR2L6 DYNLRB1 NGRN HILPDA B2M RPL13A MIF GTF2H2C_2 AC244489.1 PCDHA9 PCDHA10 PCDHA4 PCDHAC1 PCDHGA6 PCDHGA5 PCDHGA10\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "SV2C-expressing interneuron" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MT-ND4 MT-CO3 MT-CO2 MTRNR2L12 MTRNR2L1 SYT1 MT-CYB MT-CO1 SLC6A1 SNAP25 ATP1B1 MT-ND3 MT-ATP6 MTRNR2L8 KIT CRIM1 FXYD6 MT-ND1 TMSB4X RAB3C HAPLN1 PGM2L1 CLIP3 SCOC PPP2CB HCN1 SYT11 PCBP1 CLU PRIM1 SPOCK1 RTN1 AP2M1 ARL4C VSNL1 CALM1 DNER PSAP MT-ND2 CREG2 MAP1B GAD2 CALM2 NDRG4 GDI1 MTRNR2L6 KCNAB1 GDE1 TSPAN7 COL25A1 GAP43 CAMK2N2 RAD23B CDK5R2 YWHAZ PSMD8 ATG101 CDK14 RASL11B EEF1A2 PJA2 CEND1 ASNA1 DYNC1I1 SYN1 TLN2 NPPC PIN1 ATP1B2 RPS10 SELT ANK1 NAPA LGI3 FAIM2 LHX6 HDLBP TUBA1B RHOB ACTG1 ARL6IP1 RTN4 STX1B RP11-632C17__A.1 PEA15 MED31 QKI GABRA1 DCLK1 C7ORF50 PLD3 ADSS THY1 EGFR SPOCK2 STUB1 BCL11B ELAVL4 MGST1 PNMA2 MAP1A PROX1 ID2 GUCY1B3 MACROD1 RPS6 GLUL CALN1 VSTM2L EYA4 CNTN1 GPM6A KIF1A SLC9A6 BASP1 SFRP1 APBB1 DNAJA1 APP EIF1 HNRNPA1P40 ATP2B2 PPP3CB MAPK1 ITM2B RP11-175B9.2 EIF1AX NDUFA13 HSP90AA1 TSPYL1 TMTC1 FTL PDP1 SV2C RASSF8 TCEAL3 FAM163B ERBB4 ZNF536 ARL6IP5 SSBP3 CHMP4B KCTD12 CD24 MTUS1 MAFB RPL10A CTSD YWHAH CHL1 NPTXR IDI1 UBB GOLIM4 PPP3CA KLHL5 CAP2 PNKD KCNH5 ATP5I TNFAIP8L3 MT-ND4L SLC7A8 NECAB1 CDH13 KCNC2 DHCR24 BSN PPP2R2B ARL8B KIF21A TAC1 LIMK1 ZNF385D RP11-111M22.2 NSF SYTL2 RAB3B B2M PCDHAC1 PCDHA9 PCDHA10 PCDHA4 TBC1D15 DNAJC21\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "SV2C-expressing interneuron" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MT-CO1 MT-CO3 MT-ATP6 MTATP6P1 MT-ND3 SYT1 MT-ND4 MT-CO2 MT-CYB RELN DNER MT-ND2 ATP1B1 MT-ND1 KIT RTN1 GAD2 MTRNR2L12 CALM2 SNAP25 SERPINI1 SERINC1 MTRNR2L1 GDI1 ERBB4 CALM1 MT-ND5 RTN4 PSAP HSP90AB1 HSP90AA1 SLC6A1 PRNP PRKCB STMN2 GRIN1 CYFIP2 MTRNR2L6 NUDT21 SPOCK1 GRIN2A CBLN4 RTN3 TRPC3 PRKAR1A MAP1B PNKP FXYD6 PPIA LAMP5 DKK3 CADM2 TERF2IP MTRNR2L8 ZFAND5 PTCHD4 CLPTM1 TGOLN2 MAP1LC3B NAPB MDH1 PREPL SH3BGRL3 PPP3R1 TUBB2A CKB CSDE1 IGF1 SERPINE2 SARAF CALM3 IDS CX3CL1 FGF12 GABRA1 NPTN TOX2 ATP1A1 NAP1L2 PEBP1 POMP ATP6V0E2 PHPT1 CD99L2 PRKAR1B CDK14 CXCL14 SCG2 CLTC RPL15 SYN1 MT-ND4L PGRMC1 CLSTN1 ASIC4 UBB ZMAT2 LMBR1 HS3ST5 MAP4 KIF1A ATP6V1B2 B3GALT2 GAPDH KCNC2 ATP2A2 GNAQ SLC7A8 EYA4 VAMP2 TSPAN7 COX6A1 PKM AP1S2 BSN RPL31 APP TMEM59L LMO4 NPTXR NGRN B2M ATP6V0C RP11-20I23.1 MTND1P23 LSM4 UQCR11 HPRT1 NXPH2 DPY19L1 NDUFB8 TPGS2 RPH3A TMOD2 PDGFD SERINC3 STMN3 VPS35 EPHB6 TUBA1B NDRG3 SKP1 CADM3 SUMO2 SSBP3 DOCK10 STX1B FKBP8 CHCHD2 PCBP1 ZNF536 FAM3C RAB3B SCOC NCAM2 SPCS2 SYT4 ARF1 RAB4A GRINA FBXO2 ITGA6 LMBRD2 EFHD2 MAPK8IP2 CCDC85B LDHB GABARAPL2 PAFAH1B2 SCN1A CCK COA3 TCEA2 SLC6A17 COX7B DRAP1 PPP2CB GNG12 TIMP2 GPR158 RCAN2 TUBA1A EIF4A2 NDUFS5 NRIP3 TOX CLDND1 ETS2 RAB1A ARX PTMA FAM174A SV2C RND3 SEMA4G RPS6 MFN2 MAP2K2 RAD23B RAB3C RCAN3 CAP2 COX4I1 COX7C PRDX5 TOX3 PEG10 NRCAM RPL37A KCNAB2 KCNAB1 CYCS EDIL3 RPL35 DNM3 MYL6B ATP6AP1 BASP1 MAP7D2 UQCRC1 CMAS UQCRC2 MAF MAP1LC3A SNRPN EIF1AX EPB41L3 ENSA PNMA2 SUSD4 PDGFRA SEPW1 TSPYL1 MAGEH1 BEX2 SYT5 TMEM120A UBA52 DYNLL2 NDNF REEP5 CTSD CTNND2 NGEF NR1I3 WBSCR17 WLS RPS27A CD59 SYT13 ATP6V0B ITM2C UBA1 SHARPIN ATP6V1A PRUNE2 UBC HMP19 PPP1CB RNF11 SNCA GPM6A CDK5R1 PGAM1 NFIA HMGCR CITED2 AP2B1 KLHL12 DPYSL2 PCMT1 CDK5 INSIG1 ARL8B MPI PID1 SYNGR3 TMSB10 MRPS21 CRIM1 NAP1L3 LAP3 CFL1 ATP6V1C1 IQCK GJD2 FABP5 PIN1 MAP2K1 RPL39 GUCY1B3 TRIM37 OAZ1 LMO2 GRIN3A JAKMIP1 FAT1 RPL13 DPP6 DLX1 APLP1 GAD1 CACNG3 ARL4C LMO3 FAM127A RPL12 RPL38 RAB2A EPS8 SCAMP5 HOPX CACNB1 SLC39A10 SUMO3 TOMM70A LDB2 NDUFA2 GYG1 GSTO1 TMA7 DIRAS2 CREG2 NDFIP2 RHEB GHITM CDK5R2 HMGCS1 EIF4G2 ACTG1 NDUFV1 CACNA2D2 LIPT2 STXBP1 UBE2V2 HINT1 RRM2B ATP2B2 FTL SIRPA LYSMD2 GABARAPL1 WBP2 CAMK2N2 ADRB3 SNCB TPI1 HK1 ROBO2 PRKCE HDAC1 PSMD2 PCP4L1 VEGFA VSTM2L ARF5 NSF APOLD1 GABARAP RPL36A MIF TUBB RPL21\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "SV2C-expressing interneuron" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: SNAP25 SYT1 ATP1B1 NDFIP1 RAB3B MT-ND4 CLSTN1 TMSB4X GRIN2A KIT GPM6A TAC1 PTCHD4 DNER PSAP NXPH2 SCN1A MAP1B CNTN1 RAB3C SCD5 FTH1 KCNC2 ACTB THY1 TBC1D15 DNAJC21 DNM3 VPS35 CTNND2 FAIM2 BNIP3 PRNP SIRPA HSP90AB1 LAMP5 ARHGAP29 RTN3 STXBP1 LUZP2 HSP90AA1 ARL4C KIF21A VAMP2 SPARC TOX GOLIM4 PPP2CA ERBB4 ARL6IP1 TSPYL1 DPYSL2 EIF1AX NEGR1 PRKACB SEPT1 HTR2A PDP1 RTN4 APP CTBP1 PGK1 GRIK1 APLP2 ITM2C ALDOC CDH13 RHBDD2 STRAP NAP1L3 ATP2A2 MT-CO1 PPP2CB VSNL1 NIPA1 MTRNR2L1 GRIN1 NR1I3 ATP1B2 RCAN2 DCC SNRPN PSD3 ELAVL2 MYO16 CPLX2 NME1 MTPN CALM1 HPRT1 WLS MAP1A GPR126 SUMO2 MT-CO3 CBX6 CAMK2G CLSTN2 RPH3A CD59 CCK GBE1 OAZ1 GTF2B BSG SRM NUDT21 LIMK1 RPL32 OCIAD1 SLC8A2 GHITM RPL12 GDI1 PEBP1 FXYD7 NDN PPP3CA PHPT1 PXDC1 TM2D3 MT-ND3 KCNH5 C2ORF80 DPP6 SEZ6L2 ARHGDIA MAFB TMCC3 FAM19A2 EIF1 WASL NFIA DNAJC6 TUBB2A RPL3 SERINC1 MED31 EFR3A DKK3 MYEOV2 SPOCK2 FSCN1 MT-ATP6 PLD3 MYL12B SPOCK1 TOMM70A PNMAL1 PRKCB PPDPF PINK1 GAD2 ATP5J2 TCEB1 COX6A1 ITM2B BAI2 RAB1A STMND1 SLC9A6 GABRA1 TENM3 NXPH1 STMN1 YWHAB PREX2 RAB6B NDUFA4 QKI KCNAB2 LPPR4 NGFRAP1 NAP1L2 RPL41 SYN2 SLC6A1 OXR1 BANF1 CALM3 SLC24A2 SYN1 NECAB1 EGR4 DPY30 NCBP2-AS2 CLIP3 LAMTOR1 LGALS1 SV2C GUK1 BCL11B HTRA1 SLITRK1 C1QL1 OPCML LGI3 YWHAH FSTL5 GRIP2 SERF2 PJA2 SPP1 SH3GL2 SLC25A22 CLTC CRIP2 UQCRC1 NDFIP2 PLCB1 PKM EXTL2 TRHDE IL6R YWHAZ GAPDH NREP MTUS1 LRP2 PCP4L1 CPNE8 PTPRN2 CD99L2 SLC12A5 GUCY1B3 PRKCE SPARCL1 REPS2 TPI1 TMSB4XP4 NHP2L1 TSPAN7 FER1L4 ENO2 MAP2K4 BSN MTHFS SULT4A1 CNP LANCL1 NACC2 GAD1 SELT SLC38A1 SARAF DNAJB6 SOX2 NDRG4 KLC2 CDK5R1 MIR3916 TMEM35 PGD PPIA MLF2 SCN2B SEZ6 CAP2 C11ORF31 PIP5K1B TCEAL7 RTN1 PPP3CB LINC00086 MT-CO2 WBP11 SLC7A8 PIK3R1 SCOC DDX3YP1 DNAJC5 LAMTOR2 BEX2 NSF RP11-219A15.1 ATP6V0C RNASEK-C17ORF49 SERINC3 RP11-20I23.1 BSCL2 GABARAP MTRNR2L6 APOLD1 MIF RPL36A AC244489.1 PCDHGA10 PCDHGA6 PCDHGA5 SYTL2 ZNF385D\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "SV2C-expressing interneuron" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MT-CO3 MT-ND4 MT-CO1 MT-CO2 MT-ATP6 MT-ND1 MT-CYB VAMP2 MT-ND2 DNER SNAP25 MTRNR2L1 MT-ND3 TSC22D1 PMEPA1 ARF3 RASGRF1 ACTG1 ARL6IP1 ITGB5 PTCHD4 SV2C SYT1 HSP90AA1 PCSK1N SMAP2 DPP6 PRNP RP11-111M22.2 RAB3C SPOCK1 CDH13 RTN1 DSTN LMBR1 SNAP91 ATP1B2 PI4KA PSMC1 ERBB4 PTPRN LAMTOR5 GABRA1 UQCRC1 PTMA SLC8A2 ATP1A1 TMEM130 CAMK2D ARPP19 OLFM1 PFN2 SLC22A17 MTATP6P1 WBP2 GPR158 PSD3 APLP1 NCDN PDCD5 ANKRD20A11P HMGCR CLU SLC9A6 RANBP1 CISD1 MRFAP1 PPP3CB RPH3A VSTM2L RTN3 DPYSL2 SUB1 B2M ENO2 RPL32 PRKCE LL0XNC01-16G2.1 PDGFD KCNH5 THY1 BEX4 CERS6 COL6A2 GAD2 CXCL14 MTRNR2L12 MAF TSPYL1 NDUFA4 B3GALT2 PREPL PDGFRA SPOCK2 SELT LINGO1 PEBP1 GRIK1 PHYHIPL AES NDFIP2 NMUR1 NPTN PNMA2 TOX PROX1 GPM6A HIGD1A SPOCK3 CRISPLD2 DPF3 PKM TERF2IP MBP PTPRS DNAJA1 SCN3B RELN NR1I3 KIF21A FAIM2 POLR2I PLCB1 VSNL1 ETV1 CPNE8 TAGLN3 METTL7A KIT SOX4 NFIA TMEM179B NDUFB2 OAZ1 OCIAD1 CLTC GRIN2A MAP7D1 RPL35 SHARPIN SERTM1 CNTN1 SYT11 INSIG1 KCNC2 TMEM14A EPS8 RPL26 NTNG1 MAFB MGST3 GPRC5B TMSB4X VCAN CLTB AAMDC PPP1CB TUBB2A FAM163B SSBP3 RAB11A ARL4C ATP1B1 NDRG4 ARL6IP5 MTRNR2L6 OR6D1P IDS RP11-219A15.1 ESCO2 SYTL2 RAB3B ZNF385D DNAJC21 TBC1D15 PLEKHD1 AC244489.1 TUBD1 HNRNPA1P40\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "SV2C-expressing interneuron" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: SNAP25 GAPDH SLC6A1 OR6D1P CFH OR7E117P RAB3IP RAB3B SYTL2 BIRC5 PTPRS YWHAG SAMM50 KCNAB2 NDUFAF2 PDE1C FTL GAD1 TCEA2 NRGN SCN1B NTNG1 GABARAPL1 DCTN1 PJA2 GNB1 ATP1B1 RP11-111M22.2 KLHL5 ARX FRZB CLTC SUB1 PKM TMA7 CALM3 COX7A1 ATP1A3 ATP5B SEPW1 TAC1 PLCD1 TMEM151A MTX3 GRIK1 RPL38 IDH3A CALM2 SLC12A5 TMEM59L SPARC STMN1 ANXA6 RPL32 RPL36A RTN4 PRKCE MAP2K1 THY1 KIF21A LMO2 OAZ1 MAP1LC3A EID1 ATP5I PLD3 PIP5K1B RPS15 FBXL21 APEH PPP3CB RGS4 QDPR PNMA1 VSTM2A AP2M1 RPL37A KIF5A RSL24D1 ATP1A1 CDC37 TBC1D15 DNAJC21 IDS MIF RPL7 PCDHGA6 HNRNPA1P40\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "SV2C-expressing interneuron" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MTRNR2L1 MT-CO1 CFH MT-CYB SLC6A1 SYT1 SNAP25 NPTXR ZNF385D GRIN2A MT-ND4 SPOCK1 ERBB4 ATP1B1 MTRNR2L6 CBLN4 PTCHD4 HSP90AB1 TPT1 STXBP1 TBCB SKP1 MTRNR2L12 DNER MT-ND1 ATP1B2 RELN ATP1A3 PNMA2 TMSB4X PTPRM TBC1D15 COL5A2 TSPAN7 LUZP2 EIF4A2 CNR1 ABHD8 PCGF1 KIFAP3 PRDX3 PEBP1 DOCK10 PREX2 B3GNT1 HNRNPA1P40 PRNP CERS6 RPL8 NR2F2 REEP5 MPPED1 PPIA ANO3 ALCAM YWHAH COX7A1 GABRA1 ARF3 FSTL5 KCNC2 SPDL1 HNRNPH2 ARL6IP1 CMPK1 WDR47 LINC00087 ARL4C NAP1L5 KMO NEGR1 CHCHD2 PRKCB DLX1 PCDH17 ATP5G2 GNAQ PITHD1 BEX1 KCNAB1 PDP1 CTBP1 ATP6V0E2 PPA1 C6ORF1 MED10 RAB27B NDRG4 SLC25A11 RHBDD2 RPS3AP12 RP11-111M22.2 ATP5E GPM6A SST SERPINI1 CAMKK2 CXXC4 SYT17 THYN1 MT-ND4L HMP19 CAMK2G OCIAD1 MT-ND3 MORF4L1 PRKCQ NAPB IDI1 SUCLA2 CXCL14 RPS27A DPYSL2 MT-CO3 PRDX1 CPLX3 GNB1 ARL8A EDNRB CRIM1 EPS15 QKI DCLK1 RPL35 GAD2 TIMP2 RHEB SNRPN BASP1 ATP5A1 MTX3 COX7B CKS2 MTRNR2L8 RP11-219A15.1 RP11-20I23.1 ATP6V0C AC244489.1 RPL7 BSCL2 IDS GTF2H2C_2\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "SV2C-expressing interneuron" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MTRNR2L1 SYT1 MT-CO1 MTRNR2L12 MT-ND4 RAB3B SLC6A1 KIT HSP90AA1 MT-CO3 GAD1 GRIN2A KCNC2 MTRNR2L6 CLU MT-ND2 GABRA1 ATP1B1 DNER CDK14 SNAP25 CLIP3 CALM1 RAB3C PTCHD4 PREPL CALM2 PLCB1 SPOCK1 ATP1A1 RAB3IP CFH SCN1A MT-CO2 APLP2 HSPA8 STMN1 CADM2 UBB KLC1 SPOCK2 CDH13 YWHAB GAPDH DPY19L1 ZNF536 SLC24A2 MT-CYB GNB1 PKM APP DPP6 NRIP3 CLSTN1 MBP ELAVL2 STMN3 ITM2C NR1I3 DNAJC21 OXR1 RTN4 RPH3A PMEPA1 ADARB2 DYNC1I1 FSTL5 MT-ND1 GHITM RTN3 PPP3CB EIF4A2 CREG2 CA2 MRAS RPL32 VSTM2L FGF12 PCSK1N SYT4 ALDOC SLC7A8 MT-ATP6 SOD1 ATP5I SLC25A4 LMBR1 CYFIP2 THY1 PNMAL1 BIRC5 PINK1 PSMD12 PID1 RAB6B PEBP1 RPS15 DOCK10 CXCL14 SERPINI1 RPL3 PI4KA VDAC1 GPM6A PHYHIPL RTN1 CDK5R1 PRDX2 INPP5F RPS28 RPL31 CBLN4 TUBA1B GRINA CKB ATP2B2 RP11-111M22.2 SSBP3 SSTR2 DLX1 MAP1A CNTNAP5 TCEAL2 MORF4L2 ENO2 ATP5E GAD2 COX4I1 TMEM65 GOLIM4 PGK1 TMEM59L TSPYL1 PCDHA4 PCDHA9 IDS TF ESCO2 NHP2L1 HAPLN4 VAMP2 CACNA2D2 EID1 SEZ6L2 NDUFB8 VAPB ATP6V0D1 SRP14 STMN4 SEMA4G EIF1 POMP KAL1 RAB2A FKBP8 MORF4L1 KCNAB3 CFL1 ARF1 FAM163B RPL13 TMEM120A SYN2 LRRC69 NDFIP1 YAF2 LINC01314 GRIN1 LUZP2 CLPTM1 DEXI COX6C TERF2IP ENSA TMEM132D SYNGR3 SERPINE2 FLOT2 NDUFA13 UBE2V2 SYT11 MAP1LC3A LAMP5 TMEM151A DNM3 GRIP2 TMX4 IGF1 ATP6V0B MAP4 PRKCB SCN2B EIF4G2 ADAM23 DNAJB6 GDI1 QKI PIP5K1B SRP9 FXYD6 REEP5 TXN AES CEND1 HMGCS1 FNDC4 COX6A1 SNRPN PCDHGA5 DNAJA1 HSP90AB1 CAB39 TEFM SMIM13 TOMM7 GUCY1B3 NXPH2 PJA2 UCHL1 RPL6 SUMO3 LMO4 FAM174A MAPRE2 RPL10A ZBTB20 SPHKAP ATXN10 SAP18 GRIN3A SLC25A6 RHEB EFHD2 SYNJ1 CORO2B HILPDA APBB1 BCL11B NMNAT2 NXPH1 MARCKSL1 SV2C PEF1 COX7B PTGES3 TMSB10 TGOLN2 RGS12 SELT TENM3 PRNP TMEM117 MT-ND4L KCNH5 ADRB3 ARL6IP1 PGM2L1 RAB11FIP5 DNAJC6 UBE2F POLR2K RPL26L1 PFDN1 RAB5C HDDC2 ANXA6 SKP1 ARL4C NDUFAF2 RPS2 ATP1A3 PDP1 PTPRM NFE2L1 PAM ATP6V0E2 CYB5R3 APLP1 SCN1B SCOC RGS8 ARFGAP2 SERINC1 ID2 NIPA1 STMN2 CAP2 SLC6A17 COPG1 PLD3 OR6D1P PEX5L KLC2 PRKCE SYNGR1 B3GALT2 HINT1 NDUFS5 PEA15 NELL2 RPL8 SYNPR REEP2 DDN TAGLN3 CD99L2 ATP6V1B2 RBX1 CLTC PTPRT CHL1 MED10 CNR1 PRKACB KIAA1211 NAP1L3 NFIA TCEB2 TPGS2 UQCRH RPS27A PPP2CA MAP7D2 NPM1P30 TMEM35 NGFRAP1 PPP2CB KCNAB2 TOMM20 RFK MFSD6 RUNX2 H2AFZ RPL35 PTMA OCIAD1 INA MAGEH1 TPT1 CAPNS1 CNRIP1 NDUFB7 FAIM2 RPL38 SLC9A6 RAB4A ATP9A RPS19BP1 HCN1 PTPRS OPN3 ATP6AP1 PCP4L1 ABHD8 CTSD RLIM CBX6 IDI1 TSPAN7 MAPK1 VCAN DYNLL2 MFN2 PGAM1 ITFG1 GOT1 RPL13A TMA7 PPP2R2B SERINC3 C14ORF2 CDK5 PAK1 NAP1L2 TMOD2 CYCS SQLE GNAQ UBQLN2 TMSB4X LRP1B NEGR1 DUSP4 ARL8B RAB3A UQCRB CIAPIN1 PSAP VSTM2A DUSP1 DCLK1 MT-ND3 ACTB YJEFN3 SULT4A1 RPL37A GPX1 ARF5 RPL21 ATP6V0C RP11-20I23.1 NGRN PSMB3 RPL7 GABARAP GTF2H2C_2 RPL12 AC244489.1 RPS26\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "SV2C-expressing interneuron" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: DNER MT-CO3 KIT CALM1 PPP2R1A SCN1A MT-ND1 FXYD6 PRNP CALM2 SNAP25 SALL2 MT-ND3 SLC6A1 CTSD FAM174A RTN1 B2M PTMA RPH3A CLU OPCML MAPRE2 MTND1P23 ATP6V1G1 ZNF385D VSTM2L ATP5C1 MRPS21 ACTG1 CDH13 STMN3 RELN TAGLN3 SYN2 CMPK1 PCP4L1 SYT1 MT-ND4 DPP6 PTPRN PIP5K1B TRPC3 NGFRAP1 ACLY RPL26 CAB39 COPRS MTRNR2L1 DMTN ARL4C PCGF1 ARF3 RAB3IP ATP1B1 BCKDHB RASSF8 SLC7A8 ARX ERBB4 SNCB TUBA1B PCBP1 CAP2 PTPRT RPL39 RASGRF1 SLC32A1 PRUNE2 PEBP1 THY1 PRKACB CD99L2 BEX4 BNIP3 ACTB MT-CO2 PTCHD4 TSPAN7 CBLN4 PREPL GAD2 DRAP1 FAT1 ALDOC SLC8A2 PRPS1 PCMT1 GRIK1 GRIN2A CCK YWHAG NMNAT2 MAF BSCL2 VAMP2 PITPNA NDFIP1 RPL13 NAP1L2 MT-ND2 PPP3CA TPI1 TOX3 MAGED1 SNCA CHST11 UBA52 NFIA VDAC2 SLC22A17 REEP5 CNTNAP5 NEGR1 DLX6 MAPK1 STRAP PDP1 EIF4A2 TMEM230 NDRG3 FABP6 PPP3R1 JUND FGF12 KCNH5 CKB FBXW11 STMN4 ATP5A1 SV2C RNF11 SPOCK2 RTN3 COA4 SARAF B3GALT2 PSAP ELAVL2 NAPB GDI1 FTH1 SPOCK1 PTPRM MTRNR2L12 KCNC2 TIMP3 PDGFD HDDC2 SERPINE2 ENOPH1 SFRP1 MAP1A CAMK2G GABARAPL1 KIF21A TCEB2 MLLT11 HNRNPH2 SPRN KCNAB1 FAIM2 PGRMC1 MT-ATP6 EIF1AX BIRC5 MTRNR2L8 SOX2 MTRNR2L6 ESCO2 NGRN RP11-20I23.1 NSF ATP6V0C PCDHGA10 PCDHGA5 PCDHGA6 CFH\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "SV2C-expressing interneuron" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: RELN MT-CO3 MT-CO1 MT-ATP6 MT-CO2 SYT1 GAD2 DNER MT-ND4 MTRNR2L1 CALM3 MT-ND3 SLC6A1 HSP90AB1 EIF4A2 TSPYL1 YWHAG ZNF385D ARL4C TERF2IP AP1S2 KIT RAB3C PEBP1 EYA4 RPS28 PI4KA CALM1 GAD1 CBLN4 NXPH1 TSPYL4 ITM2B MT-CYB NDUFC1 TSC22D1 SERINC1 PHYHIPL TM2D3 MTRNR2L6 GDI1 VAMP2 PTMA TSPAN7 PLCB1 MT-ND2 PARM1 PNMA2 GABRA5 NAP1L3 RAB11A PKM CERS6 MLF2 ATP1B1 YBEY MTRNR2L12 YWHAZ KIF1A RPL31 TMSB4X ACTG1 SARAF CALM2 SELT GABPB1 SERPINE2 ATP6V1B2 FAIM2 NUAK1 OPA1 TUBB2A MRFAP1 ATP2A2 DNAJB6 MAP1B MAP4 ATP1A3 BCAT1 KLC1 SLC10A4 ERBB4 NR2F2 APLP1 BNIP3 RTN3 SCD5 APP SPOCK1 MAP2K4 NPTN PRKACB BCL11B MACROD1 TMEM59L MTATP6P1 RTN1 ALK FNDC4 TOX3 ARL6IP1 ACTB MORF4L1 DOCK10 RAB7A NDUFA11 CDS1 NDUFA5 CNTN1 PGRMC1 AQP7 SPRYD3 PHYHIP CXCL14 PROX1 SNRPN PGM2L1 PET100 PPP2CB GUCY1B3 RPL26 JAKMIP1 ELAVL2 TMX4 PTPRT MORF4L2 GPX4 SLC9A6 SEPW1 CEND1 CLIP3 TRPC3 PEX5L BEX1 HCN1 PNMA1 TBCB SKP1 KIF3C PLD3 GRIN2A NDUFB11 JUND SPOCK2 TMEM14A C8ORF4 TOLLIP SNCB HNRNPH2 UBC PJA2 PGD TUBB4B OST4 PRDX3 MMD ATP6V1A GABARAP CLU SLC12A5 FSTL5 EIF4G2 RASGRF1 SYNGR1 ARL8A REPS2 RP11-195F19.5 TUBA1B LYNX1 FAT3 MED10 APBB1 CX3CL1 ATP2B4 OAZ1 FKBP4 ACTR10 CADM2 ARL6IP5 ATRN PAFAH1B2 FXYD6 PINK1 FLOT2 UBE2D2 ROBO2 SCG2 YWHAB FTH1 DISC1 ETV5 C1QBP HMGCS1 NAPB SCAMP5 C1ORF233 TUBB2B KIF5A ELAVL4 PMEPA1 RPL13A ZFAND5 TBCA PCDH17 UBE2QL1 CAP2 CTBP1 LIN7B PRKCB GPR158 EIF1 KCNC2 BCAP31 PPP3CA RTN4 CDC42SE2 RPL41 CHST11 PSAP SELM ATP1B2 LMO4 SFRP1 PTPRM D4S234E VDAC1 LMBRD2 MT-ND1 ENO2 SOD1 COL5A2 UBE2F MTRNR2L8 EID1 MIR6723 NDRG4 PRNP SV2C WBSCR17 KCNH5 KAL1 ASCL1 TMEM35 AES ATP5F1 PTPRN2 RPH3A SCN3B INA TOMM20 SUB1 SPOCK3 SST ENOPH1 NBL1 CPLX2 PIP5K1B ATP6V1C1 RPL39 GDA RGS12 PLCB2 C9ORF16 SEC61G SSTR1 NEGR1 PGK1 PPP1CB KCTD12 FGF12 STX1B CYCS MAGEH1 COX6B1 MT-ND5 GLO1 YWHAH GPM6A MAPKAPK2 MIEN1 RPS4X SYN1 NDFIP1 SOX2 PREPL LINGO1 CCDC115 EIF1AX ENO1 OPCML ASAP1 RAB6A NPTXR RP11-1396O13.2 ATP5O KCNAB1 SDCBP NGRN IDS ALDOA ATP6V0C RP11-219A15.1 RP11-20I23.1 RPL6 RPL21 PCDHGA10 PCDHGA6 PCDHGA5 ARFGAP2\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "SV2C-expressing interneuron" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MTRNR2L1 SYT1 MT-CO1 MT-ND1 KIT SLC6A1 MTRNR2L6 APLP2 GRIK1 MT-ND4 TBC1D15 GAD2 MT-CO2 PMEPA1 SCD5 MTRNR2L12 PRKACB EIF1 MT-CO3 SERINC3 EFR3A SCN1A SLC24A2 RPS27A NDUFB4 NRIP3 ATP1B1 LDHC PGRMC1 ERBB4 MT-ND2 DYNLRB1 GAD1 GRIN2A ATP1B2 RPL13A CAMK2G CALM1 CXCL14 RTN1 RTN3 PTCHD4 ITGB5 FAIM2 HSP90AA1 SYT4 DNER RP11-219A15.1 BIRC5 MAP4 ATP1A1 TMX4 CALM3 PRKAR1A SLC1A2 MT-ND3 NMNAT2 EGFR BCL11B CA2 DGUOK TMOD2 BCAT1 RGS12 SPHKAP RNF208 SERPINI1 SCAMP5 OST4 PCDHAC1 ATP6V1G1 PPP3CB UBB PARP14 ATRN GABRA1 GRIN3A PTPRM ARL2BP ITM2B UQCRB HOMER1 CLU SLC38A1 TOMM7 CRIM1 NIPA1 ATP5J PSAP PNMA2 USP5 TGOLN2 SLITRK1 CMAS RPL31 PIP4K2A PSMD12 CSDE1 TCEAL3 NDFIP2 NDUFS5 SRP14 NDUFA4 RP11-111M22.2 LAMA3 GUCY1A3 GUK1 ELMO1 NRCAM AHNAK2 COX7A2L VPS35 YWHAZ JUND PGM2L1 RPL39 RPL37A KLC1 SPRYD3 ATP6V1C1 KCNC2 DUSP1 PDGFRA FTH1 C1QL2 NXPH2 CLTC NTN4 DLC1 NELL2 RPL26 PNMAL2 STXBP1 MT-CYB SNAP91 VDAC2 NDFIP1 NAP1L5 UCHL1 MBP TERF2IP SELT PTMA MAP1B FSTL5 RPL38 BRICD5 VAMP2 SERF2 PLCB1 EIF4A2 LRRIQ1 PPP2R2B CNP MT-ND5 RPH3A HGFAC UQCRH TMEM35 PRNP PREPL ATP5J2 GRIN1 PTPRT SYNPR CALM2 UQCRFS1 ADAM23 ANXA7 PITHD1 UBE2V2 MT-ATP6 NARS GNG12 TNFAIP8L3 TRPC3 AES SLC7A1 FKBP8 VDAC3 TUBB2A HRK CCK RAB2A QKI ADD2 CPLX3 RPL21 C18ORF32 RPL17-C18ORF32 ATP6V1G2 CFH\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "SV2C-expressing interneuron" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: RELN CXCL14 MT-CO1 MT-ND4 GAD2 MT-CO2 MT-CO3 VAMP2 YWHAG KCNC2 DNER PREPL MTRNR2L1 GPM6A RTN4 CNTN1 MTRNR2L12 ACTB GAD1 RASGRF1 GRIN2A RTN1 CDK14 NMBR RPL23A ZNF536 HNRNPH2 ATP5A1 HSD17B14 SNAP25 DLX6 TGOLN2 DYNLL2 CHL1 KIF1A NAP1L3 MTRNR2L8 SLC12A5 UBE2QL1 SERINC1 APLP2 GNAQ DNAJB6 SYT1 TERF2IP PCDH17 COX17 EIF1AX CEND1 ITM2B SLC6A1 ATP2B4 COX7C FAM163B RPL37A SERPINI1 NDUFA4 PGM2L1 YWHAB MT-ND2 NME1 MAPRE2 ERBB4 CLU RAB3C EGFR PCBP1 TSC22D1 CITED2 C8ORF4 ZNF385D FXYD6 MTRNR2L6 CISD1 CFL2 PLCB1 WASL CLIP3 GRIK1 CCDC115 WBSCR17 PFDN4 ALK TUBB2A WASF1 PCMT1 TRPC3 ATP6V0E2 QKI PLD3 LINC00086 FAT1 PNMA1 SYN1 MT-ND1 SYN2 FOS SNRNP25 ATP6V1A SNCB RPL15 PSAP DPYSL2 TSPYL1 HMP19 GABARAP COL9A1 ARL4C MAFB SV2C CADM2 RPS6 DUSP1 SLC22A17 PRNP PEBP1 IRS4 CNR1 ENO2 CDK5 PRKAR1A MT-CYB ASAP1 SLC39A10 SAMM50 RAB7A WFS1 DYNLL1 NRCAM NUTF2 ATP2A2 RGS12 NRIP3 PTMA YWHAQ FGF12 EDF1 NAPB MARCKSL1 NDRG4 TPI1 UQCR11 PGRMC1 BAG4 TMEM65 PRKCE C1D DDR2 WSB2 AVPR1A CALM1 FXYD7 PTPRS GDI1 NBL1 ARPP19 PCSK1N GPX4 ATP6V1E1 AHNAK ZFAND5 MGST3 LMBRD2 MZT2B FKBP1A CDK17 BASP1 MAP1B SOD1 FAM134A SCG2 SUMO2 BCL11B HRK CPLX3 FSTL5 FAM131B LPPR4 BMP2 SERTM1 NRSN2 RAB11A TUBA1A ELAVL4 CD63 RP11-111M22.2 AES ATP5G2 TMA7 PCP4L1 MYL6B KIT ITM2C MAGEH1 SPOCK3 APLP1 NR2F2 DNAJC5 TENM1 RASSF8 SERINC3 RPS15 COX7A2 NSF MORF4L1 IGF1 SARAF ETV5 SPOCK1 ACTR10 WBP2 FBXL16 TMSB10 RPH3A CCDC85B RAB6B PRPS1 MANBAL KCNAB2 UBE2N RLIM PFN1 ATP1A1 TBCA NAP1L5 AP2S1 ABHD14A STXBP1 GSK3A LAGE3 PBXIP1 NDUFAB1 MRFAP1 GNG3 BEX4 PSMD8 SULT4A1 MORF4L2 NCAM2 DOCK10 CBLN4 PCDHGA10 SNX10 NDUFB1 ARL6IP1 PPP2CB C1QBP C14ORF2 PPP2CA DYNC1I1 EPB41L3 NDUFB8 MPPED1 CCDC25 MT-ND3 FTL DNM3 ATP2B2 VGF NAT8L NDN REEP5 MPC2 NUAK1 SST MFN2 RPL7 ARL2BP SUB1 SH3GL2 UQCRB TBC1D15 C11ORF31 ATP6V0C C18ORF32 IDS ARFGAP2 RP11-20I23.1 RPL17-C18ORF32 ALDOA TUBB3 RPL21\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "SV2C-expressing interneuron" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MT-ND3 GRIN2A MT-ND2 DNER MT-ATP6 MT-ND1 MT-CO1 SLC6A1 CXCL14 PREPL RTN1 RELN MT-ND4 MT-CO3 SLC7A5 MTRNR2L12 GDI1 RPH3A VAMP2 ATP1B1 COL5A2 SYT1 SCD5 SERPINE2 MT-CYB GNAQ PTMA APP SPOCK1 MTATP6P1 PCBP1 MT-CO2 DPP6 PHYHIPL ATP6AP2 RGS12 RP11-111M22.2 CFH NR1I3 SYNGR1 SPOCK3 MAP2K1 CKB CALM3 MTX3 GRIN1 FXYD7 SST ENO2 GNG3 FTL MAP1B MYL12B PRKCB TRPC3 NDRG4 ATP1A3 BEX1 FABP3 BSCL2 BCL11B ZFHX4 NPNT OLFM2 ATP6V1B2 SYNGR3 RTN4 SNAP91 ERBB4 PNMA2 GAD2 PPP2R4 DLX6 NRCAM PPP2CA HMGCR PGRMC1 PREX2 ASCL1 MAP7D1 TSPYL4 ITGA6 CCDC115 PLP1 ITM2B DUSP6 ALCAM SV2C GHITM DBNDD1 CAMK2G STMN1 SLC6A17 BNIP3 ADSS AEBP1 YWHAG GDA SLC25A48 PGM2L1 CAMK4 GAD1 MTRNR2L1 RAB6B SNAP25 PLCB1 SNRPN RLIM KLC1 C11ORF31 HSP90AA1 RPL35 NUAK1 PRKCE PROX1 UBE2N DOCK10 ATP5A1 ATP5G1 ELAVL2 TMSB4X SSBP3 ATP2B4 GPR158 ARL6IP5 FSCN1 RCAN3 SDF2L1 DYNLL1 NR2F2 CADM2 ATP2B2 MTRNR2L8 GRIN3A PFKP DYNLL2 SERINC1 RPL12 PCDH17 TCEAL5 COL21A1 TAGLN3 RTN3 RAB11A DNAJC6 IDS RP11-219A15.1 RPL13A NSF PTGDS RPL41 NGRN HNRNPA1P40 PCDHGA5 PCDHGA10 PCDHGA6 DNAJC21 TBC1D15\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "SV2C-expressing interneuron" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MT-ND4 MT-ND2 MT-CO2 MT-CO1 MT-ND1 MT-CYB SYT1 MTRNR2L1 MT-ND3 MT-CO3 MT-ATP6 RAB3B APP ARL4C SCN3B FSTL5 NRCAM SCN1A MTATP6P1 ZNF385D ATP1B1 CALM1 PREPL CPLX2 NFIA MAPRE3 RTN3 OR6D1P BCL11B PJA2 UQCRB MED10 NECAB1 OCIAD1 FAIM2 MT-ND5 GRIP2 SNAP25 PTCHD4 CLU ARHGDIG RPS28 TMA7 TERF2IP PDGFD RPH3A TMEM130 B3GALT2 ARL4D TOMM20 YWHAG ZFAND5 UQCRQ BRICD5 HILPDA CADM3 ALS2CR12 SCG2 CLSTN1 ACTB EGFR C11ORF31 RPS4X MTRNR2L8 YAF2 RABAC1 MT-ND4L KCNAB2 CALM2 GRIK1 SPOCK1 EXTL2 EYA4 TENM1 BEX5 MTCH1 PPP2CA DPYSL2 YWHAZ DKK3 INA STK39 MRPS21 MTPN YWHAB SARAF TMEM255A PFN1 GOLIM4 ATP5G3 CITED2 CDR2L SULF2 TOMM34 PLS3 CTBP1 PEA15 PRKACB DYNC1I1 NARS RPL23A MAP1LC3A DCTN3 ABHD14A RTN4 CD99L2 BIRC5 CA8 DPP6 KIF21A GLO1 SLC6A1 OPRM1 PLAC8L1 TXNDC17 PCMT1 ATP5G2 RPS26 DNM3 SERINC1 VAMP2 RPL21 COL25A1 GAD2 PPP3CB SLC39A10 PDGFRA PEF1 PTPRS TOX SCN2B RPS15 SEZ6L2 RNA5-8SP6 COX6C GPM6A HDLBP CLTC CD24 CRTAC1 MTRNR2L12 VWA1 BASP1 MIR6723 PCDHB2 IDH3A RPL32 FAM219A PTN PPP2CB SERPINI1 SERF2 LAMP5 AEBP1 SQLE HMGB1P35 CALM3 KIT DNAJB6 MYL6B SLC1A2 PLD3 AES PSMD2 TUBB4B ALDOA ANKRD18A PPP3R1 MIF PCDHGA6 DNAJC21 TBC1D15 SYTL2 TF\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "SV2C-expressing interneuron" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: SYT1 MT-ND4 MT-CO2 SNAP25 MT-CO3 DNER CCK SLC6A1 HSP90AB1 KIT MT-CO1 YWHAB RPS28 GAD1 RTN1 GAPDH ATP1B1 CKB GRIK1 HSP90AA1 FXYD6 MT-ND2 EIF4G2 PRKAR1A TUBB2A CALM2 RAB3B RPL37A NXPH1 MRPS21 GRIN1 PPIA CREG2 GDI1 ARL4C STXBP1 APP NDUFA4 CLSTN1 GUCY1B3 NAP1L3 EIF4A2 PEBP1 TMSB4X RPL26 DPP6 RPL41 CXCL14 PSAP RPL32 SV2C ACTB PRNP GAD2 GABRA1 ENO2 RHOB RPL13 GPM6A RTN3 RPS12 ITM2C AES SEPW1 NAPB TSC22D1 NPTXR RPS4X SERPINI1 PKM PPP2R1A MGST3 YWHAH ITM2B RPS27A ATP2B2 RP11-111M22.2 SCD5 KIF1A GNG3 PHYHIPL TMSB10 CDH13 VSNL1 ARL6IP1 TRPC3 AP2M1 SLC22A17 RTN4 RPS15 YWHAG TOMM7 SARAF SCN2B FABP5 NCBP2-AS2 NAA38 GPX4 CALM1 RPL11 DCTN1 SPOCK2 SPOCK1 GLO1 NGEF SYT4 BCL11B ALDOA B2M DLL3 TUBA4A DYNLL2 PGRMC1 GNB1 MAGED1 SCN1A ATP5J COX7C PCMT1 TRIM37 RPL38 APLP2 RASGRF1 POLR2I CRTAC1 SPRYD3 USP5 RELN ATP6V1E1 PMEPA1 ATP6V0B EGFL7 CD63 ANXA7 RAB3IP TCEAL3 ATP1A1 PRDX2 OCIAD1 ARF5 MAGED2 MAFB UCHL1 NFIA PCDHA9 PGK1 PTPRN COX4I1 CYB5R3 TSPAN7 RSL24D1 ZBTB20 COX6A1 KCNJ10 KLHL12 RRM2B POMP TERF2IP TOMM34 JUND PDP1 CRABP1 KCNAB1 RPL10A BRK1 ATP1A3 NAP1L2 WASF1 ROBO2 EYA4 FAM134A CLU UQCR11 TUBB4B PRKCB GRIN2A TUBA1B ID2 SPARCL1 CYP2R1 AP2S1 STMN1 SLC9A6 RPL13A RGS12 CBLN4 SERINC1 GHITM UBC CLIP3 ARF3 C1D PTCHD4 AP1S2 ATP5H PFN2 HMGCR EID1 SYT11 SCN1B RPL31 UBE2E3 MAP1B TMA7 KCNC2 ATP6AP2 SYTL2 RP11-20I23.1 ATP6V0C KCNA2 MT-CYB KCNIP1 OPA1 HSPA8 SNCG CTU2 ITFG1 CYFIP2 SNRNP25 CPLX2 PRDX5 PGAM1 VAMP2 EIF1 VSTM2A CCDC115 BAD STX1B MPC2 EGFR C11ORF31 COX6C PPP1CB NGRN RPL7 B3GALT2 PLD3 VAT1L NDUFB3 CRYAB SCD WBP2 CADM2 NDUFB4 DDR2 NDRG4 LAMP5 FAT1 SUB1 UBE2V2 NDUFA11 STOM LIMK1 MAP1LC3A MRAS RP11-632C17__A.1 ADAM23 CPLX3 C14ORF2 CBX6 CFL2 CHGB BSN FSTL5 MANBAL CALM3 GPR88 RNF11 EHD3 MAL2 ARL6IP5 CACNG3 FAM3C C10ORF10 PRDX1 SEZ6L2 PCSK1N TCEAL7 GPR158 NEFM GSTT1 RHEB MTRNR2L8 MTRNR2L1 SOX2 CFL1 CAB39 TPGS2 PTPRM IFI6 SRM FAM127A RAB6B DYNLL1 NIPA1 MT2A SERF2 C2ORF47 ZBTB18 BEX2 BEND5 NDUFB8 SCAMP5 TGOLN2 AP2B1 NRCAM ASPDH NAP1L5 FAIM2 DNAJC6 RPS3A SLC7A2 SOD1 MBP MT-ND1 PEA15 RBX1 LUZP2 ATP5I SULT4A1 XAF1 PHB THY1 B3GNT1 PRKACB MAPK1 LINC00116 ATP5G3 CCDC25 PRDX3 PGD HS3ST5 PNKD C1QL1 MRPL55 PNMA1 PLCB1 TMEM130 FTH1 CEND1 SYNJ1 SPCS2 MFSD6 RPL39 C1ORF52 CYCS CAP2 MDH2 SSTR2 CDC37 MYL6 KCNF1 SLC25A4 TAGLN3 GSKIP RPS19BP1 ACOT7 NCALD VDAC2 GSTP1 MRPL52 SLC24A2 MZT2B GABARAPL1 ENO1 GOT2 RPH3A COX7A2L SUMO3 RHOA ANO3 NDUFS5 LDHB C6ORF1 MTRNR2L12 CMPK1 CETN2 ACLY LAP3 RPL18A CIAPIN1 ATP1B2 DNM3 SRP9 TCEB2 KCNMB4 YAF2 ARPC4 WLS ZFAND5 COX6B1 WBP11 PTGES3 LIG1 SLC25A22 FBXL16 PIK3C2G AKAP12 DCC CRKL UQCRB UBE2N NDUFA5 MAPRE3 ATP5O EPDR1 SELT MTCH1 C12ORF57 MAP1LC3B RPL21 ABHD14A TPI1 FABP3 USMG5 LDOC1 PINK1 BEX1 EFHD2 FSCN1 STMN2 VPS35 DGUOK OAZ1 FLOT2 PAPLN FTL PIP5K1B ZNF536 TUBA1A FXYD7 SFRP1 NELL2 AP3S1 ADARB2 SUCLA2 CD24 PREPL UQCRC1 CERS6 SNN CLIC4 KCNH5 GMFB CD99L2 PPP2CA GRIP2 MT-ATP6 CISD1 ATP5J2 STRAP MAP2K1 ZMAT2 BEX4 SNAP91 COX7A2 HNRNPH2 RPL23A ATP6V1C1 SLC22A4 TMEM59L RASGRP1 KIF5A RCAN2 TMEM147 PSMC5 NR2F2 NDRG3 DSTN DIRAS1 OXR1 UBL4A EIF1AX HAPLN1 MPPED1 MT-ND3 RAB6A PPP2CB CXXC4 RPL17 ATP5G1 SCN4B TCEB1 KLC1 SRP14 MLF2 FUNDC1 EFR3A CABP1 COX5A LMO3 FBXW11 APEH CDK17 PNMA2 ETS2 SYN2 PPP1R7 AP1S1 BIRC5 CDC42SE2 TRIM36 SYNGR1 UBE2M NMNAT2 RHBDD2 MRPL33 ATP6V1F ASCL1 GRINA CDK14 SPTBN1 POLR2M TUBB4A CDH8 ISCU RPL17-C18ORF32 DOCK10 GOT1 ATP6V1G2 RNASEK-C17ORF49 NSF BSCL2 RPL3 GABARAP EPHB6 IDS NDUFA13 TUBB RP11-219A15.1 CAPZA2 MIF AC244489.1 PCDHGA6 PCDHGA5 PCDHGA10 ARFGAP2\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "SV2C-expressing interneuron" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: RAB3B TMSB4X SNAP25 CALM3 RAB3IP SYT1 GAD2 MT-CO1 FAIM2 ITM2C RTN3 NECAB1 MT-CO3 RPL37A SLC6A1 RPL26 OR6D1P RPL39 COL25A1 ARFGAP2 CADM3 DCLK1 SERINC1 RPL41 CIAPIN1 BSCL2 ATP6V0E2 RPS15 MT-ND2 GRIK1 RTN4 RPS28 SPOCK1 PTCHD4 FTH1 GAD1 NDUFV1 GRIN3A EYA4 TMEM130 ARL6IP1 RPL36A STMN1 MRPS21 NRIP3 CALM2 MT-CO2 ARF3 DNER EPDR1 SLC7A8 IDS RPL23A CDH13 TBCA KIT DKK3 SYTL2 KIF5A RPS6 RAB3A UQCRB GUCY1B3 TIMP2 USMG5 SLC39A10 ARHGAP35 PET100 HOMER1 HCN1 MANBAL SNRPN ITFG1 MYL6 SUMO1 NDUFB8 KLHL5 TKT VPS35 CLU ANXA7 NDUFB1 JUNB TMEM255A RPS27A RHEB NDUFA1 STXBP1 APLP2 RPL31 HSP90AB1 ARPP19 RP13-492C18.2 CFH GRIN1 EDF1 MAGED1 GNB1 NUDT21 DIRAS2 COX7A2 OPCML CCK GAPDH KIF21A ATP1A3 FSTL5 PRKCB ATP5J2 ARX ATP1B1 LMBRD2 NCEH1 ATP11C COA3 COX7C EBF4 YWHAZ PRKAR1B TMA7 NTN4 WBSCR17 SNCB ENSA SLC12A5 FAT3 PDCD5 MAP2K1 EIF1B TGOLN2 SCD5 SDF2L1 NFIA MAPK8IP2 PKM TUBA1A RTN1 SYNGR3 SCN3B NAPB RPL10A ATP5H SV2C ITM2B BEX4 MMP24-AS1 PRKCE MAP1B HS3ST2 HMP19 ARL6IP5 GDI1 LHX6 RPL21 LAMTOR2 SARAF COX4I1 PPP2R2C ARL4C CPNE8 MZT1 B3GALT2 HMGCS1 GRIP2 ATRN QKI CRH MAPRE2 CHMP4B PNMA2 MAFB ATP6V1A SLC22A17 PHYHIP GRIN2A MAP2K4 MYEOV2 FKBP4 CNR1 WDR47 PTPRN UBC TUBA4A ATP2A2 SYT13 RAB3C LMO4 NXPH1 SPARCL1 INSIG1 D4S234E ELMO1 C19ORF10 SLC24A3 LDHB FAM127A KRAS FAM163B KLC1 RPL32 CHCHD2 RP11-111M22.2 VSTM2A MAF PRKAR1A TMSB10 FAM174A MT-CYB QDPR ACTB NUDT4 AZIN1 TMEM59L FXYD6 MT-ND3 TCEA2 PTPRT PSMA7 LMBR1 SLC9A6 ATP6V0B POLR2M VSNL1 RPS3A MT-ND4 EIF1 UQCRC2 RPL18A SIGIRR ATP1A1 SPOCK2 MT-ATP6 NDFIP1 TM2D3 APLP1 ERBB4 CD99L2 KIF1A COX8A YWHAG NDUFA4 AP2B1 RP11-20I23.1 GABARAP C18ORF32 RPL6 ATP6V0C RPL17-C18ORF32 NSF GTF2H2C_2 LAMA2 GPR98 HNRNPA1P40\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "SV2C-expressing interneuron" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MT-CO3 SYT1 MT-ND3 MT-CO1 MT-ND4 MTRNR2L1 ZNF385D RELN SCG2 CALM1 GRIN2A MT-ND1 RPL41 SPOCK1 MT-CYB CXCL14 PNMA2 SLC6A1 HSP90AA1 PLCB1 PRNP MT-ND2 PRKCB ACTB REEP5 FSTL5 CNTN1 CAPZB SLC12A5 CDK5R1 RTN3 HSP90AB1 CNR1 MT-ND5 MT-CO2 STMN2 KIF21A COL25A1 DNAJB6 ATP5I QKI GAD2 SEZ6L GPM6A STMN4 MT-ATP6 CALM2 MTRNR2L6 DNAJC21 TBC1D15 USP5 NDUFS5 RPL21 SPOCK3 MAP1LC3A ARL8A RPH3A CDC42SE2 CLTC B3GALT2 ALDOC FBXL16 STMN1 SYT17 RTN1 ELAVL4 EIF4G2 TCEAL7 CKB HS3ST5 LMBRD2 CADM2 OXR1 SCN7A POLR2K AP3S1 RAB6C-AS1 TPD52 RGS12 PEBP1 PGM2L1 YWHAZ GAD1 YWHAB OPA1 MAP2K4 MT-ND4L TAF7L GABRA1 B2M RHBDD2 ALCAM IDS TALDO1 IQCK BCAS2 NR2F2 RTN4 RPL26 GDI1 TIMP2 ISCA1 RHOA FAIM2 KCNAB1 ROBO2 ACTR6 NAPB PRIM1 HSPB8 GLRA3 ATP1B2 SEZ6 TRIM36 PTCHD4 EPS15 GAPDH GRIK1 SNAP25 PTMA SSTR1 ATP6V0E2 COL5A2 SLC39A10 MAPK1 RNF11 PDGFD ARHGAP35 ARL8B FLOT2 KAL1 LAMP5 RAB3C VSTM2A CRIM1 HMP19 ENO2 MAPRE3 C8ORF4 TMSB10 GRINA COX4I1 MED10 PPP3CA ATP5O SCOC SLC7A8 CCDC154 TMX4 ACTG1 NDRG4 ITM2B NDNF LUZP2 PDE1C PRUNE2 KIF1A PDP1 ADAMTS6 ATP1B1 CLTA TUBA1B KIAA1211 TM2D3 STXBP1 PFN2 MTRNR2L12 AES CTGF PGRMC1 SYT3 LANCL1 NXPH2 TERF2IP HSPA4 SCN1A CNIH3 DKK3 PRELID1 NFE2L1 ATP6V0D1 ATP5G3 MRPL55 SERINC3 SCN2B MTATP6P1 SYTL2 RAB3B GABARAP BSCL2 RP11-20I23.1 PTPN20A ATP6V0C NR1I3\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "SV2C-expressing interneuron" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MT-CO1 RELN MT-CO3 SLC6A1 SST MT-CO2 CXCL14 RAB3B CRH CCK RTN3 PRNP MT-ND2 CLSTN1 CLU ERBB4 CBLN4 MT-CYB DNER RTN1 GAD2 APP MT-ND1 SPOCK3 ATP2B2 MT-ND3 GRIK1 FSTL5 NAT8L EPHB6 MT-ND4 SNAP25 PCDH17 HSP90AB1 EIF4A2 MTRNR2L1 ARL4C PTPRN H2AFZ ITFG1 ATP1B1 GOT2 NPTXR DPYSL2 SERINC1 ARL6IP1 MAP1B PPP2R2C SPOCK1 HSP90AA1 TSPAN7 KIF1A NDRG4 ITM2B BIRC5 ATP6V0C DNAJC5 SLC12A5 WLS SNX10 PJA2 ATP1A3 MYL12B CAP2 RPS27A SYT1 PSAP SPCS2 RPL36A TOLLIP TMX4 GAPDH SYNJ1 PET100 MTRNR2L12 PRKAR1A CXXC4 RPL35 FXYD6 PCDHA4 OXR1 GABRA1 RP11-20I23.1 SERPINI1 STMN3 CALM1 SCD5 SSTR1 PRKCB RPH3A HAPLN4 RAB3C TMEM59L ATP1A1 RPL41 ZFAND4 RPS28 PPM1A STXBP1 GPX4 CHL1 GNB1 ELAVL2 PCDH19 SPTBN1 VSTM2A YJEFN3 DOCK10 C1ORF56 NCAM2 STMN1 PEBP1 MORF4L2 MT-ATP6 SLC38A1 TPGS2 CD63 FGF12 ZNF385D RNASEK-C17ORF49 TCEAL7 C6ORF141 PKM MYL6B PNMA1 VAMP2 SYT11 SERINC3 CRKL ATP6V1C1 SMS LYNX1 RPL37A GRINA ZNF536 CYP26B1 CST3 SYT17 CABP1 JUND NHP2 OPA1 MAGEH1 PREPL NSF SQLE PPP1CB CADM3 SGCD DRAP1 KCNC2 NDUFA4L2 PEG10 TMSB4X SCN1A MRPL37 CAMK2D GPR88 CA11 SCOC KAL1 MRAS MAPK1 SCN2B RAN ATP5E SLC35B1 NGFRAP1 NPAS3 ATP2B4 GAD1 RSL24D1 TEX2 TSPYL1 CALM3 NDUFA2 APLP2 ROBO2 GLIS3 COX7B DKK3 CA4 CNTROB ARPP19 USMG5 WBP11 TBCA TRPT1 COL5A2 ATP6V1A PFN2 C1QBP PGK1 STMN2 DIRAS1 CNTNAP5 DNAJB6 DUSP4 NMBR RNF11 SCN1B MPPED1 PDCD5 LINC00087 TXN ASCL1 CD59 FARSA PINK1 THYN1 GRIP2 CYFIP2 RPL39 ALCAM MTRNR2L8 NAPB SNN NHP2L1 RAB6B PTMA ATP6V1G1 RAB11A NNAT RPL13A LYSMD2 RTN4 SYNGR1 ATXN10 EIF4G2 PSMD2 AKR1C2 COX6B1 ACOT7 NRCAM AP2M1 MYO1B ATP5C1 SCAMP5 AES ATP5G2 FSCN1 DCLK1 RABAC1 MAP7D1 NOV GLRA2 KLC1 SAMM50 SERPINE2 SEZ6L2 SEMA5A RPS2 ARL6IP5 NPTN TCEAL3 CTSD NAP1L3 ATP6V1B2 CKB PRKACB PARM1 KCNC3 CISD1 KCNAB2 TIMP2 CDKN2D UBE2N OLA1 SV2C BEX2 RPS6 SCN3B CHN1 CTBP1 TPPP EGFR MAGED2 CDC37 FAIM2 DSTN CAMK4 MRPL55 PHYHIP UQCRC1 UBA52 PTPRS HGFAC SLC9A6 ACTR1A PRKCE HMGCS1 SNCA HMGCR CNR1 RAP1GDS1 PLD3 UQCR10 ACTR10 OPCML C1ORF52 GUCY1A3 ATP2A2 FBXL16 MAGED1 SOD1 NDUFA13 TMEM179B UROS NDUFC2 MED31 GRIN2A FNDC4 RPL8 D4S234E UBA1 GSKIP RPL17 SLC7A8 WBP2 SCG2 FKBP8 CTNNB1 RPL26 SULT4A1 GDI1 SYT4 PSENEN FAM127A STRAP YWHAG DGKG CAB39 CBX6 NECAB1 NBL1 UQCRQ SOX9 WBSCR17 MAP7D2 CDH8 GPM6A WDR47 HTR2A FTL B3GNT1 RPL23A PRELID1 CX3CL1 UBE2E3 AP2B1 ETFB TMOD2 DLL3 SYT13 SYNGR3 RPL6 EHD3 FIBP GNAQ SYN2 FAM174A OR6D1P NGRN CFH BSCL2 IDS ATP6V1G2 TBC1D15\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "SV2C-expressing interneuron" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MTRNR2L12 MT-ND4 MT-CO3 MT-CO1 MT-ND1 SLC6A1 MT-CO2 MT-ND3 RAB3B MT-ATP6 MTRNR2L1 MT3 YWHAB ATP1B1 CNTN1 HSP90AA1 SYN1 MT-ND2 PGK1 MBP ARL6IP1 CPLX3 ATP2A2 PTGDS CDK14 NECAB1 SYT1 RELN SNAP25 TPT1 KIT RAB3C SPOCK1 PRKCB GNB1 PTPRM RAD23B CTNNA2 SERF2 PTPRT LMBRD2 ERBB4 SYNJ1 AC244489.1 ZNF536 CALM1 FTH1 AP1S2 RPL11 COX4I1 MKX PREPL ATP5G3 RPL37A FSCN1 SPOCK2 AVPR1A STMN2 ARL6IP5 RAB3IP SEPW1 NHP2L1 HSP90AB1 APLP1 GDI1 NGFRAP1 RPL31 STUB1 SNCB PCDH17 SERINC1 KIF21A FXYD6 APP VAMP2 TSC22D1 UBQLN2 TP53TG5 PPP3CB CADM2 RGCC ATP5G2 AZGP1 OR6D1P CXCL14 CALM3 FIS1 RPL39 RAB3A TCEA2 EGFR RPS5 MAFB SV2C UBA52 ATP5F1 CKB TMOD2 NPTN GPM6A C16ORF13 NUAK1 HHATL GOLIM4 ELMO1 ROBO2 FAM107B GLO1 CHMP4B YWHAH RPL3 BNIP3 UQCRHL ALDOC MT-CYB NAP1L3 RNF11 TMEM258 SLC12A5 CMAS ATP6V1A TMEM144 THBS2 MTPN GPRC5B PAQR8 FAT1 ATP6V0E2 CCDC154 PACSIN1 PGRMC1 DPYSL2 SULT4A1 CLMN PSAP MAP1B SRP14 CRIM1 PI4KA COX5A KCNAB1 NDFIP2 GABRA1 C12ORF49 DNER GTF3A MT-ND4L KLC1 RPS4X CRYAB PKM CNP CPLX2 PDP1 CLTA TERF2IP CCK RTN4 LDHB CNDP1 NR1I3 SSBP3 SERPINI1 NDRG4 KCNMB4 DNAJB6 STX1B YWHAG ARL4C MTRNR2L6 COX5B YIPF3 PLCB1 ELAVL4 ITM2C RAB1A DYNLRB1 CFH RPL41 MBOAT7 RPL6 RPL21 ABCA8\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "SV2C-expressing interneuron" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MT-CO3 MT-CO1 MT-CO2 SYT1 RAB3B DNER MTRNR2L12 MT-CYB MT-ND2 MTRNR2L1 APP MT-ND1 SPOCK1 MT-ND3 RTN3 SARAF SLC12A5 NRIP3 VAMP2 GAD2 DNAJC21 SLC6A1 SV2C KIT RP11-111M22.2 RAB3IP PGAM1 ACTB MT-ATP6 ITFG1 TMSB4X APLP1 OR6D1P SPOCK2 KLC1 SLC9A6 ARF1 PTPRT ATP1B2 SERINC1 LAMP5 PCDHA4 KCNA2 ATP1B1 RAP2A UCHL1 CNTN1 MT-ND4 FTH1 NDFIP1 NFE2L1 RPL15 WBP2 SYN2 STXBP1 TMA7 NPTXR HSP90AA1 SCN1A RP11-219A15.1 YWHAZ CREG2 NRCAM TMOD2 ATP6V1A MYRIP SPHKAP SCAMP5 PHYHIPL NMNAT2 ATP1A1 NPTN UBQLN2 ATP6V0B CNTROB ATP6AP2 CALM1 C14ORF132 PAFAH1B2 BEX4 ITM2B PMEPA1 ACACB ENO1 C10ORF10 NGFRAP1 PRNP LPPR4 MAPRE2 HMGCR PTMA CLTB RLIM TPI1 NAP1L5 COTL1 RPL10A SDCBP PPP2R2C ATP2B2 SELT PGRMC1 COX6B1 PREX2 SGCZ SPRYD3 CAMK2G CLU ZNF385A GNB1 CCK RAB7A NAP1L2 THY1 LANCL1 HMGCS1 NEK7 CDK5R2 SNRPN RPS19BP1 NBL1 SH3RF1 TSC22D1 DUSP6 PJA2 LAMTOR5 PPP3CA GOT2 PREPL LRRIQ1 BCL11B MAP1B NDRG3 CA8 PEBP1 HCN1 GLUL CADM2 SPCS2 SLC22A17 UBE2QL1 GRIN2A DNAJB9 DMTN EGFL6 RAB3A RPL38 SLITRK1 GTF3A RTN4 CPNE8 C1QBP VAMP1 GPX4 FXYD6 ARL6IP1 ATP11C KCNAB2 NFIA OST4 NDUFA11 ATP5B CD99L2 FTL YJEFN3 PKM PROX1 DNAJB6 RAB4A NAPB ATP2A2 PLCB1 MORF4L1 ZFAND5 STX1B PNMA2 CPLX1 CRIM1 SSTR2 SKP1 UQCR10 ACP1 MBP IDH3A PRKACB GNG3 MTND1P23 GMFB LUZP2 KCNH5 THSD7A MGST3 MTRNR2L6 SLC6A17 RAB3C SRP14 ATP6AP1 SFRP1 PTCHD4 B3GALT2 CAP2 EIF4A2 RNF11 MTATP6P1 C1ORF52 HNRNPA1P40 BIRC5 NGRN RPL41 C18ORF32 B2M PGK1 RPL17-C18ORF32 RPL21 SYTL2 NR1I3\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "SV2C-expressing interneuron" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: SCG2 ATP1B1 CKB GAD2 ERBB4 WASF1 CBLN4 SCD5 TGOLN2 CAPZA2 AP2M1 ITM2B MYO1B BEX2 MT-CO2 IDS THY1 SPOCK1 RPL37A RELN MRFAP1 SLC6A1 PCDH17 KCNC2 DNER PPP3R1 OXR1 TBC1D15 SNAP25 UBQLN2 RPH3A ASIC4 TRPC3 GDE1 UBA1 NGFRAP1 GRINA TIMP2 CLSTN1 ACTR10 SPOCK2 REEP5 SFRP1 RNF11 CBX6 FAIM2 ATP2A2 H2AFZ AP1S2 CABP1 RPL21 NDUFA1 PRKCB PTPRS KLC1 UBC HSPE1 ENO2 SPOCK3 HTR2A IDI1 FTH1 NRSN2 PREX2 VSTM2A SLC2A1 SRP14 ARHGAP42 IPCEF1 RTN3 KAL1 SERPINI1 SYN1 UCHL1 RAN B3GALT2 APP CLIP2 ACLY CTSD EIF4A2 NHP2L1 NMBR NDFIP2 TOMM20 TOX3 ITM2C PTPRT RAB3B SLC1A2 GABARAPL1 CADM2 ACTB CAPZB MTRNR2L8 BCL11B NEGR1 CLPTM1 FAT1 NCAM2 CMPK1 DCLK1 CALM3 LPPR4 FXYD6 GLUL CTNNB1 EDF1 PODXL YWHAG HS6ST3 DDR2 KCNIP1 EIF1AX RGS12 PRNP TCEAL7 MT-ATP6 RPL13 SYTL2 SYT17 RP11-166O4.4 FBXL16 SYT1 ATP6V0B SV2C RTN4 KCNA2 PLD3 MT-CO1 TSPAN7 TUBB2A CDHR1 COX5B EIF1 GRIN1 NFE2L1 ATP6V1B2 ARL6IP1 ARL8B KIF21A MTRNR2L12 RPL39 OLFM1 SPRYD3 PTPRM BEX4 C1D PSAP CNR1 PPP2CB ACTG1 SLC7A8 COX7C MTX3 PTMA ETFB BTBD10 CHMP5 NXPH1 ATRN SCN1A ATP6AP1 FBXL15 RPL35 RPL31 RPL41 NFIA RPL36A ALDOA RPS28\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "SV2C-expressing interneuron" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MT-CO3 MT-CO1 MT-ND4 MT-ND3 MT-CO2 MT-ATP6 SYT1 MTATP6P1 MTRNR2L1 DNER MT-ND1 MT-ND2 SNAP25 MT-CYB IDS KIT MTRNR2L6 ATP1B1 ARL4C SCD5 TUBA1B NDRG4 TMSB4X SCG2 ITFG1 YWHAZ EIF4A2 RELN MTRNR2L12 SERPINE2 GDI1 PRKCB TSC22D1 NDUFA13 RPL38 ATP5E CALM3 RTN1 MTRNR2L8 POMP PNMAL1 RPS12 TUBA1A CKB PHYHIP MT-ND4L OLA1 PPA1 NDUFA1 SLC6A1 NUDT21 APLP2 NAP1L2 GRIN1 DPP6 TBCA VAMP2 PPM1A NDFIP1 USMG5 PPP2R1A MORF4L1 RPL37A STMN2 SERP2 ATP5I PEBP1 CALM2 INA PREPL SPOCK1 DSTN CADM2 RAB6A ABRACL PTCHD4 SNRPN GAD1 OLFM1 ATP1A1 ENO2 GAPDH RTN3 MT-ND5 COPE NUTF2 UBL4A LAMTOR1 COX7C CTNNB1 TMEM35 HPX SDCBP SH3GL2 SCAMP5 MANBAL RNF11 TPI1 GOT1 UQCRC1 COPRS ARF5 BEX1 C8ORF4 YWHAG RPL31 ATP6V0E2 PPIA SNX3 ARFGAP2 KCNAB1 OCIAD1 ATP6V0D1 HSD17B14 ARF1 TERF2IP PGAM1 TOLLIP MAP1LC3B KCNAB2 PROX1 SNX10 MDH2 CPLX3 RPL8 RAB3C ATP6V0B APLP1 CA2 VAMP1 BEX4 PRPS1 SERF2 HSP90AB1 UBB GPCPD1 CDH8 GNAQ TPPP TM2D3 POLR2K BRK1 AVPR1A PSMB5 PGM2L1 PRIM1 MORF4L2 NDUFC2 ZFHX4 DPYSL2 RPL3 MAP7D1 DYNLRB1 RFK SLC22A17 MDH1 CXCL14 GNB1 ATP5B IQSEC1 ENC1 CTNNA2 RPL26 PTPRN2 SLC25A22 MRPS21 PHYHIPL C6ORF1 DYNLL2 STUB1 GFRA2 LDHB ARF3 RTN4 RANBP1 SRD5A1 FTL NRIP3 C11ORF31 NTHL1 SUMO2 ELAVL4 ITM2B UQCRH PJA2 MZT2B ETV1 PAM ATP6V1G1 HSPE1 ACLY ERBB4 SST RAB3A RAB3B RPL41 OAZ1 CHMP5 RGS12 PTMA COL6A2 PSMD8 TMEM141 OXR1 CISD1 CCK NGFRAP1 TPGS2 CSDE1 ATP5G2 UQCRB EFR3A MAPRE2 GRIN2A SYNGR1 NDUFS5 STMN1 FBXW11 CHCHD2 EIF1 SYN1 CHN1 APP PCP4L1 EIF1B RPS10 CLSTN2 SELT ITM2C GUK1 DNAJB6 TUBB6 DMTN ARL6IP5 PAFAH1B2 CPE PRDX3 DUSP1 PDP1 SNCB CYC1 TCEB2 BTBD1 MAPKAPK2 RPL15 ENO1 AP2S1 GBE1 CCDC85B STK24 HMP19 VAT1L STXBP1 SARAF JAKMIP1 ATP1A3 KLC1 ATP6V1B2 LANCL1 NMNAT2 SERINC1 NPTXR LINC01314 ATP1B2 THY1 SHE RPS27A CCT5 CEND1 NDUFB1 TRPC3 RPS26 IGF1 PRDX2 CBX6 RAB1A SLC38A1 ATP6AP1 ID2 ANAPC11 CAPZB TCEAL2 PMEPA1 PSMD2 MAP1B RPL13A TMEM14A RPL23A BCL11B RPS28 VPS35 C1QL2 RPL6 TPT1 NAP1L5 PINK1 SUMO3 STMN3 BNIP3 YWHAH CLTB RRAGA SLC25A5 GNG12 GRINA PET100 BSN RPL17 ATP6V0C CFH RP11-20I23.1 RNASEK-C17ORF49 GABARAP RPL17-C18ORF32 PCDHA4 TF\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "SV2C-expressing interneuron" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MT-CO3 SLC6A1 MT-ND4 NGFRAP1 RAB3B MT-ND1 SNAP25 NRIP3 VSNL1 GAPDH MORF4L2 GAD1 MT-CO1 MT-CO2 RPL13A C14ORF2 PLD3 USMG5 VAMP2 RPL41 SPOCK1 OXR1 GAD2 MTRNR2L1 SERINC1 STMN3 PREPL CCK MT-ND2 CKB YWHAH CALM1 MT-ATP6 ZNF385D SUB1 MPC2 PTPRT CFL1 NFE2L1 SERPINE2 RPL37A SYT1 CNTN1 HSPE1 PPP2CB ATP5E RPL32 RPL3 THY1 SYNPR TMSB10 TUBB2A SERF2 LAMP5 ITM2B ATP1B1 RPS27A ARL4C ADARB2 APLP2 HSP90AA1 NAP1L3 KIT NME1 ITFG1 SYT4 RPL26 LINC01296 SRM RPL36A EIF4A2 IFT52 COX7C CALM2 RNF11 RAB6A MT-CYB SCN1A RTN1 UQCR10 SLC12A5 STMN2 MTATP6P1 DYNLL2 SLC10A4 PTCHD4 MAP1B TMA7 ATP1A3 BEX2 EIF1AX ARL6IP1 CXCL14 RPL38 KCNAB1 TOMM7 STMN1 NSF HNRNPA1P40 TF ARFGAP2 RAB7A NCDN GPR158 TSPYL1 NXPH2 HDDC2 DNER MB21D2 NAPB HRH3 CDK5R1 TPI1 FGF12 MAP4 SV2C MTRNR2L6 KCNC2 PVRL2 TSPYL4 PSAP COX5B GTF2B NAP1L5 PIK3R1 SLC32A1 TUBA1B KIFAP3 LGI3 CIAPIN1 COX4I1 GPNMB MT-ND4L NDUFB11 LUZP2 PJA2 CLTC PNMA2 TXN JUND SH3BGRL2 KCNIP1 SYN2 ATP5J CA2 FTH1 PCP4L1 INA PPIH RPS15 GABRA1 HSP90AB1 PTPRS CLTB HMGCR GSTT1 PRKCB RGS12 ACTB PTGES3 GADD45GIP1 TMOD2 VDAC3 CHN1 MYBL1 LINC00086 CPLX2 COPE GRINA AP3S1 MLLT11 LMBRD2 ATP5J2 MTRNR2L8 ATP6V1B2 BCKDHB ATP6V0E2 GORASP2 WASL ID2 KIAA1211 NDUFB1 OLFM1 ABHD8 RAB3IP PDZD11 UQCRH PTMA ACTR10 NDUFV1 CMAS TMEM141 PPP2CA PLEKHG3 SNRPE C10ORF10 AES YWHAZ CTNNB1 NDUFS5 DSTN EID1 DMTN HNRNPH2 PHYHIPL CPE CERS6 TBCA FSTL5 RABAC1 NPTX1 GPM6A BRICD5 PSMA7 NDFIP1 RPL17-C18ORF32 STRAP IDS CRYM FAM43B PINK1 MT-ND3 GDI1 RPL17 STAG3 PNMAL2 IQSEC1 GRIP2 PITHD1 LINC00087 SCAMP5 GOLIM4 PTPRN ENO2 SKP1 TOX3 CCT5 CACNA2D2 BAG4 YWHAG GRIN1 MRPL20 TSPAN7 ETV1 ADORA1 AP1S2 PGRMC1 CNTROB CHGB OAZ1 EGFL7 PRKCE TCEAL2 FAIM2 PEBP1 TCEA2 FXYD6 CCDC85B PLCXD3 RGS4 LPPR4 CNR1 SLC8A2 SCD5 ARL6IP5 GPX4 RPL13 GNB1 ATP1B2 ISCA1 RPL35 NPTN UBA1 BCAT1 COX6C BEX4 KCNC3 APP B3GALT2 UBE2D2 SLC22A17 SEC61G HK1 ACLY SMYD2 SPARCL1 SLITRK1 MTRNR2L12 ITM2C ANAPC13 TMX4 SARAF FAM174A RIIAD1 GOT2 RPS26 UBA52 CHL1 OCIAD1 VSTM2L CYC1 SUCLA2 NDRG3 MAFB DPP6 MORF4L1 CEND1 INPP5F WSB2 RPS28 PRDX5 ATP5F1 BSG PSMD8 TERF2IP PPTC7 ATP6AP2 MGST3 LAGE3 SH3RF1 CRYAB YWHAB B2M ATP6V0C MBOAT7 RP11-20I23.1 ALDOA LMBR1 RP11-219A15.1 RPL21 AC244489.1 PCDHA10 PCDHA9 PCDHAC1 PCDHA4 DNAJC21 TBC1D15\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "SV2C-expressing interneuron" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MT-CO3 MT-CO1 MT-ND4 MTRNR2L12 SYT1 MTRNR2L1 MT-ND1 ATP1B1 MT-ATP6 SNAP25 SLC6A1 MT-CO2 MT-ND3 SYTL2 MTATP6P1 MT-CYB MT-ND2 SARAF GAD2 MTRNR2L8 APP MORF4L1 DNER RPS27A NRIP3 RPS6 GRIP2 KLC1 CALM2 RTN3 MAP1B CAP2 ZNF385D CLU SLC7A8 PRNP GDI1 MDGA1 GAD1 AES EFR3A TMSB4X QKI GPM6A OCIAD1 ARL6IP1 PROX1 PCDHGA5 MTRNR2L6 MORF4L2 FTH1 PSAP C1QL1 KIT IDS CKB EYA4 RP11-219A15.1 BIRC5 NDUFB8 SSBP3 KIF21A TMX4 SYNGR1 ZBTB20 SCN1A FXYD6 EFHD2 CD59 GRIN2A SLC38A1 ATP5J NARS GOT1 TPRG1L RPL39 PKM KCNC2 CERS6 CRKL PLCB1 ATP1A1 FAIM2 SERPINE2 CAMKK2 ATP1A3 CHST11 PTPRS NFIA MAFB CALM1 ITM2B PTCHD4 RAB3IP DSTN ADARB2 MT-ND5 YWHAG MAP7D1 PTMA HSP90AA1 STXBP1 EIF1 RP11-111M22.2 DNAJB6 RPL21 LUZP2 STX1A PSMA7 PACSIN1 CCK LAMP5 CADM2 RAB3B ETFB HNRNPA1P40 SLC9A6 MTUS1 CAB39 NFE2L1 POLR3H ZFAND5 TUBD1 GAPDH CDH6 SYT13 PGAM1 PGK1 SYNPR ARL4C WBP2 DPYSL2 FAM134A SPTBN1 LINC00116 FAM219A BEX2 FGF12 MGST1 TMEM35 NOS1 PPP3CA OXR1 NPTXR SLC9A1 VDAC1 YWHAZ GSKIP DNM3 THY1 MAP1A KAL1 TSPAN7 GHITM RPL17 NDUFA12 TEX15 LMO3 DDR2 RPH3A SLC22A17 FKBP8 ELAVL2 C1ORF233 AP2B1 KIF5A TMEM144 DYNLL2 NCEH1 RELL2 MAF NDFIP1 ATP11C DNAJA1 RNF208 SEZ6L2 MAP2K2 CCDC183 EIF4A2 FAM131B GMFB CDC37 UBE2QL1 DNAJC5 BAALC SCG2 RAMP1 HSPB8 B3GALT2 SEZ6 SFRP1 HSPA8 GNAQ CLTC CDKN2AIPNL RP11-345J4.4 TMLHE SLC32A1 GNB1 TMOD2 NDRG4 GABRA1 YBEY SV2C RAB11A AP1S2 PDP1 ATP2A2 CHN1 ITGA6 PI4KA NGFRAP1 TRPT1 RPL38 PNMA2 ATP5H GPR98 ISCU C14ORF2 ACTG1 SYT11 RP11-631M6.3 GPCPD1 EGFR GSK3A FBXL16 SCOC PAFAH1B2 PPP2R4 ACTB SKAP2 ATP6V1F SYT4 STMN4 PGRMC1 RPS12 KITLG PDGFRA ATOX1 DOCK10 KIFAP3 RNF11 RPL15 CNTN1 PRKAR1B TUBA1A TUBA1B PTPRN2 TCEB2 ADSS CALM3 NCAM2 PHYHIPL TENM1 RPL17-C18ORF32 KCNA2 ARF3 PSMB5 CA2 CLSTN1 CALN1 UBE2M RPL26 ENO2 RGS12 MDH2 EIF4G2 C18ORF32 CTBP1 NAP1L3 BCL11B BAI2 RPL11 ATP6V0E2 TMEM255A SERINC3 WDR47 RPS15 UTRN TXN RPL26L1 C12ORF57 SCAMP5 GRIN1 AP2M1 MTX3 CFL2 SLC2A1 TKT CNP GRIK1 ERBB4 VAMP2 D4S234E MYL6 TOX HCN1 FAT1 GUCY1B3 ATP6V1C1 LAMTOR5 DKK3 SIRPA SNRPE PCDH17 ARHGDIA OLFM1 PTPRM UQCRB CHST9 SCN1B ITM2C SLITRK1 EDF1 DNAJC6 FAM149A NAPA CADM3 RTN4 DCLK1 UCHL1 APLP2 DYNC1I1 TUSC2 GRIN3A PTPRT NSF ATP6V0C RP11-20I23.1 C11ORF31 B2M AC244489.1 TBC1D15 ARFGAP2 CFH\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "SV2C-expressing interneuron" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MT-CO3 MTRNR2L1 MT-CO1 MT-ND4 ZNF385D SLC6A1 SYT1 RAB3IP GRIN2A AES TCEAL3 ATP5E PGRMC1 ROBO2 MT-ND2 TMSB4X MT-ND3 GRIN1 NTNG1 ATP1B1 MTRNR2L6 ESCO2 MYO16 TPT1 RPL32 POLR2I UQCRH RCAN2 CALM1 MAP7D2 RPL31 RPS2 CDH8 DYNC1I1 TOX2 APLP2 ZNF536 AHNAK2 KCNAB1 UTRN REEP2 MTRNR2L12 ARL6IP5 PCMT1 PRKAR1B ANAPC13 SYTL5 KIT CCK PREPL DOCK10 SNAP25 RPH3A ACTG1 TPI1 MAGED1 APLP1 NHP2L1 MAPRE3 NRCAM RPS5 ATP6AP1 PCDHGA5 ITM2B OCIAD1 NAP1L3 CHST11 SULT4A1 DNAJB9 EGFR NRIP3 SERINC1 SCN1A CHN1 PRKACB TUBA1A MAP1B APP ZBTB20 ITFG1 ATRN TCEB1 WBSCR17 C19ORF70 NAPB MTRNR2L8 MAPK1 MT-CYB TMEM130 GPM6A MAF ABHD8 RTN1 SOX4 NR1I3 IGF1 AP1S2 OPRM1 GABRA1 CADM2 PNMA2 CAP2 PPM1A RBX1 PPP2R2B PTPRS IDS IGFBP5 UHMK1 SLC38A1 MORF4L1 ELAVL4 TOMM20 NDRG4 IQSEC1 UQCRB PNKD KLHL5 LMBRD2 MRPL33 NGEF NFIA GPRC5B TOLLIP TSPYL4 SYTL2 RAB3B CFH\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "SV2C-expressing interneuron" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: SYT1 MT-CO3 MT-ND2 MT-ND4 MTRNR2L12 RELN ATP1B1 MTRNR2L8 RAB3B MT-ND3 MTRNR2L1 SRP14 DNER ZNF385D TBC1D15 MT-CO2 MT-ATP6 NDRG4 GAD2 SCN1A SNAP25 RAB3IP SLC38A1 SLC6A1 RAB3C WDR47 MT-CO1 MT-CYB CALM2 HSP90AA1 CFH KIT C11ORF84 GPM6A HSP90AB1 DLX6 JAKMIP1 GNB1 PTPRT NAP1L3 APP PREPL GRIP2 CLU TMX4 STXBP1 GDI1 BIRC5 NDFIP1 SYNGR3 ELAVL4 AES SERPINI1 EFHD2 NFIA C14ORF132 ATP6V1G1 DNAJC5 ZNF536 FTL SERINC1 GPR158 DOCK10 GAPDH ATP5F1 DPP6 PRKAR1B TSC22D1 RTN4 TCEAL2 SCOC PLCB1 TF OR6D1P MAP1B NAT8L CPLX3 ETNPPL SV2C PAM RCAN2 TSPAN7 NDUFB4 CLSTN1 SLC22A17 CNTNAP5 PITHD1 NFE2L1 PNMAL1 SPOCK2 CDH13 NAP1L5 RAB4A KCNC2 TMEM35 C1D ARL6IP1 SUMO2 MORF4L2 ATP6V1B2 DPYSL2 TMTC4 KIF21A NDUFAF3 PTPN20A DLX1 CKB CRYAB CLPTM1 STMN1 STMN1P1 SNAP91 HPRT1 ACTB CTSD BTBD10 PPP2R1A YDJC RAB7A DIRAS1 NDRG2 SEZ6 SYN2 CBLN4 SCAMP5 TOMM20 ELAVL2 DCLK1 RPLP0P2 ATP6V1A SERPINE2 RTN3 SRP9 TMEM130 FSCN1 NDUFC2 YIPF3 RPL39 FAM131B ZFAND5 SKP1 CALM1 COA3 B3GALT2 EPHB6 GPX1 CCK ALDOC ITM2B GRIK1 YWHAZ OAZ1 CDH8 UQCRC2 COX7C MTPN TUBB4B EIF1AX CTNNB1 TMOD2 WBP2 EFR3A ENOPH1 GHITM GRM8 PSD3 PNMA2 KIAA1045 RNF11 QKI RNF182 PGM2L1 MRAS ARL4D C1QL2 CABP1 CREG2 CHP1 ARHGAP35 CTBP1 NCDN ARX RPS2 RHEB ADARB2 UTRN CHGB CHL1 NRIP3 CDC42SE2 TSPYL4 CETN2 PJA2 PIK3R1 VPS35 CHRDL1 THY1 TXLNB RP11-111M22.2 VCAN CD9 SEZ6L2 DYNLRB1 PRNP MYO16 ATRN SPOCK1 ARHGAP42 SARAF C20ORF24 HAPLN1 C6ORF1 PRKACB BEX2 ISOC1 PSMD2 PHYHIPL NMNAT2 SOD1 ANXA7 OPCML PRKCB GABRA1 RTN1 APLP2 PEBP1 ATP6V0E2 ADD2 MAP1LC3B KLHL5 NEGR1 REEP5 MAP4 CD24 LGI3 SCD5 PPP2R2B CDKN2AIPNL SYNJ1 MAPRE2 HMGCR PDGFRA DKK3 AP1S2 MTRNR2L6 FAM3C SERF2 RPL41 NSF SERPINF1 BSCL2 IDS DNAJC21\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "SV2C-expressing interneuron" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MT-CO3 SYT1 MT-CO1 MT-CO2 DNER SPOCK2 KIT MT-ND4 SLC6A1 MT-ND2 MT-ND3 NFIA RAB3C ARL6IP1 TF RPL37A CNTN1 RPL38 GABRA1 PNMA2 GRIN2A ATP1B1 VAMP2 CDH13 AES CALM1 SNAP25 RTN1 PGAM1 CADM2 AP1S2 ATP6V1B2 RPS27A B3GALT2 PTPRN TBCB GAD2 CLU SARAF KCNAB1 FXYD6 MAP1B EPHB6 MORF4L2 PSAP ZBTB39 ATP6V0B CDK5R1 MT-ND1 FAIM2 TSPYL1 ARL4C PGM2L1 DYNLL1 RPL23A NXPH2 SLC22A17 FARSA NAP1L2 TMSB4X ID2 RPL32 CYFIP2 GRIK1 BSCL2 SLC12A5 MT-CYB TRPT1 ITM2C UBA52 NRIP3 ATP6AP2 RAB3IP MTND1P23 NGFRAP1 SPOCK1 EIF1AX ACTR10 SDCBP ELAVL4 NTNG2 NCDN INA FKBP4 PRDM16 MTRNR2L8 NDUFB8 RPL35 CSDE1 BMP3 RPL12 FAM134A RPL15 KCNA2 PSMA7 TRPC3 SCG2 ANXA7 TPT1 PNMAL2 ATP5G1 SLC39A10 MTRNR2L12 DDR2 NEGR1 RNF208 SYNJ1 MTRNR2L1 NCAM2 RPS26 STXBP1 CREG2 TPPP NMNAT2 CLEC2L SERINC3 PCMT1 YJEFN3 CBX6 FTH1 RTN4 RPL13A FAM131C OLFM2 CD99L2 TERF2IP NPTN TMEM14A ITM2B OCIAD1 PREPL TGOLN2 DIRAS3 PRKCB MT-ATP6 PTPRVP HAPLN4 LPPR4 OXR1 RASGRF1 C1ORF233 PHYHIPL EIF4G2 SLC38A1 RPL31 ASPDH PNPLA3 THY1 ENOPH1 EFHD2 CDK14 ALDOC AC244489.1 PPP1R14A DNAJC5 CXCL14 RTN3 ITFG1 ATP5A1 CNTNAP5 SMIM13 MAP7D2 MPP1 PTMA SNX3 PKM NPAS4 SKP1 PTCHD4 CAMK2G BEX2 ERBB3 UQCRC1 COX7C SLC24A2 PNP BCL11B RELN BASP1 KLC1 MAFB TSPAN7 LDOC1L PFDN4 CPLX1 ATP2A2 PRKAR1B PRPS1 DKK3 ALDH5A1 NFE2L1 SCN1A CTSD PMEPA1 TMEM160 RPS28 TSC22D1 NPTXR UBC UBQLN2 BEX1 YAF2 CRH IFI6 KITLG PLCB1 KIF21A PDGFD SYN2 CRYAB EIF1B APP ATP6V1A SPTBN1 HMP19 BRK1 CPNE2 TENM1 PPP3CB KIFAP3 DOCK10 TMSB4XP4 RASGRP1 PPP1R7 ARL8A NTNG1 DPP6 THYN1 ATP5G3 MIF RAB3B SYTL2 RPL41 IDS ATP6V0C RP11-20I23.1 NSF MTRNR2L6 NR1I3 PCDHAC1 PCDHA10 PCDHA4 PCDHA9\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "SV2C-expressing interneuron" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: SYT1 SLC6A1 RAB3B SYTL2 GRIK1 SNAP25 MT-CO1 RAB3IP VSTM2L SLC7A8 ARL4C PSAP TUBA1B ATP6V0B GAD1 ZBTB20 GNAQ KCNAB1 TBC1D15 REEP2 WDR4 PDP1 NFIA ATP1B1 RANBP1 PLCB1 RP11-111M22.2 PREPL PTPRM SNRPN PJA2 CADM2 NPPC MTRNR2L1 PIP5K1B LCP2 BCL11B OLA1 ARL6IP5 GUCY1B3 DYNC1I1 PRKCE CERS6 RAB3C RPL23A VDAC3 TM2D3 GRIN3A EPHB6 LMO3 MT-ND3 CALM2 GPRC5B SYN2 GRIP2 MYRIP PPP2CB MAP4 RCAN2 MPPED1 PGRMC1 CHMP5 UQCRB TCEAL3 SLC7A2 PI4KA ATP1A1 MT-ND1 CISD1 MORF4L2 PNMAL2 MGST3 VCAN ATP1A3 SYNJ1 WBSCR17 ARL6IP1 KLHDC3 IDS SERINC1 VAMP2 HNRNPA1P40 ARL8A PDGFRA NPTN NECAB1 LDOC1 SELT CKB COX7A2L AK5 TXLNB CDK14 MT-ND2 CDH8 TMSB10 KLHL5 MT-CO2 ACTB FIBP RBX1 ATP2B2 YWHAQ MAPKAPK2 FAIM2 DNER LAMP5 TUBB4A TOMM20 APP CNTN1 UQCR10 MAFB MTRNR2L12 UQCRH MTRNR2L6 BSCL2 RPL17-C18ORF32 C18ORF32 RPS15 PCDHA4 PCDHA9 PCDHA10 PCDHAC1 DNAJC21 CFH ZNF385D\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "SV2C-expressing interneuron" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MT-ND2 MT-CO3 SYT1 MT-CO2 MT-ND1 OCIAD1 TMSB4X SNAP25 MTRNR2L1 MT-ATP6 CCK MT-ND4 MT-CO1 MT-CYB TM2D3 RTN4 MTRNR2L12 ATP1B1 CDK14 OPA1 MT-ND3 CNTN1 GDI1 DNER RPL31 SLC6A1 PRNP WBSCR17 TCEAL2 KLC1 YWHAH RAB3B ZNF385D TF BIRC5 PGRMC1 RAB3C PPP3CA RPL37A CRYAB BEX4 RTN3 ARPC5L TSC22D4 CLTA KCNC2 NCEH1 APP PAQR8 RPL32 ETV1 IDS COX7A2 NCDN PHPT1 RAB3IP ERBB4 PTPRN EIF1AX PTMA ATP1A1 TOX2 GAD2 MAPK1 PPP3CB SELT KIT USP5 SSBP3 SH3RF1 OXCT1 ATP5G2 ATP6AP1 HMGCS1 QKI ZCCHC12 FBXL16 DUSP6 ARF1 HMGCR SPHKAP ATP9A MYO16 PNMA2 SERINC3 RRAGA OLFM2 IMMP1L MTATP6P1 BCL11B UBQLN2 RAD23B YBEY PREPL LAMP5 FAM174A SPOCK2 TMEM65 TERF2IP NTNG1 INSIG1 BSG ATP1A3 GPM6A MT3 RPL39 ATP2B2 MAP2K4 REEP2 LANCL1 IDH3A RPS15 GUCY1B3 SLC39A10 MTRNR2L6 NUTF2 CFH MT-ND5 MARCKSL1 CTBP1 PCDHA9 MAPK8IP2 GABRA5 APLP2 SPTBN1 PEG10 KCNIP1 DPYSL2 TBC1D15 RP11-111M22.2 DNAJC21 ARFGAP2 RPL21 RELN TUBB\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "SV2C-expressing interneuron" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MT-CO1 SYT1 MT-CO3 KIT MTRNR2L1 SLC6A1 MTRNR2L12 MT-ATP6 ATP1B1 MT-ND4 MT-ND1 MT-ND3 MT-ND2 CDH13 PTCHD4 RAB3B DNER CCK MT-CO2 GRIN2A SARAF ARL4C SNAP25 GAD1 MTATP6P1 PRKACB SCN1A NXPH2 TBC1D15 DNM3 ATP1A3 RAB3C PRNP GRIN3A CLU FAM3C PLCB1 NRCAM MTRNR2L6 ARL6IP1 YWHAB KCNC2 BCL11B RTN3 GAPDH GOLIM4 ATP1A1 GAD2 NFIA SV2C LPPR4 GABRA1 CXCL14 ZNF385D NR1I3 RPH3A RPS26 HSPA8 RPL12 ZFAND5 IL12A RP11-111M22.2 FAIM2 CKB ZBTB20 APP ATP6V1F APLP2 HSP90AA1 ACTG1 D4S234E MTUS1 YWHAH AP1S2 ATP1B2 PSMC5 GRIK1 SYNPR CALM1 SLC1A2 RASGRF2 NDFIP1 NSF NECAB1 PJA2 RAB2A SLC38A1 THSD7A MORF4L1 CALM3 FTL CLSTN2 ITM2C TSC22D1 GABARAPL2 PCDHGA5 MT-CYB MAP2K4 UQCRC2 PTPRT CADM3 RTN1 SLC24A2 CRH RAB3IP ATP9A YWHAG TUBB2A OPCML NBL1 KLC1 HAPLN1 KIF1A RGS12 B3GALT2 PSAP IDS RP11-20I23.1 ATP6V0C TCEAL7 BSN QKI RTN4 CAP2 CRTAC1 FXYD6 RP11-154D6.2 PGD C18ORF32 LANCL1 MAPK1 NDUFAB1 ELAVL2 SKP1 GSK3A PPP3CA RASGRF1 RAB6A UBE2QL1 PITHD1 TMOD2 CDK5R1 BSCL2 TSPAN7 PCBP1 PDGFRA UBE2N ATP6V1B2 ENO2 GLO1 ASAP1 RPL32 SALL1 CLIP3 NRIP3 CD99L2 OCIAD1 LMO2 TRAPPC1 HSP90AB1 TMEM65 NDRG4 FBXL15 ADAM23 CITED2 ATRN KCNAB1 DNAJC6 MDH1 DNAJC5 ERH SLC25A4 CHL1 UQCR10 ARL8B BIRC5 HS6ST2 EIF4A2 CDK14 NGFRAP1 EPHA6 C16ORF13 RAB5C SPOCK2 NDUFB7 DPYSL2 ATP6V0D1 COX7C GPR158 BEX5 ALDOC CHN1 CLSTN1 ITM2B SLC7A2 DNAJA1 NRSN2 MTRNR2L8 YAF2 TCEB2 CNTN1 CCDC85B VSTM2L MYL12B MB21D2 PI4KA ARL6IP5 NCALD SCD5 HCN1 SCN3B DPP6 RPS6 ATP5E GRINA ACTR1A APBB1 PTMA HMGCR SLC8A2 PROX1 TPI1 TTN CX3CL1 RAB6B PREX2 FRMD4B GRIN1 KCNIP1 COPS7A MBP RRS1 MARCKSL1 SLC12A5 LAMTOR5 KIFAP3 EIF4G2 AES SERPINI1 ARF3 RHEB MT1X S100A6 SPCS2 ARF5 POLR2I BASP1 CDS1 ANK1 HSD17B14 MANBAL BEX4 GOT1 DCC TERF2IP STMN4 LAMP5 CAMK2G UBA1 SLC6A17 ARHGAP35 ALK HMP19 CALM2 PSMC3 UBE2V2 MAGED1 NTNG1 CMPK1 CNTNAP5 WDR47 PTPRM RPL7 PLCXD3 VPS35 GPM6A PCP4L1 THY1 RPL13 CBX6 GPR98 SRP14 UHMK1 SDCBP PRKCB ELMO1 ZNF385A RPL31 NXPH1 CAMKK2 BAG4 RPS27A HIGD1A SEZ6L ACLY PLD3 ADARB2 SNN ETV1 PRDX1 CSDE1 PPP2R1A PEG10 MZT1 KIF21A PPP2R2C ARL8A SNAP91 PDP1 PFN2 ATP6V1A GABARAPL1 ATP5H GMFB ARPP19 ZNF536 SYT11 CYP2R1 SYT4 BCAP31 VDAC2 DDR2 PRKAR1A VAT1L RPL23A MRPL11 STXBP1 PREPL ACTR10 DYNLRB1 LOX CNR1 GUCY1B3 KCNV1 CHRDL1 MTCH1 RPL26 CDK17 OPA1 GTF2H2C_2 LIN7B ETFB ATP6V1G2 PCDHA4 PCDHA10 PCDHA9 PCDHAC1 CFH\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "SV2C-expressing interneuron" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: SYT1 RAB3B SLC6A1 MT-ATP6 MTRNR2L1 HSP90AA1 ATP1B1 DNER SNAP25 RPL41 MT-CO3 RTN4 GAD2 KIT ARL4C TSC22D1 BCL11B PREPL CCK MT-ND2 MORF4L2 SCN1A ANXA7 STXBP1 MDH1 B3GALT2 RAB3IP FXYD6 MTATP6P1 MT-CO1 HINT1 OAZ1 RPL26 TSPYL1 PID1 CLIP3 ITM2B RPL37A MTRNR2L6 USMG5 RTN3 CXCL14 MTRNR2L12 MPPED1 PPTC7 CRYAB SLC38A1 MT-ND3 DIRAS2 RTN1 ATP1A1 NFIA AC073264.6 GRIN3A NUDT4 KLHL5 BEND5 FGF12 FBXO2 RASGRF2 FBXW11 RHOA CAP2 SAP18 MT-CO2 TUBA1B MT-ND4 CA2 CNTN1 MAP2K4 PTPRT RP11-632C17__A.1 RELN SYT4 ACOT7 KIF3C COX6C CLIC4 MSMO1 SERINC3 YWHAB TGOLN2 APP RAP1GDS1 KIF1A LANCL1 EFHD2 AES RPS15 PRKAR1A GMFB FSTL5 ELAVL4 MYL12B GYG1 BEX1 ATP6AP2 OCIAD1 SPOCK3 CPLX3 GABRA1 LDHB EYA4 TPT1 FAM131C HSPA8 ATP6V1C1 RBX1 TMEM130 PTGES3 ATP1A3 APLP2 SELT NAA38 NPTN ZNF536 RP11-111M22.2 SQLE RLIM SYT11 ACTB PRKACB EIF1 C11ORF31 SSBP3 ATP1B2 EXTL2 WBP2 CDH13 LAMP5 KIFAP3 CALM2 PMEPA1 EIF1B CYC1 PLCB1 SNAP91 TSPAN7 PDP1 RPS4X KCNIP1 MT-ND1 TUBA1A SULT4A1 ARHGAP35 DOCK10 RPH3A RFK MT-CYB HMP19 DCLK1 FAIM2 GHITM RPS26 LUZP2 SYNJ1 GOLIM4 KCNAB1 RPL35 GRIK1 PNMA2 ARL8B PRUNE2 MT3 COX4I1 RPS10 CDKN2D GLIPR1 NDUFA5 RHOB RPL15 VPS35 KCNC2 NARS NACC2 PRNP DNM3 AP1S2 CADM2 VSNL1 EPHB6 QDPR ATP6V1G2 HAPLN4 CFH MORF4L1 NDUFB8 PGK1 HNRNPA1P40 RPL36A PCDHGA5 PCDHGA10 PCDHGA6\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "SV2C-expressing interneuron" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MTRNR2L12 MT-ND1 MTRNR2L1 MT-CO2 KIT MT-ND2 MT-CO3 PRNP MT-CYB SYT1 SPOCK2 TM2D3 GPM6A DNER SNAP25 CADM2 GAD2 MT-ND4 RAB3B MTRNR2L6 OXR1 CST3 PSMD12 PROX1 OSGEPL1 DNM3 PJA2 MAF FIBIN SPTBN1 STMN2 GHITM YWHAG DPYSL2 PITPNA SMIM13 SYT11 GOLIM4 CLIC4 MTRNR2L8 USP5 HTRA1 ARL8B CPE OR6D1P AP3S1 RTN1 PKM MAPK1 AES MT-ND5 HSP90AA1 PAFAH1B2 ARF3 CLSTN1 VAMP1 C14ORF2 HMGCR HINT1 WASL BAD NPTXR GADD45GIP1 MT-ND3 EPDR1 CHL1 TMEM59L REEP2 CPLX3 AP1S2 TSPYL1 CEND1 DISC1 SYN2 SYNJ1 OPA1 SNX3 SDCBP LZTS1 PGRMC1 NFIA FXYD6 SEZ6 RGS12 CALM2 MFGE8 BASP1 ELAVL2 STXBP1 CFL1 TIMP3 MT-CO1 CHMP5 NEGR1 RAB3IP DPP6 PLCB1 PTPRT TCEB2 GPR158 SLC6A1 EIF1AX ATP6AP1 RAN TMEM130 CORO2B PPP2CB SCN1B RAB3C SLC38A1 MT-ATP6 ATP5F1 INSIG1 PEBP1 TMOD2 TOX2 GRIK1 PMEPA1 CALM3 RPS6 TPGS2 THSD7A KIF21A SGCD ACTB PRIM1 NUDT4 BIRC5 ATP6V0C IDS RP11-20I23.1 TF\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "SV2C-expressing interneuron" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MT-CO2 MT-CO1 MT-CO3 MT-ND4 MT-ND2 SYT1 MT-ATP6 MT-ND3 ARL6IP1 PRNP MTRNR2L12 PTPRS SPOCK3 GPM6A HMP19 FXYD6 SERPINI1 NDFIP1 ERBB4 EIF1AX SNAP25 RELN SEZ6L COL5A2 SLC6A1 RHBDD2 SYNPR MTRNR2L8 REPS2 OXR1 ACTG1 VSNL1 SCN3B MORF4L1 ROBO2 CALB1 FAT3 DYNLL2 NAP1L3 BIRC5 ITM2B BSG ARL1 RHOB ATP2B2 CALM1 PTGES3 MT-CYB ETS2 SLC9A6 SCG2 TSPYL1 SERINC1 COX6B1 ATP2B4 PTPRN2 DPP6 GABRA1 LPPR4 STXBP1 BASP1 DKK3 PSD3 ITFG1 PAM PITHD1 TMEM59L ATP1B2 SYTL2 RAB3B ARFGAP2 MIR6723 SCOC PCDHA4 CALM3 MT-ND1 EPS15 NCOA4 VAPB SLC39A10 MDH2 ATP5J CLSTN1 NCAM2 STMN2 RPL15 CKB PTPRT NIPA1 CACNA2D2 EXTL2 NAPB CLPTM1 MAP1LC3A MT-ND5 UBE2QL1 SERPINE2 PDE1A ZFAND5 CNTN6 LINC00116 UBQLN2 KCNAB1 CDKN2D COPG1 CDS1 RGS12 CDH22 CXXC4 PRKACB FSCN1 SCD5 PJA2 COX7C PPP3CA ATP1A3 HIF3A SOD1 CFH SYN2 KLHL12 PARM1 UCHL1 TMSB4X YWHAB TBCA VDAC3 ALCAM RPS19BP1 SMYD2 ATP1A1 UBC TNNT1 STMN3 TP53I11 RASGRF1 RAB11A MTRNR2L1 ERMN DNM3 ATP9A ATP6V1E1 NDRG4 SKP1 OVCH1 MMD GNB1 CNTN1 MAPK1 GTF2B SPHKAP MED31 ARL8A MGST3 DPYSL2 MAP1LC3B KIF5A TERF2IP KIT DNAJB6 PNMAL1 PRKAR1A DNAJC6 WBSCR17 FAM19A2 SPOCK1 SRP9 GAD1 FTL PPIA NPAS3 SPRTN OAZ1 RP11-111M22.2 SPOCK2 RP11-133L19.3 PRDX3 IDS DYNLL1 ARPP19 ENO2 APLP2 STMN1 TMEM151A MSMO1 CHRM2 LMBRD2 CAMK2G PGM2L1 SDCBP CDK17 PCDH8 GPCPD1 ATP1B1 ATP6AP1 COA4 EID1 TPGS2 MARCKS PRPS1 TALDO1 NXPH1 NCEH1 APP RTN4 OLFM1 PSMC5 OAT NGFRAP1 EPS8 MTCH1 UQCR10 PHYHIP CAPZB LUZP2 SLC25A11 NAP1L2 DIRAS2 PPM1A ZNF365 PPP1CB ATP2A2 NAT8L SUSD4 DCTN1 MAP1B GADD45GIP1 CA11 ACTB RASSF8 AK5 FKBP4 FNDC4 SLC38A1 RTN3 GOLT1A CCDC124 PCDH17 CADM2 FTH1 ATP6V1G2 TMEM191A GTF2H2C_2 PTCHD4 PCDHGA6 TBC1D15\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "VIP-expressing interneuron" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MTRNR2L1 MT-CO1 MT-CO3 ZNF385D SYT1 MT-CO2 THSD7A MT-ATP6 MT-ND4 MT-ND2 TBC1D15 MTRNR2L6 SNAP25 MT-CYB SLC22A17 PRNP ATP1B1 MT-ND1 GAD1 CPE PROX1 NDFIP1 YWHAH ALCAM RTN4 GRIN2A CADM2 MT-ND3 PTCHD4 RTN3 CREG2 RPL13A FGF12 DKK3 FAT3 CLSTN1 PEBP1 EIF1B NDRG4 SLC6A1 AK5 TPI1 TMEM130 ARL6IP1 ERBB4 PNMA1 ENOPH1 APLP2 NPR3 SERINC3 GDI1 PPP2R1A BASP1 BSG PTPRN SEZ6L2 MT-ND4L RP11-111M22.2 TOMM20 GABRA1 IDS TMOD2 COX4I1 TMA7 PREPL ATP5A1 S100A6 NUDT21 PSAP ATP1B2 NGFRAP1 SLC39A10 SDHAF1 PDCD5 PCDHA10 NR2F2 NEFH ARL4C DPYSL2 AP1S2 NAP1L2 PKM SYN1 OPCML KIAA1211 SPOCK3 PJA2 PAQR9 CLU MRPL52 ADAMTS5 KCNK1 FTH1 YWHAQ AURKAIP1 MAF OR6D1P TAGLN3 PNMA2 ZNF425 EDIL3 PTGDS TSC22D1 GPM6A SPRN FKBP4 PPTC7 WASL C12ORF57 GABARAPL1 GRINA CYC1 QKI COL9A1 STMN2 SCD5 SEPW1 RAB1A PNMAL1 CRYAB NAPB DYNC1I1 CD99L2 CHCHD2 RAP2A TSPYL1 TMSB10 AP2S1 SLC7A5 SCAMP5 SERINC1 TERF2IP TMSB4X ATP6V1G1 TRIM37 CERS6 PRUNE2 KLC1 ARL6IP5 MAP1B TMEM14A ITFG1 BEX4 APP CALM3 ATP2A2 NFE2L1 COX8A NPAS3 KCNC3 RPS15 TEX2 TIMP2 NARS SPTBN1 WBP11 HSP90AB1 SNAP91 MLF2 CX3CL1 RGS12 AZIN1 SFRP1 UBB DNAJB6 ENO2 SCG2 HDDC2 INPP5F PDE1C UQCR10 SPOCK1 NXPH3 VAMP2 NIPA1 EIF1AX PAM YWHAB GHITM RRAGA GPR158 MAP1A DLD NEGR1 ANK1 MAP1LC3B CBX6 GNG3 MIEN1 PARM1 GDA NEFM SPCS2 PCDHB18 CNR1 KIF5A RPL23A C18ORF42 PLCB1 CYCS RAB2A PCDHA9 DGKG ATP6AP2 STMN1P1 MTATP6P1 UBA52 COX14 DYNLT3 OXR1 LRP1B RPL32 VAMP1 COX7C MAPRE3 ATP6V0B NCALD PRDX2 CSDE1 PGM2L1 TBCA EDN1 ITM2B WFS1 RANBP1 CAP2 MAP2K4 SLC12A5 IGFBP5 EPDR1 RAB7A HSPA4 BCAT1 TXN GNAQ COL11A1 KIFAP3 RFK RSL24D1 SERF2 ALDOA RNASEK-C17ORF49 ATP6V1G2 RPS28 RPL21 AC244489.1 PLEKHD1 NR1I3 HNRNPA1P40 SYTL2 RAB3B\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "VIP-expressing interneuron" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MT-CO2 MT-ATP6 MT-CO3 MT-ND4 MT-ND1 MT-CYB MTRNR2L12 MT-CO1 MT-ND2 SYT1 RAB3B HSP90AA1 APP GRIN2A MAP1B HSP90AB1 STMN3 NAT8L SYNPR CADM2 MTND1P23 PSMC1 SV2B PAK1 RPS27A KIF1A C18ORF32 TUBB4B ADARB2 DCC ST8SIA2 RAB4A ARL6IP1 NAP1L3 EIF1AX ACTR6 FKBP8 UBA52 PPIA SNAP91 ARF1 NPAS3 CHL1 PEBP1 POLR2M ANK1 GAPDH SYT17 YWHAG TUBA1A VAMP2 TMEM200C UBC RPL10A HNRNPA1P40 RPL37A SPOCK1 SNRPN CLTC ZCCHC12 TEFM NCAM2 FAM219A ROBO2 IDS SKP1 ADAMTSL1 ELAVL2 SCN1A STXBP1 SCAMP5 PNKD RPS28 SEZ6 CALM2 PARM1 NRIP3 NDUFA4L2 TCEB1 DNER ATP9A DPF3 COX7A2 NACC2 PTPRN2 TSPAN7 SLC38A1 ADAM33 NDFIP2 PRNP CRKL RNF208 C14ORF132 MT-ND5 CAMK2G RGS5 SLC7A5 SLC6A1 LINC00087 C3ORF80 TKT KCTD12 CLSTN1 TMEM130 EDF1 SEZ6L ATP5H CALM1 PFDN4 GAD1 UQCRB RASGRF1 PLD5 FTH1 TSPYL1 KCNK1 QDPR PHYHIPL MT-ND3 GABRA1 GUCY2D CNTNAP3 B3GALT2 CPE ATP6V0E2 RAB3C PPP2CB RPL8 ISCU IGFBP5 EPS8 INPP5F PTPRZ1 DNM3 SARAF MPP1 FIBP NARS NECAB1 ATP6V1A CITED2 B2M MCHR2 RPL17-C18ORF32 RPL17 PCDHGA10 PCDHGA6 PCDHGA5\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "VIP-expressing interneuron" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MT-CO3 MT-CO1 ELAVL2 MTRNR2L1 MTRNR2L12 MTRNR2L8 HSP90AB1 CXCL14 PRNP CNR1 SYT1 SYNPR ADAM33 CYFIP2 DPYSL2 VDAC3 CALM1 EIF1B MAP1B OXR1 MT-CYB PRKACB ARL4C ITM2B DNAJB6 QKI CDH7 MTRNR2L6 RTN3 MT-ND2 SDCBP SNAP25 RAB3C ATP6V0E2 SLC6A17 RNF11 SUSD4 PTMA COQ10B CALM2 NAP1L3 YWHAZ ARL2BP SNAP91 GPRC5B FIS1 CNTN1 YWHAG SSBP3 CHL1 DOCK10 MT-ND4 DKK3 ERBB4 RPL35 CLEC2L ZFAND5 SLC25A5 NBL1 TCEB2 SPOCK1 CLU TPT1 ROBO2 RNF17 KLHL12 UQCRB AP2B1 ADSS BCAT1 PLCB1 TOX3 MKX GUCY1A3 PPP2CA ATP1B1 SCN2B RP11-111M22.2 TENM1 VSTM2A FTH1 MAP4 ATPAF1 RASGRF1 LYNX1 NDUFB5 MT-ND1 STMN4 TSPYL1 SLC12A5 WBSCR17 DNER TSC22D1 FABP5 OAT RGS12 GPM6A BRK1 ASAP1 NDFIP1 PSAP ZBTB20 MAPRE3 MT-ATP6 DCTN1 SEMA3C DSTN NAP1L2 MRPL33 RPL39 BTBD11 SCAMP5 ISG15 ATP2A2 NCAM2 BAG4 PRKCB AKAP12 MT-CO2 ABHD14A REPS2 NUAK1 COX4I1 IGF1 TGOLN2 UQCR11 LPPR4 RPL13A NDN EBAG9P1 CCK IQSEC1 NPAS3 STX1A RPL37A NEK7 WBP2 ETFB VEGFA GAD2 SNRPN ARHGAP42 UBA52 NECAB1 CADM2 OCIAD1 RAB3B ZNF385D SYTL2 TBC1D15 DNAJC21 GABARAP IDS HNRNPA1P40 PLEKHD1 BIRC5 GTF2H2C_2\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "VIP-expressing interneuron" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MT-CO1 MT-ND2 MTRNR2L12 RAB3B MAP1B CCK MT-ND4 PROX1 MT-CO2 CALM1 VIP MT-CO3 GAD1 HSP90AB1 RPS12 MT-CYB SNAP25 TBC1D15 PGM2L1 DCLK1 SPOCK2 CNTN1 COX5B CADM3 TAC3 HSP90AA1 OLFM1 ROBO2 PRKACB SLC6A1 MT-ND3 FAM174A CNTNAP3 CALM2 AURKAIP1 RPL15 ARL4C STMN1 RTN4 SLC17A7 GNAQ DIRAS3 FXYD6 CLTC SCAMP5 ATP6V1F EPHA6 YWHAZ SYT17 GAD2 PNMAL1 TSPYL4 TUBA1B ARF1 AP2B1 CDH8 DNER DNAJC5 VCAN PPP3R1 HSPE1 BASP1 FAM149A PDP1 CORO2B AP1S2 MT-ND4L LANCL1 CERS6 DKK3 MT-ATP6 ATP6V0E2 EIF4A2 PREPL DLX1 MORF4L1 CHRNA2 SYNPR ATRN GRIN1 GPM6A RPL13 ST8SIA2 FGF12 UCHL1 TENM3 TCEA2 YAF2 ATP1B1 SLC24A2 PSMB7 MTCH1 OAZ1 EPAS1 ATP5H CACNA2D2 RPL11 TUBA1A FIGN MTRNR2L1 ARL2BP SMOC1 FBXL16 RLIM KCTD12 ADAMTS6 SH3BGRL3 ANKRD18A CAMK2N2 MAP4 RPL38 SERINC3 TPT1 CNR1 HPRT1 GHITM RPL37A NDRG4 HS6ST2 WBP11 SYT1 KCNK2 ACOT7 ATP5B KIF5A CHGB PRNP NDUFS5 CYFIP2 NDUFA12 RAB5C D4S234E RAB3A ETV1 SKP1 RPS4X ASIC4 IGF1 PCP4 TOMM20 SCN1A TIMP2 C14ORF132 NUAK1 ARF5 ZBTB18 MAPK1 ATP1A3 NPAS3 RP11-195F19.5 NUDT21 GLUL WSB2 COL12A1 SEMA3B GNB1 PGD MT-ND1 CD63 CAB39 FTH1 MYL6B CMAS WNT4 SNRNP25 HMP19 NAP1L2 WFS1 MT-ND5 GDI1 CACNB1 SYNPO PEBP1 CHP1 MAF GABRA1 CLU SLC7A8 PTK2B DOCK10 PPP3CA ASAP2 RTN3 FAIM2 ARL6IP1 BIRC5 ATP5J VSTM2A TMEM59L LRP2 GDA RHOB ZBTB39 YIPF3 YJEFN3 NAPB SPARCL1 SCN3B CDK5R1 PGRMC1 KLC1 ERBB4 PLCB1 IDS RPS28 BSCL2 ALDOA NDUFA13 RPS15 HNRNPA1P40 PLEKHD1\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "VIP-expressing interneuron" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MT-CO1 MTRNR2L12 MTRNR2L1 MT-CO2 ATP1B1 ZNF385D MT-CO3 SNAP25 MTRNR2L8 MT-ATP6 MT-ND4 PREPL ERBB4 HMP19 ATP2B2 CADM2 ARL4C MT-ND2 SYNGR3 PLCB1 RTN3 RTN4 LRP1B GAD1 SCG2 NCAM2 ALCAM RPL17 KCNC2 APP THSD7A MAP1B CPE MT-ND1 DPYSL2 RPL13A SYNPR SEZ6L MTRNR2L6 STMN3 CEND1 TMSB4X RPL41 INPP5F NFIA ADAMTS6 TMEM59L LYNX1 TIMP2 MAPK1 TNS1 SLC6A1 DNAJA1 PPP3CB TSPAN7 DPF3 ANKRD26P3 ITM2B CNTN1 PTMA NUAK1 RPS3A MT-ND4L ASIC4 RPS27A CALM1 CALN1 HS6ST3 PDE3A OXR1 SPTBN1 WBSCR17 PRUNE2 CCDC85B SPOCK1 NR2F2 SKP1 BCL6 TSPYL4 MT-ND5 MAP4 RTN1 NFE2L1 OR6D1P VWA5A PGK1 ATP6V0C DGKG FBLN1 MAPRE2 CNTNAP5 PPP2R4 MYOM1 ATP2A2 RPL38 CREG2 ATP1A1 NRGN ARL6IP5 IGF1 GOT1 NEGR1 AP1S1 CRIM1 RHBDD2 NRIP3 DPY30 NDFIP1 MT-ND3 UBQLN2 PRKACB PITHD1 NRCAM SDCBP B3GNT1 C14ORF2 PPP2R2C PARM1 AK5 CTBP1 CD99L2 ATP6V1A GSTP1 NDUFB11 SH3GL2 C11ORF31 PPP2CB MRAS NAT8L SAP18 PPP2R2B RNF208 DNER CDK5R1 DSTN CALM2 DOCK10 GRIN1 CSDE1 BEX4 PAM SCN2B PAX7 STMN2 YWHAH SMAP2 EIF4A2 SLC35B1 SHISA6 HSP90AA1 HRH3 SLC12A5 LRRC69 PTPRZ1 H2AFZ COL11A1 BTBD11 ELAVL4 SYNJ1 ATP6V1E1 CERS6 RGS12 TEX2 NDUFB10 GDE1 FAM134A NDUFA1 PACSIN1 FBXL16 DHCR24 BCAT1 NPAS3 OLFM1 TP53I11 AP2M1 MRPL20 OCIAD1 KITLG UBL5 IGSF21 PCP4 TMEM100 HSPB3 PRELID1 MAF MT-CYB GABRA1 DNAJC5 CDH13 PREX2 NDUFB8 SRM SNAP91 PSMD8 ABHD8 PGD HCN1 CAMKK2 RP11-111M22.2 FXYD6 HMGCR CFL2 KIF1A C18ORF32 ANK1 ALDOC MORF4L2 SRP14 IFI6 TRIM37 KCNMB4 SCN1A PKM TENM3 LMBR1 APLP2 GRIN2A GNAQ TMX4 RPL32 BRK1 CADM3 SYTL5 CYCS PFDN4 FIGN HTRA1 DIRAS1 CAMK2D BTBD10 ATP5B SNX3 TPRG1L PPARGC1A PNMAL2 TKT RPS28 RBX1 PSMC3 CLSTN1 CCK ARL8B PCMT1 TNNT2 DCLK1 SLC22A17 CPLX2 PRPS1 PIN1 GPATCH4 RPL31 HSP90AB1 SYT5 B3GALT2 CNR1 TMEM160 NCALD MAGED1 EBF4 CDH8 CIAPIN1 C6ORF1 NHP2L1 BSG COL21A1 RAB3IP ARL8A RP11-20I23.1 PNMA2 ALDH5A1 FHAD1 TMSB10 CNTNAP3 GADD45GIP1 UQCR11 ATP6V1G1 SPOCK2 ATP6V1C1 ETV5 RAD23B VGF RAB2A PHYHIPL SNCA STMN1 SH3RF1 CABYR ATP5J2 PRKCE NRAS RPL7 NR1I3 CAPZA2 IDS RNASEK-C17ORF49 HNRNPA1P40 RAB3B SYTL2 TBC1D15 DNAJC21\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "VIP-expressing interneuron" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MT-CO1 MT-CO3 RAB3B FAIM2 ITM2C HNRNPA1P40 SERINC1 SLC6A1 YWHAG RPL37A CCK CLU SLC22A17 RPS15 RTN4 VIP ATP1A3 ATP6V0B ITM2B DLX1 EFCC1 TBC1D15 DNAJC21 KIF21A PSMD12 GPM6A SSBP3 RPL38 BSN PVRL1 PPIA PNMA2 PIN1 KIFAP3 ZCCHC12 MT-CO2 STMN1 MRPL55 CADM3 SELM CNTN1 MAPRE2 ATP5J UHMK1 ATPAF1 RPL10A PCDHB10 MT-CYB CXCL14 BEX5 ATP5I LMCD1 WSCD1 ATP6V0E2 MAP2K1 LMBRD2 SKP1 MZT1 GABARAPL1 SNCA PCDH18 DNAJB9 ALCAM CTGF UCHL1 ACTB CD24 UQCRC1 ATOX1 PROX1 SNAP25 PSAP CST3 UBE2F ARHGDIA APP WBP11 NCAM2 PAFAH1B2 SCOC CHCHD2 CTBP1 RPL13 NDUFA13 APLP1 EPHB6 MAP1B GAPDH MAP1LC3A GLRA2 POLR2I YJEFN3 INPP5F SCD5 DNER TOPORS-AS1 SARAF DPYSL2 HTR2C PPTC7 RHBDD2 NR2F2 RPL15 GNAQ RPS10 KIAA1024 PNMAL1 IPCEF1 PTPRS IDS CALM3 NDUFB8 MLF2 TMSB4X STUB1 PKM CTXN1 ALDOC BIRC5 STX1A PTPRN AES DNAJC4 FAM134A COX5B BSCL2 RP11-20I23.1 ATP6V0C\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "VIP-expressing interneuron" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: RTN1 MT-CO1 DNAJC21 RAB3B DCLK1 MT-CO3 SYNPR RPL13A ERBB4 GPM6A RPL41 MT-CYB MT-ND4 FXYD6 NDFIP1 RPL21 SYT1 MT-CO2 SNAP25 RPL17 PRKACB RPL38 TPT1 RPL12 NCDN RPL26 STXBP1 HSP90AA1 CALM2 RPS28 PEG10 VIP RPL39 MYL6 TAC3 RPL23A CALM1 FKBP8 MDH1 SYT11 RPL32 TAGLN3 CABP1 SLC25A5 PLD3 RPL31 MTRNR2L12 FTH1 RTN3 ITM2B RPL37A PNMA2 NDRG3 RPL3 NPTXR MT-ND1 CNR1 TUBA1A SARAF SCG2 RPL35 ATP6V0B RNF11 HMP19 RPS3A SERINC1 DYNLL1 NDUFA13 NELL2 CYFIP2 PCP4 ACAT2 SLC38A1 SLC24A2 CPE EPS15 PEBP1 PRUNE2 AP2S1 MTRNR2L8 ATP2B2 FTL GPR68 PIK3R1 TUBB2B TSPAN7 DNM3 MAP1B TOMM20 TRHDE CAB39 SPOCK2 RPL18A PPP2CA PSAP CHRNA2 SLC22A17 TCEAL2 CFL1 CDC37 BTBD11 TPI1 HSPA8 CTD-2026G6.3 MAPK1 ATP1B1 CCK GAPDH BAD UBB ACTB CTNNB1 RNF181 ACTG1 NCALD HK1 NCEH1 NDUFS6 BASP1 EIF4A2 CHL1 GABRA1 UBE2V2 RPS27A ZFAND5 RPS26 ARPP19 GPX1 ATP6V0E2 GDI1 OCIAD1 CAP2 NEGR1 ARL6IP1 CISD1 NDUFS5 TPRG1L UBA52 NDUFB8 PET100 NPTX1 NARS LDHB CYCS CKB SSBP3 COX6C APP THOC7 UBE2QL1 TUBA1B THY1 TSPYL1 SCAMP5 RP11-111M22.2 HTRA1 MAP4 HMGCS1 TMSB4X MGST3 MTRNR2L1 SNX3 PTPRS SPOCK3 GAD1 YWHAB CADM2 CLU COX7C ALDH5A1 ARL6IP5 INSIG1 RPS12 IDS ARFGAP2 PRDX2 ETS1 FXYD7 SLC9A6 TMA7 RABAC1 RLIM SUSD4 ATP6V1A STK39 WASF1 PEA15 COX6A1 USMG5 PPP1R9B COA3 TPPP PIP5K1B GUCY1A3 SPARCL1 NDUFA12 SLC17A7 PVRL1 PLS3 TUBB2A RPS15 AK5 VAMP2 CLTC ATP6AP1 C12ORF49 NUAK1 RAB2A RAB3IP LPPR4 RGS12 IMMP1L STX1B CLSTN1 ARC RPS5 PSMA7 RTN4 TOMM7 ATXN10 INPP5F EIF4G2 TOMM70A PNMA1 SERINC3 PRKAR1A DDR2 SHISA8 INA RAD23B ELAVL4 MARCKSL1 EXTL2 MAP2K2 WBP2 TMX4 ATP6V1F MZT2B COX7A2 CADM3 KLC1 DLX1 MMD ANXA7 MYBPHL TENM3 ATP5A1 APBB1 TMEM144 TMEM59L PHYHIP COX7A2L ADSS TOLLIP MRFAP1 PRPS1 ROBO2 PAFAH1B2 CNTNAP5 SNX17 UBE2N WBP11 RPL11 VSNL1 CD63 CNRIP1 GPX4 MAP7D1 RAB1A RHOB KIF21A SPOCK1 ACTR10 MARCKS GDA MAPRE3 RASGRF1 NGFRAP1 NAP1L2 WARS ATP9A TIMP2 TMOD2 MRPL51 KCNAB3 YWHAZ SUCLA2 ATP5G1 RPL7 SLC31A2 THSD7A LYPD1 WSB2 TERF2IP LANCL1 GUCY1B3 ATP6V1E1 LMO4 MLLT11 SMS BSG AURKAIP1 ABHD14A NWD2 POLR2K VPS35 NAP1L3 DSTN PFDN1 NDRG2 RAB3A NAPA CAMK2G RAB3C DUSP6 SYNGR3 DHCR24 MAP1LC3A CDS1 GRIN1 UQCRB CD99L2 MT-ND2 NDUFA8 ATP1B2 KIF3C PLD5 RAB6A NDUFA2 MRPL52 PPP1CB PGD REEP2 SCOC UBA1 NFIA RPL6 PCYT2 OLFM1 GUK1 ATP1A3 NDUFC1 SNX10 SYT5 PTPRN2 DYNLRB1 MYEOV2 ATP5I FAIM2 EPB41L3 ENC1 ZBTB18 RPL10A PARM1 SELM MAGEH1 SDCBP PREX2 C12ORF57 SNCA FAM3C TMSB10 RPP40 CXCL14 VDAC1 GNG5 CLIP2 ZNF385A SLC12A5 RGS4 PSMC5 MAP2K1 ECM1 IRS4 SUMO1 PRNP VDAC3 WBSCR17 PITHD1 NOP10 MYL6B KRAS SYNJ1 COX4I1 CNTN1 HFM1 STMN1 PPIA PTGER3 PHKG1 NDFIP2 UQCRFS1 BNIP3 OLFM2 NRGN MRPL55 YBEY UCHL1 KCNK1 DMTN C19ORF70 MYOM2 NR2F2 ATP6V0D1 TMEM35 TPD52 RPL13 AP1S1 KCNAB2 GLIPR1 CSDE1 SNCB NDUFB4 TRMT112 RAN SKP1 PJA2 SRR OPCML SLC2A1 PGAM1 PFKP DACH1 ALDH1A1 PPP2R1A VAPB SPTBN1 TUBB4B ATP5B ALDOC ADAM33 DKK3 MSMO1 PGRMC1 SUMO2 MT-ND5 PROX1 PELI3 FARSA PPP2R2B PCDHA9 WI2-1896O14.1 GHITM MAST3 ATP5E PGM2L1 ATP1A1 ARF1 SEMA4G POLR2J ATP6AP2 PLCB1 NAA38 KLHDC3 IDI1 B3GNT1 REEP5 CLSTN2 NDUFA1 LGI3 SYNGR1 UBC NELL1 CEND1 RPL15 CAPZA2 KIF1A NECAB1 PDE1A KIF5A KCNMB4 CDC42SE2 ARHGDIG CHCHD2 RRM2B CHGB PCDH8 RHBDD2 ALDOA HSPE1 NSF HNRNPA1P40 RPL36A TUBB AC244489.1 TBC1D15 SYTL2\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "VIP-expressing interneuron" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MTRNR2L1 DCLK1 TMSB4X GRIN1 PIK3R1 TAC3 THSD7A CALM1 RTN3 FAIM2 VIP PREPL ATP1B2 RPL41 RPL10A MT-CO2 NPAS3 ATP2B2 PCSK1N MTRNR2L12 PDE3A RGS12 OXR1 SPARCL1 RP11-219A15.1 MT-CO1 TUBB2B MAP1B PTHLH TBC1D15 RAB3B ZNF385D SYTL2 SEZ6L2 TENM3 APP RPL18A RPL37A PCDHB10 SOD1 SEZ6L HSP90AB1 SLC6A1 SYN1 MT-ND1 NDUFA13 PSAP KIAA1211 MT-ATP6 ATP5G2 MT-ND5 GABARAPL1 CADM2 NRCAM NPR3 PPP3CB RTN1 SLC1A2 CCK CAPZB HS3ST3A1 GGNBP1 SYNGR3 SALL1 ZBTB18 SULT4A1 SPOCK1 HSP90AA1 GAD1 MT-ND4 ETFB NBL1 RRM2B CHCHD2 ASIC4 UQCRH MRPL33 HINT1 SNCAIP CYP2R1 COX7A2L VSNL1 RAB3IP RNF11 CRIM1 ASAP1 NRIP3 ERBB4 SYT13 NFE2L1 VAT1L COL12A1 SPOCK2 EIF1AX SLC12A5 COX6C PIP5K1B AP1S2 FXYD6 ZNF365 PRKAR1B ATP1B1 ATP6V1A ENOPH1 SPOCK3 LAMA2 OLFM2 MT-ND2 RAB1A KIF1A MAP1LC3B FLOT2 TP53I11 TMA7 GABRA1 RPL8 C11ORF65 MZT2B SYT4 LGI3 UBE2QL1 ITM2C PCDH15 RHBDD2 ARF5 TSPAN7 NHP2L1 CALM2 TCEAL2 UBC EIF1 LANCL1 ADAM33 SCN3B SSBP3 OR6D1P BSCL2 MTRNR2L6 SNRPN DNAJC21\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "VIP-expressing interneuron" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MT-CO1 CPLX2 MT-CO2 MTRNR2L1 SNAP25 SYT1 ATP1B1 VAMP2 SPOCK2 RTN1 EFR3A GAD1 MAP1B ACTB FSCN1 ROBO2 SERINC1 HSP90AB1 KIF1A PNMA2 RAB3B GPM6A ATP2B2 VIP CNTN1 CADM2 PREPL VCAN TSPAN7 FAIM2 EID1 INA MT-CO3 RGS12 MTRNR2L6 MTRNR2L12 CCDC115 MT-ATP6 RPL41 RAD23B CHCHD2 CCT5 EDIL3 RNF11 C14ORF132 CALM3 CBLN4 TUBA1B CLSTN1 BAALC NUTF2 PPP3CA SCAMP5 HK1 IGSF21 COPS8 UCHL1 PFKP MYL6 MARCKS ATRN SMOC1 DLX1 JAKMIP1 CEND1 SCOC ACTG1 THSD7A KCNIP1 SPOCK3 CDC42SE2 MAP4 PRKACB YJEFN3 NDUFA2 NDRG4 LDOC1L D4S234E EIF1AX NDUFB8 IGF1 TMEM130 BEX1 PDP1 PPIA MTRNR2L8 COX6B1 OLFM1 LDOC1 QKI RTN3 RAN NGRN SLC38A1 SARAF MORF4L1 CAPNS1 EIF1B CMPK1 TOMM20 PRKAR1A C1ORF52 REEP2 FSTL5 FGF12 RPL6 GHITM ACTR6 NAT8L NDUFB11 GABRA1 APLP2 SLC9A6 SH3BGRL3 STMN2 MLLT11 GRINA BASP1 ACTR10 PPP2R1A YWHAG CDK14 DMTN CDK5R2 SYNPR SLC24A2 RPL32 NTN4 MT-ND4 CAB39 SUB1 ASIC4 NTHL1 MAPRE3 NELL2 BCAT1 PFN2 ISOC1 RP11-111M22.2 YWHAZ CDK5R1 THYN1 HMP19 NDUFA11 UQCRH TMSB4X CMAS NDFIP2 COX4I1 CNR1 ENOPH1 SYNGR1 PTHLH EIF4A2 SCD5 ERBB4 AURKAIP1 APP PAK1 MAP1LC3B CD24 FTH1 TBCA PTMA RPL18A PGRMC1 CDH8 KIF21A ENC1 NCALD CCDC85B SLC22A17 CHL1 SMIM13 PPP3R1 GNG2 INPP5F MAFB SEZ6L2 ARL2BP ARL6IP1 TPT1 CD63 GRM8 ARL4C TENM3 YIPF3 NDFIP1 FXYD6 CHRDL1 CERS6 GDI1 CALM2 CLIP2 PRDX1 MRPL37 NUAK1 IDS RPL12 TCEB1\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "VIP-expressing interneuron" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MT-CO3 MT-CO1 MTRNR2L12 MT-ND4 SYT1 RELN MT-ND1 CCK MTRNR2L8 CXCL14 MTRNR2L1 MT-ND3 MT-CYB MT-CO2 BIRC5 ZNF385D ITM2B GPM6A APLP2 MAP1B CNR1 MT-ATP6 RAB3IP DNER MTRNR2L6 MT-ND2 ATP6V1E1 SPOCK1 SCG2 AES MTATP6P1 GLUL SERPINI1 STX1B RPL13A MT-ND5 YWHAH EGFR APP RGS12 ATP1B2 ATP6V1A SYT4 PRPS1 RTN3 NXPH1 CALM1 ARL8B DLX1 MORF4L2 HNRNPA1P40 DNAJC5 RBX1 TSC22D1 SCAMP5 TOX2 NDRG4 QKI RPL32 DLD TMEM200C RTN1 PGRMC1 ADARB2 SMAP2 MTPN SYN1 CLU IMMP1L SGCD BEX1 CYB5R3 PI4KA DYNLL2 PPP2R2C YAE1D1 ARFGAP2 PEBP1 NDFIP1 CDH24 ALDH5A1 ATP5E DPP6 ARL6IP1 YWHAG CSDE1 CLIP2 MAPRE2 GRIN2A RPL31 YWHAZ RPL38 SLC12A5 TUBA1B EPB41L3 PDCD5 FAM219A PIP5K1B ATP2B2 MYL6 C16ORF13 CPE PLD5 BSN ITM2C ATP1B1 KITLG MAPK8IP2 RPL23A FKBP4 ERBB3 RASSF8 GABRA1 ACTB CHL1 GHITM GNB1 SLC1A2 EPHB1 GMFB BCL11B PPAPDC1A KIF1A RPL6 TUBD1 PPA1 APLP1 NCALD ATP6V0E2 DNM3 TGOLN2 OCIAD1 PLOD2 STK39 FSTL5 SCD5 NDUFA1 PHYHIPL CKB WDR47 GUCY1B3 SLC7A8 PSAP SNAPC5 UCHL1 CDK5 PHB SLC8A2 FAM134A TMX4 RREB1 SCN2B SLC25A4 DDR2 DKK3 SHISA8 MTX3 CADM3 ATP5I CPLX2 TCEB2 SLC9A6 TMSB4X BCAT1 PAFAH1B2 TUBB2A RPL13 SYT11 POLR2I GAPDH C12ORF57 PTPRZ1 NRIP3 RPS12 MT-ND4L TM2D3 RHEB TCEAL7 CUBN C6ORF1 CADM2 NDRG3 EIF1AX IGF1 DNAJC6 PRKAR1A FNDC4 ATP5C1 SYTL2 RAB3B RPL17 RPL17-C18ORF32 RPL21 ALDOA IDS TUBB AC244489.1 GTF2H2C_2 SNAP25\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "VIP-expressing interneuron" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MT-CO1 MT-CO2 MT-CO3 RAB3B ARL4C GPM6A MT-CYB ERBB4 RGS12 MT-ND2 MT-ATP6 SNAP25 MT-ND1 GUCY1B3 ATP6V1B2 CADM2 GRIN2A SYT1 MT-ND4 MAP1B ARL6IP1 ATP1B1 TTN NR1I3 RPL39 IDS DPYSL2 MAP1A KCTD12 SYNPR RTN1 APLP2 TPT1 GABRA1 STMN2 IGFBP5 TMEM130 LRP1B ELAVL2 ALDOC MTRNR2L1 NDUFA4 PRNP SHISA6 STK24 EFR3A GNB1 DKK3 ATP2B2 CHL1 MT-ND3 PRKACB PLD3 PNMAL1 SPOCK2 VDAC3 MTATP6P1 THSD7A RAB3C CCDC152 SLC6A1 RP11-219A15.1 LGI2 CD63 NPAS3 ARL2BP ALCAM CDKN2D NAP1L2 SEZ6 PROX1 HPCA CAMK2G C4ORF3 MFSD6 ACTB AES ASIC4 FXYD6 NELL2 GRIN3A TMSB10 HEPACAM NTN4 PREPL ATP6V0B ARFGAP2 SAMM50 CAPZA2 PPTC7 ARF1 CTNND2 PPP2R2C ATP5G1 GUCY1A3 DNM3 APP ARL6IP5 PFN2 SLC38A1 PSAP RAB2A NTNG2 SCN1A SCAMP5 COL12A1 EIF1B INPP5F PTGDS PIK3R1 ATP6V1C1 STX1B DSTN SCRT2 NRCAM VAPB CALM2 COX7A2L QKI UCHL1 GORASP2 RPL37A SCN5A MRFAP1 YDJC TOLLIP MAF CHRNA6 CAMK2N2 DCC CNTN1 ARL8A SYNJ1 RPL26 ATP2A2 BEND4 REEP2 YAF2 RPS4X RPS6 FAT3 RPL38 CCDC141 CDH8 PPP3CB MTCH1 RTN3 OLFM2 GPR98 HMGCS1 RAB1A RAB6A COBLL1 NUAK1 GDF10 HK1 KRAS ATP6AP2 GPCPD1 RPL35 CPE STMN3 MTRNR2L12 RAB11A ADAM33 STMN4 CDK5R1 PTK2B FGF12 HMP19 TCEA2 CEND1 FAM3C CA8 FGF2 HDLBP NDUFB5 CLU PLAUR ATP9A KIF7 ACTR10 NPTN TIMP2 SLC12A5 RAN KIF21A ITM2B MPP1 MAPRE2 ACOT4 UQCRH CALM1 NDUFB8 PAFAH1B2 RTN4 ATP6V0E2 TOMM7 SUB1 GABARAPL2 BIRC5 GPRC5B TSPAN7 MTRNR2L6 PRDX1 COX7C ADAM23 COL11A1 RPS28 COX4I1 THY1 ADSS TUBB3 PSMC1 PET100 NSF RPL36A TUBB AC244489.1 TBC1D15 DNAJC21 CFH\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "VIP-expressing interneuron" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: SLC6A1 SLC22A17 DNAJC21 ZNF385D SNAP25 THSD7A CAMK2G CDK5R1 MT-CO3 SCN3B CXCL14 TRIM36 ATP1B1 HSP90AA1 CYFIP2 ITM2B PROX1 MAPK1 ELAVL2 TPRG1L MAPRE3 RPRM NMNAT2 KCNC2 FSTL5 SCD5 MRPL37 ATP9A SSTR2 ADAM23 MT-ND2 TPT1 GDI1 SYNPR MT-CO2 KLC1 SERINC1 STMN2 RP11-111M22.2 INPP5F NPAS3 RPL41 CPE APLP2 PTHLH RPL13 AP2B1 KIF5A RAB1A BCAT1 MYEOV2 FKBP1A POLR2K INA ISCA1 ARL6IP1 PNMA2 PARM1 RTN4 PRNP RAB3IP ZFAND5 VSNL1 GPM6A SCN7A RPL32 RORB OPCML CADM2 PDLIM5 RPL15 PPP3CA FAM127A PCDHA4 SCN1A TSPYL1 NCOA4 SLC38A1 BIRC5 GSK3A ZBTB20 HSP90AB1 CLSTN1 SYT4 HDDC2 CYCS HDAC1 OXR1 GRIN2A OLFM2 ARL8A MAST3 TMEM59L TM2D3 PTPRN2 EIF4A2 KCNAB3 ERBB4 C12ORF57 MT-CO1 MYL6B HTR2A FAT3 UBE2V2 ATP2B4 CHN1 HTR2C JUND MAP1B IDS LMO3 RPL6 NSF RPL13A HNRNPA1P40\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "VIP-expressing interneuron" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MT-ND4 MTRNR2L1 MT-CO3 TSHZ2 SYT4 IQSEC1 CADM2 WFS1 NAP1L3 MT-ATP6 MT-ND3 GAD1 MTRNR2L6 PARM1 SYT11 MAPK1 PPP3CA DKK3 PSAP UQCRH NDUFB3 MORF4L1 NCEH1 LMBR1 D4S234E VPS35 ENC1 SPRTN ATP1B1 MBP CRIM1 CCK GAPDH BIRC3 VWC2L MAP1B MTRNR2L12 LYPD1 ELAVL4 THSD7A CNTNAP5 CLU ARPP19 RAB11FIP5 RGS12 MT-ND5 CPLX2 SNAP91 CPE ASAP1 ATXN10 PFKP ATP6V0E2 SARAF RHOA ARHGAP35 RPS4X ROBO2 ATP2B2 HN1 GPR56 SCD5 MT-CO1 ACTR10 TUBB2B STMN2 PPP1CB ATP6V0B NHP2 GRIN2A HSP90AB1 PLCB1 C1ORF52 BIRC5 YWHAG PHYHIPL ATP5A1 PNMA2 ZFAND5 GPM6A TSPAN7 NFIA ACTB SLIT1 PDE3A PI4KA RNF11 SLC24A2 TIMP2 CDH13 SYT13 NBL1 VDAC2 TSPO APP ARL6IP5 IGFBP5 TP53I11 RPL38 AP2B1 NSF RAB3B ZNF385D ESCO2 SYTL2 TBC1D15 DNAJC21\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "VIP-expressing interneuron" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MT-CO1 MTRNR2L1 MT-ND4 MT-ATP6 ATP1A3 MT-CO3 RAB3B ATP1B1 SYTL2 MTRNR2L12 PEG10 MT-ND2 RPL35 PROX1 ASIC4 MT-ND3 PPP1CB GPM6A TIGD4 CREG2 CEND1 MT-CO2 MTRNR2L6 RP11-219A15.1 KIAA1211 HDLBP CXCL14 ITFG1 PARM1 PTMA SLC6A1 INHBA NDRG3 UBE2N TUBD1 ATP1A1 RGS16 HAPLN4 RGS12 SAP18 SPTBN1 PTN STMN2 FAT1 RPS28 APP PRKCE NPTXR ATRN MTATP6P1 SARAF ZBTB20 COX7C PRDX3 NXPH3 OLFM1 SOX2 ANKRD18A PPP3CA MAPK1 SLC12A5 PTHLH SCN2B AP2S1 HTRA1 B3GNT1 INA PPA1 PNMAL1 MAOB PPP2R1A SPOCK3 PLD3 TIMP2 COX6A1 HRH3 TCEAL2 KCNC2 MTRNR2L8 TMEM130 GRIN1 BASP1 FTH1 ATP5A1 GABRA1 EPHB1 PSMC5 YBEY EDIL3 PCDH17 ADARB2 ATP6V0E2 RHOB VWC2L TLN2 SLIT1 FXYD6 MT-ND4L STMND1 BSCL2 NR1I3\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "VIP-expressing interneuron" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: VIP TSPAN7 SYT1 SCG2 SPOCK2 ATP1B1 RAB3B TMSB4X STXBP1 APP RTN4 RPL35 SERINC1 CLU FXYD6 NPTXR RPL41 TBC1D15 RTN1 PPP2CB SYNPR MORF4L2 KIF1A ERBB4 MT-ND4 HMP19 CTSD SEZ6L ELFN1 ADAMTSL1 NCAM2 PRKACB DLX1 MAP1LC3B TMA7 EFR3A ARL4C TXN RTN3 B3GNT1 VAMP2 REEP5 PLD3 EID1 CALM1 ARL6IP1 UCHL1 NGFRAP1 ENO2 STMN3 SYN2 BIRC5 CPLX2 PNMA2 SCAMP5 ZNF385D RP11-20I23.1 ATP6V0C ITM2B KCNC2 TUBD1 CHRDL1 SLC39A10 CSRP1 PRUNE2 VDAC2 MTCH1 ATP2A2 GABRA1 FIS1 CLIP3 TRHDE RRM2B RPL32 PTGES3 MAP1B APLP2 HTRA1 CBLN4 THSD7A EIF1AX ENC1 SYT17 MMD CADM3 PPP2R2B SYNPO DCLK1 SYT4 NHP2L1 SLC22A17 UQCR10 QKI ATP6V1C1 DIRAS1 ENOPH1 SLC38A1 RPL12 OPCML LGI3 MPP1 PGK1 TUBA4A DKK3 KIFAP3 PCDH8 PSMC5 SRP14 NACC2 C18ORF32 MFN2 PJA2 BEX2 FTH1 RPS6 HEATR4 PRNP EIF4A2 NPAS3 CALM2 SEMA5A EIF1 KLC1 TCEAL2 SEMA4G VSNL1 C9ORF16 VGF TIMP2 RABAC1 ATP1A1 TSPYL1 THY1 FIGN NAP1L3 YWHAH TOMM22 CDH13 MYL6B ADAM33 GUCY1B3 LIMK1 WDR47 DPYSL2 PGAM1 TBCB SNAPC5 PPP1CB RPL13 SKP1 FAM19A2 TMSB4XP4 MAP2K4 C2ORF80 BAD PROX1 WBSCR17 PCDH19 MT-CYB FBXW11 NPTX1 TCEAL7 MT-ATP6 SULT4A1 PPP2R2C SIRPA CNR1 PLCB1 NDUFAB1 FABP5 PPP3CB TUBB2B ATP6AP2 RPL26 PGM2L1 ENSA ANXA7 TOMM7 RPL13A ATP1B2 HIF3A SYT11 BSG SLC10A4 RPL38 COX4I1 PARM1 RAP2A OCIAD1 ESYT1 GDI1 MT-CO1 ATP5E SUB1 DIRAS3 ALDOC SEC61G COL11A1 NFIA PTPRN NAPB SLC6A17 EIF1B LANCL1 BCAT1 YWHAG FXYD7 PPP2CA AP2B1 TRMT112 RP11-111M22.2 CA10 UBQLN2 OR6D1P ROBO2 ATP5J PNMAL1 COL5A2 RAB6B ST18 RP11-195F19.5 RPL18A PAFAH1B2 ZNF536 WASF1 CRIM1 VPS35 CLTB HSP90AA1 ATP5G3 NDUFB2 OXR1 TF CFH RNASEK-C17ORF49 ALDOA AC244489.1\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "VIP-expressing interneuron" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MT-CO3 MT-ND4 MTRNR2L12 MT-CYB MT-ATP6 MT-ND3 MT-CO2 MTRNR2L8 MTRNR2L1 MT-CO1 MT-ND2 MT-ND1 PRNP RPL38 MTATP6P1 MT-ND5 GRIN2A PJA2 SV2C PEG10 HSP90AB1 DNER GAD1 DNAJC6 PREPL ZNF385D RAB3B RGS12 ATP6AP1 RELN HS3ST5 ARL6IP5 ITM2B GUCY1B3 CKB PCSK1N JUND YWHAB CALM3 KIF21A PCDHA4 PNMA2 CAP2 RPL13A SLC9A6 PSMD12 ATP2A2 SCAMP5 HS6ST3 NARS ARL6IP1 SPOCK1 ELAVL4 SNAP25 FSTL5 NDFIP1 SLC12A5 CERS6 MAP1B APLP1 ERBB4 RTN1 COL25A1 GPM6A MYL6 ROBO2 RPH3A SYT4 TBC1D15 IDS GAP43 SMS ANAPC13 DISC1 ZFAND5 COL5A2 RAB6A PGK1 PSMD8 SFRP1 GUCY1A3 ATP2B4 SERPINF1 NPTN PIK3R1 ARHGDIG NR2F2 HSP90AA1 RASSF8 ALDH5A1 SLC39A10 OLA1 FARSA RPS12 RPL13 OAZ1 RAB3C CTNND2 ATP6V0E2 TSPYL4 KCNC3 HTR2A QKI TAF7L ARL4C SERINC1 RTN4 SARAF ERH RAPGEF5 ADAM23 MAP2K1 NDUFA4 RPL10A LINGO1 HPCA GABARAPL1 RPL7 CDK17 PSMC3 PTMA BSG STMN3 GPR56 UQCRB SERPINI1 YDJC CNR1 THY1 MTRNR2L6 CAPZB ATP6V0C PELI2 UQCR11 PPP2R4 TIMP2 KRAS PCDH18 FAM134A PCYT2 SYN1 SLC1A2 RPL21 PNMAL2 RP11-20I23.1 STMN1 TMSB4X PCDH17 FSCN1 NXPH1 NRCAM SCG2 PDGFD TMEM59L MAPK1 NMNAT2 CHL1 EPHB6 RAB2A WASF1 SCD5 FGF12 TSPYL1 MIR6723 CYFIP2 ATP1B1 MTND1P23 STK24 MT-ND4L GDI1 MAPRE2 TUBA1B SLC25A6 KCNAB1 AES ATP5A1 ATP9A APLP2 OAT OXCT1 PTCHD4 GRIK1 SPRYD3 PRPS1 PGRMC1 MPPED1 MEGF11 ARF1 STXBP1 PHYHIPL CST3 CSDE1 NRIP3 CCDC184 IGF1 MAGED1 MBOAT7 SSBP3 HDLBP IQSEC1 CALM2 CNP TERF2IP CHN1 PNKD NHP2L1 COPG1 SYTL5 YWHAZ KIF3C PTPRT ABHD14A SNX17 LAMTOR5 ATP1A3 RPS28 ISCU DOCK10 EPB41L3 UBE2L6 CFL1 RPS2 EGFR NDRG3 SYT11 NME1 TGOLN2 CALM1 FAM174A FAT1 TPI1 RPL35 SSTR1 VDAC1 HNRNPH2 SLC6A1 APP TMSB4XP4 NCBP2-AS2 PTPRN EID1 VAMP2 CNRIP1 FTH1 RPL37A RPS15 DPP6 PPIA RPL3 RPL18A ATP6V1G2 GTF2H2C_2 AC244489.1 PCDHGA6 PCDHGA10 PCDHGA5 SYTL2\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "VIP-expressing interneuron" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: RELN MT-CO1 DNER MT-ATP6 MT-CO3 SNAP25 MT-CYB CXCL14 CLU SCG2 FXYD6 SV2C EIF4A2 SPOCK1 SPOCK3 MT-CO2 CLSTN1 RTN3 MT-ND4 SLC6A1 RTN1 CHL1 PRNP ATP6V0B SARAF GABRA1 NCAM2 ATP1B1 SST BEX2 GAD2 DPYSL2 RPL41 SERINC1 MT-ND3 MT-ND2 DYNLL1 RAB3B TBC1D15 CERS6 TMSB4X HSP90AB1 HS6ST3 CCT5 HSP90AA1 NPTXR HMP19 FAIM2 SLC22A17 DPP6 RPL38 DOCK10 UQCRB RPL13 RPS15 TOX3 RTN4 FSTL5 TMX4 NR1I3 FXYD7 PLD3 MPPED1 SYN2 CHGB STXBP1 GRIN2A EPHB6 IDS RP11-20I23.1 RPS28 GAD1 GNB1 RAB6B RPL3 MORF4L1 LL0XNC01-16G2.1 BSG SCN1A PRKCB SCN2B ATP9A PTCHD4 BASP1 GPM6A ENO2 TSPAN7 LPPR4 ATP1A1 NHP2L1 ATP6V0C RGS12 ATP6V0E2 UCHL1 AP2B1 SEZ6L2 ATXN10 PSAP ATP1A3 RPL13A PCDH17 ATP6V1A EIF4G2 CNTN1 CALM2 STMN1 MORF4L2 PGK1 EGFR OR6D1P ARFGAP2 APLP2 DCLK1 ROBO2 CAMK2N2 NMNAT2 MAP2K1 KIF1A TRAPPC1 FKBP1A RABAC1 PEG10 C14ORF132 RAP1GAP2 SELT GNAQ YWHAQ PTMA SCOC RPL12 SCAMP5 NAP1L5 RHOB ALCAM SLC1A2 OPCML C11ORF31 APBB1 ERBB4 ENSA PNMA2 NIPA1 TUBA1B PBXIP1 EGFL7 MT-ND5 ARL4C FAM134A LUZP2 RAB3A PRDX3 PRKACB DHCR24 SLC10A4 CADM2 COL5A2 QDPR EEF1A2 TRPC3 PGRMC1 TMEM179B EFR3A MYL6 ITM2B B3GNT1 TPT1 RAB7A LAMA2 HPCA DKK3 NRSN2 ATP6V1E1 PCDHB10 AP2S1 ID2 UQCRH MT-ND1 NME1 DDR2 NCEH1 ATP2B2 SYT11 FTL GSTO1 ARF3 PEBP1 SPATA13 NACC2 SLC40A1 MAP1A LANCL1 MTATP6P1 UBQLN2 TOMM7 LMBRD2 AURKAIP1 RPS27A RPL21 DNAJA1 WBSCR17 NDUFA4 ATP6AP1 BEND5 FGF12 MAPRE2 TCEB1 PRDX2 MACROD1 CLIP3 RPS10 UQCRQ TMEM59L NBL1 RPL32 VSTM2A MYO16 MTRNR2L1 VCAN UQCR10 ATP6AP2 TOLLIP ARL6IP1 RAB3C TPPP ATP5I PPDPF GRINA MTRNR2L12 NDRG4 BEX1 GRIK1 FAM3C SLC7A8 NPTN MDH2 PRKAR1A SRP9 GPNMB PHYHIPL DUSP2 PREPL USP5 ATP1B2 NDUFC2 RP11-111M22.2 SYT4 PJA2 GUCY1B3 SSTR1 PRKCE ETV1 SOX9 TBCB PSMC5 RNF11 KCNC2 PGAM1 RREB1 ADARB2 MTCH1 NTHL1 SELM PLS3 CD59 SERPINI1 VDAC3 HSPA8 GAPDH SLC17A7 APP TUBB2A SYNPO NAPB KIF21A INPP5F TPI1 MYO1B MTRNR2L8 CNR1 ACTR10 VGF REEP5 LYPD6 DDN KCNC3 PCMT1 ELMO1 C4ORF3 FBXL16 AKAP12 COX7A2 SERF2 CTNNA2 ACTR6 SLC12A5 NDN SLC25A6 APLP1 CDS1 CCK NDUFB11 PFKP ACTB HRH3 WASL LSM4 RHBDD2 ATP2A2 ATP5A1 BLOC1S1 RCAN3 RPL10A CKB NGRN SERINC3 STMN4 AK5 MTND2P28 IMMP1L ATP5C1 SUSD4 BRK1 REPS2 NDUFB3 COX6A1 RPS19BP1 CAPZB PTPRN RCAN2 RPL11 CAMK4 CDK5 PITPNA NUAK1 SALL2 PKM KIT CST3 SLC25A4 SPRYD3 RPL8 NXPH2 NDUFA13 PNOC GPCPD1 NDFIP1 MAP1B BCAP31 PRKAR1B PSD3 RPS26 TMEM150C NPAS3 CACNA2D2 FAT1 TERF2IP CPLX3 AZIN1 PGM2L1 C18ORF32 SYNJ1 SCN3B YBEY SNRNP25 SUCLA2 RFK AP2M1 PNPLA5 SYT1 BSN BTBD11 TUBB ALDOA B2M RNASEK-C17ORF49 GABARAP THY1 PCDHA4 PCDHAC1 PCDHA10 PCDHA9 HNRNPA1P40\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "VIP-expressing interneuron" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MT-CO1 MT-ND4 MTRNR2L1 MT-CO2 MT-CO3 MT-ND1 MT-ATP6 MT-ND2 MT-CYB SYT1 CADM2 ZNF385D RAB3B MTRNR2L6 ASIC4 RGS12 MTATP6P1 DNER PCDHA4 RPL13A YWHAG C14ORF2 ATP1A3 RTN4 RNF11 TMEM160 PPP3R1 MT-ND3 MAPK1 CAMK2G CX3CL1 MTRNR2L8 NR2F2 RPL31 MORF4L1 CALM1 RPL23A RPL32 NACC2 SLC40A1 PREPL EID1 DLX1 VAPB AP2B1 PROX1 TMEM150C GPM6A LMBRD2 RTN1 CLU TMEM258 RELN COX5B MTPN NDUFA13 VDAC3 RPL26 ROBO3 SPOCK2 SEZ6L RPL35 USP27X SCOC MTRNR2L12 GTF2H2C_2 SYT11 NCOA4 HEPACAM PSMD8 PGRMC1 PCDH19 ARL4C SYNPR YWHAB VWC2L THY1 MRPL51 RPL13 PLCB1 B3GALT2 CNDP1 APP HSP90AB1 CERS6 IGFBP5 SNCB TPI1 GAD2 PPP3CB SNX3 COX17 UQCRH CLIP3 SLC9A6 OPCML ISCU RFK ELAVL4 DNAJB6 PSAP VIP PAM OR6D1P GRIN2A PHYHIPL MAP1LC3A RPL15 TUBA1B FAIM2 GAPDH WASL ALCAM PRKACB NDFIP1 TM2D3 CTBP1 EDIL3 ATP1B1 ADSS MAF PCSK5 KLC1 GABRA1 SUSD4 GRIK1 TOMM7 PCGF1 CAB39 PDE1C PCDH18 BTBD1 SLC6A1 RTN3 CNR1 RHEB ATP6V1C1 TRMT112 PITHD1 TUBA1A PNOC RPS28 TBCA PINK1 POLR2M GNG2 COX14 RSL24D1 RAP2A NSF GABARAP RPL18A CFH PTCHD4 RP11-219A15.1 ALDOA PCDHGA6 PCDHGA10 PCDHGA5 TF SYTL2\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "VIP-expressing interneuron" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: ATP1B1 MT-CO2 SNAP25 MT-ND4 MT-CO1 MT-CO3 ZNF385D IGFBP5 SYT1 CXCL14 MT-ND2 SLC6A1 GAPDH PRKACB PPP3CA VIP SYNPR RTN4 PTMA CALM1 ARL6IP1 MAP1B CAMK2G EIF4A2 CALM2 APP DNER NPTN TSPAN7 REEP5 EDIL3 BIRC5 CALM3 PJA2 YWHAZ OCIAD1 ATP2B2 SERF2 MT-CYB RPL26 EPDR1 RGS12 RPS3A MTRNR2L1 PREPL YWHAG PRNP ROBO2 MT-ND3 DCLK1 CADM2 RAB3B ATP6V0C RP11-20I23.1 VAMP2 CLU MTRNR2L12 OXR1 POLR2I ITM2B GPM6A SKP1 ACTB OLFM2 SYT11 ARL1 PPIA HSP90AA1 PRKAR1B RPL3 CKB GABRA1 BSCL2 HRH3 RPS4X MORF4L1 GNB1 RTN1 ARL6IP5 ATP6V1C1 FXYD6 GPX4 ZFAND5 TCEA2 FGF12 KIF5A RPL15 RFK CCDC184 TAC3 MT-ND1 ENC1 DIRAS1 NDRG4 SPOCK3 TAGLN3 RPL8 IDS MTRNR2L6 DNAJC21 RPL38 GPRC5B SNRPN SCOC GRIN2A GNG12 THSD7A SARAF RPL41 ACTG1 CREG2 IGSF21 PKM PAFAH1B2 TUBB2A NGFRAP1 NDFIP1 GAD1 UCHL1 MTRNR2L8 YWHAH TOMM70A CRIM1 GOT1 TMA7 SIRPA COL21A1 RPL37A UQCR10 PLD3 ADD2 PNMA2 SNCB CDK5R1 GOT2 SPCS2 MAP1A DCTN1 MAF PPTC7 VAMP1 PEA15 NFIA GABARAPL2 IQCK ENO2 HPCA TUBA1B PRDX1 RAB1A RTN3 EFR3A NAP1L3 OLFM1 FAIM2 MT-ATP6 SERINC1 RAB3C BNIP3 TUBB4A CITED2 ARF3 RNF144B PSMA7 ATP5F1 CHRM2 DPYSL2 RPS28 MSMO1 PREX2 SCN1A FIGN RPL31 TSHZ2 CPLX1 CERS6 RP11-111M22.2 ERBB4 CFL2 CNTN1 SNAP91 FTH1 SUMO2 ATP5B NAP1L5 PINK1 KCNC2 RAB6A CD63 USP5 MYL6B TCEB2 RPS15 KIFAP3 EPHA6 PRUNE2 GPR158 YWHAB MTATP6P1 SPARCL1 CD99L2 WASF1 GNAQ TMSB10 KIF1A NDUFA11 CMAS PSAP ATP2A2 AES LANCL1 CMPK1 ALDOA NR1I3 ATP6V0B C1ORF52 PPP1R7 MAPRE2 RHEB SUMO1 RCAN3 GHITM BTBD11 TMEM160 IL33 MAP1LC3A FBXO8 ATP5I PIP5K1B ALDH5A1 NDUFAB1 VSNL1 GRIP2 MPC2 ATP5O MRFAP1 BLOC1S1 NRSN2 RP11-632C17__A.1 MAPRE3 PLCB1 MRPS21 NCDN RPL36A SCN2B APLP2 COX5A DYNC1I1 RAB5C B3GNT1 LPPR4 CHGB ACTR1A LIN7B PHB HSPA8 LGI3 DNAJC6 NDUFC2 MRPL12 GDA REEP2 CLTB C14ORF2 ADAM23 THY1 C19ORF53 VWC2L SCAMP5 MORF4L2 GNG3 COPG1 SLC7A8 DRAP1 TMEM130 PAM GNG2 ENO1 ARL8B C4ORF3 ARPC4 IDH3A PGM2L1 ATP5A1 ITPR2 PCSK1N GDI1 CLTC BEX2 PAPPA YAF2 SYNJ1 FAM134A D4S234E MGST3 MFN2 RPLP0P2 TUBD1 TMEM14A CRYAB AP2M1 BAI2 NAA38 PCBP1 HMP19 ATP6AP2 PLEKHF1 NAP1L2 SQLE SULT4A1 TMEM258 MTPN AP2S1 DMTN IGF1 ATP5G3 CSDE1 LRRC59 PSMD12 POLR2M SIRT4 CTSD GRIN1 SLC25A5 CAP2 MAP7D2 CAMK4 MAGED1 SYN1 ELAVL2 PPARGC1A FAM19A2 FABP3 CHL1 PRKCB GPX1 PRKCE HAPLN4 AP1S1 UQCRC2 HOMER1 PHYHIPL RASSF8 GSKIP GREM2 COX6B1 CNR1 SLC25A6 SEZ6 LMBRD2 DNAJB6 TSPYL1 TMX4 RAB3IP PFDN4 TXN LAMTOR1 PGAM1 TIMP2 RPL39 WBSCR17 CTBP1 RPS26 NHP2L1 NDUFA4 SPTBN1 PPP2CA CORO2B UBC TMEM141 BAG4 HEPACAM HSPB1 UQCRH TRIM37 NDUFB8 IGFBP6 SLC9A6 PPP2R2C RAB6B ATOX1 MAGED2 CLDND1 SLC38A1 SEMA5A NAT8L KLHL5 GAP43 EPS15 RPL11 FBXW11 PCDH18 CDC42SE2 TOMM34 CLSTN1 PFN1 CCK AP2B1 CCDC85B UBA52 PARM1 FAM149A SEZ6L STXBP1 SLC24A3 NR4A1 PTPRN2 CAMKK2 KIF3C SUMO3 TCEAL7 SCG2 C6ORF1 FBXL16 RAB11A BCL6 CPE ATP6V1E1 KCNK1 ALDOC RASGRF1 RELL2 CRIP2 SRP14 INPP5F DLX1 GDE1 TCEAL3 TSPYL4 COPE RPS2 APEH ETS2 LGALS1 HPS6 PPP3CB CNTNAP5 SYPL1 SH3GL2 ZNF804A COPRS UBL4A LGI2 RAB2A NKIRAS1 FAM131B CHP1 TM2D3 NELL1 ATP6V1F TOMM20 FBXO2 MAP1LC3B AZIN1 PPP2R4 TUBB TKT VDAC1 NFE2L1 CTNNA2 STMN4 SCD LRP1B ASIC4 MDH1 MT-ND4L RBX1 CALN1 CLDN10 RPL7 HOPX AKR1C2 HS6ST3 ACTR10 PROX1 SRR ARPP19 TMOD2 BCKDK GAD2 INSIG1 PTPRN RGS16 UBE2M SELM TMEM59L SYNPO DKK3 ATP6V1B2 TCEB1 MARCKSL1 COL11A1 ATP1A1 OPA1 UQCRB CAPZA2 PPA1 NCEH1 HSP90AB1 PGRMC1 CDH13 CLIP3 EGFR KCNAB1 PPP1CB CD163L1 KLC1 ADAM33 TRMT112 ATP5G1 CRKL RAPGEF5 RNF208 OAZ1 NEGR1 NAPB KCNAB3 LINGO1 SLC1A2 YJEFN3 SCD5 RPL32 PTGDS RELN DYNLL1 WFS1 RPS27A ANXA6 FARSA PRDX2 AK5 B2M CABP1 NPR3 DSTN PIN1 OAT AP3S1 SCN1B GSTO1 CYFIP2 FASN SLC35B1 RNF11 C18ORF42 PLD5 NRIP3 NDUFA13 RPL23A ATP6AP1 NMNAT2 HPRT1 SUCLA2 GRIK1 ATP1A3 TBC1D15 RPL18A RP11-219A15.1 RNASEK-C17ORF49 AC244489.1 PCDHA10 PCDHAC1 PCDHA9 PCDHA4 PCDHGA6 PCDHGA10 PCDHGA5\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "VIP-expressing interneuron" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MT-CO2 SNAP25 TAC3 EIF1B ATP1B1 PEBP1 FAIM2 INPP5F NDRG4 YWHAG ENC1 ZFAND5 PSAP MT-CO3 SYT4 HSP90AA1 SPOCK2 PCDHGA6 KCNAB2 GAD1 GAPDH VIP CREG2 GPM6A RNASEK-C17ORF49 SSTR2 PITPNA CADM2 SAP18 STX1A ACOT7 C9ORF16 PSMC1 JUN DIRAS3 PPIA ATP9A C14ORF2 MTCH1 SEPT4 MAP1B TSHZ2 PTMA FASN COL11A1 TENM3 GUCY1A3 HMP19 REEP5 CALM3 FSCN1 GNG12 ATP1A3 GRINA RAB11FIP5 RPL11 RAB3A SLC6A1 MLLT11 NR2F2 ZNF385D MT-CYB NDUFB1 KIF1A CPE THY1 NFE2L1 MT-ND3 ADAM33 COL21A1 CLU DNM3 RNF181 RPL3 NPTXR DPY19L1 CCDC184 ATP5E ELMO1 GRIN2A IDS TMEM35 CDH13 SPOCK3 POLR2K APLP1 SERINC3 RTN4 BAG4 DNER RPS26 CXCL14 NFIA ADAM23 MT-ND2 SLC1A2 SDF2L1 CLTA RPL39 CYB5R3 UBL5 ARPP19 TMEM130 MAPK1 PAK1 PDE1C EGFR FTL DCC CALM2 SNX3 CD99L2 NCDN MCTP2 THSD7A TMEM200C FNDC4 NDUFB10 TUBB2A VAMP2 GUCY1B3 HAPLN4 HMGCS1 ANXA7 RGS12 NPTN TPGS2 MDH2 MT-ND4 ARHGAP35 COL9A1 RAB3IP RPS5 FIGN CLSTN1 PLD3 RTN1 TMTC4 NAPA SQLE CACNB1 DNAJC6 SLC6A17 TSC22D1 ARL4C UROS HLA-B NGRN RPL21 RPL13A CFH RPL17 RPL17-C18ORF32 TBC1D15 DNAJC21\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "VIP-expressing interneuron" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: CCK SYT1 CNR1 ATP1B1 TMSB4X FAIM2 FXYD6 RAB3B NRCAM RPL23A CLU MYEOV2 ATP2A2 SERPINI1 DPP6 APP RAP1GAP2 PCDH8 HMP19 SYT6 SGCD SYTL2 ZNF385D PLEKHD1 ATP6V0E2 GAD1 DKK3 YIPF3 COX6C SPARCL1 THY1 CKB ANXA7 MT-CO2 SYT11 OR6D1P CAB39 RPL11 KCNF1 ROBO2 RPS3A SELT ATP5G1 MRPL51 RTN4 UCHL1 CHRNA2 RAMP1 KIF21A ARL4C TNS1 ATP5J MORF4L1 SPTBN1 FTH1 CLSTN2 QKI CALM2 MTRNR2L1 RTN3 BTBD10 MRPS21 LMCD1 NR2F2 KIF1A ITM2C CLPTM1 CLSTN1 CAMKK2 SPOCK3 ACTR10 KLHL5 PSAP NAPA PPIA DNAJC5 ITM2B FTL PNMA1 RPL26 CALM1 PET100 PRNP NDUFC1 NDUFB8 PARM1 TMEM35 PPP2R1A EPDR1 RPL31 ZBTB18 PI4KA RAP1GDS1 FAM3C BEX4 NTNG1 PCSK1N SRM RPL6 NECAB1 CYB5R3 VSTM2L SYNPR C1ORF56 MAST3 ATP1A1 ARL6IP1 SPOCK2 WNT5A ACTB DYNC1I1 KCNA5 COX7A1 NDRG4 GPM6A SNAP25 UBE2N CALM3 DPYSL2 USMG5 DNER ATP10A NCALD PTPRZ1 ENSA TPT1 UBC COX6A1 NEGR1 RPL37A CLDND2 C6ORF1 NPAS3 RTN1 RPS28 NAPB RP11-111M22.2 BCAP31 HMGCR MAP1LC3A SYNGR1 C19ORF70 UQCRQ APLP2 ATXN10 DHCR24 SCD5 SLC6A1 ATP6V0C IDS RP11-20I23.1 RPL13A RPL21 PCDHGA10 PCDHGA5 PCDHGA6 DNAJC21 TBC1D15\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "VIP-expressing interneuron" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MT-CO1 MT-ND4 MTRNR2L12 MT-CO3 MT-ND1 MTRNR2L1 MT-ATP6 CNR1 MTRNR2L8 GAPDH CXCL14 MT-CO2 ATP1B1 MT-ND2 MT-ND4L MT-CYB SYT1 RPS15 CCK MTATP6P1 ZNF385D MT-ND3 CPLX3 PCDHGA5 ADARB2 MORF4L1 SUCLA2 OXR1 SCG2 SLC22A17 CPE RPL36A HSPA4 PSMD12 SEPW1 METTL7A APP RGS12 EIF4A2 MAF PACSIN1 PGM2L1 FABP5 RTN3 GFRA2 LYSMD2 CALM1 ADAM33 DPP6 CALM3 CRIM1 DNER PCP4 RAB3B SYTL2 IDS MTRNR2L6 RAB6A DOCK10 PBX3 SSBP3 TSPYL4 UBB MDGA1 RFK DPYSL2 CLTC ATP6V1B2 HMP19 EHD3 MAGED1 D4S234E PLP1 AP1S2 PRKAR1A HIF3A CDK17 SLIT1 PPP2R2C TOLLIP MYL6B PTPRN UCHL1 TRIM37 H2AFZ TSPAN18 RTN4 PSAP RPL8 TUBB2A VSTM2A SNAP91 PSMD2 SNAP25 KIF1A ARL4C CERS6 CAMK2D PHYHIPL ACP1 MRPL55 UQCRC2 ATP5A1 NDRG4 PTPRZ1 COX5B STC2 GDI1 YWHAB CREG2 PGRMC1 NCALD SUMO3 ENOPH1 PTMA ENO1 RPS2 SCOC ACTR10 FKBP8 CBX6 PRDX3 FGF12 ELAVL2 GMFB IQCK TMEM130 PAFAH1B2 MAPK1 BAI2 RPS6 PCGF1 PRNP COX7C KIF21A NDFIP1 DYNLL2 ZNF536 NOP10 SCN1A MYO10 KLF2 ARL6IP1 RPL3 CRYAB DNAJC4 TPPP RLIM DKK3 KLC1 SLC9A6 YJEFN3 ARF3 PPP2CB FTH1 FSTL5 BCAS2 CHST11 HINT1 RABAC1 BEX1 SRP9 USMG5 ETFB GABRA1 ATP11C UBA1 TMSB10 GGNBP1 ZCCHC12 SLC25A22 NCOA4 TAGLN3 HGFAC GPR98 PNMAL2 PSMA7 CTNND2 LAMTOR2 SERINC1 CALM2 SLC7A8 GRIN1 SEC61G ATP1A1 STMN1 SYT11 ACTG1 TUBA4A ATP6V1C1 NRCAM SH3RF1 TMX4 AES CDKN2D TENM1 YAF2 NAPB DNAJC6 SCN2B CNTN1 TUBA1B ZBTB20 MT-ND5 RPS3A LMO3 PCDH17 MRPL52 GHITM TSHZ2 MRPS7 APLP2 IGF1 B3GNT1 NAP1L2 ARFGAP2 RNASEK-C17ORF49 ATP1A3 RPL13A HNRNPA1P40 PLEKHD1 GTF2H2C_2\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "VIP-expressing interneuron" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MT-ATP6 MT-ND3 MT-CO3 MT-ND1 MT-ND4 MT-CO2 MT-ND2 MT-CYB MT-CO1 SLC1A2 MTRNR2L12 MAP1B RTN4 MTRNR2L1 CALM1 SYT1 PTMA ATP1B1 SPOCK2 ARL6IP1 ATP1A3 PRKACB SOX9 PRNP PEBP1 MTCH1 NFIA ARL4C MT-ND5 NDUFB8 DYNLL1 OXR1 ZFHX4 MT-ND4L ZNF385D MTATP6P1 CLTC SERF2 RTN3 MGST1 PCDH17 CADM2 TXNIP ERBB4 ATP5A1 CPE PREPL THSD7A MPC2 CREG2 ALCAM STRAP ARL8B PRUNE2 SCN1A CLSTN1 METTL7A PTPRN2 NDRG4 RAB3C GABRA1 GPM6A KCNC2 DPYSL2 SLC24A2 PKM DMTN TMEM200C MT2A DKK3 AZIN1 PNMAL1 CDH7 ENC1 PPIH EIF1 KLC1 NR2F2 RPS28 PPP3CA EIF4A2 ATP1B2 SLC1A3 CERS6 SYNPR CLU COX5B IMMP1L STXBP1 RPS12 BSG TF NR1I3 RP11-219A15.1 AP3S1 GABRG1 EZH2 HIF3A PPP2R2B PTGDS SLC39A10 GPRC5B SPOCK3 ANKRD18A DRAP1 FTL OPCML DCLK1 SLC6A1 MRPS21 RPL41 COX7C WBP2 PPA1 OAZ1 DLC1 RPL37A SLC38A1 CABP1 VAT1L CYFIP2 C12ORF60 PLD3 PHPT1 RPS27A TSPYL4 FAM219A ATP5J SUB1 PPP2CA UBC MTRNR2L8 ATP5E SNX10 YWHAG MT3 CNR1 DNM3 KMO MYEOV2 MAGED1 NAT8L COX7A2L TLE4 ATP6V1C1 DGKG NPTXR ALDH1L1 DPY30 NHP2L1 NAP1L3 KIF1A PSAP PCBP1 CTSD PTPRN GORASP2 PSD3 FAIM2 ATP5I WFS1 KIF21A COX4I1 CHRNA2 GPR98 BCAT1 BEX1 FGF2 PODXL ABHD14A HTR2C C19ORF43 RPL11 BEX4 EZR PPP5D1 SLC39A3 ANGPTL4 APLP2 SNAP25 SLC22A17 RPS4X TMEM59L SNRNP25 RPL38 ITFG1 ROBO2 PARM1 VIM GNB1 ADAM33 MAGED2 PTGES3 CAMKK2 HSP90AB1 SCOC ACTG1 KIF5A RP11-632C17__A.1 DYNLT3 OAT PPIA DNAJC5 GABARAPL2 SYNGR3 FAT1 ARL6IP5 COX6B1 SERPINE2 PRKCB ATP5B FAM134A LHFP PLCB1 CCDC169 SNRPN DNAJB6 NDUFA13 RPL10A APP ATP6V1B2 GUCY1A3 PRDM16 RPS10 RHBDD2 INA PAQR8 TKT TMX4 DCC EID1 GAD1 CLIP3 IGF1 STOX1 HFM1 SRM SPCS2 FBXW11 TRIM37 RPL32 IGFBP5 ZBTB20 YIPF3 NCEH1 GNG12 MAPK1 NDUFA4L2 MTND2P28 SSTR2 NCALD ENOPH1 EIF4G2 RPL13 GDA SLC14A1 GOT1 EPDR1 HSP90AA1 ETS2 GJA1 MAP7D2 LGI3 LDHB RAB3A TSPAN7 NAP1L2 RHEB USP5 BASP1 ZNF804A TSC22D1 CDKN2D GRIN2A KLHL12 ATP6V1G1 CCDC25 PON2 STMN2 MRAS PLS3 NEGR1 TRIB2 CAMK2D GRM3 SPATA13 TOMM70A SMOC1 COL21A1 GNG5 ZFAND5 TPPP CLTA NFE2L1 VAMP2 SPARCL1 NBL1 SPTBN1 NDFIP1 FXYD6 ATP6V0C UCHL1 RGS12 APLP1 SFTPD RP11-20I23.1 FABP5 VPS35 SOCS3 SUMO2 MLLT11 EFR3A DIRAS3 NCAM2 NCDN GSK3A RAB40B TAGLN3 DNAJC21 TBC1D15 RNASEK-C17ORF49 NGRN TLR4 RPL17 RPL17-C18ORF32 MTRNR2L6 ATP5O ATP6V1G2 RPS26 RAB3B PCDHGA6 PCDHGA10 PCDHGA5 HNRNPA1P40\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "VIP-expressing interneuron" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: CXCL14 SYT1 MT-ND4 MT-CO2 RPL31 SNAP25 RPL26 ATP1B1 RTN4 RAB3B DKK3 SST TMSB4X HSP90AA1 CNR1 CALM1 GABRA1 ATP5G2 MT-CO3 ZFAND5 CCK GPM6A PGAM1 CHST11 NGFRAP1 PRKACB MT-CO1 RPL3 CNTN1 NR2F2 THY1 VSTM2A STRAP ZNF385D TF RPL39 UBC CPE NDUFA1 GAD1 CLSTN1 ZBTB18 PLS3 MTRNR2L12 PREPL ISCU APLP2 SNX10 TMEM130 PIK3R1 RPS15 EIF4A2 MT-ND1 ATP5B COX5B ENO2 CD99L2 EGFR NDFIP1 SCN2B MT-ND2 RPL37A STMN4 C19ORF53 CALM2 RPL38 MAPK1 TERF2IP GNG12 COX7A1 ACTB KIF1A UQCR11 KIT GDI1 KLC1 PROX1 ELAVL2 NAP1L3 ARL6IP1 TMSB10 HSP90AB1 NGEF PITPNA NR1I3 LMBRD2 TSPYL1 NDRG4 DNER BASP1 SNCB STXBP1 SHISA6 UBE2QL1 GRIN2A BNIP3 CHL1 PKM LANCL1 GRIK1 IFI6 NCAM2 UQCRC1 SRP9 MPC2 BEX1 PPP3CB PNMA2 CPLX1 CHGB ARL4C RNF212 TAGLN3 HS6ST2 PTPRZ1 SKAP2 NDUFC2 RTN1 ISCA1 MORF4L2 TPD52 CNP SYT11 LIMK1 PNOC PAM COX4I1 RPRM CLTB PPP2R1A COX7B PRDX2 TTN TMTC4 POLR2K TP53I11 RPL35 MAPK8IP2 CCDC85B RP11-20I23.1 SUB1 ASAP2 NARS PELI3 NDUFB5 HSPE1 MAPRE2 SLC25A22 APLP1 LPAR2 COX14 ST8SIA2 PEG10 BCAS2 PRDX1 CAB39 PGM2L1 SPOCK3 TPRG1L ATP2A2 SDHAF1 MT-ATP6 ZNF536 HDLBP GRIN1 KIF21A COMMD6 RPS28 ERBB4 AP2B1 MTATP6P1 CKB ADAM33 CRYM NDUFS5 TMEM35 SLC22A17 TMEM117 NAPB THSD7A PSD3 SEZ6 RHOA CSDE1 PEX5L CAP2 NAP1L2 RPL10A PSAP DDN RLIM GUCY1A3 CCDC115 DCN SERINC1 NEFH PNMAL1 GABARAPL1 PLCB1 MYL6 MLLT11 CXXC4 PLD3 COX7C MT-ND5 PLD5 SEZ6L2 C1ORF233 GNG2 MAPRE3 RANBP1 NDFIP2 RNF11 SEPW1 BMP2 PHYHIP SPARCL1 NMNAT2 RTN3 MRPS21 TSPAN7 ARHGDIG UQCRH MSMO1 SYN1 CEND1 SLC12A5 RHOB TBCA GPX1 FAM84A OXCT1 SLC6A17 NPAS3 PRDX5 HMP19 UBL4A NBL1 FXYD6 COPS7A KLHDC3 SYT13 SCOC MAP1B PEBP1 TUBA1A FRMD4B DPP6 PHYHIPL GDF10 RPL13A GPR26 CAPNS1 LGALS1 PTMA H2AFZ TMEM151A SLC1A2 ATP6V0E2 SYNPR PRKCB CLTC MTRNR2L1 NUDT21 NCKAP5 SLC7A2 AP2S1 COBLL1 COL21A1 ALDOC PFDN4 MAP4 CHP1 ADORA1 RAB3C WBP2 ATP5J ACTR1A GAPDH SCAND1 SNAP91 ADD2 TUBB2B ROBO2 GRIN3A IGF1 PIN1 MTCH1 CST3 CAPZA2 MACROD1 MAP7D1 OAZ1 SCG2 SYT17 TCEAL2 ITM2B DNAJC6 KIF5A RPS5 BEND5 RRAGA ATP2B2 ACAT2 ACOT7 RPS27A PTPRM PNMAL2 RAB2A CADM2 CPLX2 ATP1A3 PSMD2 ENO1 DIRAS1 LPPR4 MT-CYB GOT1 TENM1 AP2M1 UQCRB CYB5R3 EPHB6 TUBB2A EDF1 HEG1 ATP6V0C EPHA6 RCAN2 RAB1A SAMM50 GPATCH4 SCN3B NPTXR TPT1 CDH8 CREG2 DCC ATP6V1F NCEH1 OXR1 ATP6V1G2 AC244489.1 ALDOA IDS NUDT4 ARF5 TUBB3 MTRNR2L6 RPL21 PPIA RPL36A NSF GTF2H2C_2 PCDHGA10 PCDHGA5 PCDHGA6\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "VIP-expressing interneuron" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MT-CO3 MT-CO1 RAB3B SNAP25 GDI1 MT-CO2 ARL8A ARL6IP1 HOMER1 MAP1B LL0XNC01-16G2.1 SYNPR NAP1L3 ATP6V0E2 SKP1 PROX1 SCN1A ATP1A3 GABRA1 TSHZ2 PREPL TPRG1L INPP5F APP PRKAR1B SEZ6 MTRNR2L12 QKI SLC6A1 MAP4 TF ZNF385D CHGB ESCO2 ADARB2 SLC9A6 LMBRD2 BIRC5 SNCB NDRG4 ENC1 QDPR LIMK1 PCMT1 SLC38A1 EIF1AX SMOC1 ACOT7 KCNF1 CACNB1 DNAJC5 PTMA ATP5B CDC37 UBC MTRNR2L1 THSD7A CA11 DKK3 SPOCK3 TBCA CBX6 HSP90AB1 RPL32 PCDH8 NAT8L NR2F2 TSPYL1 DNAJB9 UBL5 SYT13 PCDHA4 RELL2 CKB TP53I11 RPL31 OCIAD1 VWC2L MT-ATP6 ARHGAP35 PTCHD4 TSC22D1 CLSTN1 HMP19 CLU DNER FXYD6 RP11-195F19.5 GABARAPL2 RPL13 ACTR1A EXTL2 CISD1 AP2M1 PSMC3 RTN1 PSAP SARAF SCN3B OR6D1P SLC22A17 LGI2 GHITM DMTN ITM2B VIP PRKCB MAP2K4 NAP1L2 DSTN CALM3 SLIT1 ID1 ANKRD26P3 NMNAT2 KIT VAMP2 NGFRAP1 EDIL3 RTN4 SUMO3 FAIM2 COX6B1 SPOCK2 MTRNR2L8 LRP1B CERS6 OPA1 OLFM1 MT-ND1 FAT3 FIGN PNMA2 SELT PGM2L1 KIF1A NARS ATP1B1 CAP2 ATP6V1E1 APLP1 UBQLN2 CEND1 TM2D3 RPS15 FABP3 TSPAN7 COX7C ROBO2 GAD1 RPL13A TIMP2 MT-ND2 TUBA1B PARM1 SCG2 C19ORF10 SH3RF1 CADM2 SNRPE RPS28 GPX4 SNAP91 NDUFC2 RBX1 SYN2 SYT4 KIFAP3 GRIP2 MORF4L1 HOPX ITFG1 CYFIP2 PEBP1 TAC3 PEX5L SLC22A3 RP11-20I23.1 RPL17 ATP6V0C RPL17-C18ORF32 NGRN IDS MTRNR2L6 RPL7 PCDHGA10 PCDHGA5 PCDHGA6 TBC1D15\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "VIP-expressing interneuron" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MT-CO3 RPL41 ATP1B1 MT-ATP6 MT-CO2 MT-CO1 RPL13A IGFBP5 CCK MTATP6P1 MT-ND2 RPS28 MT-ND3 RGS12 TMSB4X RPL3 FXYD6 RPL26 RPL21 CKB RPL17 RAB3B PRNP RTN4 GAPDH TSPYL1 SYNPR UQCRB RPL7 MTRNR2L12 MT-ND4 MT-ND1 CADM2 RPS12 RPL37A MTRNR2L1 SERINC1 RPL35 EIF4A2 OXR1 PSAP PREPL PTMA RPL32 RPS15 GRIN2A GPM6A HSP90AB1 CALM2 RPS27A OLFM1 FTL SNAP25 VSNL1 TAC3 CYFIP2 TSC22D1 VIP GPX4 TCEA2 STXBP1 ATP6AP2 HMGCS1 RPL23A RPL15 FKBP4 PPP1CB SLC6A1 RPS26 MRPS21 SLC22A17 ALDOC USMG5 RPL38 ENO2 RPL10A ERBB4 CFL1 TUBA1A SCG2 CDH13 OAZ1 RPL13 RPL31 C14ORF2 COX4I1 ATP5J2 ZNF385D RP11-20I23.1 ATP6V0C SEPW1 MYBPHL ATP1A3 ROBO2 LRRC39 DLX1 FSCN1 KLHDC3 GNAQ SEZ6 APLP2 B3GNT1 ACTB GUK1 CHGB VAMP2 SYT1 PRKACB FGF12 TPT1 MAP1B CALM1 CHRNA2 NDFIP1 DNAJB6 TOMM7 NGRN CCDC184 NDUFA1 KIF1A CLTC OPCML TERF2IP CLU VSTM2A GAD2 DRAP1 TUBB2A NCALD DSTN PRDX2 GUCY1B3 RPL11 STK24 MORF4L1 STMN2 RPL8 ITM2B COX7C PRUNE2 RNF11 CBLN1 KIAA1211 RTN3 VSTM2L ATP1B2 PRKAR1B SH3BGRL3 GRIN1 MAF RPS6 PPIA RNF181 ARF3 LDHB SNAP91 SMS ATP2B2 FARSA RPS3A D4S234E CADM3 SPOCK2 TCEB2 KLC1 PNMA2 DPYSL2 COX6B1 PROX1 UQCRH TKT RPS10 WBP2 PFDN1 SKP1 RPL12 CNR1 GABARAP RPL36A MTRNR2L6 ALDOA DNAJC21 UBE2N RPL6 BSCL2 UQCRQ RTN1 EIF4G2 SALL1 CRH SLC17A7 QDPR ATP5O ARHGDIG FAM96B GMFB FAM127A ATP5E PSMB7 C19ORF10 SCD5 ZNF536 CFL2 PRDX3 TOMM20 EIF1 OST4 PCMT1 SRP14 SELT SERINC3 MT-CYB AC244489.1 DOCK10 TMOD2 ABHD14A GBE1 DNAJC5 PEPD GPR158 COX7B EID1 MDH1 EDIL3 WSB2 BTBD11 MZT2B AKR1C2 MAP4 BSN ARL8A NGFRAP1 RABAC1 SOD1 NRIP3 ATP6V1A CPNE2 MRPL11 CDC42SE2 GOT1 NHP2L1 POLR2K MAP2K4 LYPD6 CAP2 CA2 RPL18A MTND1P23 PGK1 BCAP31 CLIP3 NFE2L1 ATP5B ASIC4 SERF2 PPIF NR2F2 LAMTOR2 CNTNAP5 NDUFB7 UQCR10 RAB3C PDE9A COX6A1 REEP5 KCNK2 LINC00116 TSPAN7 MRAP2 LPPR4 ATP1A1 GABRA1 CREG2 AGA CDK5R1 PKM EDF1 PTGDS MAPRE2 UBA1 YWHAZ VDAC1 KCNIP1 DPY19L1 RAB6B HNRNPH2 TMSB10 NOP10 NARS NDUFB4 SDC2 IQSEC1 ATP5J CALM3 MTRNR2L8 ENC1 KLHL5 IDS DNER EPB41L3 PREX2 COMMD6 STMN4 PDP1 MAGEH1 DCLK1 JAKMIP1 NDRG4 MRPL20 DPP6 BEX2 HSPA4 GAD1 SYT11 C6ORF1 SERP2 MAP2K2 LAMTOR5 PRDM8 BRK1 CST3 LMBR1 GUCY1A3 NAPB OLFM2 PRDX1 TMEM59L FBXL16 KRAS TMEM147 ARPC4 CD163L1 YWHAG PPP2R1A ID2 CSDE1 DYNLT3 ARL4C CHL1 RAN NRSN2 HEPH HPCA SLC24A2 SEMA4G DHCR24 SLC7A8 TEFM ADSS MGST3 OR6D1P NSF RAB3A CYCS TOLLIP RAMP2 ATRN NEK7 SLC25A6 SYNGR3 MYEOV2 FSTL5 NINJ1 SYNJ1 PSMA7 PIP4K2A PINK1 BNIP3 SNX10 DYNLL1 FAM3C DYNLL2 ARL6IP1 RRM2B SUSD4 CNRIP1 PLS3 FAIM2 CA11 KCTD12 ATP6V1B2 ITFG1 ALDH5A1 WBSCR17 TGOLN2 RPS2 SUB1 KCNAB2 COPE GRIK1 RPS5 RLIM YWHAH CLEC2L APLP1 TSPYL4 MAPK8IP2 NDUFA11 CBX6 KITLG ATP5G1 ARL6IP5 DNM3 CRIM1 MSMO1 NDUFA5 CAMK2G NUAK1 SERPINF1 APP MRPL51 HSP90AA1 CITED2 OCIAD1 MFSD6 SCN3B FTH1 ATG101 CLDND1 SCN1A DIRAS2 SLC25A5 PJA2 DDAH1 RP11-111M22.2 PLD3 ARL8B PPTC7 VWC2L SYT5 PEBP1 ISG15 NRCAM UQCRFS1 TUBA1B ATP5H ZBTB18 FBXW11 AK5 WASL MAPK1 PSMC5 APOE NDUFB10 C4ORF3 DIRAS3 GNG3 POLD1 FBXO2 CXCL14 PVALB PPP2CA PPP3CA PIK3R1 ATP6V0E2 RP11-413E6.1 UBA52 ATXN10 CABP1 BAG4 RBX1 HMP19 RPS4X RHBDD2 GTF2H2C_2 PSMB3 RNASEK-C17ORF49 ATP6V1G2 TUBB SYTL2\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "VIP-expressing interneuron" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: CNR1 CCK ATP1B1 RELN NDFIP1 SYT1 CXCL14 APP PGRMC1 PPP2R1A MT-CO3 DNER CHL1 CADM2 MT-ND1 NECAB1 DKK3 DPYSL2 PPIA GDI1 PPM1A GABRA1 NAPB FXYD6 GRIN2A SLC22A17 RAP2A ITM2B GPM6A SNAP25 ZNF536 PPP2CB ATP2B2 TERF2IP ATP6V1B2 GABARAPL2 SCD5 AP1S2 SERINC1 CLSTN1 PRNP BIRC5 VSTM2A HSP90AB1 MAP1B PTK2B TUBA1B TMEM59L TSPAN7 TGOLN2 TENM3 CAMK2D CALM1 RP11-219A15.1 PNMA2 HAPLN4 PRUNE2 HGFAC COX8A MARCKS ATP6V1C1 SLC12A5 MT-CYB HTRA1 TPT1 PSAP MAP2K2 MED10 ATP1B2 YWHAZ MAGED2 SRP14 SLC39A10 KIFAP3 NRGN NCDN GUCY1A3 FAM134A OLFM1 RPH3A SLC9A6 LMBR1 ATP6V1F MORF4L1 GSTO1 TMSB4X RABAC1 CLTB CTNND2 PAX6 EPS8 STX1B SOX2 PGK1 KIF21A ATP5G3 BEX1 RTN3 MAP1LC3B PAFAH1B2 DNAJC6 ACTR10 ATP6V1G1 TENM1 RNF11 RAB3IP NELL2 ATP1A1 NPAS3 SLC25A22 ENO2 SOX4 AZIN1 RPL39 PCDHA4 MAPRE2 OPCML MPI COX14 TUBA1A PLS3 MT-ND2 KLHL5 MT-ND3 GAD1 DYNLL2 CDKN2D SEPW1 QKI MT-CO1 MTUS1 CHP1 FUNDC1 ALDOC EIF4A2 ARL8B APLP1 PSMD12 SH3GL2 GFRA2 MAP7D1 FAIM2 ISCA1 SPOCK1 NDRG4 C14ORF132 CREG2 TAGLN3 CHGB TMSB10 EIF1B PREPL TMEM11 SLC38A1 RPS6 PLCB1 SPOCK3 CYCS PPP3R1 GPRC5B NRIP3 VSNL1 TRHDE HMGCS1 MT-CO2 GRIP2 PLCXD3 SCG2 AMIGO2 CLTC MAPRE3 CFH PIN1 CCDC168 GNAQ PPP1CB PRPS1 PCDH8 CTD-2179L22.1 COL12A1 SNCA GABRG1 ATP5B STMN2 SCN1A PINK1 TSPYL4 FGF12 GRINA MAP4 ATP6V1A MT-ATP6 SYNGR3 SLC7A2 TIMP2 ATP1A3 ELAVL2 UQCRC1 OAT CHMP4B GAPDH TCEAL5 UQCRB CHMP5 SCN7A PKM CNTN1 HDAC1 DDR2 SEZ6L TCEA2 FSTL5 C19ORF10 SPTBN1 ARF3 DYNLL1 MZT1 P2RX6P CPLX3 GPX4 PRDX1 GYG1 UBL5 RPS28 SLC7A8 EIF4G2 CDK5R1 ATP9A BCKDK HCN2 HMP19 TSC22D1 RAB3B ZNF385D SYTL2 HNRNPA1P40 FTH1 NGRN RPL36A ALDOA NDUFA13 NUDT21 MIF\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "VIP-expressing interneuron" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MT-CO3 MT-ND4 MT-CO1 MT-CO2 SYT1 PENK ATP1B1 ARL6IP1 MT-ATP6 NAP1L3 SYNPR GPM6A DNER SERINC1 DLX1 VAMP2 CLIP3 TSPAN7 YWHAB VIP MARCKSL1 TIMP2 GAD2 MT-ND1 NAP1L2 WASL EDIL3 INPP5F GAD1 MAPRE3 HMP19 RPH3A ENO2 ATP1A1 RTN1 PLD3 PRNP CADM2 CALM2 MTATP6P1 MORF4L1 MAP1B CAMK2D EIF1 HSP90AB1 MT-ND4L SNAP25 RAB1A VSTM2A PREPL SPOCK1 NCEH1 MT-ND3 CDH13 ANXA7 THSD7A TMSB10 OPCML PCDHA4 MT-CYB ARL8A NPR3 NRCAM KIF21A PEX5L PNMAL1 ATP5E SERF2 FXYD6 NPTN SCD5 ALDH5A1 DMTN PCYT2 CAP2 ACTR10 PLD5 TUBA1B RTN3 MTRNR2L1 LUZP2 GUCY1B3 SCN1A ENC1 TAGLN3 RNF11 OXR1 HNRNPH2 RGS12 CD63 TSC22D1 CPE GHITM RLIM NDUFS5 USP5 HSP90AA1 REPS2 INA STMN1 CSDE1 TSPYL1 PGM2L1 ABI3BP RPL37A CHN1 AP2M1 NEGR1 OPA1 VDAC3 SLC22A17 RAB3B WBP2 CLU RPL35 GAP43 KIFAP3 SERPINE2 CETN2 C11ORF84 GRIN2A APLP2 CAMK2N2 PRDX3 TMEM150C SLC6A17 NUAK1 TMSB4X NARS HPCA RAB3IP ALDOC ASPDH CACNA2D2 GNAQ C16ORF13 MTUS1 LINC00087 PSD3 ENOPH1 CAPZB LANCL1 KLHDC3 D4S234E HK1 PDZRN4 TMOD2 RASGRF1 GABRA1 PROX1 CDH8 STMN3 GLO1 PCBP1 NDUFB7 SULT4A1 ACLY BRICD5 PHF11 PITHD1 SYN2 COL11A1 TMEM59L USMG5 UBE2M NDN CALM3 NPTXR NAP1L5 GDI1 SLC12A5 PFN1 FAM127A UBQLN2 FIGN MTCH1 GAPDH CERS6 FAM219A ATRN ADARB2 SRP14 NCAM2 SERPINI1 CRKL CNTN1 LYSMD2 NDUFA11 YWHAZ PTPRN2 PTPRM IGSF21 CCDC124 PIN1 RAB3C ARHGAP35 BCAT1 TMEM130 CAPZA2 SYT13 MAOB PPP2CB PIP5K1B HAPLN4 MTRNR2L12 DLC1 CRIM1 TUBB2B RABAC1 TERF2IP TGOLN2 SUMO3 RPS15 ATP2B2 MTRNR2L6 MZT1 TOMM70A OCIAD1 KLC1 NDUFA5 SHISA6 PNMA2 PEBP1 ZNF319 CLTC DPYSL2 SLC24A3 SEZ6L SEPW1 RHBDD2 UQCRB MED31 DCLK1 RTN4 ARFGAP2 ADAMTS6 UBE2E3 RNF208 SLC7A1 MAP1LC3A MAPK1 IDS AES SELT AP2B1 RAB7A TMEM132D SOX11 ITM2B RPS28 MAP1A SV2C ID2 MAP2K2 SPOCK2 NCDN SPARC NDRG4 GABRA5 B3GNT1 TPPP FAM163B SRP9 CALM1 ITGB5 TEX40 ATP5A1 PPP2R1A FTH1 SYNGR3 VAPB PRKACB CADM3 PIK3R1 MDH2 PGAM1 CCDC85B OPRM1 SEZ6L2 ATP5B ENO1 OR6D1P PPP1CB NR2F2 APP SCG2 MTHFS GRIN1 GLRA2 PPM1A SPOCK3 PTPRN NGFRAP1 SPRYD3 PNMA1 SYNGR1 S100A6 CHL1 CTNND2 ADAM23 UBE2N TUBB4B SNX3 CKB HTR2C PPP3CB CISD1 CNR1 LYNX1 ARF1 MGST3 APLP1 CPLX2 DCTN1 ZFAND5 SLC9A6 OAZ1 BSN HCN2 ISG15 ITFG1 SPTBN1 NDUFB1 SDCBP HPRT1 NRIP3 PALD1 ATP1A3 DNAJA1 SSBP3 FKBP1A SLC38A1 TSPYL4 PDLIM5 NDUFB2 RPL26 LMBRD2 NFE2L1 SLC7A5 HRH3 ADD2 DNAJC6 MAP2K4 PPP2R2C CAMK2G MAP4 TBCA CLSTN1 LRP1B DNAJC5 ATP6V1G2 TUBB B2M NGRN ARF5 RP11-219A15.1 MIF\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "VIP-expressing interneuron" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MT-ND4 MT-CO3 SYT1 MT-CO2 ATP1B1 MT-CYB MT-CO1 CALM1 EDIL3 MT-ND3 ACTG1 SNAP25 MT-ATP6 ALCAM GNAQ ELAVL2 CADM2 ARL4C PHYHIPL DPP6 TMEM130 TSPYL1 MT-ND2 GABRA1 SYTL2 ANK1 BASP1 AES QKI SPOCK1 SKP1 MAP1LC3A VAMP2 HSP90AB1 GPM6A SYT11 ATP6V0B CALM2 THSD7A NAPB SLC6A1 NDFIP1 GAD1 IDS MAP1B PCDHGA6 CHMP5 ALDOC KLHDC3 PGM2L1 RELN MTRNR2L12 SCAND1 UBE2V2 RPL13A CNTN1 UBL5 GDI1 CHRNA2 MARCKS STMN2 SERF2 RGS12 ACTB FXYD6 COL11A1 PRKAR1B CDK5R1 MAPK1 ZFAND5 NR2F2 TMEM65 ARL6IP1 LCNL1 TMEM59L PROX1 TMEM200C PCBP1 PPP2R1A RTN4 GRIN2A RPL18A ERBB4 NBL1 ATP1A3 CLTC ATP2B2 KCNC2 ACLY SCAMP5 SERINC1 TMEM230 EIF4A2 MTRNR2L1 EIF1AX CBX6 RPS28 RTN1 PRKACB GAPDH DNER HSP90AA1 NDRG2 SARAF GRIN1 LGI3 FAT3 NAP1L5 DCLK1 MTPN KIF21A ZNF385D TBC1D15 FAM219A RBM20 ASAP1 DNM3 AGT ATP5F1 TOMM7 PSMD8 TUSC2 GTF2B NGB SNCB MAGED1 INPP5F RPL32 MYEOV2 TCEAL3 TMOD2 RPL3 DYNLRB1 ACOT7 SLC9A1 NAPA JAKMIP1 MT-ND4L NREP MT-ND5 RPL38 NPTN TMEM35 SIRPA LRP1B VIP PGRMC1 PPTC7 MYL6B TBCB DNAJB6 RAB6B DGUOK NCOA4 ATP5I RPL35 PFN2 TMSB10 APLP2 CDKN2D NDUFB8 PPP3R1 MZT2B TUBA1B COL12A1 HTRA1 DNAJC6 COX7A2 PALD1 ENOPH1 GHITM UQCRH CAPZB ASIC4 SNAP91 TCEAL7 ACTR10 UBC SPOCK2 CD99L2 BIRC3 UBA52 ATP6V1G1 PTMA TMA7 HRH3 CLPTM1 ATP6V1B2 CDK5R2 SNN SYNJ1 NDRG4 ARF3 PPP2CA CMPK1 SCN1A TUBB2B TPRG1L PSMD2 CFH TUBB4B SMIM13 STMN1 VEGFA SALL1 GOT1 PTPRN CSRP1 PTPRN2 OXR1 CAMK2D NGFRAP1 PSMD12 INA COX4I1 ITGA6 MTRNR2L8 TENM3 SRP9 STMND1 PTPRM TCEAL2 SLC38A1 SYT13 SMS RPL7 CREG2 PRDX5 SAMM50 PNMAL1 RBX1 SRD5A1 CDR2L DYNLL1 ITM2C TSPYL4 GUCY1B3 LMBRD2 SYNPR SULT4A1 RPL13 PRNP MRPL11 ANXA7 ITFG1 GNB1 SNCG CAMK2N2 FAIM2 UQCRC1 CKB GPR158 PNMAL2 VSTM2L MARCKSL1 NEFM NUAK1 COX6B1 FGF12 OLFM2 TERF2IP FKBP1A STXBP1 NCALD RPS3A WASF1 BEX4 FAM131B CCDC152 SCG2 FAM134A UQCR10 HSPA8 ARL1 HMP19 TRMT112 FSCN1 VDAC1 TPI1 GLRA2 LZTS1 SRP14 NDFIP2 PPP1CB CNTNAP5 RPS6 NAP1L2 ATP5H MAPK8IP2 NRF1 PNMA1 SLIT1 BRICD5 KIF1A RPL36A STX1A RAN CDH13 VAMP1 NHP2 UBE2F D4S234E CADM3 CX3CL1 HSPA4 ATP5G2 RNF11 C8ORF4 PRKAR1A NDUFA11 CPE RTN3 PCSK1N CERS6 HIGD1A PPP2CB COMMD6 CSDE1 ATP6AP2 SYPL1 ARPP19 STMN3 SLC25A6 COX6A1 RPL6 MGST3 VSTM2A RPL37A OAZ1 NRSN2 OLA1 ROBO2 PPP2R2C HHATL ANAPC11 ITM2B IGF1 GSKIP HS6ST3 RPL15 RAB6A C1ORF233 OLFM1 LANCL1 CTNND2 DNAJA1 NDUFA1 PLCB1 EID1 KLC1 PLD3 CPLX1 RAB4A PJA2 RPL8 ADAM33 RNF208 MYL12B PREPL ARHGAP24 EFR3A ADAMTS1 MAPRE2 C16ORF13 SUSD4 CFL1 KIT ATP9A SNX10 YWHAH PFN1 RP11-20I23.1 TUBB3 RPL17 ATP6V0C OR6D1P ARF5 NSF RPL26L1 RPL17-C18ORF32 ATP6V1G2 RPL21 AC244489.1 PCDHA4 PCDHAC1 PCDHA10 PCDHA9\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "VIP-expressing interneuron" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MT-CO1 MT-CO3 MTRNR2L1 MTRNR2L12 MT-CO2 MT-ND3 CCK MT-CYB MT-ND2 MT-ND4 VIP SYT1 PLP1 MT-ATP6 ADARB2 RPS15 MTRNR2L6 ATP2B2 MTATP6P1 CALM2 SYNPR PTMA ARL4C SCD5 PLCB1 CLSTN1 RPS5 SLC6A1 TOMM20 CNTN1 SCG2 ATP1A1 CADM2 ATP6V1A RPL21 TMEM130 ATP5I PET100 MYEOV2 RPS3A MT-ND1 LAMA3 MARCKS RGS12 UBQLN2 TERF2IP PRNP NR1I3 MPC2 CTGF ITM2C TPI1 NRIP3 CAMKK2 PKM RPL38 TRIM59 GABRA1 PDE3A COX6A1 ARPC5L DNER KIF21A NDUFS5 CA2 EBF4 PCDH8 CADM3 PPP1CB RP11-111M22.2 SOX10 RAB40B THY1 MFN2 ZNF536 TUBB2A SLC39A10 ARL6IP1 SLC12A5 WASF1 STXBP1 HS6ST3 PLD5 UQCRH SOD1 HMP19 DNAJC5 SLIT1 PAK1 ARL6IP5 DPYSL2 GHITM SERPINE2 NPAS3 CAMK2N2 NDUFA1 DBNDD1 EIF1AX BCAS2 SULF2 ITM2B CDH8 SERINC1 RAPGEF5 OXR1 UBA52 VAMP2 MRPL52 HSP90AA1 NDUFA12 DYNLL1 RPL17 EDIL3 QDPR RNF11 HAPLN4 RTN4 UBB CRIM1 NIPA1 TUBA1A APLP1 NPTXR SLC1A3 COL12A1 SCN1A SLC25A6 LPPR4 PGD ELFN1 PFDN1 PARM1 CA11 LRRC39 KLC1 TMEM160 CSRP1 TENM3 FGF12 RPL26L1 CPE ATP6AP1 CNP CNR1 RTN3 MIF SRP14 SYNGR1 SCD ENO2 SLC1A2 LMBRD2 GFRA2 PPP2R2B SKAP2 BTBD11 ATP6V1C1 HIF3A SNAP91 RAD23B RAB11A IGF1 ZBTB20 KLHL5 PROX1 SNAP25 ERBB4 RCAN2 MORF4L1 MTRNR2L8 TMEM120A KCNC3 RAB3C SSBP3 FTH1 SPARCL1 MT-ND4L JUND RPL23A KCNAB2 ELAVL2 SNRPE TLE4 PTCHD4 TPT1 TKT IQSEC1 PPP2R2C OPRM1 GNAQ CLDND1 TRIM37 MRAP2 BIRC5 ATP9A MRAS RAB7A HINT1 RPL10A ALCAM RAB3B SYTL2 ZNF385D PIN1 PCDHGA6 RPL13A GTF2H2C_2 PCDHAC1 PCDHA9 PCDHA10 PCDHA4\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "VIP-expressing interneuron" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MT-CO3 ATP1B1 MTRNR2L1 MT-ND4 MT-ND1 MT-CO1 HSP90AA1 RGS12 MT-ND2 MT-CO2 ATP1A3 HNRNPA1P40 SPOCK2 SSBP3 CALM2 GPR68 VAT1L THSD7A GRIN2A EFR3A THY1 CDH13 CCT5 TSPYL4 TGOLN2 MT-ATP6 APLP1 CLTA CADM2 PRKACB SYNPR FXYD6 RPL13A ARL6IP1 PROX1 CAMK2G SYTL2 RAB3B DNAJC21 OR6D1P CDC37 MTRNR2L6 SCOC CX3CL1 NRCAM HTR2A PGRMC1 NDRG3 BSG RPS3A ACTG1 MT-ND3 RPS4X APLP2 PSMB7 SLC12A5 RP11-111M22.2 MT-CYB C19ORF53 SMIM13 TSPYL1 MAP7D1 HSP90AB1 COX7C HMP19 DKK3 MAOB KIAA1024 PIK3R1 PRKCE VAMP1 OCIAD1 EIF1AX RPL37A TPT1 SUB1 PEG10 FAM43A APP SLC24A2 SLC38A1 PPP2CB RAB7A RASGRF2 CYB5R3 GAPDH PGM2L1 RPL38 ZBTB18 GABRA1 ATP5I EPHA6 DPF3 ELMO1 ERBB4 PRKCB CAMK2D TMSB4X PEA15 TMX4 PPP2CA CDC42SE2 EIF1B RPL39 PSAP NDFIP1 ARL4C SSTR2 NCAM2 CYFIP2 CXXC4 LANCL1 CALM3 MAP1B TPD52 BAALC ZFAND5 GRIN1 ATP6AP1 RPL13 HINT1 SYT1 ITM2B CFL1 GPM6A EDIL3 WARS PTGDS FABP5 CD63 UCHL1 CABP1 HSPE1 NEFM PREPL ARL8B SYT10 NDUFB2 LCNL1 GRIP2 VAMP2 CTSD PPDPF MT-ND5 PPP2R1A FASN S100B ALDH5A1 INPP5F ACTB MAF KIFAP3 SEZ6 HOMER1 DYNLRB1 PPM1A NAP1L3 KLC1 BIRC5 MTRNR2L12 DNAJC6 RPL18A PPIA RNASEK-C17ORF49 RPL26 PSMB3 AC244489.1 IDS BLOC1S1 MBOAT7\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "VIP-expressing interneuron" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: ATP1B1 SYT1 SNAP25 SYTL2 CALM2 TAC1 ZNF385D MT-CO3 SYNPR MT-CO1 RTN3 GRIN1 DNER BASP1 RAB3C NPTN MAPK1 CALM1 PJA2 TMX4 SERPINI1 ATP9A CHN1 YWHAG GPM6A ARF3 PITHD1 AP2M1 ALDOC GUCY1B3 VDAC1 MGST3 RPL39 MT-CO2 ATP2B2 PHYHIPL KIT PREPL ALCAM GNAQ SLC22A17 OXR1 ARL6IP5 GDI1 PCDHA10 PCDHA4 OLFM1 CHMP4B CALM3 RNF11 BCKDHB PNMAL1 COX6C COL21A1 THY1 CRYZ FAIM2 ATP6V0B STX1B SPOCK1 CDS1 FKBP1A KIF21A PLD3 BEX1 RPL36A NDUFB1 RPS6 PTPRS THSD7A DYNC1I1 YWHAH MAPRE3 SLC12A5 TSPAN7 ALDH5A1 TXLNB PDP1 UBB PNMAL2 CHGB PHYHIP NAPA YWHAB PSD3 ARL4C PPP2R2B PRNP NPAS3 VAMP2 ATP1A1 MT-ND5 MTPN PAK1 PRKAR1B BCL6 NECAB1 SERINC3 CPE DCTN1 DYNLL1 GAD2 CLU NDFIP1 HSPBP1 MAGED2 VAT1L MT-CYB MAP7D1 GAPDH ATP1A3 RPS27A HSPA4 ENO1 TERF2IP HSPB3 SYT5 OXCT1 ISCA1 PARM1 EIF4A2 UBA52 RANBP1 NUDT21 LGI2 TGOLN2 TMEM59L ARHGAP35 C12ORF57 SCOC IGF1 INA NAP1L3 KCNAB2 MAP1B STMN3 PEG10 HPRT1 RTN4 RAB11A TMEM130 RPS4X GABRA1 TMEM132C DYNLL2 RAB3IP PSAP PKM GRIK1 CKB MTCH1 BEND4 STXBP1 RAB4A CRKL QKI LBH CBX6 TSPYL1 PPA1 KCNF1 MT3 HS6ST3 QDPR PRDX3 EIF4G2 CHRNA2 IDH3A ADARB2 FAM127A UQCRB DLX1 PVRL1 SEZ6L CLSTN1 FBXW11 NRCAM SV2B TUBB4A FAM84A GNG3 GAP43 RAB3A TKT TUBA1B JUND PROX1 RPS5 ASIC4 MT-ND4 CDK17 EGFL7 TCEAL3 SPCS2 ARL6IP1 CCDC25 PPIA CTSD LMO3 VSTM2A PDE1C NR2F2 NUDT4 RP11-111M22.2 WBP2 ELMO1 VSNL1 MARCKSL1 GSTP1 ARF1 BCAT1 PGRMC1 CLTC HMP19 GABARAP FTH1 ALDOA SERF2 IDS CYB5R3 DNAJC21\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "VIP-expressing interneuron" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MT-CO3 RAB3B MT-ND3 MT-CO2 MTRNR2L1 RGS12 MT-CO1 SEZ6 ARL6IP1 CADM2 RP11-111M22.2 APP ATP2A2 TSPAN7 EIF1B MT-ATP6 RTN3 OCIAD1 PRKCE TMEM130 FXYD6 SLC6A1 PROX1 MT-CYB SYNPR MARCKSL1 RAB3C MTRNR2L6 ERH PPP2R1A OXR1 VSNL1 TSPYL1 CA9 NCALD EPB41L3 PNMA1 BCL6 PCDH8 PEX5L RPL37A LIMK1 OLFM2 DCLK1 GDA MT-ND1 MAP1B CALM2 HSP90AA1 MTATP6P1 CYFIP2 MT-ND4 RP11-219A15.1 THSD7A COA3 ATP5A1 FGF2 SOX2 PJA2 CDS1 RTN4 EDIL3 PLCB1 PKM YWHAG ATP1B1 LCNL1 CDH13 TOMM70A SERINC1 KIF1A UCHL1 TERF2IP TIMP2 CTNNB1 OPCML AKAP12 CALM1 ALDOC VWA5A GHITM ZFAND5 GRIN2A SYT11 CISD1 RNF152 ATP2B2 DPP6 GSTP1 PAM NFIA RPS2 CLTC FTL QKI REEP2 RPL35 SCN1A ZBTB18 ALDH5A1 ARL4C GRB14 ZBTB20 PCDHGA5 POLR2J COA4 RFC4 KCNAB1 PSD3 RBX1 SEMA4G PPP2R4 BEX2 C12ORF49 HAPLN4 NPAS3 MT-ND2 UBA1 PCDHA9 RPL31 TCN2 DLX1 FAT3 MYO16 MAF SYT1 ATP5H SEZ6L NGFRAP1 DRAP1 UBA52 NAPB LRP4 YWHAH PNMA2 DYNLT3 STMN1 PPP2CB MTRNR2L12 PREPL ATP6V1A RTN1 PRKACB ANXA7 HMP19 PTPRN FIGN ENC1 CYCS PDZD11 APLP2 CREG2 NDUFB11 HIGD1A BTBD10 ERBB4 PGM2L1 ATP5O TCEAL2 YWHAB LANCL1 EIF4A2 FKBP8 SLC1A2 KLC1 ITM2B EID1 CD59 DNER RPS6 SSBP3 HS6ST3 SCN7A PDE1C GAD1 MAPK1 DIRAS3 AES OPRM1 TCEB2 IDS ALDOA BIRC5 CFH ZNF385D SYTL2 TBC1D15 DNAJC21\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "VIP-expressing interneuron" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: RELN SYT1 ZNF385D MT-CO1 SNAP25 MT-CO3 MT-CO2 CXCL14 RTN1 ATP6V1B2 SPOCK1 CCK GDI1 ARL4C ATP1B1 CNR1 RPL21 MT-ND1 COX4I1 GAD1 FXYD6 SLC9A6 ARL6IP1 DNER RPL38 SLC6A1 CAMK2D PNMA2 PPP3CA FAIM2 NDRG4 DNAJC21 TMEM200C PTGES3 TSC22D1 PTPRZ1 VPS35 SLC7A8 ATP6V1A PLCB1 NSDHL REPS2 WBSCR17 HCN1 NPTXR ELAVL2 CPLX2 PPA1 RTN4 HMP19 PTPRN UBE2QL1 BEX1 AK5 LPPR4 ARL8A EIF4A2 PREPL CRH TP53I11 PLS3 SPOCK2 ARFGAP2 MTND1P23 DKK3 PRIM1 MRFAP1 TKT CALM2 FAM3C SYNGR1 CDK5R1 WASF1 CERS6 WIF1 EGFR CREB5 HAPLN4 PDE1A ISCA1 EID1 ETS2 EYA1 YWHAB PARM1 DUSP1 ERBB4 SLC1A2 CTDSP1 RABAC1 MT-CYB NDUFB8 ATP6V1G1 POMP CALM3 KCNC2 TOMM20 NAP1L5 CNTN1 NMUR1 ACTB REEP2 BCL6 SUB1 RAB3IP SOX2 SLITRK1 AZIN1 NFIA MTRNR2L12 BAI2 SLC38A1 PRDX1 ATP6AP2 RPS26 TRIB2 GPR158 SARAF SEPW1 HNRNPH2 CYB5R3 HCN2 SPRN SPRYD3 C1ORF115 PHKG1 ARL8B STXBP1 PGM2L1 CYCS SYT5 SCOC CADM3 IDS PRNP CDC37 GRIN2A SKP1 TRPT1 USMG5 EXTL2 GPM6A COX7A1 BTBD10 KRAS UBB C14ORF2 BEX2 TSPYL1 ARF1 MTCH1 NCAM2 OAT PKM PHYHIP DDR2 SYT17 GPR133 VDAC3 ARF3 FSCN1 THY1 COX7C SYT4 ENPP2 MORF4L2 PFN2 TLN2 KIF1A NR1I3 RHOB DMKN DNAJC5 GJA1 HSP90AB1 EPHA6 EFHD2 SLC22A17 APLP1 RPS27A GABARAPL1 COX14 CALM1 CTNNB1 RPL11 LSM4 DLL3 MTRNR2L8 PTPRS ATP2A2 UBA52 DPYSL2 TCEB2 NAA38 UBL5 CDKN2D GRIN1 GDE1 SCG2 APP SYT13 CTBP1 CYFIP2 MAP1A NPAS3 SLC25A22 PNMAL1 TMEM35 ADARB2 B3GNT1 EIF1B RPL41 UBE2M PAFAH1B2 RPL31 CAMK2N2 IQCK EPHB6 ROBO2 TBR1 ATP2B2 CFL1 SYT11 MT-ND2 AP1S2 SEMA4G RPL26 PCBP1 CDH13 IGSF21 CBX6 GUCY1A3 GPX4 JUN PCDHA4 EIF1 MAP2K4 RAB2A RCAN2 SNRPN CABP1 CHCHD2 CDS1 WSB2 MAP4 C2ORF74 ARPP19 ATP2B4 MT-ND3 RPL32 MED10 CPE MRPS21 SRD5A1 RTN4R DNAJC6 CDK5R2 CLIP3 NECAB1 TUBA1B EGFL7 CHN1 GABRA1 REEP5 MAP7D1 NRCAM IFI6 C11ORF31 EFR3A TMEM59L TMEM151A SERPINI1 ATP5G2 DPP6 ITFG1 GOT1 KCNA2 CHL1 NAP1L3 ALK PTPRN2 VDAC2 NXPH1 CACNB1 PLCXD3 PPM1A HGFAC PRPS1 CFH ATP6V0C RP11-20I23.1 FTH1 NGRN RPL18A\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "VIP-expressing interneuron" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MT-CO2 MT-CO1 MT-ND1 MT-CO3 RAB3B MT-ND2 MT-ATP6 MT-ND5 CALM1 MT-ND4 MT-CYB ARL4C MTRNR2L12 TSC22D1 VIP RPL37A MT-ND3 TMSB4X MTRNR2L1 HMP19 DPYSL2 PAFAH1B2 NDRG4 HSP90AA1 ERBB4 MTATP6P1 PKM BEX1 PNMA2 ARL8A UQCRB RPS5 GNB1 RTN4 FTH1 RPL31 CAMK4 RPL35 GNG2 MTRNR2L8 KLC1 DCLK1 DNAJC6 WBSCR17 YIPF3 ATP1A1 EIF1B CLSTN1 SELT UCHL1 PREPL ATP5J2 NELL2 SYT1 SEPW1 RPL13 MAP1B CCK PTPRN FTL SYT17 STMN3 KIF3C GAD1 PRNP SERP2 PROX1 C20ORF24 PCP4 VWA5A TSPYL1 FBXL21 RPL38 HS6ST3 SYNGR3 SERINC1 EFR3A TGOLN2 CALM3 SSTR2 KCTD12 FGF12 PCDH8 GABRA1 VDAC3 KLHDC3 PPP1CB RAB3IP CADM2 RAB6A PAK1 MARCKS ADD2 ATP5O PRKACB RNF11 PLCB1 PJA2 UQCRQ RAB31 TCEAL7 LL0XNC01-16G2.1 EIF1 SYT11 MRFAP1 HPRT1 SULF2 GNAQ RPL41 PNMAL1 SERINC3 MTND1P23 TMX4 DYNLRB1 NGRN CNR1 COX7A1 ATP6V1B2 SH3BGRL2 SCG2 ACTG1 SLC25A6 CEND1 WBP11 ADARB2 NAP1L5 SOD1 NDUFB8 PSAP DLX1 PARM1 THY1 SPOCK1 ATP6V1A CSDE1 KIF1A PHYHIP SOX2 UBA52 CBX6 CTBP1 RHEB SMS FBXL16 SCAMP5 UHMK1 INPP5F WDR47 TCEAL2 BLOC1S1 UBE2N YWHAB RPL15 KLHL5 BEX2 RPL13A CPE CDK5R1 SHC4 PEA15 RPL10A PRKAR1A CCDC85B TSPAN7 NRCAM PLD5 HK1 MRAS SEZ6L SYNPR CREG2 ELAVL4 SCN2B DNAJA1 CHRNA2 ZNF804A OAT NPTXR EIF1AX C1D MTRNR2L6 GABARAP RPL18A AC244489.1 PCDHGA10 PCDHGA6 PCDHGA5 SYTL2\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "VIP-expressing interneuron" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MT-CO1 CCK SNAP25 CALM1 MAP1B MT-CO2 CALM2 COX7C CXCL14 RPL41 MT-CO3 SYTL2 ALCAM ACTB NDUFS5 CNR1 PPIA ATP1B1 TMSB10 RPL23A RPL15 GRIN2A FXYD6 MT-ND2 RPL13A TPT1 ATP1A3 RPS26 TUBA1B RGS12 ATP6AP2 CADM2 BEX2 RPL31 HSP90AB1 RPS27A RPL38 CPE MT-ATP6 MT-CYB TOMM7 RPS28 RPL3 ALDOC RPL13 CRH VAMP2 RPL17-C18ORF32 SNCG DPP6 PRKAR1A APBB1 RAB3B SLC38A1 ATP6V1F RPS4X JUND ATOX1 PRKCE TXN PPP2CB PTPRN2 FIGN IQSEC1 NMNAT2 ARF3 PGAM1 YWHAB EIF4G2 SEZ6L2 EPB41L3 GPM6A USMG5 STXBP1 DCLK1 GAPDH SPARCL1 KIF5A ITM2B SLC24A2 RPS15 GDI1 DNM3 SYT1 RP11-111M22.2 SKP1 RHBDD2 VIP EIF1B ELAVL4 SPOCK3 RPL26 RELL1 MT-ND1 TMSB4X NBL1 CNTNAP5 ATP6V0E2 EDIL3 PPP3CB ATP5I FTH1 PGK1 ATP5E NDUFV1 PRNP MTATP6P1 TSPAN7 PKM ATP5A1 DNER COX5A MGST3 CTSD TMA7 SELM MAPRE3 ARL4C CD63 PCMT1 COX4I1 ISCU POMP CTC-575D19.1 LIN7B RTN3 NDUFB11 CLSTN2 CCDC141 ZNF385D NR1I3 KLC1 PEX5L FBXL15 OSGEPL1 NDUFC1 MAF KIAA1211 RPL6 PTPRN RAB6B PDP1 PPP2R4 KIF7 HPCA SCN1A UQCRH TUBB2A PPP2R2C HSPA8 YWHAH SYNPR ATP6V0B TOMM70A C9ORF16 ATP5H ELAVL2 COX6C NPAS3 ARL6IP1 PSMA7 PSAP AURKAIP1 UBC TMEM200C GAD2 H2AFZ MZT2B CA11 NRCAM THYN1 PNMA2 ACP1 PCBP1 KIF1A AGT ROBO2 ACAT2 NDUFB8 MAP1LC3A IGF1 SHISA6 NSF MTND1P23 PPP2R1A PRKACB FAM43A NAP1L5 IDI1 RAB6A STMN2 WBSCR17 SNCA SLC12A5 FAM174A MORF4L2 ATP6V0C NDUFA5 KIF3C FSCN1 MANBAL TMEM35 CALM3 PSD3 CNRIP1 CRYAB NCEH1 NRAS UBE2QL1 FIBP RAB3IP CKB HMGCS1 COPRS YWHAZ ARL8A PNMAL1 SHISA8 DNAJC4 MTRNR2L12 COX6A1 CYCS CREG2 OXR1 GPNMB NDUFA4 LGI3 AP1S2 CTNNB1 ATRN MDH1 LAMTOR1 FXYD7 PRUNE2 DPF3 THSD7A MYL6B APP TUBA1A OCIAD1 PTMA TUBB4A CYFIP2 BAG4 PRKAR1B OPCML CAPZA2 SP8 ARHGAP35 CPLX2 PRPS1 SERINC1 COX5B DYNLRB1 GAD1 RPL8 ENC1 GSG1L FABP3 ARL4D THY1 C19ORF43 TMEM258 RTN4 POLR3H BEX1 SLC25A4 RTN1 PRDM16 PREPL NDUFAF3 GRIN1 RPS12 EGFR CHL1 SEPW1 CLTC FBXL16 MAP1LC3B CLSTN1 ATP1A1 TEX2 ZNF536 RCAN2 WASF1 VDAC1 CAP2 ATP6V1A VPS35 LHFPL3 ARL6IP5 EBF4 GUK1 TMEM14A PRDX2 ERBB4 NCAM2 SCN1B FABP5 CCDC184 ATP9A GCHFR SYT13 RNF11 MRPL51 C19ORF10 SEPT4 SQLE PGRMC1 LMO2 GNG2 KIT NPTN YAF2 RRAD GTF3A FSTL5 BIRC3 LMO3 LINC00116 MYO16 NGEF ATP5G1 SH3BGRL2 DNAJC6 CLIP3 RP11-20I23.1 ENO2 MT-ND3 CPLX1 TMX4 RPL12 ACTR10 CHRNA2 CDH13 ATP5B ASPM NPR3 INA CERS6 COX7A2 PEBP1 SYNJ1 ATP5G2 ELOVL7 YJEFN3 SERP2 RASGRF1 PRDX1 BHLHE40 SLC9A1 CEND1 BEX5 RSL24D1 TKT DYNLL1 SLC9A9 TPI1 PPM1A PNKD PPP3CA C7ORF50 ATP6V1B2 NDRG4 AES IPCEF1 RAB5C OLFM1 CLDN10 RPS6 NDUFS6 CFL1 ISCA1 BEX4 LPPR4 LRRC39 DIRAS1 SNX3 B3GALT2 MYL12B MAGEL2 ATP2A2 C11ORF31 NELL2 MT-ND4 CAPZB SLC22A17 SNX10 STMN1 PPP2R2B RPL7 SRP14 NAT8L ATP5O PIK3R1 SLC17A7 RPL35 TM2D3 MRFAP1 ARPP19 FAIM2 RPL11 RHOA GMFB CCDC168 PPDPF PLD3 UBA1 DPYSL2 NPTXR RPL21 INSIG1 ACTG1 DNAJB6 EIF4A2 SERF2 PTGES3 ZBTB18 REEP2 COPS8 PSMB3 MTRNR2L6 NGRN RPL36A ALDOA RPL18A ATP6V1G2 TUBB PCDHA4 PCDHA10 PCDHA9 PCDHAC1\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "VIP-expressing interneuron" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MT-CO1 ATP1B1 SYT1 SNAP25 CXCL14 THSD7A HSP90AA1 PNMA2 RPL31 MT-CYB ITM2B CALM2 RTN4 PPP2CB SLC6A1 PPP3CB PRKACB MT-CO3 RTN1 PPP3CA SCG2 HRH3 MT-ND4 ATP2A2 RPL6 RAB6B GABARAPL2 RGS12 RPS4X MT-ND1 RPL36A TSPAN7 UQCRH FGF12 PGAM1 RPS27A PRDX2 FXYD6 RAB3B SYTL2 UBA1 ARF1 PTGDS RNF11 RAN PLD3 ROBO2 SLC12A5 ATP5B LDHB NELL1 OXR1 CNTN1 PREPL COX6A1 COX8A ENO2 EFR3A SYNPR KCNA2 DPYSL2 VDAC2 CADM2 NEFH RPL37A CLU ATP1A3 RPL15 MT-ND3 SNRPN TCEB2 TM2D3 TENM3 IGSF21 RHBDD2 SSTR2 RPL41 TSPYL1 RPL38 CYB5R3 ATP5G2 ARL4C SERINC1 SPOCK2 TMEM160 CALM3 YWHAH PEBP1 CCK RPL11 NCEH1 RPL23A RTN3 ZNF385D EDIL3 BTBD10 C12ORF57 ALDOC NR2F2 COX7A2 RPL32 NDUFS5 UQCRB ATP6V0D1 MRPS21 HMGCS1 COPE TOMM20 DCTN3 RPS3A INPP5F VDAC3 NDUFB11 SLC6A17 GPR158 HSPBP1 SLC9A6 SPRYD3 CD63 SCAMP5 NFIA GOT2 GLO1 COX6C FBXO2 YWHAG GNG12 GAPDH CALM1 DCTN1 LYNX1 VAMP2 ATP6V0C STMN1 BSCL2 NRF1 RPL12 PFN2 NEK7 RPL17 SLC39A10 ATP5I PLS3 SEZ6L2 ERBB4 PPP2R1A MAP1A ARF5 HMP19 ATP5C1 RPH3A NCKAP5 TAGLN3 PDP1 UQCRC2 RFK C19ORF53 MTRNR2L1 PRNP ATP5J2 TEX2 VSTM2A DSTN RP11-111M22.2 HBQ1 RPL39 LCNL1 SFRP4 PIN1 CAPZA2 TBCB LYSMD2 NDUFB5 PTN ISCA1 COX6B1 EIF1 MORF4L1 RAB3A PRIM1 MT-CO2 TGOLN2 SCD5 UCHL1 EEF1A2 FAIM2 CLIP3 PSAP APLP1 SNAP91 HPRT1 SDCBP ITM2C IDS STXBP1 WARS SSBP3 BASP1 NOS2 OPA1 NPY RPL26 HSPA8 CD99L2 NDUFB1 NFE2L1 MAP2K1 REEP5 KCNAB2 EPS15 AP1S2 AES KIFAP3 SH3GL2 TUBB4A SEZ6 CORO2B CISD1 GLUL MLLT11 HSP90AB1 DKK3 NTNG1 CNP CITED2 SPARCL1 TSC22D1 HEPACAM TAC3 SFRP1 NDUFAB1 GNAQ CKB STX1A OLFM1 PPP1R7 PGM2L1 TMEM132D PNMAL1 APOD CFL2 TCEAL3 EIF1AX ETS1 TPI1 PJA2 RPL13A CAB39 ELAVL2 DYNLRB1 PAQR9 ZBTB18 ADSS SEPW1 APP ATP6V1C1 DYNLL1 RAB1A CEND1 C19ORF43 MT-ND2 CTSD ADAM23 NDUFA12 GRINA EIF4A2 KLC1 ATP5J CLPTM1 UBE2D2 SCAND1 SYNGR1 THY1 MAP1B NAP1L2 COX7C NGEF RPL8 SUMO2 NAP1L5 NRCAM ARF3 NRAS MTUS1 TMEM155 NDUFC2 HSPE1 ARL6IP5 TERF2IP ABHD14A CLSTN1 NME1 HDDC2 GPM6A YJEFN3 ATP5A1 BAD CLDND1 MAP2K4 SLC7A1 TMEM120A HEPN1 SYT10 PCDH8 DNAJB9 NDUFB8 ACTR1A STX1B CREG2 RP11-20I23.1 POLR3H CMAS ARL6IP1 SCN3B UBE2N SOD1 MARCKS AC244489.1 RNASEK-C17ORF49 CFH MTRNR2L6 B2M ALDOA GHITM RP11-219A15.1 PET100 RPL18A RPL21\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "VIP-expressing interneuron" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MT-CO1 SYT1 MT-ND3 MT-ND2 MT-ND4 MT-ATP6 MT-CO3 MT-ND1 MT-CYB MT-CO2 SNAP25 RELN NAP1L3 CALM1 MT-ND5 ATP1B1 RAB3C MTRNR2L12 MT-ND4L CHL1 CNTN1 MTATP6P1 ATP2B4 EIF4A2 ATP1A3 RTN1 DNAJC21 SYTL2 SERINC3 ACTB EYA4 SPOCK3 KIT RTN4 PGM2L1 GRIN2A PTPRZ1 ATP2A2 FAM174A UBQLN2 HSPE1 DPYSL2 GPM6A BEX2 PPP3CA PSD3 PPIA GDI1 PHYHIPL MAOB SYNPR PREPL SARAF PTMA MAP1B GAD2 SERINC1 TMEM14A NRIP3 CERS6 ATP1A1 SOX9 ADAMTS5 PMEPA1 LPPR4 YWHAB GABARAPL2 MAPK1 RAB1A ELMO1 PTPRM MTRNR2L8 RPL37A GDA REPS2 RTN3 DKK3 WBP2 TIMP2 VSTM2A DNAJB6 SCN1A RP11-111M22.2 CAB39 FAM3C NDUFS5 TENM1 RAB11A ARF3 DNAJA1 MAP4 RPS28 PRKACB ATP6V1B2 NDRG4 PLCB1 TPT1 TMEM130 ATP6V1E1 EPHA6 CPNE8 RPL3 SP8 SLC6A1 GRIK1 GJD2 ANXA7 MFSD6 PKM VAMP2 ATRN PPP2CA LMO4 OXR1 FXYD6 LANCL1 NDUFB2 SPOCK1 DPP6 APLP2 NPTN QKI TSPAN7 SKP1 ATP13A4 CPE PTPRT STMN4 CHMP4B TUBB2A GNAQ ARPP19 GABRA1 MPPED1 MBOAT7 UHMK1 SCD5 RANBP1 ACTR10 NAPB PVRL1 CDKN2D PNP PNMAL1 DNAJB9 EIF1AX RNF11 SCML2 OR6D1P PRNP CMAHP SCG2 TMSB10 HCN1 CTNNB1 PPP2R1A PNKD ATP2B2 PNMA2 AC244489.1 PPP3CB GHITM TUBA1B MPC2 RASGRF1 SNAP91 GUCY1A3 CLEC2L ZNF536 COPRS FGF12 HSP90AB1 EDIL3 LMBRD2 ACTG1 NUAK1 RRAGA SLC9A6 DDR2 SULT4A1 BEX1 MTRNR2L1 SPHKAP DNER ARL6IP1 ERBB4 CLTC ELAVL2 NXPH2 NACC2 APP CDS1 FSTL5 PITHD1 TMOD2 NMNAT2 CYFIP2 BSCL2 NSF PCDHA9 PCDHAC1 PCDHA10 PCDHA4\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "VIP-expressing interneuron" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: SNAP25 RP11-111M22.2 RTN3 SEZ6L SLC9A6 SLC6A1 CAMK2G VIP PREPL MT-CO2 DLX1 MAP1A ATP1B1 HMP19 SYT1 LRRC39 RPL37A KCNAB1 RPL3 IGFBP5 RPL17-C18ORF32 PRKAR1A PID1 NDFIP1 ATP2B2 ASIC4 HDAC1 RBX1 SULT4A1 RPL13 ARL8B LINC00116 SCN1A C19ORF43 RPL23A ACTG1 ANXA7 KIT PTPRS EIF4A2 MT2A SRP54-AS1 PCDHA4 YIPF3 COQ10B RAB6B SRP9 GAD1 GPX1 NAT8L LCNL1 MAPRE2 GRIK1 OR6D1P RHOB MAPK1 RGS4 NAPB NDRG4 ATP1B2 THSD7A COX7C WASL RAB3A STMN2 SMYD2 DCTN1 CHCHD2 ADAMTS6 PLD5 VAMP2 APLP1 MAP1B MTRNR2L1 TBC1D15 STXBP1 CHMP4B CADM2 CPE REPS2 SCAMP5 SYNPR CALM2 RNF11 GRIN1 TSHZ2 YWHAH CAPZB FAM3C CCK AES SYN2 DYNLL2 MT-ND4 TMEM35 APBB1 GMFB RPL32 LMO4 CD24 MAP2K4 SEZ6 KLHL5 GUCY1A3 ARL6IP1 ITM2B TCEB2 DCLK1 WBSCR17 LANCL1 CDC42SE2 GDI1 RABAC1 PROX1 PITHD1 PTPRZ1 TSPYL1 RPL41 SKP1 IDS FKBP1A MTRNR2L6 ATP1A3 ATP6V1G2 RAB3B ESCO2 SYTL2 ARFGAP2 ZNF385D\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "VIP-expressing interneuron" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: CXCL14 DNER MT-ND4 CALM1 PRNP MT-CO2 CNR1 CPE GPM6A MT-CO3 VDAC1 CHL1 SPOCK1 PREPL CADPS2 ATP1B1 PNMA2 SYT4 SNAP25 PEBP1 CALM2 GABRA1 ARL2BP PACSIN1 PPIA ENO2 GHITM NR2F2 PFN2 ELAVL4 PPP2CB SYT1 OXR1 COX4I1 SYNPR MORF4L1 ZNF385D YWHAG MT-CO1 VAMP2 VSTM2A CLIP3 SARAF PJA2 MAGED1 NIPA1 ARL6IP1 NDRG4 CADM2 IDS PGK1 NR1I3 EIF4A2 ATXN10 PFN1 STMN1 ARL8A CHMP4B ATP1A1 ARPC5L SIRPA SLC12A5 FAM43B LDB2 TERF2IP STMN3 ARL4C PLD5 TCEB1 GNG2 PPP2R1A RAB3A ENOPH1 BAI2 GPX4 FNDC4 WNT5A TOLLIP HSD17B14 DCC PDLIM5 RPH3A SCD5 MRPL11 PHYHIP MAPRE3 MAPK1 CRIP2 MLLT11 ABHD14A NBL1 SCOC TSPAN7 DNAJC6 CTGF TPI1 YWHAB PEA15 MYO1B VSNL1 PEX5L SYNGR1 C1ORF52 ANK1 RAN SLC1A2 PRDX3 GRIN1 REEP5 ELFN1 MAP4 FAM107B ELAVL2 INA NUAK1 GAPDH BEX2 LYPD6 DRAP1 SMOC1 CERS6 DSTN NPAS3 HMP19 NPTXR GAD1 CHRNA2 NAA38 ISCA1 CDK5R1 GRINA SCN7A CAMK2D UBA52 STXBP6 CAMK2N2 FRMD4B SELT HIGD1A ATP6AP2 TSPYL1 ASAP1 SYNJ1 SCG2 MGST3 ADARB2 CNTN1 NGFRAP1 HPCA C14ORF132 TSPYL4 MT-ND3 CCK SLC9A6 FXYD6 ANXA7 HSP90AB1 CD63 LPPR4 NAP1L3 RHOB YWHAZ AP2M1 SLC30A3 NUDT21 SSBP3 IDH3A NDFIP1 UQCR10 RNF11 RFK TUBA1B SPOCK3 SPCS2 DYNLL1 IGFBP5 CAP2 PCMT1 ATP6V1B2 TUBB2A SLC25A5 GNAQ AES DYNLL2 SULT4A1 SLC17A8 EIF1AX BCL6 CMPK1 KCNA2 TMSB4X KLC1 PLD3 NMNAT2 NGEF NAP1L2 RPL35 MAP1B MRPL12 ASIC4 RTN3 NCAM2 IQSEC1 TMEM59L FBXO2 PCBP1 SEC61G NECAB1 PLCB1 HTRA1 RPL36A BSCL2 CFH MTRNR2L6 NSF NDUFA13 NGRN RP11-219A15.1 HNRNPA1P40 TUBB\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "VIP-expressing interneuron" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MT-ND4 MTRNR2L1 MT-CO2 MTRNR2L12 MT-CYB MT-CO3 MT-CO1 MT-ND2 MT-ND1 MT-ND3 ATP1B1 MTRNR2L8 SYT1 CXCL14 CHL1 CREB5 PEX5L ZNF385D PPP2CA GDI1 FKBP1A CAMK4 YWHAZ SNAP25 PGM2L1 CPE NRIP3 CDH5 MAP1B ARL6IP1 APP KIF5A DYNLL2 NCAM2 MTRNR2L6 MTND1P23 HSP90AB1 CCK VSTM2L TTN IGFBP5 TBCA QKI STMN1 PREX2 PSAP TMSB4X NHP2L1 TKT DCLK1 LDHB RHOA CLU LMBRD2 ARL4C NECAB1 ACTG1 MEGF11 VDAC2 SPOCK2 GNG12 LAMTOR1 GDE1 HN1 PRKACB ROBO2 SULF2 PVRL2 SCG2 NAPB SLC7A2 EIF1B SMS PPTC7 HK1 TMEM158 SERINC1 RP11-111M22.2 RPL32 HCN1 SCN2B MAF PDE1C CDK5R1 GPM6A LDB2 B3GNT1 TERF2IP FSTL5 HMGCR NAP1L3 CALM2 SNX3 FABP5 ADARB2 SLC12A5 MSMO1 WLS TSPYL4 MTUS1 PEBP1 NDFIP2 RPS6 NDUFB2 MT1X GADD45GIP1 MT-ND4L HOPX DPYSL2 DOCK10 EBAG9P1 SCN1A RPL38 NHP2 BEX1 EIF1 SSBP3 COX7A2L MYO1B ELAVL2 PHYHIPL MORF4L1 MT-ATP6 LRRIQ1 COL21A1 TMX4 PGRMC1 KIF1A CHGB PPP2R1A NDNF ACTR10 GAD2 NEGR1 MAP4 ARHGAP42 GNG2 RPL15 SUB1 CTSD GABRA1 RPL31 GPR98 ATPAF1 SARAF RAB11A PNMA2 ATP5C1 RAB2A CPLX2 B2M RPL41 SERF2 MIF GTF2H2C_2 RP11-219A15.1\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "VIP-expressing interneuron" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MT-ND4 MT-CO1 MT-CO3 SYT1 MTRNR2L1 MTRNR2L12 MT-ND1 HSP90AA1 MT-ATP6 MT-CYB MT-CO2 SNAP25 FAIM2 CCK RELN VAMP2 CXCL14 SCG2 RTN3 MT-ND3 PREPL MTRNR2L8 RGS12 ATP1B1 MTATP6P1 MT-ND4L MTRNR2L6 MT-ND5 SEZ6L2 PTN RPL38 C1S RTN4 MRFAP1 DDR2 UBA52 SLC6A1 EIF4A2 CERS6 SPTBN1 DIRAS1 PNMA2 B3GNT1 PITPNA NDFIP1 BEX1 PDZRN4 ROBO2 RPS28 MZT2B DCLK1 NUAK1 NAP1L2 RAB3C RAB3A RPL13A FAM3C MT-ND2 YAF2 IDS ARFGAP2 COL6A1 SLC22A17 RPL6 TMEM59L UBE2N PLCB1 GFRA2 SNRPE CNTN1 ADARB2 DNAJC6 PTMA ENO1 RHOB VPS35 PPM1A RAB7A FTH1 ATP6V1A NARS UCHL1 PTPRN2 RPL39 LANCL1 CYFIP2 ATP6V0E2 GABRA1 PNMAL2 UQCRC1 MAGEH1 TSPAN7 NCEH1 MAP2K2 BRICD5 BEX4 PJA2 EFR3A SLIT3 CLIP3 SYT3 UBB CAPZA2 LDHB ISCA1 APP NDUFB8 SRP14 SNX10 RSL24D1 HSPA8 COX4I1 VAPB GRIN1 TCEA2 PPP3CB SEPW1 RASSF8 ADAM23 YIPF1 INA GPR158 SCOC HCN1 UBL5 SYT13 KIF3C SSBP3 SRP9 ALDH5A1 SERINC3 B3GALT2 TMOD2 SOX11 CLTC SERP2 GRINA GPCPD1 ITFG1 PBX3 UBQLN2 CAP2 YWHAB UBE2E3 GRIN2A RFK MTPN MDH1 NRSN2 ATP6AP1 MAP1LC3A NDUFA13 CHL1 SUB1 RAB40B LPPR4 SYT11 NFE2L1 RPS15 ZNF385D NPTXR AHNAK2 REEP5 NEGR1 OSGEPL1 CFL1 RPL37A C14ORF132 LSM4 SUSD4 MAP1B CLSTN1 RPL3 PRKACB COTL1 OLA1 SERINC1 RPL26 RPS4X CCDC25 RTN1 ATP1B2 MAPRE2 RPL23A SLC8A2 DKK3 NCAM2 ATP2A2 MAPK1 TOX3 RPL41 TIMP2 RAB3IP CLGN FAM84A KLC1 WASF1 MTG1 TP53I11 CABP1 ATP5I TRHDE SCN7A TMSB4X THYN1 H2AFZ SKP1 PEBP1 RNF11 DPYSL2 HNRNPH2 NAP1L3 FAM127A KIF21A PSAP SNCA SEC61G VSNL1 CDK14 PSMC3 RP11-20I23.1 ATP6V0C BSCL2 PET100 GTF2H2C_2 PCDHGA6\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "VIP-expressing interneuron" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MT-CO3 MTRNR2L1 MT-ND4 MT-CO1 MT-ND2 MT-ND3 ATP1B1 LRP1B MTRNR2L6 TBC1D15 MT-CO2 MT-CYB KIFAP3 MT-ATP6 SLCO4A1 DNAJC6 RPL32 ZNF385D UQCRC1 SYT1 DPF3 SLC38A1 SLC6A17 ARF5 GPM6A GUCY1B3 CSDE1 HSP90AA1 GOT1 GAD1 TMEM120A NR2F2 RPL13A SSBP3 NAPB KIT ARL6IP1 SCOC KIF21A MAGED1 VAMP2 BLOC1S1 PNMA2 WIF1 ROBO2 THSD7A STXBP1 CHMP5 RPS28 ACTG1 MORF4L2 RPS27A MT-ND1 PROX1 CADM2 KIF1A CDH13 ARF1 FAM149B1 SNRPN DNAJC5 ATP1A1 HDLBP MTATP6P1 CAMK4 EDIL3 CDC42SE2 HS6ST3 CA11 RSL24D1 NDFIP1 DMKN GABARAPL1 DNER SERINC1 PRNP TMEM200C KCNC2 AIMP2 MAPK1 RASGRF1 DCLK1 RTN4 UBC TMEM35 RPS5 UTRN PPP2R2B ERBB4 SLC12A5 MTRNR2L8 TTN SMAP2 SEPW1 ATP6V1B2 BASP1 ITM2B COX7A2 ENO2 PJA2 SYT13 LGI2 PPIH GSTT1 MTND2P28 CPLX2 STMN2 LAMTOR1 RPL41 MAP1B BCL6 SEZ6 PPARGC1A KLHL5 MTRNR2L12 OPRM1 RP11-219A15.1 ARFGAP2 RPL18A\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "VIP-expressing interneuron" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MT-CO3 MT-CO2 MT-ND2 MT-ATP6 MT-ND3 MT-ND4 ATP1B1 MT-CO1 MT-ND1 SNAP25 SYT1 CHL1 OXR1 GAPDH MTRNR2L12 BIRC5 MT-CYB SYTL2 RAB3B NDUFB5 VSTM2L ACTB RGS12 SMYD2 EIF4A2 SPOCK1 MAP1B GAD1 MTRNR2L8 NR2F2 RPL38 CALM2 VSTM2A SLC6A1 AK5 DNAJC21 TBC1D15 NR1I3 FAIM2 PROX1 DPY19L1 PIK3R1 RPL13A CNTNAP3 CALM1 CHST11 ERBB4 FBXO2 HSP90AA1 COL12A1 FGF2 NEGR1 RTN3 ENO2 SEMA4G IGF1 SPTBN1 MTATP6P1 RELN BASP1 MTRNR2L1 SLC25A22 RAB11FIP5 CALM3 APLP1 PFKP ARL6IP1 MT-ND5 DNAJC5 BCAP31 TMEM35 UBA52 OAT CAMK2G TAC1 TMSB10 OLFM1 B3GALT2 DOCK10 PPM1A SUMO1 NAP1L3 VAMP1 CADM2 MAP4 ITM2B GPM6A GAD2 TSPYL4 RNF11 HMGCR PEBP1 ADAM33 ATP5G3 RCAN2 PRKAR1B RBX1 DNAJA1 VSNL1 TSPAN7 RRM2B MORF4L2 SYNGR3 CHRNA2 RND3 CCK DPP6 SLC39A10 PSD3 MTND2P28 FAM127A SCN1B ARF1 PPIA KCNC2 FAM84A TUSC2 MTND1P23 SLC1A3 CHADL GABARAPL2 MAP1LC3A KIF21A PTPRN2 MAP1A HBQ1 CHRNA6 THY1 RAB3C ANKRD26P3 CD63 MAP2K4 UQCRH MT3 CERS6 SKP1 NDFIP1 RNF208 SELT INCENP HIGD1A PLD3 LANCL1 KCTD12 ATP6V1G1 TOMM20 RAN STMN2 RASSF8 FAM163B BTBD11 ARL4C SNCG ISCA1 PSMD12 DGUOK TUBD1 TLR1 ATP5O COX5B PNMA1 EPHB1 RSL24D1 PTMA PPP2R1A CRKL PPP2R4 RTN4 CACNA2D2 ELFN1 SPHKAP UBE2N REEP2 TUBA1B TUBB2A ARL2BP MAP2K1 NRCAM TPD52 PCSK5 YWHAB LBH TMOD2 GABARAP FTH1 RNASEK-C17ORF49 IDS PPP3R1 RP11-111M22.2 PCDHAC1 PCDHA4 PCDHA9 PCDHA10\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "VIP-expressing interneuron" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MT-ATP6 MT-CO2 MT-ND4 MT-CO3 MT-ND3 MTRNR2L12 MT-ND2 MT-CO1 SYNPR OXR1 SNAP25 TMSB4X IGFBP5 MT-ND1 NPTXR CALM1 SERINC1 ZNF385D THSD7A YWHAG NPTX1 INPP5F RPS28 TUBB2B EIF1B ZBTB20 MTRNR2L8 RAB6B RTN4 PCDHA4 ATP1A3 NAP1L3 PRNP BAG4 RTN1 MT-ND4L SCG2 IDS MT-CYB ARL6IP1 PROX1 RPL37A SERPINI1 ATP2B2 TAC3 RPL39 DCLK1 RPL23A CDK5R1 DIRAS2 SYTL2 RAB3B GLRA2 PSMA7 TBCA C18ORF32 MT-ND5 ATP6AP2 ATP6V1C1 RPS5 CAMK2N2 TMEM130 SLC12A5 ETV5 PRKAR1B TF NAP1L2 HMGCR HSP90AB1 RTN3 ARFGAP2 RP11-111M22.2 ENSA SARAF RPL13A ATP1B2 NUTF2 GPM6A DIRAS1 CHRNA6 ATP9A HDAC1 KCNIP1 AP1S2 CKB FXYD6 CADM2 WASL C6ORF141 PSMC5 ATP1B1 TMSB10 ITM2B GDI1 RAB2A SYT1 KLC1 NR2F2 PPP2CB C14ORF132 PTMA CLIP3 UBB IL6R TMEM59L DPF3 ARL4C GPR56 HPRT1 EIF4A2 STX1B CXXC4 HSP90AA1 PCDH17 IGF1 CD99L2 PNMA1 ARX PDCD5 CTNNB1 ALDH5A1 HNRNPH2 ATG9B FAM107B NDUFB8 MTRNR2L1 CNR1 NRCAM PCYT2 ACTR6 VDAC3 ACTR1A OLFM1 SNCA STXBP1 FAM134A LMO4 MARCKSL1 FAIM2 UQCRB SYT11 CDC42SE2 RPL21 FAM3C MAP2K4 SKP1 TKT NDN JUNB GNG2 EIF1 CAB39 PRELID1 NELL2 VSNL1 TENM3 APP SEPT4 ARF3 TSPAN7 KLHL12 ITFG1 FIGN KCTD12 COX6C BCAT1 ARF5 ERBB4 CLU BASP1 SYT2 NECAB1 GSKIP SEPW1 CALM2 PEG10 NGFRAP1 PCDHB11 PPP2R4 TSC22D1 AES NBL1 SLC22A17 KCNA2 GDA CORT BSCL2 RPL41 RP11-219A15.1 RELN TBC1D15 DNAJC21\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "VIP-expressing interneuron" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MT-CO2 MT-ND4 PROX1 MT-CO3 CCK SYNPR MT-CO1 MT-ND2 TBC1D15 MT-ND1 CPLX2 IGFBP5 MTRNR2L1 DKK3 RPS3A DPYSL2 ASAP1 ATP1B1 RPL8 RPL21 RTN4 ATP2A2 DMTN CALM1 MT-ND3 RPL23A CLSTN1 PSAP RPS28 MAF ACTB PEBP1 CHN1 SNN CLU VSTM2L RPL38 UBC TF PREPL TMX4 ATP6V1F MT-ND4L TMEM70 GRIN2A NAT8L PSMB5 EFR3A TMSB4X CAMK4 ZNF536 ATOX1 WBP2 MT-ATP6 PARM1 OAZ1 NDUFB8 KLC1 PRKAR1B MAP1B EID1 BRK1 PEX5L SALL1 SPTBN1 PCSK1N RPL37A NDUFB1 RPL13A MORF4L1 DCLK1 TRIB2 PAFAH1B2 HK1 RPL41 SUMO2 OXR1 ATP5E SOX2 STMN3 EIF4G2 PTPRM SEZ6 LRP1B MZT2B ERBB4 MT-CYB ZFAND5 CADM2 BCAS2 SSBP3 RASGRF2 PELI2 TSPYL4 PRKACB LANCL1 PGM2L1 OXCT1 VIP ARL4C HMP19 GAPDH CDK5R1 NPTN TSPYL1 SCN3B KCNA2 NEGR1 CIAPIN1 DRAP1 GPM6A SP8 TRPV2 ARHGAP35 NBL1 BASP1 SEZ6L2 APP FAM134A TGOLN2 KIAA1211 ATP1A3 AP3S1 HTRA1 RPL13 TBCA SLC25A6 ELFN1 SYT3 ANAPC13 FAM3C GPATCH4 CALM2 CXCL14 PDZD11 ITPR2 HSP90AB1 RAB3A QKI PFDN4 PEA15 CKB RPL7 CLTC ATP6V1A GRIN1 PPP2R2C RPL12 NFIA PFN1 EIF4A2 RAB3C DNER YWHAZ ACTR1A NCAM2 HSP90AA1 PPP2R2B SKP1 GDI1 ASIC4 SLC22A17 CAMK2N2 SLC9A6 NUDT21 RPL31 TSPAN7 KIFAP3 CYP27A1 DNAJC6 COX4I1 ARL6IP1 RPS15 SNCB RTN1 ATP1B2 PPP3CB SYTL2 RP11-20I23.1 IDS RP11-219A15.1 ATP6V0C RPL3 RPL18A RAB3B RPL36A\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "VIP-expressing interneuron" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: SNAP25 ATP1B1 RAB3B MT-CO1 THSD7A MT-ND4 ARL6IP1 RPL13A VAMP2 NGFRAP1 FXYD6 RPL35 NR2F2 SERF2 RHEB RPL26 RPS15 ATP1A1 RPL13 PIN1 MT-ATP6 HNRNPH2 ATP5E UBE2N SLC9A9 SERINC1 CALM2 HMP19 SYN1 CAPZA2 RTN4 UQCRQ GAD1 OAT RTN3 CREG2 MT-CO2 CERS6 TERF2IP SYNPR S100A6 ATP5I GAPDH POMP MT-ND3 MT-CO3 RPL41 ATP6V1A YWHAG CKB DNER RTN1 GSTP1 RPL37A CCDC184 UQCRC1 GDI1 ATP5G2 NAP1L3 ATP1A3 STMN1 EIF1AX MTATP6P1 CCDC25 USMG5 RSL24D1 SRM RPL11 NDUFB4 RAB6B SEZ6 SNX10 CMAS MAP1A APP OXR1 SNCB PPP2CA PRKAR1A PSMA7 NDFIP1 DPYSL2 RAB6A VPS35 UROS NCALD NDUFAF3 RPL15 IDS LIPT2 CLIP2 GRIN2A PTMA GRIN1 SYT1 RAB5C CD99L2 MORF4L2 ATP9A C11ORF31 PRKACB PCBP1 TMSB4X RCAN2 KCNAB3 DIRAS3 SEPT4 CLSTN2 HPCA NFIA AP1S1 MTRNR2L12 ARL4C SLC9A6 ATP6V0B RAB3A COX4I1 ADAMTS1 HDAC1 TOLLIP GPM6A RPL32 MGST3 TUBB2A HIGD1A PFKP VSNL1 PPP3CB PNMAL1 CALM1 ATP6V1E1 MAPK1 SYT5 UBE2M RPS3A GHITM RPL18A RPL23A NREP TCEB2 DMKN STRAP FKBP8 SLC8A2 C18ORF61 RNF11 COX6C STX1B SLC22A17 CABP7 CSDE1 MORF4L1 HAPLN4 AK5 GDF10 RIT2 PRNP GAD2 LANCL1 SERPINF1 REEP5 RPL8 SLC6A17 RP11-632C17__A.1 CDK5R1 CAPZB PTPRM TSPAN7 ZNF365 MDH1 YWHAZ SLIT1 MACROD1 ATP2B2 CFH UQCR11 ACTB NEGR1 SULT4A1 KCNAB2 CLTC MT-CYB STX1A FABP6 GPX4 TMEM59L ATP6V1B2 ARF5 CXCL14 DNAJC5 TPD52 MRPS21 ACTG1 CNRIP1 DCC POLR2I RHBDD2 SCOC GPX1 SCD5 CPE SEC61G SUCLA2 KIT ARF3 CHCHD2 VIP SPOCK1 GADD45GIP1 PPDPF MRPL33 NME1 DNAJB6 RPS6 PTGER3 MAP1B ATP6AP2 CLIP3 TSHZ2 SOD1 CNTN1 VSTM2L CAMK2N2 ASPDH RPL31 MZT1 STK39 PTGDS NUDT21 CLSTN1 TSPYL1 FABP3 DYNLL1 CCDC152 NPY SCN1B ELAVL2 CLU NAT8L DDN ERBB4 NPTN MT-ND5 CTSD ERH OCIAD1 PPTC7 ADD2 ITM2B ARHGDIG SNRPE PLD3 AURKAIP1 TMA7 MYL6 CRIM1 ARPC4 AP2M1 NDUFC2 KIF1A MAP2K4 RPS28 NUTF2 PKM NDUFB2 DPP6 TMSB10 NCEH1 VDAC3 DNAJC21 TBC1D15 RPL3 GABARAP RNASEK-C17ORF49 MIF ATP6V1G2 RPS26 RP11-219A15.1 PCDHGA6 PCDHGA5 PCDHGA10 SYTL2\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "VIP-expressing interneuron" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: RPL26 RPS15 RPL37A ZNF385D RPL41 RPL6 ATP1B1 PRKCB CALM2 RGS12 RPL35 SYNPR RPL12 DUSP1 MT-ND1 MT-CO1 ATP6V0E2 RPLP0P2 MT-CO3 GRIK1 NCALD RPL13A HINT1 LAMTOR1 CADM2 RPS2 ERBB4 FXYD6 OLFM1 TENM3 RBX1 TAC3 GPR149 LCNL1 RPL13 DYNLL2 ESCO2 RAB6B KCNA2 CPE SV2B KIF1A NHP2L1 ATP6AP2 UQCR11 LDB2 SPOCK2 STXBP1 FTL PDE1A OR6D1P PTPRN BSN RTN3 TSPYL1 EIF5A2 UBB PTMA ATP5J2 CNTNAP5 YWHAZ SCN2B ARL6IP1 PPIA TUBB4B SELM FTH1 PAM HRH3 PTPRZ1 PNOC CLDND2 CERS6 TUBB4A EIF4A2 SLC22A17 MZT2B NFE2L1 CAPZB PTCHD4 ATP6V0B SHISA8 PPP1R7 ATP5E ANK1 GDI1 CCDC184 PEBP1 NAP1L5 UQCRH ASIC4 NAT16 PSMC1 SCN3B PSAP NPTN ATP1A3 OST4 MT-CO2 RPL11 RPL17 RPL15 CTSD SHARPIN RPL3 NDUFV1 DPF3 ROBO3 ARL4C EPDR1 DNAJC6 MTRNR2L1 ELAVL2 TP53I11 AP3S1 RAB27B MFN2 RPS4X BRICD5 SYT2 BSG MAP1B GABARAPL2 JUND TMEM160 CHL1 TMEM141 SLC25A6 MT-ND3 RPL32 PRKACB NDUFA13 SLC12A5 SCN1A GNB1 PNKD ARX RAB1A RPL23A SNCG SYT11 SERINC1 CXXC4 GDA LRP1B ATOX1 SLC9A6 ACTB SLC6A1 TSPYL4 SEZ6 EGR1 GNAQ DPP6 SPTBN1 DYNLL1 NDUFB1 CADM3 MT-ATP6 SYT13 HSP90AA1 NGFRAP1 SYNGR1 SCD5 CDC37 PHYHIP UBA52 LGI2 FAT1 PNMAL2 MTCH1 SOD1 GHITM RPS27A PDE9A HTRA1 POLR2M RPL10A PCSK1N BIRC5 RTN1 DNAJB6 TMX4 OPCML TUBA1B CFL1 RPL36A NRGN PPM1A RAB3A NMUR1 LL0XNC01-16G2.1 CPLX1 RTN4 USMG5 TMEM14A RPS6 RPL17-C18ORF32 SPX RPL18A MT-ND2 EDIL3 PJA2 TCEA2 SIRPA BCAS2 WASF1 SEZ6L VDAC3 FAM96B SLIT1 ISCU RP11-20I23.1 ATP6V0C TBC1D15\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "VIP-expressing interneuron" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: CCK ZNF385D TAC3 VIP DCLK1 SYT1 MT-CO1 ERBB4 MT-ND4 APP CALM1 RPS28 RTN1 MTRNR2L12 GAPDH SYNPR CTC-575D19.1 FXYD6 SLC12A5 MT-ND3 MT-CO2 ATP1B1 RPS5 PCP4L1 NDUFA1 CKB MTRNR2L8 ARL6IP1 PPP2R1A PROX1 ATP5J2 CLIP3 BAG4 ATP5B CALM2 ROBO2 NEGR1 CALM3 PAM YJEFN3 EIF4A2 SLC6A1 PTHLH MT-CYB PCP4 ACTB RPL6 SLC9A6 TENM3 IDS RPL7 REEP5 PJA2 NDN QKI ARF1 ABHD14A NMNAT2 TMEM258 RPL18A AP2M1 ATP6V0E2 SLC24A3 HSP90AB1 NBL1 PTPRS FAM96B ENO2 SPARCL1 CDK5R1 NDUFA13 CADM2 STMN4 UQCR10 IDI1 TUBA1B TSPAN7 SPOCK2 PEBP1 MIF PIK3R1 OXR1 FTH1 RPS3A LPPR4 RBX1 CD99L2 HSP90AA1 NAPB TMEM70 BEX4 PGM2L1 RTN3 NPTX2 ALKBH7 DPYSL2 KLC1 RAB5C CDH13 C14ORF2 SPCS2 PSMB5 C2ORF80 PRNP BEX1 RGS16 SCD INPP5F RRM2B TM2D3 WFS1 MT-ND4L GOT1 RPL15 ITPR2 CNTN6 ALDOC MTFP1 ARL4C PTMA MBP SYT17 MT-ND2 VAMP2 CNTN1 ATP6V1A MMD RPL37A PRKCE NDUFB2 COA3 HK1 MPC2 NCDN HINT1 WNT4 CREG2 CHCHD2 GAD1 SPOCK3 SNX10 NDUFB1 RPL38 TRHDE KCTD12 OPCML NME1 RP11-632C17__A.1 FARSA MDH1 PPP2CB THSD7A RAMP2 WBP2 UBE2L6 MTUS1 FIS1 NDUFS5 SNRPN SEPT4 SLC1A2 MAP1B SCN1A DRAP1 SAP18 CDK14 PCDH8 PNMA2 RAB3A SCD5 NGEF PPIA GUK1 SUSD4 KCNC2 C1D ENO1 NAP1L3 CPNE2 DNER ACTG1 STK24 EHD3 SLC25A6 RNF208 TOMM7 RSL24D1 PFN2 ZFAND5 RPL23A ARHGDIG DNAJB6 RTN4 HTR1F EIF1AX TMX4 UBE2QL1 PRKCG GPR158 C19ORF10 PCDH19 MAP4 PSMA7 SYNJ1 SCOC BSCL2 ARHGAP35 MARCKSL1 C16ORF13 NDUFS6 PREPL TGOLN2 VSTM2L SNAP25 ATP5O RPS27A CTSD MAGED1 D4S234E RHOB SERINC1 MGST3 PGRMC1 RCAN2 ASIC4 ITM2B RPS4X DGKG RPL8 CCM2L RLIM NPR3 KIF1A RAP1GDS1 RAB2A COX7C CISD1 AP1S2 NTNG1 TOMM20 ARL8A SMOC1 UBE2V2 CHRNA2 MT-CO3 UQCRB LANCL1 DKK3 ACAT2 RGS12 CCDC85B ATP1A3 NDUFA4 YWHAZ STMN1 TERF2IP MT3 ADAM33 ANXA7 CFL1 PSMC5 CAMK4 MAPRE2 AP2B1 MRPL20 DYNC1I1 SSBP3 PPP3CA KIFAP3 IGFBP5 GABARAPL1 TBC1D7 SSTR2 RPL35 DOCK10 FTL ZBTB18 SLC22A17 PSMD8 TIMP2 IGF1 BRK1 ANXA6 CHGB ATP5E PTPRN SNRPE PRKACB ATP5C1 GPM6A RAB6A TMSB10 SYTL5 MAST3 RPL12 HSPA8 AP2S1 STMN3 VSNL1 NGRN NPTXR DLX1 LMBRD2 ARL8B GNB1 CNTNAP5 ATP5A1 IFT52 NDUFB7 GSG1L TPD52 CBX6 MRAS VIPR2 FAM219A UQCRQ MYL6B RPS2 HMGCS1 NPTN STX1B ATP5J MTRNR2L1 UBL5 SYN2 HS6ST3 GUCY1B3 CLPTM1 BSG PRKCB RPS15 LMO4 NDUFB11 DNAJC6 HMGCR RPL21 RPS26 RPL17 RPL13A ALDOA MTRNR2L6 RPL3 RPL17-C18ORF32 TUBB3 RP11-20I23.1 RPL41 MCHR2 ATP6V0C RPL36A TF CYB5R3 BIRC5 ESCO2 TBC1D15\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "VIP-expressing interneuron" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: SLC1A2 SLC1A3 GLUL PTGDS MT2A ALDH1L1 ZNF385D CLU SPARCL1 RPL12 GFAP MT1X CST3 ANGPTL4 CPE TUBB2B MT-CO3 NRCAM GADD45B MRVI1 ATP1A2 NDRG2 CHI3L1 TBC1D15 MT-CO2 ZBTB20 GPR98 GSTP1 GPR56 SNAP25 METTL7A ACTB RPL37A EDNRB MT-ND2 MYBL1 GPM6A HSD17B14 COL5A3 GRIN2C IFITM3 MT-ND3 HMGCS1 CNTNAP3 MT3 PTPRZ1 HILPDA MT-CYB TSC22D4 TGOLN2 PLSCR1 PPP2R2C EFEMP1 PLIN2 TIMP3 PJA2 SERINC1 RRAGA DPF3 LDB2 SARAF MAP7D1 CBX3P5 MT-ATP6 APOE LCNL1 CAP2 NDFIP1 UBE2E3 PAMR1 SUMO2 CLDND1 PCDH17 CXCL2 UBE2D2 PBXIP1 ITM2C MYO10 FAM189A2 BASP1 TMEM123 FASN MLC1 CCL2 SELM SCD EID1 HIF3A VIP ENO1 WBP2 CORO2B ATP5C1 S100A6 CLTC STON2 WIF1 FKBP1A MT1A RTN4 ROBO3 AEBP1 RIT2 ITPR2 EPHB6 HSPA8 ZFAND5 STXBP1 TMEM258 MAST3 CLSTN1 ACTG1 PPP5D1 VWA1 TPI1 RPL13 BRK1 MRPL51 NDUFA13 CRIM1 TSPAN7 TPT1 NSDHL PREPL PREX2 RAB2A CADM2 SOX9 COX7A1 TMEM141 NTNG2 CHN1 WFS1 IQSEC1 UQCRC2 COX6B1 MT-ND4 FTH1 PAK1 FGFR3 GLIS3 USMG5 PDZD11 DMTN PITHD1 PHB GNAQ RP11-111M22.2 RAMP1 C1ORF95 RPS12 CPNE8 MORF4L2 NDUFA12 ZIC2 RPL39 ID2 PSMC5 ZFP36 BCL6 MTATP6P1 CLIP3 AKAP12 CKB CDC37 ARF5 S100A13 OLIG1 COX6A1 TRIP6 HK1 RPL35 ATP13A4 CYBRD1 GABARAPL2 MYEOV2 PAM APOL6 ASAP2 EIF4A2 SIRPA NDP NGFRAP1 RAB34 NFIA RORB MT-CO1 NDUFB8 FGF2 NPAS3 SKP1 GSTO1 F3 TMEM59L ADAMTS17 MYL6 PFKP FNDC4 MRFAP1 VAMP2 PARP14 FAM84A SLC25A4 B2M C19ORF10 GOLIM4 CD63 MRPL15 SLC39A12 COPE SDC4 SV2B GPR171 PGK1 RP11-219A15.1 IDS GABARAP AC244489.1 PCDHGA6 PCDHGA5 PCDHGA10 DNAJC21 SYTL2 RAB3B\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "astrocyte" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MT-CO1 ANGPTL4 GAPDH PTGDS SYT1 MT-ND2 ATP1B1 CLU SLC1A2 F3 ALDOA SPARCL1 RPL41 GPCPD1 ITM2C TBC1D15 ALDH1L1 SDC4 GADD45B MT-CO3 EIF4A2 MT-ND4 MT3 PGK1 NEGR1 PRNP PKM ATP5A1 MTRNR2L12 CALM1 LCNL1 PFN2 GPM6A HILPDA CPE RARRES2 VIM SLC1A3 FAM189A2 SLC9A6 NDUFAB1 ATP1A2 GAD1 RPL37A EIF4G2 VEGFA SNAP25 SEZ6L2 MORF4L2 PDGFRB TUBA1A TMSB4X PGAM1 ARFGAP2 TAC1 BST2 MTG1 MPPED1 ATP5J2 RASSF3 STUB1 PNMAL2 TMX4 NDUFB2 RPL36A LANCL1 SLC24A2 PARM1 CRIP2 TMEM144 MT-CO2 REEP5 RAB11FIP5 PIEZO1 SAP18 SLC22A17 DNAJC4 GPRC5B SLC6A17 SYT17 SPOCK3 CACNA2D2 RHEB CLIP3 ZMAT2 SLC25A48 NDFIP1 ATP6V0D1 HK1 GPX4 MAP2K2 STMN1 SOD1 TPGS2 OPCML CIAPIN1 SPCS2 ZFP36L2 SCD5 YBX3 ANAPC13 PREPL RRM2B QKI MFSD6 OLFM1 PRKACB CST3 CHI3L1 GNAQ PSD3 CTC-575D19.1 HEPH SNCG PLOD2 CDC37 EDNRB GNB1 FAM134A ITPR2 COX7B ATP6AP1 ADIRF MTATP6P1 CD63 GUK1 COPS8 CHCHD2 TMEM164 C1S SEC61G BANF1 ZFAND5 LGALS3 TMEM14A PGRMC1 TBCB HDLBP UQCRFS1 TCEA2 RPS5 FTH1 EXTL2 PMP2 RPL31 ATP1B2 GRIN2C MORF4L1 TMA7 RPL26 GSG1L C10ORF54 HSP90AA1 AGT MAP1A JUN NDRG4 EDF1 MAP1B APLP2 LPPR4 PFKP H2AFZ UQCRH RPL38 ATP1A1 TSC22D1 NRCAM PTPRZ1 MT1X GRIN2A C19ORF43 MT-ATP6 WASF1 TMTC1 GPR56 CACNG3 AEBP1 KCNAB2 ZBTB20 CLSTN1 MTCH1 PIN1 RPL35 NGFRAP1 NDUFB11 DNAJB6 COL6A1 ZCCHC17 TPI1 PAQR8 RAB6B ADD2 TAGLN3 RPS2 KCNC2 MT1G DNM3 PPP2R1A SRP14 APLP1 ASAP2 PNMA2 SARAF AP2M1 ATPAF1 UBE2QL1 PCDHB10 RP11-632C17__A.1 AKAP12 SYT11 VSNL1 GRIN1 NAT8L ARF5 FTL USP5 DPYSL2 SNCB ATP2A2 FOS GPR98 ISCU NDUFS5 SSBP3 ANK1 ZNF385D SYTL2 RAB3B RP11-20I23.1 OR6D1P NGRN C11ORF31 RPL13A TUBB3 ATP6V0C AC244489.1 TF\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "astrocyte" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: SLC1A3 GPR98 SLC1A2 PTGDS GLUL ADM VEGFA GAPDH NDRG2 RAB3B SYTL2 CALM2 PPAP2B NFIA MRVI1 FGFR3 MTRNR2L8 CLU PTPRZ1 BSG CAMK2G COL5A3 ATP6V0E2 GPRC5B ATP1B2 NPAS3 SLC6A1 MTRNR2L12 ARFGAP2 ATP5G2 PCDHGA5 UBE2V2 SDK2 UQCRHL MDH2 RORB ADAM33 GPR37L1 ENO2 UQCR10 RAB11A QKI UBC KLHL5 SRP14 PDE1C PFN1 ARHGAP42 PEBP1 NUAK1 ARF3 ITGB4 MT-CYB IL6R MYO10 PI4KA DPYSL2 RHOB BIRC5 SLCO1C1 SCD5 ATP5J AXL RPL31 MEGF10 SGCD NDUFB1 GOLIM4 APOE ARL4C CSDE1 RPS28 AGT FTL WFS1 RPL37A METTL7A PRNP ANGPTL4 MAP1B TSC22D4 SLC17A7 IGFBP7 SPI1 ZBTB20 UROD FBXW11 MAF LCN12 ID2 SPTBN1 ATP11C PPP2R2C SPARCL1 TMEM230 ATOX1 NACC2 MT1E PDLIM5 OLFM2 TIMP2 IGFBP5 HIF3A ATP1A2 CPE UQCRC2 GRINA UBL4A PGK1 RPL3 ALDOA RPL41 OR6D1P TBC1D15\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "astrocyte" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: SLC1A2 SLC1A3 ZBTB20 GPR98 MT2A SPARCL1 FTH1 CPE ATP2A2 WIF1 CHN1 SLC14A1 ACTG1 ATP1B2 UQCRC1 ATP11C ATP1A2 HGF PTN SLC9A3R1 F3 SARAF HSPA2 SOX2 BMPR1B COA4 ACACB MT-ND5 GLUL ZFHX4 NFIA HHATL MT-ND4L IGFBP6 PPAP2B MRPL20 CFL1 PSD3 PREX2 ATOX1 CYP2J2 SUCLA2 VDAC1 PAPLN PRDX1 SH3GL2 RHBDF1 ZCCHC24 CADM2 TIMP3 RPS27A CDC14A YWHAB EGFR USMG5 TMEM59L BSG EDNRB RPL35 GRM3 MT1G TSPAN7 TMOD2 MYEOV2 NECAB1 RP11-139K1.2 GPR56 MT1X TBC1D15 DKK3 SPOCK2 CNTN1 MT1F FBXL16 FAM198B RPS5 CLU SLC39A12 GPM6A RPS26 KCNJ10 SLCO1C1 SYT11 ATP13A4 PLCB1 PSAP NPTXR PTGDS MAL ENO1 CAMK4 ELFN1 DPYSL2 MT-CYB ERBB4 MGST1 PTPRZ1 SRD5A1 MRVI1 ATP2B4 VIM SAMM50 TBCA ARHGAP24 GPRC5B FTL NDUFA4 NDUFS6 SLC40A1 TMEM150C MT1E RPL13A GTF2H2C_2 ESCO2 SYTL2 ZNF385D RAB3B PCDHGA6 PCDHGA10 PCDHGA5\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "astrocyte" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: CHI3L1 CLU ANGPTL4 GFAP MT-ATP6 MT2A HILPDA MT-ND3 MT-CYB MT-CO1 ACTG1 MAP1B MT-ND2 SLC1A2 MT-CO3 F3 MTATP6P1 HMGCR MT-ND4 PTPRZ1 APOL6 TUBB2B MTUS1 CST3 ENO2 GLUL PTGDS GAPDH CDC37 KCNJ10 RPL11 SNAP25 PAMR1 DPYSL2 NDUFB1 GPM6A NDRG4 GPR56 TUBB2A DGUOK PLD5 STMN1 RPS4X ZFP36 SLC1A3 EDIL3 PCDHGA6 RHOB MT1E SPARCL1 SERF2 SCD5 ATP6V0E2 OAT COX5B ONECUT1 AP2M1 GPR98 GPR37L1 HSPB1 KLC1 RAB6B MORF4L1 TPD52 DKK3 RPL10A ACTB BGN CRIM1 MLC1 ITFG1 ATP5G2 METTL7A FTL WIPF1 PHYHIP CRISPLD2 AQP4 RAB31 MT-CO2 RAN BAI2 COX4I1 DMTN LDB2 TSPYL4 TSC22D4 HNRNPH2 RPL41 UQCR10 HSPE1 CHL1 TMSB10 MDH2 CDKN1A SLC25A5 ATP5G3 ARL6IP5 PRKAR1A ID2 CALM1 CHN1 BHLHE40 FTH1 S100A16 NDUFB3 SMOC1 PDGFRA ERBB4 ZFHX4 BCL6 C7ORF50 WBP2 SUMO2 IQSEC1 TCEB1 STMN4 UROS NDUFAF3 ARL2BP FAT3 MT1X PREX2 DPP6 SLC7A5 C2ORF80 SLC38A3 COL4A5 NEK6 CAMK4 VDAC1 CYP26B1 SYT11 TOMM20 NGFRAP1 UBE2M SCD COX7A2 ALDH1L1 DIRAS1 NACC2 BTBD1 MAP4 QKI PRKCDBP ARFGAP2 SSTR2 JUNB ARL6IP1 HSP90AA1 HS6ST3 NRGN EDN1 WIF1 SLC17A7 ATP1A1 SELM VSNL1 RNF11 FBXW11 STRAP ATP6V1E1 CNP TMEM147 MAP2K4 ZFAND5 DNER GRIN2C RAB5C DPF3 NPTXR ATP2A2 ALDOC RHOC ACSL5 MPC2 LCNL1 DDR2 SEZ6L2 NDUFB11 C1QBP SYPL1 PSAP CCK CD63 CSDE1 TENM1 VCAN INPP5F CAP2 RASL12 ATP6AP1 NDUFA4 SLC25A22 UHMK1 PGK1 CLTA CPE SLC2A1 VEGFA PLSCR1 PSMD12 NAP1L3 FOS ZFP36L1 COL5A3 SLIT1 RBX1 PTN CYCS COL9A1 ANXA7 FIGN ALCAM CLTC EGR1 TUBA1B TUBA4A APLP2 LGI3 ATP6V1C1 ATP6AP2 CDH7 COPS8 CMAS MANBAL NFE2L1 MARCKS RAB3B ZNF385D SYTL2 TMEM130 IDS NSF B2M RPL7 ATP6V1G2 TBC1D15\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "astrocyte" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: SLC1A2 CHI3L1 SLC1A3 FTH1 APOE GPM6A ID4 MT-ND4 SPARCL1 F3 ESCO2 ITM2C CLU GJA1 CST3 COX7B HTRA1 PTGDS SERPINE2 TUBA1A NDRG2 TUBB2A MLF2 PSAP CPE POLR2M NRCAM STMN3 HOMER1 PTPRZ1 MT-ND3 ATP1B2 RPL13A METTL7A ARHGAP29 ANGPTL4 RPS28 MTRNR2L1 GADD45B GFAP OCIAD1 TMSB4X TSC22D4 EPHB1 MRAS MRVI1 GADD45GIP1 DYNLL1 BIRC5 SERINC1 RGS16 FIS1 PREX2 MT1M ARX ZNF385A FGF2 TUBD1 IGFBP7 APOL6 MT-CO2 RPL3 NDUFS5 RPL23A RPL32 EFEMP1 JUNB CALM1 EPHX2 FOS FKBP4 TRIB2 ATP1A2 MT-CO1 SARAF C10ORF54 GPR98 MGST3 CDC37 C19ORF70 DNM3 SNCG MT2A ALDOC ACTR10 NDUFB7 NARS SCOC C6ORF1 COX7C C9ORF16 YAP1 PTN TSPAN7 SPOCK2 GAPDH GLUL ARL4C MT-ND4L SSTR2 YIPF1 ATRN RPL13 XAF1 CPNE8 PRDX2 KIF1A NAT8L ETNPPL AQP4 GRM3 MT-CO3 IDS NDUFA11 COL5A3 OAZ1 KLHL5 ITPR2 NDRG4 NEFL DNER LZTS1 IFITM3 C6ORF141 CKB MT3 GPR37L1 ERBB4 CTC-575D19.1 DDAH1 SELM MTG1 PINK1 S100A6 MGST1 VDAC3 CADM2 RPL15 CALM2 CMAS RPL37A MTRNR2L6 EMX2 HSP90AB1 SLC6A1 DPYSL2 PPM1A RPS15 SMS RHBDD2 ZFHX4 DNAJC5 DPY19L1 NDUFB2 RAB1A GFRA2 BASP1 ACTG1 RTN1 CAMK2G MDH1 TIMP2 PPAP2B DNAJC21 TBC1D15 SLC26A10 GABARAP ATP6V0C RPL17-C18ORF32 RP11-20I23.1 RPL17 GTF2H2C_2 PTCHD4\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "astrocyte" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: SLC1A3 SLC1A2 MT2A CLU SPARCL1 RAB3B RTN4 SNAP25 PTGDS SCD5 SNAP91 CST3 NRGN BIRC5 MT1X FTH1 TBC1D15 PSMA7 ACTG1 WIF1 CHI3L1 MT-CYB SIGIRR MAP1B CPE DPYSL2 MYEOV2 GFAP SLC9A9 HINT1 IFITM3 GPM6A ANGPTL4 MT-CO1 GJA1 MGST1 PTPRZ1 GAPDH ATP1B2 NDRG2 PSD3 GLUL ITM2C TPT1 CDC37 NAT8L UQCRQ CLPTM1 SLC12A5 SYT11 MLC1 ARPP19 PPAP2B PPP2CB AQP4 MYO1B CCL2 TSPAN7 APP ATP5G3 OLFM1 COX7C EPS15 HMGCR YWHAB WASF1 PRKCB APOE ZBTB20 ITGB4 QKI ARF1 CTNNB1 SMS MTRNR2L8 TIMP3 MRPL55 EXTL2 RPL13 LGALS1 GYG1 GPR98 ATP5G1 S100A1 MT-ND2 WLS CRIM1 SNCG ZFP36L1 TSC22D4 CPLX1 COL6A1 ATP1A2 ID4 PKM HSP90AA1 MTRNR2L12 CTSD ATP5I GADD45B F3 CNTNAP3 MT3 SNX3 FAIM2 CCK MAP4 PPP1CB MORF4L1 EPHX2 TCEAL2 RPL23A KCNJ10 RTN3 PMP2 RSL24D1 APLP2 NDUFA11 SLCO1C1 NCDN DPY19L1 LRP4 EIF1AX SULT4A1 MT-CO3 NDUFB11 BSG C6ORF1 ENO2 PPDPF HSPB1 PFKP CACNB1 DNAJC5 SEPW1 SUMO1 C9ORF16 POMP TBCB NKAIN4 SPCS2 GJB6 SCOC NACC2 DLC1 MAP1LC3A PDCD5 YWHAQ SOX9 ATP6V1B2 COX4I1 PAQR8 HIGD1A NPTN SPTBN1 VAPB GOLIM4 MAP1A TSC22D1 RPL11 AHNAK PTN MT-ND5 ATP5A1 NUDT21 RPL21 IDS TUBB3 NGRN SERPINA3 SYTL2 ARFGAP2\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "astrocyte" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MT1E SLC1A3 MT-ND4 NACC2 ATP1A2 MT-ND3 MT-ND2 GPR98 GPR37L1 MT-CO3 SLC14A1 MTRNR2L12 CALM1 QKI HIF3A PRNP NAT8L EPS15 CPE PTPRZ1 ZBTB20 ACTB MT2A MT-CO2 LRP4 SYT17 EFR3A STMN3 PDLIM5 UBL5 C6ORF1 GAPDH SCD NFIA SEC61G MT1X SCD5 CDC37 LMBRD2 SPON1 AQP4 COX6A1 F3 COL5A3 INHBB RP11-111M22.2 MRVI1 VEGFA MRPL37 THY1 ATP5E TMOD2 EDIL3 C14ORF2 IFITM3 PPP2R1A MBP MYO10 TMEM144 MT-ATP6 RBX1 FTH1 PCDHGA5 UQCRB EDNRB MT3 GTF2B SLC22A17 GPR56 UQCRFS1 PIFO FKBP4 ACSS1 COPE RPL10A SLC1A2 GNAQ KCNA2 ZFAND5 KIFAP3 JUND AGT PLP1 AKAP12 GPM6A RPL11 OLIG1 MARCKSL1 SERINC1 GJA1 MT-ND1 KCNJ10 SEMA3A GABRG1 FTL VPS35 ARL6IP5 GLIS3 RPL32 NDRG2 UTRN PPAP2B ERBB3 GLUL METTL7A OPALIN AHNAK2 ATP5J2 ITGB4 HTRA1 APOLD1 PTGDS HSPB1 ARL6IP1 SLC9A9 RP11-20I23.1 MIR6723 MT-CO1 ATP6V0C RAB3B SYTL2 ZNF385D PFKP TUBD1 HNRNPA1P40 CFH\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "astrocyte" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: SLC1A3 SLC1A2 AQP4 S100A1 GJA1 RAB3B NFIA GPR56 FTL CKB ATP1A2 KIF21A GAPDH COX17 SNAP25 ATP1B2 HIF3A ATP13A4 CTNND2 GLUL NAT8L MT1E APOE GPM6A MRPL47 STON2 ARSE TMOD2 SPARCL1 RPL41 SAP18 ACACB PRNP MBP LMO3 MT-CO3 MAST3 EGFR NDUFA2 CLU MT1G METTL7A ENKUR GABARAPL2 PSAP ANGPTL4 MIR3916 NGFRAP1 ATP6V1B2 FAM69C KCNA2 ATP1A1 OXCT1 TIMP3 GPRC5B MTRNR2L12 MT2A CAMK2G MT-CYB PPIH COL5A3 SLC14A1 RTN3 FAM189A2 INHBB MT-ND4 BAALC SPTBN1 KLF10 NDRG2 FOXO1 PRDX1 CPE ARPP19 HILPDA MORF4L1 PON2 CYP27A1 GLIS3 PLCB1 SELT WIF1 FLOT2 ACSS1 VPS35 CNTNAP3 GPR98 GTF2H2C_2 PCDHGA10 PCDHGA5 PCDHGA6 PLEKHD1\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "astrocyte" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: SLC1A2 CLU PTPRZ1 GJA1 NFIA SLC1A3 MT3 RAB3B FGFR3 RPL21 MT2A PAQR8 HEPN1 AGT MTRNR2L1 APOE FBXW11 ATP1A2 ATP1B2 PLEKHG1 TBC1D15 CD63 GOLIM4 SLC14A1 MEGF10 TSPAN7 RHOB ITM2B RPL26 NDUFA5 CHL1 CADM3 TF TMEM100 ZFHX4 GPR98 CKB FGF12 KCNA2 COL5A3 EFEMP1 RPL37A CAMK2D THBS2 MFGE8 DIO2 SDC4 HHATL KIAA1755 ITM2C VPS35 AHNAK CD99 C11ORF84 RPS27A EIF4A2 EIF4G2 ZBTB20 B3GNT1 RTN3 TUBB2A PFDN1 TENM3 HEPACAM FIS1 SPTBN1 CADM2 SOX2 SARAF RAB6A HK1 EIF1 TRIL GPRC5B RAB31 BNIP3 MT-ND1 FAM69C PLD3 SPARCL1 GFAP ATP6V1A NAT8L GLUL ZFP36L1 RPS2 MT-CO3 CALM1 ATP1A3 KIF21A PDCD5 BMPR1B NKX2-2 CTNND2 PDK4 SERINC1 RHEB SCD RPL38 BCL6 MYL6B TUBB2B MAPK1 MTRNR2L6 HNRNPA1P40 PLEKHD1\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "astrocyte" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: SLC1A3 SLC1A2 SPARCL1 CLU MT3 MT2A NFIA RPL41 ATP1A2 ARHGAP35 ITM2C ZBTB20 PTGDS GPM6A MT1E RAB31 RPL13 AQP4 VDAC3 RPL11 GPR37L1 FTL ESCO2 SLC14A1 PEBP1 MYO10 COX17 MT-ATP6 ATP1B2 ACTL6A GUK1 STAG3L5P GPR143 NOTCH1 PPAP2B ACACB GOT2 ACSS1 ANGPTL4 MRPS21 MT-CO3 DKK3 PCDHA10 SSPN AGT HSP90AA1 UQCRQ TLE4 PIK3R1 VEGFA MGST1 HTRA1 RTN3 FTH1 SPTBN1 RP11-111M22.2 WDR4 SYPL1 DGKG MAGED1 RPS4X NAT8L GLUL SNAP25 COPE MT-CO1 RPL23A JAKMIP1 ATP5H TERF2IP HOMER1 TOPORS-AS1 ARL6IP1 ATP5B SOX2 IGHG3 RPS2 MT-ND4 PLOD2 ACTB COX4I1 DNAJC4 PADI2 GPX4 C14ORF132 CSDE1 INSIG1 PTN S1PR1 WLS GRIN2C TXNIP NAPA GPR98 PDCD5 HSPE1 MTUS1 CYCS ATP2A2 PSAP CYFIP2 MTRNR2L12 GNAQ PAX6 QKI UBC CD59 MLC1 APOE CPE VIM TUBB4A MT-CYB PAK1 METTL7A ATP5A1 TRIB2 TKT SPOCK2 FOXO1 IGHG1 CLTC ITFG1 C1S SLC25A4 CTNND2 JUND RAB3B ZNF385D\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "astrocyte" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: SLC1A2 SLC1A3 GPR98 ZBTB20 TBC1D15 SPARCL1 MT-ND4 MT-CO1 ATP1A2 MTRNR2L1 PTGDS COL5A3 RAB3B CKB SERPINE2 WIF1 SNAP25 KIF1A ETNPPL CTNND2 AQP4 PPAP2B GPM6A SLC6A1 CST3 EDNRB SCD5 MT-ND3 FGFR3 PON2 ZMAT2 SLC7A10 BSG PDE9A PTPRZ1 TUBB2B SPCS2 GRAMD3 SARAF MT-ND2 ARF5 PLOD2 MTUS1 HIF3A GAPDH TUBA1B MTRNR2L12 UBE2L6 ID4 CAMK2G PREX2 HEPN1 GLUL MT1G CLU SPOCK1 SDF2L1 MAP4 SPOCK2 C11ORF31 ID2 ATP5H ARL8A MTCH1 CTSD EPS15 KCNJ10 TTPA MT-ATP6 ZCCHC24 PTN APOE GJA1 RORB GPX1 MT-CO2 CHMP5 MT2A OLIG2 CTNNA2 ITM2B SIRPA RAB4A PRNP GLIS3 ALDH5A1 ITGA6 GPR37L1 AES ZBTB18 MAL ANXA4 HNRNPH2 GPRC5B RTN4 TMEM63A XAF1 MDH1 MRVI1 TMX4 SYPL1 PFN2 PFKP ITPR2 AP1S2 ETV1 ATP6V0E2 CFH NDRG2 PEA15 MT-CYB NACC2 DPYSL2 PLTP PAPLN DPY19L1 MRAS ZFAND5 CNTN1 MAP2K1 GJB6 MDGA1 GNG5 SLCO1C1 PGM2L1 IFITM3 YBEY RANBP3L IDI1 CDC42SE2 RNF182 CPE SERINC3 PPP2CB PDLIM5 NFIA EML3 ITGB5 QKI RPL3 IDS GPNMB RELN RPL17-C18ORF32 RPL17 SYTL2 TF\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "astrocyte" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: SLC1A3 FTH1 CLU GPM6A CHI3L1 ANGPTL4 MT3 F3 SPARCL1 SLC25A6 ZFP36L1 C12ORF49 FGFR3 ARL6IP1 TSPYL1 GFAP ZNF385D TUBA1B ZFP36 PTGDS GPX3 YWHAB RAB3B SYTL2 ARFGAP2 QKI UQCRC2 MT-ND4 PTMA GPR98 SLC1A2 GLUL GABRA1 SNX3 PNKP NGFRAP1 ACSS1 SYN1 NSF CAB39 HILPDA MAP1B RPL3 RPS28 TMSB10 PPAP2B UBC APOE ATP1A3 KAL1 GPRC5B PDYN ENO2 GJB6 ATP5B PSMC1 TCEA2 GPCPD1 HS6ST2 SHE SEZ6 RPS15 ALDOC CNP YBX3 GADD45B RPL8 GHITM ANAPC11 SYT11 SYT5 ATP6V1A COX5B UBQLN2 FTL VIM VDAC3 DHCR24 CALM1 ATP9A APP PPIA ARHGAP42 AES VAMP2 AQP4 RTN4 COX7C RPL18A HSPE1 MT-CO3 YWHAG SDC4 NRCAM TMEM258 SH3BGRL3 ACTG1 PTPRN HINT1 ARL6IP5 PTPRS AGT PAQR8 PRNP NDUFS5 CAPZB INPP5F MT1X SOCS3 SLC9A3R1 ZNF365 SPOCK2 RAB6B COX6A1 HSP90AA1 NAT8L XAF1 RPL10A BRK1 ACTB FAM3C CAMKK2 DPYSL2 NOTCH1 TCEB2 RTN3 COMMD6 SNRNP25 SSTR2 NUDT21 CAPZA2 TOMM7 NDRG3 BST2 TMOD2 CDC37 TMEM130 UQCRFS1 CHL1 PLCB1 NDUFAB1 MT2A SARAF PSD3 FASN TLR4 SDS HEPACAM CYCS PSAP PBXIP1 WSB2 UQCRQ CST3 CARTPT RAMP1 PAK1 SKP1 SUMO1 NECAB1 GAPDH ATP13A4 NEK6 GPR171 TUBB2B IFITM1 CCK EFEMP1 CDH13 TUBA4A KLC1 CADM2 EIF1AX C12ORF57 NDUFB4 ALDH1L1 ATHL1 B3GNT1 ATP6V0E2 TBC1D15 TUBB3 NGRN PCDHGA6 PCDHGA10 PCDHGA5 DNAJC21\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "astrocyte" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: SLC1A2 SLC1A3 PTGDS PCDHGA5 GPR37L1 GLUL CLU MT2A FTH1 CST3 MT1E SYTL2 ZNF385D RAB3B BSG DPYSL2 ACSS1 PSD3 PAQR8 GPR98 MT-CO3 CD58 C14ORF2 GHITM PAX6 CPE STON2 FGFR3 SLC6A1 PTPRZ1 GPM6A KLC1 PPP2R2B SPARCL1 EFR3A GJA1 DGKG NR1I3 PIEZO1 COX7A2L MAP2K4 UTRN HMP19 HSP90AA1 MT1X MT3 PSAP CALM1 CYB5R3 CCK STMND1 RPS3A SPTBN1 ENO1 PEG10 TMEM164 RPL23A TCEA2 TMEM63A ATP5B PDE3A CAMK2G GPR56 MTATP6P1 GRM3 EPS8 RPL21 COL11A1 TCEB2 LPAR6 GFAP NDRG2 UQCRC1 TSPAN12 CTSD DSTN CAPZA2 TSPAN7 CLIP3 GPRC5B ACACB MRAS CACNB1 ZCCHC24 FBLN1 CFL2 HSP90AB1 ATP1B2 SYPL1 PJA2 KIF21A PLTP METTL7A PLCB1 PFKP CYFIP2 MT-ND1 COL5A3 PPDPF CCDC85B DNAJC5 EZR VEGFA LIG1 RORB PPAP2B NIPA1 RPS15 KRAS UQCRC2 ATP6V0E2 PARP14 CADM2 MYBPC1 RASSF8 RTN4 HSPA2 GYG1 PCBP1 MAGED1 RPS28 MEGF10 SLC19A1 TRIM47 LMO3 IDH3A PPM1A PPP3CA CNTN1 SARAF NPTN RAB9A CLSTN1 GLIS3 GAPDH MT-ATP6 MTRNR2L1 YAP1 LCNL1 ZFAND5 PMP2 RPL35 CD99L2 TPD52 PEBP1 APOE C19ORF70 RP11-219A15.1 RNASEK-C17ORF49 MTND2P28 MT-ND2 IDS RPL13A AC244489.1\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "astrocyte" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: SLC1A2 SLC1A3 CLU GPR98 MT-CO3 SPARCL1 AQP4 PTPRZ1 METTL7A MT3 ITPR2 GPM6A COL5A3 PELI2 GJA1 NPTN CST3 PPAP2B ITM2C YAP1 SNAP25 MT-ND3 NDUFA11 EFNB1 MTRNR2L1 QDPR MEGF10 ATP1B2 RAB9A TUBB2B ZFAND4 LIMK1 OSMR QKI GPR56 RAB40B GLUL RAB3B CSRP1 NDUFB2 MAPK1 SPTBN1 ACTR10 RPS28 ATP1A2 PEA15 CPE VCAN SCD5 RORB ROBO3 NDUFB7 SDC4 ARL8A ID2 MT2A MYO10 LMO3 FOXO1 NPAS3 CRIM1 DLD HTRA1 ZBTB20 RAB5C USP5 SIRPA ATP5H PANX1 GFAP CAMK2G SYT11 NDRG2 PPP3CA MT-ATP6 AEBP1 FGFR3 FRMPD2 TMOD2 LGALS1 TTYH2 MT-ND4 ACTB RAB4A PLD3 CKB MAP4 F3 PADI2 AGT RPL41 CXCL14 TIMP3 HEPH FTH1 KCNJ10 LDB2 ACSS1 RPL23A SLC2A1 FTL COX7C ATP6AP2 GRIN2C PIK3R1 RP11-111M22.2 RASSF8 EMX2 RHEB SYTL2 ID4 WIF1 SYT1 TSC22D4 RP11-195F19.5 ALDOC ATP5G2 CHP1 MT-ND1 MTRNR2L6 MTND1P23 RPL36A PCDHAC1 PCDHA10 PCDHA4 PCDHA9 TBC1D15 DNAJC21 TF\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "astrocyte" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: SLC1A3 PTGDS ANGPTL4 SLC1A2 CLU HILPDA SOX9 PTN GFAP RAB3B VEGFA APOE PRNP ATP1A2 CST3 CPE MT-CO3 NAT8L GAPDH MT-ND4 PSAP ITM2C AQP4 ZIC1 TKT MT-ND3 TMSB4X MT-ND2 APP ARL6IP5 IDI1 CHI3L1 CALM2 HTRA1 FAM189A2 FTL OLFM2 PLOD2 SDC4 MYO10 CD59 TRIL SNAP25 COL5A3 SPARCL1 ATP1B1 SMAP2 ZBTB20 MAP1LC3A SCN3B WLS MTRNR2L1 SPATA13 PCDHA4 NOTCH1 GRIN2C MT-CO2 NDUFS5 OCIAD1 GABRG1 RAD23B UQCR11 OAZ1 HDAC1 NDFIP2 TMSB10 SLC6A1 GLIS3 DNAJB6 RPS19BP1 DYNLL1 BNIP3 METTL7A FIGN RHOB RPL23A DPYSL2 ETNPPL PTK2B ATP2A2 ATP6AP2 KCNMB4 PGK1 PFKP KCNK1 PDCD5 ENO2 CLTC PAPLN PIEZO1 JUN MYL6B GLUL PAQR8 LAMTOR5 CRYZ WSB2 MGST1 FKBP8 SH3BGRL3 CAP2 THY1 COPRS HPCA PCYT2 SERPINE2 ZCCHC24 HIC1 RPL31 ZNF365 SLCO1C1 CTSD HIF3A ATXN10 F3 C14ORF2 KCNAB2 SCD5 CHN1 MTX3 IDH3A TPI1 C14ORF132 PKM HSPB1 CDCA3 APLP2 MAP4 TOMM20 TRIM37 TEX2 GPR98 PPP2R4 ACOT7 SEPT4 NPTXR ALDOC MT-ND5 BAALC NDRG2 RPL10A KCNJ10 HSPE1 MAOB APLN RHBDD2 HOPX GADD45GIP1 SNN WASF1 RPL3 SYNPO VWA1 RPS2 SOCS3 DGUOK NEUROD2 VDAC1 ETFB ITGB5 PMEPA1 COX6A1 ARL8B CKB MT-CYB PTPRZ1 FTH1 GRM3 MT-CO1 PSMB7 LAGE3 FAM131C BCL6 PTMA S100A13 PMP2 CYP2J2 ACTG1 CCL2 CSDE1 NDUFA2 ARHGAP29 ATP5J2 MRVI1 PARM1 ACSS1 SUMO2 SPON1 GHITM RAN LINC00087 ATP1A3 JAKMIP1 ZFP36L2 FAIM2 CADM2 PRKCB SYT17 AGT NCBP2-AS2 C19ORF43 TERF2IP NEFL RPL11 HSPA8 SLC2A1 TMEM70 NFIA YBX3 GPR158 RPL38 FAM96B SUMO3 ATP6V0B GOT1 EIF4A2 CLDN10 RPS10 MRPL51 DIO2 NAP1L3 S100A16 RHOC FGFR3 CALM1 S100A1 CXCL14 WFS1 SCN1A WBP2 ZNF703 GNB1 SLC7A10 MTRNR2L6 KLC1 CFH PPIA PCDHGA6 PCDHGA5 PCDHGA10\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "astrocyte" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: ANGPTL4 F3 FAM189A2 SLC1A3 SLC1A2 CHI3L1 GADD45B GFAP MT1X VEGFA CLU PTGDS PFKP APOE CDKN1A PLOD2 CALM2 MT-ND3 SELM GLUL MRVI1 SERPINE2 GAPDH BCL6 ARPP19 CYP27A1 BSN HILPDA KIAA1755 GPR56 RPL32 CCL2 HSP90AB1 CPE SIGIRR CDC37 MTRNR2L1 MT3 CD63 ADM NEGR1 SNAP25 CAMK2D APOL6 OLFM2 TGFBI NDUFA13 WFS1 TMEM147 MT-CO3 ITPR2 BST2 FTL MT-CYB ACLY NDRG2 LDHB ZFP36L2 SIRPA AP2M1 TCEA2 PGK1 GPRC5B CLIP3 ZFP36 BNIP3 MLF2 ITGA6 TUBB2B VDAC2 MORF4L2 AQP4 CDK5R1 MT-CO2 RPL13 ZFP36L1 IFI35 UQCR11 ALDOC EZR CALM3 HEY1 LDOC1L ITM2B HSP90AA1 HSPE1 ITFG1 PKM MT1F S100A1 DPF3 RELN RFK RHOB LHX6 SSPN EBF4 POLR2M TTYH2 SERPINA3 UCHL1 CAPZA2 NDUFB4 THY1 PTPRZ1 ZCCHC24 SYT11 ITM2C MT2A CTC-575D19.1 IGFN1 PFN2 YWHAH ATP5E GPM6A MTX3 GNAQ SDC4 PCDHGA6 HEPH XAF1 ATP6V1G1 PCP4 MTPN PCDHGA10 WIF1 ATP1B2 STMN4 GPX1 RRAGA SLC7A2 EIF4A2 TUBA1B PON2 GRIN2C PCBP1 MAP4 DGKG SPARCL1 RNF181 ZCCHC17 LGALS3 RAB40B MAPRE2 MT1M CALM1 MTUS1 MTRNR2L6 BLOC1S1 RP11-20I23.1 ATP6V0C RPL41 SYTL2 DNAJC21 ZNF385D RAB3B TBC1D15\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "astrocyte" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: SLC1A3 SLC1A2 GPR56 PTGDS SYTL2 SERPINE2 KCNJ10 HOMER1 AP2M1 MT2A NCAM2 FGF2 RAB6B METTL7A ATP13A4 CALM2 APOE MT3 TNNT1 GABARAPL2 MT1X OR6D1P MAP2K2 STK24 RPS28 DNAJC4 OCIAD1 PGM2L1 SNAP25 MYBPC1 BIRC5 ARL8B GTF3A RP11-111M22.2 SYT17 PIEZO1 KIF21A PSMB7 CTSD PPAP2B HEPN1 ALDOC PBXIP1 HSP90AA1 TMEM144 TRIM47 GPM6A ACACB MT-CO1 VDAC1 CDC37 CFH CSRP1 ZBTB20 PEBP1 PAX6 ZFP36L1 AIMP2 ZFP36L2 SNRPN PXDC1 RORB ATP1A2 MAPRE2 MTRNR2L12 ALDH1L1 SDC4 ACTB PTPRZ1 GPR98 FGFR3 SPOCK1 SAP18 CALM1 GPR37L1 NDUFB8 CYCS MT-CO2 ID4 BSG FTH1 TBC1D15\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "astrocyte" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: SLC1A3 SLC1A2 GPR98 CPE CLU MT3 PTGDS GPR56 CST3 KCNJ10 SLCO1C1 PBXIP1 SLC7A2 FTL PTPRZ1 NDRG2 AQP4 FTH1 NFIA ARL6IP5 UQCR10 CHI3L1 FGFR3 SPARCL1 PDGFRB DPYSL2 PMP2 MT-ATP6 RANBP3L SAMM50 ACACB MTATP6P1 GRIN2C HGF PLCD1 PRNP TMA7 SDC2 EYA1 ANGPTL4 MT2A CHAC2 MLC1 LINC01085 MAP4 SNRNP25 SERF2 RPL39 ZBTB20 CDS1 PDE1A CHN1 TMEM258 FAT3 NKX2-2 HSPB1 CPNE8 LMO4 THSD7A TLR4 EXTL2 PCDHGA6 PAX6 ALCAM OXCT1 TMEM132C RHEB PHKG1 MAF BMPR1B CORO2B CTSD COX4I1 GUK1 MRPS28 FIGN RPS28 MEGF10 MT1E CRYAB NHP2L1 CNTNAP3 EIF1AX RPL26 MPZL3 CHRDL1 IL6R GJB6 LRRC69 PROCA1 RPL8 ATP1B2 ACTG1 MTRNR2L12 PPAP2B FAM134A LMO3 DPF3 ASAP1 MGST1 TSPAN7 ADAM33 TGOLN2 ITGB5 KAL1 MFN2 TCEB1 S1PR1 KLHL5 SERPINE2 ZFP36L1 ETNPPL PSMD12 MT-ND4 PFKP ATP2B2 FAM19A2 COX5B PLCB1 PALD1 SLC35B1 CYFIP2 UQCRC2 SLC25A48 SYT17 PPP3CB CA8 SLC39A12 SELENBP1 IGFBP7 GPM6A DIO2 GDI1 CKB SPTBN1 PAPLN POLR3H ZFHX4 RPL38 MAPK1 TRIL COL5A3 GHITM MIR6723 RP11-219A15.1 MT-CO1 ZNF385D ESCO2 RAB3B SYTL2 SUCLA2 GTF2H2C_2 TBC1D15\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "astrocyte" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: SLC1A2 RAB3B MT-CO1 CLU CKB NFIA CALM2 FGFR3 NDRG2 LCN12 PTGDS SCD5 NAT8L MT-ND4 MT2A LCNL1 SLCO1C1 NUDT4 COL5A3 SLC9A9 SPARCL1 LRP4 RPL31 HSPE1 MT1G SNAP25 ETNPPL AURKAIP1 RASSF8 HILPDA ARHGAP35 MAP4 MT-ND1 TLR4 AHNAK PLOD2 OLFM2 ZFAND5 RTN3 TMEM179B NPAS3 MORF4L2 ATP1A2 VEGFA CD24 PPP2R1A ETV5 RP11-111M22.2 RORB GOT1 STON2 PARP9 ZBTB20 HSPB1 HSP90AA1 TUBB2B FAIM2 RAB31 ARPC5L SLC7A2 ANGPTL4 COX7C TPI1 ARL2BP PPP1CB LDB2 RAB6A FGL1 BCAP31 LRFN3 DPF3 ATP2B2 CPE TALDO1 SLC24A2 SLC1A3 PCDH17 TMSB4X OAT MFGE8 RPS6 BMPR1B ATP5E PPP3CA HEPN1 GPR98 ENO2 HEPACAM COX6B1 HHATL FAM189A2 ITM2B ATP13A4 CLDN10 GOLIM4 IDS RPL21 SYTL2 ZNF385D\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "astrocyte" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: SLC1A2 CLU ZBTB20 GPR98 DPYSL2 NDRG2 HOMER1 MT3 GRAMD3 ATP1B2 APOE VAMP2 NFIA TRIB2 PTPRZ1 COL5A3 FTH1 SLC1A3 KIF1A SSPN CFH SYTL2 RAB3B ZNF385D HIF3A COL9A1 MLC1 SOX9 PRNP WLS MRPL55 CEND1 TTYH2 ATP6V0E2 ALDH1A1 SYT11 ACTG1 CAMK2G SDC4 TKT SLCO1C1 SH3BGRL3 GNAQ ATP2B2 TMX4 COX7C TMSB10 CKB VSNL1 UBA52 ID4 RPS28 LINC00116 PON2 GFAP FGFR3 CPE AC011043.1 GPM6A MTRNR2L12 FIGN PAPLN WDR47 ATP6V1G1 NAT8L HSP90AA1 MAP2K4 DKK3 HEPACAM PELI2 MTRNR2L1 LCNL1 MT-CO1 RAP1GDS1 PSAP TUBB2A ITM2C FBXW11 PTGES3 SPARCL1 RPL13 YWHAH ZFP36L1 GNB1 TMOD2 CTBP1 ZFAND5 VWA5A FAM111A COL11A1 MT-ND1 BANF1 MAP4 GOLIM4 EFEMP1 CXCL14 EGFR RAB31 SERPINE2 QKI HMGCR VPS35 NAPB WIF1 PKM MTRNR2L6 IDS GHITM RPL17-C18ORF32 RPL17 TBC1D15\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "astrocyte" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: SPARCL1 CLU SLC1A3 F3 GFAP GAPDH ANGPTL4 ZNF385D FTH1 MT1X SLC1A2 EIF1 RPL37A TOMM7 CALM1 GPRC5B PRKACB ACTB ZFAND5 AEBP1 AQP4 SOX9 MT2A RPL31 RPS28 GLUL WBP2 FAM189A2 NRGN FAM134A UBC GPR98 DYNLL1 GABARAPL2 RELL1 CPE ADM QKI GADD45B SNAP25 AKAP12 GEM MAPK1 ATP2B2 C4ORF3 TMSB4X RPS3A MT-CO1 SLC6A1 ATP1A2 PTMA GDI1 SLC9A9 PCBP1 TXNDC17 MASP1 S100A13 DCN COMMD6 PRNP ETV5 GPR37L1 VEGFA OSMR BCL6 GABRG1 AP3S1 COX6C ZIC1 PTGDS ACLY MFGE8 UCHL1 HEY1 PLEKHD1 CST3 DRAP1 PLSCR1 MT-ND2 RPL7 MT1M SPATA13 INPP5F PAMR1 CALM2 DHCR24 RPL41 PFKP EPDR1 CCL2 AGT PSAP TMEM117 PPAP2B RPS27A IFITM2 HSPE1 CPNE8 ATP5I FABP7 MT-ND1 RAB34 CD44 CRYAB CADM2 ACSS1 RPL18A MYEOV2 TMSB10 NCOA4 FGFR3 COX7C CD59 HSP90AA1 WWTR1 POMP COPE RPS26 PIP4K2A FNDC4 CSRP1 DPY19L1 ACTG1 COPS7A PTN LGALS3 DCTN3 GLIS3 MSMO1 ZBTB20 LDHB NAT8L STMN1 RAB1A JUN ZIC4 RPL32 GPM6A FTL HILPDA GPR56 SPTBN1 UQCRC1 DLC1 UBA52 SCD5 NFIA MT1G NPTN DPYSL2 NR1I3 PRUNE2 SSTR2 CFH CKLF ARL6IP1 RPL26 RPL13A TBC1D15 SYTL2 RAB3B\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "astrocyte" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: SLC1A3 SLC1A2 ZFHX4 PTPRZ1 PLCB1 PCDHGA10 MGST1 AGT ATP13A4 ATP1A2 CHN1 SPARCL1 RANBP3L GPR98 APOE ZFP36L1 CLU WIF1 OR6D1P TBC1D15 RP11-111M22.2 MT1F ZBTB20 QKI PSD3 USP5 RAB3B PRKD2 MBP HINT1 PPP2R2B AQP4 PRKACB SLC39A12 XAF1 NFIA MTRNR2L12 FKBP1A ID2 OXR1 RNF181 MT1G PJA2 CSRP1 COL11A1 HIF3A SLC6A1 MAPK1 NECAB1 MIEN1 HEPACAM SLC35B1 SLC14A1 MT-ND3 CST3 DKK3 ACTR1A MT-ND1 ITFG1 GPRC5B VAMP2 COMMD6 MRVI1 PTGDS CDK17 NKX2-2 TMTC4 IGFBP7 SYTL2 TOMM34 PCDH17 EIF4A2 EDNRB POLR2K GJB6 SH3BGRL2 DPYSL2 ACTB ERBB4 SDC4 MYBPC1 NACC2 VEGFA C11ORF65 NPAS3 LMBRD2 RORB RHEB TSC22D4 TUBB2B TRIB1 NAT8L RPL37A ITPR2 GLUL MTRNR2L8 KLC1 ALDOC MT-CO3 HDDC2 SERPINE2 ATXN10 HN1 MT-ATP6 PPP3CA RAMP1 GPM6A ACSS1 MT3 RLIM UCHL1 PRKAR1A NARS EPS15 GJA1 NDUFB4 RAB3IP TMOD2 PARP14 FGFR3 PPIA RP11-219A15.1 NR1I3 RPL21 DNAJC21\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "astrocyte" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: CHI3L1 SLC1A3 SNAP25 ANGPTL4 CLU GLUL ZFP36 SYT1 MAP1B MT-CO3 FTL PTGDS PGM2L1 CLTC GFAP WARS MT2A CALM3 F3 VDAC1 MT3 PLSCR1 CST3 UQCRB GHITM EPDR1 PFKP ARPC4 HMGCS1 RTN4 SCN3B OCIAD1 FTH1 PPIA HSP90AB1 COX5B C14ORF2 GJA1 BCL6 APOL6 COX6B1 STUB1 RAB34 RSL24D1 RELN CPE RGS16 BEX2 PCDHGA5 MRVI1 APLP1 PDGFRB ADM GPCPD1 ATP1B1 DNAJC21 TBC1D15 NDRG2 DNM3 SLCO1C1 VSNL1 RPL8 ATP6V0E2 KIF5A PREPL S100A1 ARHGDIA NDUFV1 MT-CYB PCMT1 CHN1 CD63 PRDM16 FAIM2 ITPR2 CALM2 SYT5 RHEB COX4I1 TUBA1A SAMD9L UBC NEUROD2 GUK1 HOMER1 SPP1 ATP6V1B2 PGAM1 ATP5G1 EIF4A2 ALDOC C12ORF57 STMN1 HMP19 LINC00086 UBE2E3 ITM2C C1ORF233 PAQR8 PREX2 C11ORF96 AEBP1 AP1S2 RLIM BAALC ATP2A2 ATP5I MORF4L1 UQCRQ NUDT4 SLC6A1 CKB FAM127A CNP MAPKAPK2 CDH8 FIBP PMEPA1 TM2D3 XAF1 HMGCR CAMK2G ANXA6 RPL13 SNCA SPOCK2 KLHL5 DPYSL2 ARL6IP1 PPP2CB CSDE1 NDUFA12 APP MGST1 CHMP4B SNN FGFR3 TUBB4A CLPTM1 ZBTB18 NAA38 OLFM1 RORB MT1E CLSTN1 GPM6A ATP6AP1 NDFIP1 MYL12B UHMK1 RP11-20I23.1 PEBP1 COL5A3 GRIN2C QKI PGRMC1 TXN HILPDA TSC22D1 CAPZB KIF1A YWHAH PI4KA NAT8L EPS8 TPRG1L MFGE8 BRK1 PNMA2 C1S ALKBH7 KLHDC3 C1QBP BCAS2 EIF1 SLC12A5 PSAP APOE CADM2 EDNRB SV2B NRCAM ELAVL4 DGUOK ATP6V0C RREB1 CAV1 CADM3 TUBB2B OAZ1 ACLY SPARCL1 SYT11 RPL10A BAD ENC1 CAMKK2 NGFRAP1 TGOLN2 EMX2 CHL1 SERPINI1 IDI1 KIFAP3 SNRPN KIAA1755 CCL2 TMEM155 HES1 NECAB1 SERP2 SYNJ1 EFR3A CYCS NRGN LDHB AZIN1 PRKAR1B FASN DYNLL2 FAM131B ATP5B ATP1B2 AP2M1 TMSB4X BHLHE40 OAT ATP5J2 DCLK1 PTMA PEX5L STMN2 COPE PTPRZ1 COPS7A MPI MLF2 NNAT USMG5 TSPAN7 ACTB RAB3B SYTL2 ALDOA MIF RPL36A HNRNPA1P40\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "astrocyte" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: SLC1A3 F3 SLC1A2 CLU FTH1 RPS15 MT2A GFAP GLUL PTGDS HILPDA ACTB NFIA MSMO1 ENO2 ATP13A4 HDDC2 RAB3B MT1E YBX3 SLC6A1 WFS1 CYCS AQP4 VIM QKI ZBTB20 CKB MT-ND4 GPRC5B TOPORS-AS1 PDP1 CPE RPL37A GPR98 USMG5 TSC22D1 ITPR2 TMA7 APOE VEGFA FTL DGUOK CNIH3 NDUFB2 CST3 BEX2 PEA15 TMEM132C GPR56 ATP6V1F C14ORF2 GNG5 TMSB4X GUK1 ZFHX4 SYT11 RPL38 PRNP ALDH5A1 RAMP1 CLIP3 RELL1 ATP5I ZBTB39 LAP3 FGFR3 PREPL FGF2 SEPT1 ANGPTL4 CD9 MT-CO3 MYEOV2 PRDX1 MAL TOLLIP GOLIM4 ATP1B1 NUAK1 ATPAF1 ZNF423 ENO1 S100A13 IFI35 BEX1 ZFP36L1 ATP1A2 PPP2R1A DPY19L1 RHOB MAGED1 PDCD5 DSTN MGST1 NDN UQCRC2 PRDX5 WBP2 GPM6A TUBB2B SLCO1C1 ZIC4 RPL32 RTN3 FAIM2 SOD1 GRIN2C PTPRZ1 SIRPA COPE LGALS1 HTRA1 CLIC4 EDF1 SCD5 ARF5 C16ORF13 RAB34 PKM S1PR1 FABP7 RPS28 OLFM2 GAPDH PRKCG ZCCHC24 PEG10 FBXL16 MRFAP1 ALDH1L1 ADAMTS1 CSRP1 EIF4G2 RAN SPATA13 SMAD6 COX7A2 TENM3 WBSCR17 LAGE3 UQCR11 ZFAND5 FRMD4B MRPS7 ETS1 YWHAG KIF3C ATP6V1G1 ATP1B2 WIF1 ATP2B2 PLEKHF1 AEBP1 GJA1 MT1M RPL41 ATP6V1B2 TMEM258 S100A16 SOX6 COX7C ITGA6 OST4 PLSCR1 MRPL33 PAX6 SNAP25 DPF3 EIF4A2 ACTG1 JUN ITM2C GPR37 NEFL C1ORF52 FAM69C PFDN4 SPARCL1 RPL11 MT1X FARSA ALDOA RPL21\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "astrocyte" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: ANGPTL4 SLC1A2 VEGFA MT3 PTGDS RAB3B GFAP F3 FTH1 ATP1B2 MT-ND2 CTU2 SLC1A3 HILPDA GJA1 PSAP CLU MT2A ARHGAP29 AGT VAMP2 GLUL HIF3A CTNND2 COX6C MT-CO1 ITM2C TMEM147 KIF21A GPM6A ZFP36 YWHAQ APP SIRPA SNX10 YBX3 ATP1A2 ATP5I CD63 SOX2 SPARCL1 ANAPC13 RPS15 ETFB UQCRH MTRNR2L12 WLS NFE2L1 CDC37 NCEH1 IFITM3 TEX2 FTL GPR98 MT-CO2 SLC25A48 PFKP TMOD2 RHOB PRDX2 NUDT21 RNF181 SNAP91 NAT8L ENO2 CPLX1 TMEM155 ATP6AP2 TMEM123 MT-CYB GABARAPL2 BMPR1B ENSA TMEM120A SERINC1 SDC4 PIEZO1 RTN3 SCD RPL41 SCD5 GNG2 SLC22A17 GABARAPL1 TMEM179B MT1X CHL1 NACC2 NCBP2-AS2 RPL23A ATP2B2 COA4 NEGR1 COX8A NRSN2 ENO1 LAP3 PGM2L1 UQCR10 EIF4A2 PNKD WBP2 COX4I1 CPE NFIA OSMR ID2 PSD3 ACLY AQP4 TMSB10 OST4 CYB5R3 NDUFA11 STOM SNCG GABRA5 PPP1CB CRIM1 TMEM144 SNAPC5 RPL15 MT-ND3 ARHGAP24 GPR37L1 C14ORF132 PBXIP1 CTSD PRKACB FXYD6 CLSTN1 AHNAK S100B LMBRD2 ARF1 PFDN4 QKI PTMA GAPDH PXDC1 SKP1 MT1E CA2 CKB SERPINA3 GABARAP ELMO1 HNRNPA1P40 RELN SNAP25 PCDHAC1 PCDHA10 PCDHA4 PCDHA9 SYTL2 TBC1D15 DNAJC21\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "astrocyte" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: ANGPTL4 SLC1A2 MT3 TBC1D15 GLUL QKI MT2A CLU CST3 CHI3L1 SYT1 F3 CCK MAP1B FTH1 ACACB GFAP MRVI1 ITM2C ZBTB20 APOE EDNRB GJA1 GRIN2C PTPRZ1 DPF3 DKK3 PSD3 SLC1A3 ATP1A2 ATP1B2 CKB ITGB4 PTGDS HEPACAM NR1I3 OLFM1 UQCRQ FAM127A PREPL ATP5J RREB1 CADM2 GRAMD3 NDFIP1 FKBP1A PKM AP2M1 GPR37L1 RPL37A IL6R MT-ND3 EIF5A2 RPL32 RAB34 RARRES2 PSMB5 MSMO1 PIN1 BSG HK1 VEGFA C10ORF54 CPE SPARCL1 SLC24A2 PSAP ISCU SNAP91 TMSB4X PEA15 NHP2L1 FAM69C EXTL2 SIRPA EML3 CCL2 AQP4 SLC22A17 HSPA8 METTL7A MAP1A PPP3CA YWHAZ SERPINE2 RHOB HES1 DDR2 KIFAP3 SCAND1 CSDE1 SEPT4 NDUFB1 MT-CYB ACSS1 ATP5J2 TSC22D4 C6ORF1 THBS4 SLC38A3 PPIA GAPDH SLC6A1 UQCR10 OPA1 SDC2 BHLHE40 ALDH1L1 TUBA1A DPYSL2 SCD RPS12 GPR98 PAPLN GOLIM4 ZFAND5 SLC7A10 ACTR10 MBP ENO2 FTL COL5A3 SKP1 OSMR CALM2 RAB4A RNF181 TSC22D1 S1PR1 MAOB UBL5 USP5 SDC4 DGUOK RAB31 SERINC1 GPM6A CXCL14 MYL6B MIF HNRNPA1P40 PLEKHD1 RPL17 UQCR11 RPL17-C18ORF32 IDS RPL13A PTCHD4\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "astrocyte" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: SLC1A2 MT-ND4 SLC1A3 MYO10 FTH1 MT-ATP6 NFIA GNAQ ZBTB20 TRIL GJA1 SYTL2 SAMD11 GLUL CALM2 ATP1A2 QKI MT1E RAB3B MT-ND3 KLHL12 RPS4X CHN1 SDC4 MT2A PAPLN MTRNR2L1 MT-ND2 SPON1 TLR4 BMPR1B RRM2B ETV1 CERS6 THY1 ATP1B2 NEK6 AKAP12 RAB11A FGFR3 ASAP2 CHRDL1 COX7C STOM PSAP MT-CYB VEGFA ARL4C PLD3 CEND1 SLC14A1 TERF2IP MAP1B NCEH1 YWHAB ETNPPL PPP1CB LRP4 MT-CO2 ARPC5L ATP6V0E2 MTATP6P1 RPL38 PCMT1 MT1G NPAS3 HSPA8 ATP13A4 TMEM150C CKB SLC6A12 ENO1 RP11-631M6.3 DPY19L1 DYNLL2 RELN WLS RP11-111M22.2 GJB6 NDRG2 SLC39A12 NUDT21 FJX1 NFE2L1 JUN WASL APOE NDUFB4 UBA52 HEPACAM RPS15 ATP5I INSIG1 INHBB RNF182 TMOD2 ARHGAP24 CRIM1 OCIAD1 CLU MT-CO3 BHLHE40 TOX CALM1 MTX3 IGFBP7 EIF1 MORF4L2 MT1F EPS15 TSPAN7 PAX6 ATP5J2 FAT1 AP3S1 MT3 HGF RRAGA MTRNR2L12 HMGCR TBC1D15 ATP1A3 RPL41 MTRNR2L6 GTF2H2C_2 ETFB PCDHGA10 PCDHGA6 PCDHGA5 TF\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "astrocyte" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: SLC1A2 NFIA CLU CPE SLC1A3 RAB3B MTRNR2L1 SPARCL1 ATP1B2 GLUL APOE GPR98 CHN1 NAT8L RANBP3L ITM2B PTGDS CFH SARAF COL5A3 GJA1 MT-CO2 ARHGAP29 ATP13A4 RPS27A UROD ANGPTL4 ATP5G2 FGF2 EZR GPM6A EFEMP1 ITM2C MLC1 FTL SNAP25 ITGB5 TNNT1 ATP6AP2 ZFP36L2 AGT TCN2 ADAM33 MT-ND5 MYO10 EPHB1 RARRES2 EDNRB DLC1 FGFR3 SLC25A6 MAP1A DNM3 CKB TPT1 AQP4 NACC2 CHMP4B GAPDH ACSS1 MGST3 RP11-111M22.2 ACTL6A GRIN1 RTN4 UROS YAF2 NRCAM PTN FAM198B MEGF10 HSP90AA1 STON2 MT2A TSC22D4 NCAM2 GOLIM4 MT-CO3 GDI1 F3 CADM2 HSPA2 QKI USMG5 LDHB SDC4 ZFHX4 SLC6A1 ATP5A1 WIF1 PRDX1 SPON1 ZFAND5 PRKAR1A SHARPIN NDRG2 ITGA6 ALDH1L1 SLC22A17 MTRNR2L6 TBC1D15 ZNF385D SYTL2\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "astrocyte" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: SLC1A2 SLC1A3 NDRG2 GLUL GPR98 CLU CST3 SERPINE2 NAT8L TBC1D15 ATP1B2 MT3 ZBTB20 ATP1A1 QKI TPT1 NFIA COL5A3 INHBB ITPR2 AQP4 SLC6A1 CPE PDK4 ACACB VEGFA RORB DNM3 RPS28 DNAJC6 TERF2IP PLCB1 ATP6V0E2 PLD3 MT-CO3 PET100 RTN3 ARF1 ENC1 OAZ1 MT1F CD59 SPRTN DSTN PDGFRB SPON1 RAMP1 ATP6V1A LAMTOR1 METTL7A TOMM20 FAT1 IGFBP7 SYT11 BAALC RPL8 MT-CO2 HK1 NAPB UBE2M ACTB RPL23A TGOLN2 KIF1A SOX9 NPAS3 LMBR1 SPARCL1 SLC25A6 BLOC1S1 C16ORF13 MT-ND2 VAMP2 MAPK1 SOX6 MT1X TXNIP ACSS1 ATP1A2 ITM2B MTRNR2L1 SLC7A10 FTH1 F3 HMGB1P35 RPS27A RPL39 RHOJ PSD3 PTPRZ1 GPR56 CALM1 TRIL CDS1 WLS CHADL PTGDS CALM2 EGFR NPTN SYTL2 FAM149B1 ZIC1 RTKN TALDO1 PPP1CB RAB3B IDS MTRNR2L6 RPL13A AC244489.1\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "astrocyte" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: SLC1A3 GLUL SPARCL1 SLC1A2 CLU F3 GPR98 GPRC5B AQP4 APOE FAM189A2 CHI3L1 VEGFA GPM6A ATP1B2 LGALS3 PTGDS HSPB1 RP11-111M22.2 MRVI1 INA HHATL SERPINE2 GPR56 SLC7A10 MT-ND4 ATP2A2 HILPDA CST3 MT-ND3 BMPR1B KIAA1755 S1PR1 SYPL1 NDUFS5 FASN NDRG4 CLSTN1 CXCL14 GADD45B MT1X HSP90AA1 NPAS3 CALM2 GFAP DPYSL2 PON2 LRRIQ1 REEP5 TBCB TUBB2B HOPX SNAP25 SMS SOCS3 PMP2 MDGA1 CTC-575D19.1 WFS1 ZFP36 EFR3A MAP1B EIF4A2 TRMT112 IFITM3 PTPRM PNKD RPS27A PPP2CA RTN4 FAM96B ARL6IP5 GPR37L1 MT-ND2 SNRPN ALDH1L1 CLDN10 MT-ATP6 AP2B1 HEPACAM RASSF8 IDI1 MEGF10 ZBTB20 MGST1 ACTG1 ATP1A3 RORB ATP1A2 JUND COL5A3 RHOJ TRIM47 CD44 NFE2L1 ASAP2 ARHGDIA ATP5J2 FARSA TERF2IP PTPRS NDP PREX2 OAZ1 MTCH1 PPP3CB AP3S1 ATXN10 TMEM120A VSNL1 PIK3R1 RPL15 ID4 ANGPTL4 RPL38 SKP1 OXR1 FAM149A ALDOC ATP5O BCL6 NAPB NCKAP5 OR6D1P TMSB10 CD59 TUBA1A ITGB4 SHC4 DYNLL1 SLC6A1 GRIN2C TUBA1B TOMM7 RHOB MAP1LC3A SYT17 UBC HOMER1 RPS3A RNF208 TUBB4B BNIP3 HDAC1 PTN RPL13A TUBB2A COX7C TMEM59L ARHGAP29 CSRP1 PPM1A SLC9A3R1 ADAMTS17 LRRC59 METTL7A TMSB4X HIGD1A AEBP1 NDFIP1 SLC35B1 SPTBN1 MLC1 SOD1 HEPH CYFIP2 PARP9 RTN3 CKB TUBA1C CPLX1 CAB39 NDUFC2 SCD5 FSTL5 SLIT1 CD9 ITM2C FGFR3 VAMP2 FTH1 GLIS3 ATP5H MORF4L2 HPCA C12ORF49 BSG ADORA1 SUMO2 MED31 MT2A UHMK1 MFGE8 MT1M CALM1 GJA1 INPP5F BCKDK CPE PRNP MLLT11 RPS28 BEX1 S100B GADD45GIP1 USMG5 MBP KCNA2 FTL QKI AIF1L FNDC4 FABP5 PLEKHG1 ATP5G3 SYTL2 RAB3B EPHB6 HBA1 ATP6V0C RPL6 RPL41 HBA2 B2M RP11-20I23.1 SERPINA3 ARF5\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "astrocyte" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: SLC1A3 SLC1A2 CST3 SYTL2 ZBTB20 FTH1 APOE NFIA F3 TBC1D15 CLU ANGPTL4 ATP1B2 MT2A GPR56 GOLIM4 QKI FTL HTRA1 PTN PTGDS SPARCL1 AQP4 GJA1 MTRNR2L1 GPR98 SLCO1C1 NDRG2 RORB NPAS3 LYN TSPAN7 LCNL1 NQO1 PPAP2B FGFR3 ITPR2 ZFHX4 AP3S1 HEPACAM ATP1A2 PAX6 CPE NTNG2 B3GNT1 PON2 FASN CKB MT3 VAMP2 KCNJ10 PREX2 MT1E FAM189A2 TMEM132C ZFP36L1 CLDN11 ALDOC CSDE1 MYO10 NR1I3 AGT NXPH1 MORF4L1 TSC22D4 PAPLN SUB1 MLC1 MYBPC1 DNAJB6 DLC1 UQCRC1 PTPRS CLSTN1 FAM198B GLUL CNTN1 RANBP3L MAP4 CTSD DPY19L1 PADI2 CLMN CRIM1 ITM2B RPS27A WASF1 GRAMD3 TLE4 SLC6A1 PDK4 TIMP3 MGST3 PAQR8 ARL1 PSMD12 STON2 YWHAH EDNRB RHOJ TMEM164 C9ORF24 MTCH1 PGK1 RPL39 GABRA1 GDE1 MT-ATP6 TSPYL1 RAB2A IFITM2 AES GAPDH PHYHIPL RELN ALDH1L1 GSTP1 PPP3CA SNAP25 COPE CNTNAP3 SLC24A3 HS3ST3A1 LRP4 HES1 MT-ND1 INHBB WIF1 MFGE8 AP1S2 RPS4X SERPINE2 GTF2H2C_2 TMEM63A NRCAM ETNPPL HGF HIF3A PRELID1 ATP5J2 MT-CO1 MT1F ZFAND5 ITM2C RPL23A CLTC RTN4 KIF21A PIK3R1 NDUFB1 CAMK2G BAALC PLOD2 SDC2 GSG1L SDC4 TMEM120A OAT TDRD7 TRIM47 SLC38A1 PLEKHG3 TMOD2 ATP5F1 TKT EXTL2 COL4A5 NDFIP1 BIRC5 RPS3A S100B KLC1 ID4 PRNP RARRES2 DACH1 CALM1 VEGFA EZR CSRP1 TTYH2 ETFB ACTG1 ITGB4 SOX9 BCL6 MTRNR2L6 PLEKHG1 ACSS1 RP11-20I23.1 CFH ATP6V0C IDS TUBB RPL21 RAB3B\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "astrocyte" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: SLC1A3 SLC1A2 CLU ZBTB20 ID2 PTGDS GPR98 COL5A3 CAMK2G NDRG2 SYT11 RNF144B HPSE2 AQP4 EID1 SLC39A10 CPE KLC1 CALM1 ATP1A2 DNAJC21 TBC1D15 SYTL2 RAB3B TMSB10 HTRA1 LMO3 RPL35 PMP2 COL6A1 ERBB4 MAST3 ROBO3 ZFAND5 MT1G ATP1B1 SCN1B ADAMTS9 FGFR3 RHOJ MYO10 PSAP UBE2V2 ITM2C PLCB1 NDFIP1 NAPB AGT PTN FTL GAPDH NDRG4 ALCAM TMOD2 RPS27A RHOB PREX2 UQCRB ATP5O PPAP2B SUMO2 FREM2 RPL15 CCDC115 ARL6IP1 SYN2 CKB MT-ATP6 SLC2A1 HEPH PAPLN SYT1 MT1M NFIA SERPINE2 SLC35B1 GPR37L1 SLC6A1 TRIB2 MDH1 MRVI1 WIF1 RTN1 CBX6 GRAMD3 CADM2 ZFHX4 VPS35 APOE NRF1 SYPL1 DYNLL1 KIF21A OLFM2 SLC14A1 AKAP12 COX7B MT-CO3 TUBA1A SPARCL1 ALDOC ADAM23 ID4 S1PR1 OXR1 TSPAN7 ATP1B2 MT-ND1 MTND1P23 GHITM\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "astrocyte" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: CLU SLC1A3 PTGDS HILPDA ANGPTL4 MT1X SLC1A2 GPR56 GFAP STOX1 ITM2C PTN PLSCR1 FAIM2 CD9 CST3 GADD45B MT-ND2 HMGCR SSTR2 RPL32 ECEL1 COPE FGFR3 PGK1 ATP5J2 ATP1B2 MGST1 ARL8B SERPINE2 SPARCL1 RGS16 RAB3B SYTL2 OR6D1P RAB6B EPS15 TSPAN7 DLC1 FNDC4 STK24 MRFAP1 LGALS3 ATP1A3 TANC1 GSK3A RPL35 EPAS1 STMND1 FAM189A2 TUBB2B CHI3L1 SUMO2 UQCR10 NDUFA4 GLUL ITPR2 C14ORF132 IFITM2 CAMK2G GJA1 NDUFB8 ELAVL2 GJB6 S100B CTSD PHYHIPL MT1E SOX2 MARCKSL1 DNAJC5 MTPN ARHGDIA TALDO1 MRPS28 GADD45GIP1 AC011043.1 RPL37A NFIA PSMB7 HDLBP METTL7A RPL8 TIMP3 DDR2 MT1M COQ10B TUBB4A IDH3A VEGFA RANBP3L PNMAL1 STUB1 PPP2R1A RABAC1 RTN1 PPIA RPL39 BSG PFKFB4 C2ORF80 RPL3 KAL1 SPON1 INSIG1 FAM131C ATP6AP2 UBB SYT11 CHGB PFN2 BIRC5 ATP6V1A ALDH1L1 SPRYD3 NHP2L1 HNRNPA1P40 MAL SIRPA BHLHE40 CYCS IFITM3 INPP5F NCKAP5 GRM3 NDUFA12 SELM SCN3B SLC24A2 APLP2 C14ORF2 SDS ZBTB20 NDRG4 XAF1 NDUFB11 MRVI1 CLDND1 ATP6V0B NRGN ATG101 HOPX CTBP1 SOCS3 BSCL2 PLEKHD1 GABARAP SERPINA3 PCDHA9 PCDHA4 PCDHA10 PCDHAC1\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "astrocyte" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: SLC1A2 MT1X SLC1A3 LCN12 HILPDA CADM2 QKI CPE SEMA3B C1S MT-ND2 OAZ1 PFKP MT3 TMSB10 SPARCL1 SPTBN1 GPRC5B SOCS3 ANGPTL4 LCNL1 SLCO1C1 ZNF385D RAB3B SYTL2 METTL7A ZMAT2 MTRNR2L1 GAPDH MORF4L2 PPP2R4 RPS12 ZFAND5 FGFR3 LINGO1 ACSS1 COX5B HOPX CST3 KIF5A RPL3 UQCRB HMGCS1 PADI2 CLPTM1 MRVI1 ZBTB18 GUK1 RGS4 GPR56 PHKG1 RPL26 GRAMD3 BHLHE40 PTGDS COPE RTN4 KLHDC3 PTPRZ1 ENO2 HSD17B6 PRKCE CDC37 CLU NDUFS6 BSG PREX2 DKK3 HEPH TRIP6 RPS27A RHOB MT-ND4 ALDOC MT-ND3 C12ORF49 PPP3CA WDR47 USMG5 APP ATP5A1 NACC2 TUBB3 AHNAK ARF1 NDUFA4 SLC35B1 SUCLA2 HGF INPP5F IFI35 MAST3 AQP4 LGALS3 EGFR EDNRB GPX4 PTN EIF4A2 GJA1 TMEM258 NDUFB5 HEY1 NARS CHST11 GRIN2A TSPAN7 ITM2B FTH1 VWA1 ATP1B2 WIF1 COX4I1 SAMM50 COL5A3 ZFP36L1 LDHB RPL10A GRINA ATP5J2 CDK17 ATP2B2 CAMK2D TMSB4X MRPL47 WLS SLC25A4 NDUFA13 TBC1D15 DNAJC21 SERPINA3 MTRNR2L6 RPL36A RP11-219A15.1 GTF2H2C_2 PCDHGA6\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "astrocyte" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: SLC1A2 FTL SLC1A3 PTGDS ATP1A2 GLUL KIF21A NDRG2 SPARCL1 GPR98 CIAPIN1 MT3 WIF1 ATP1B2 PRKAR1A CPE PRNP RTN4 TUBB2B ATP10A APOE PLTP GPM6A SNAP25 CHRDL1 PSD3 CLU SCD5 CFH CNP MOXD1 UBA1 MT-CYB NOTCH1 NCKAP5 PIK3R1 MT2A NRCAM DRAP1 AGT JUNB CLTA PGD ADM CD99L2 PLEKHG3 MTCH1 FGFR3 PON2 WBP2 AQP4 RPL39 ARX ACACB USMG5 NAA38 EZR HHATL CSRP1 HS6ST3 S100A1 LYN PSAP MTRNR2L12 SOX9 METTL7A PADI2 ATP6V1A SYT11 CNIH3 ZBTB18 ACTG1 ITPR2 RP11-111M22.2 C10ORF54 PI4KA SOX6 GJA1 ZBTB20 RHOJ FTH1 CAMK2G CST3 RAB6B IQSEC1 EIF4A2 MAF TRIL RPL13 GRIN2C SERPINE2 ALCAM CLDN10 HSP90AA1 APLN RNGTTP1 PTK2B HIF3A TPI1 SPRYD3 ZFP36L2 GPR56 STUB1 PGAM1 ISCA1 TMOD2 MLC1 ANGPTL4 IDS CHGB TBC1D15 DNAJC21 PLEKHD1 NR1I3 HNRNPA1P40 PCDHGA10 PCDHGA5 PCDHGA6\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "astrocyte" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: SLC1A2 SLC1A3 CHI3L1 MT2A MT1X F3 GFAP CLU MT-CO3 ANGPTL4 FTH1 MT-ND4 APOE PTGDS SPARCL1 VEGFA ZFP36 GPM6A SERPINE2 ATP1A2 ZFP36L1 HILPDA CST3 IDS FTL MTRNR2L1 TSC22D4 GJA1 BMPR1B UBC GADD45B COX6B1 KCNJ10 PRDX2 CDKN1A RHOB FGFR3 SCAMP5 TUBB2B SST MT-CO2 MBP SIGIRR CTSD DPYSL2 AQP4 ZBTB45 LMO4 NPAS3 TUBB2A CPE MT-ND2 ITM2C UBA52 RELN SYTL2 RAB3B ZNF385D RPS28 RPL13 CLSTN1 ID2 HMGCR TENM1 C6ORF1 POLR2L BST2 MORF4L1 ADM TSPAN7 NAP1L5 SELT RAB11A TSC22D1 COL6A1 CD59 MT-ATP6 ATP6V0B GRAMD3 ZFAND5 RTN1 GRIN2C ALDOC RAMP1 PTMA TERF2IP CLTC RPS5 SLC30A3 NDFIP1 NAPB CD63 GUK1 MT-CYB HSPA8 PLD3 MRPL20 CXCL14 GNG2 PTN MT-ND3 RRAGA DNER TUBA1A CCL2 IGFBP7 AURKAIP1 SLCO1C1 JUND ZFP36L2 ACSS1 BEX2 MGST1 VWA1 COX7C EIF4G2 USMG5 SLC40A1 MSMO1 SNRPN NKAIN4 RPL37A SKP1 NRGN LDHB ATP1B1 ATP6V1G1 SCN1B NDUFS6 IL33 LSM4 PSD3 PGAM1 FAM219A TRIL MTRNR2L6 AEBP1 RPL15 ATP5A1 CD58 CD44 GPR56 SOX9 JUN PFKP ITFG1 PPP2R4 PGRMC1 TUBA1B VSNL1 CSDE1 RPL3 TMEM164 HSPB8 NARS AXL FAM96B MAP1LC3B TMSB4X LMBRD2 RNF11 PEBP1 MT-ND1 YWHAZ MORF4L2 PHPT1 RTN3 SDS QKI GPRC5B NRCAM MAPK1 RPL39 PPAP2B HEPACAM ITM2B PPP3CA MTATP6P1 EML3 VAMP2 SOCS3 KIF21A STMN2 MTRNR2L12 CLIP3 RTN4 SLC39A12 ATP5I FKBP8 GPCPD1 GPR37 PTPRZ1 STXBP1 ACTG1 SPTBN1 GAPDH PBXIP1 RPS27A PLCB1 CNTN1 COX4I1 SGCD PIK3R1 OXR1 DDN CCK HSD17B6 ACTB ZBTB20 ATP2B4 OPA1 ALDH5A1 SLC38A1 ATP1A1 GNAQ UQCRC2 TRIM47 CHL1 MCM5 TF RPL17-C18ORF32 RP11-20I23.1 ATP6V0C RPL17 RPL41 RP11-111M22.2 PLEKHD1 HNRNPA1P40 RP11-219A15.1 TBC1D15 DNAJC21 ESCO2\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "astrocyte" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: F3 SLC1A2 CHI3L1 SLC1A3 GLUL ANGPTL4 PTPRZ1 ARFGAP2 CLU GPR98 SERPINE2 VWA1 SPARCL1 MT3 MYEOV2 NFIA PBXIP1 IGFBP7 IFITM3 PREPL PTGDS FTH1 AXL C19ORF53 TSC22D4 PSD3 NKAIN4 UBC TSC22D1 MLC1 ITGB5 GAPDH ATP6V0E2 PCYT2 NPAS3 MAP1LC3A SDC4 TUBB2B H2AFZ NRSN2 SYT11 EIF4G2 PCMT1 TSPAN7 ABCA8 CHL1 EIF1 WIF1 PLIN3 USMG5 TMA7 PTN ATP1A2 ATP5I CTNNA2 MAPRE2 DYNLRB1 RAB3A SELENBP1 CASP7 ATP6V1B2 RPS4X GPR37L1 MTCH1 AGA ZBTB20 HCN1 DSTN ATP5E CYCS CTSD APOE GNB1 CHN1 TMEM151A TRIM47 RPL32 HOPX HFM1 GJA1 TUBB4B CCK PMP2 TIMP2 FBXW11 ACTB MT-CYB NAPB SLC25A11 PRKCB NCDN HILPDA TCEAL2 HSP90AB1 UQCR11 AP2B1 RPS19BP1 PGK1 ATP1B2 FXYD6 RELN HTRA1 TSPYL4 BAI2 KIF21A HES1 PRDM16 STMN1 ADM AGT MT-ND4 HEPACAM SMAP2 TKT RHEB ALCAM PDE3A AKAP12 CPE CST3 NRCAM GJB6 PCDHA10 B2M CCL2 RAB40B TMEM144 COX4I1 NIPA1 ALDH1L1 PSMA7 RPL11 ASAP2 MTRNR2L12 SNAP25 PJA2 CYC1 UBB CHRDL1 NPTXR GOT1 NFE2L1 ZFP36L2 GPM6A MT-CO1 GPR56 MT-CO2 PLOD2 NDRG2 NEFL PSMC3 SERF2 RAMP1 TBC1D15 NR1I3 RPL7 RPL36A ALDOA RPS28 ESCO2 ZNF385D SYTL2 RAB3B\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "astrocyte" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: SLC1A2 SLC1A3 BMPR1B GPR37L1 FGFR3 NR1I3 DPYSL2 RPS15 ZFAND5 CLU GJB6 ITM2B MT-CO1 CKB CPE FTL BSG SIRPA NDRG2 ZBTB20 ZFP36L1 MT-ND4 ACTR10 WIF1 MLC1 RPL17 STXBP6 GPM6A RP11-111M22.2 CCDC124 HSPA4 APOE CRIM1 ATP1A1 ALDH1L1 TSPYL4 PLCB1 HILPDA PTPRS PREPL COX6C GRIN2C UHMK1 ATP5F1 COL11A1 IGFN1 ATP5B VEGFA WFS1 EDF1 CYBRD1 RPL17-C18ORF32 BRICD5 FAM189A2 HSP90AA1 MT-ATP6 B2M EZR S100B MTATP6P1 CST3 EDNRB MGST1 CTNNA2 BIRC5 MTCH1 MRAS MTRNR2L1 RANBP3L ID4 PFKP SLC25A5 CALM2 COL5A3 CTSD AURKAIP1 CLSTN1 CLTC PTGDS MT2A RAB5C EIF1AX ASAP2 GLUL PLTP NHP2 ATP6AP2 HIF3A UBE2F GPR98 ACSS1 UBA1 JUND RRAGA STON2 TUBB2B MT3 XAF1 ATP5I ITPR2 IDH3A CLTA HNRNPA1P40 SPCS2 MTRNR2L6 RPL3 LDHB SYTL2 ZNF385D RAB3B DNAJC21 GTF2H2C_2 PCDHGA6 PCDHGA10 PCDHGA5\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "astrocyte" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MT-ND4 PTGDS RPL37A CLU ANGPTL4 HILPDA RAB3B RPL13A SLC1A3 MT-ND1 RPL38 MT-CYB NACC2 GPR37L1 PPP3CA MT-ND2 CNR1 RAB34 CHI3L1 B3GNT1 MAP1A RGS16 LANCL1 NDUFB8 RP11-111M22.2 RTN1 YWHAH ARPP19 VEGFA MT-CO2 NPAS3 SERINC1 SYN2 MAP4 SNAP25 CD63 SPARCL1 SARAF SLC1A2 PSMA7 CTNNB1 SYNJ1 FIGN C12ORF49 KLC1 NCDN POLR2I WSCD1 TXNDC17 HSP90AA1 S100A6 MAP1B CLTC RPS15 PLD3 TEX2 FAM134A NPTX1 ZBTB20 CDCA8 FLOT2 YWHAG LYNX1 MT3 ATP5A1 SYNPO BEX1 YWHAB MRVI1 SDS MAP1LC3B SCAND1 PTPRZ1 SEPT4 OAT EIF1B ADAM23 C18ORF61 CBX6 NMNAT2 RHOB MGST1 TRIM47 FAT3 RPL7 SCD5 BSN PRKAR1A ITFG1 ACTB FAM111A ATP5I MT2A NPTXR ATP5G3 CHN1 MAP7D2 C19ORF70 PLSCR1 RAB3IP LMO3 RGS12 HK1 WBP2 BCAS2 STMND1 BCAP31 DEXI CACNB1 HPSE2 TUBB2B DPYSL2 MED10 C19ORF53 ATP1B1 YBX3 ATP5E LMBRD2 MT-ND4L PNMAL2 MAST3 CRIM1 ASAP2 H2AFZ PSAP PPDPF SEZ6L CPLX1 PRKAR1B MT-ND3 PTPRN ERBB4 GLUL RAMP1 CDC42SE2 PLOD2 ATP2B4 SOCS3 C14ORF2 PBXIP1 RPS19BP1 WARS SERINC3 NFIA ARHGAP35 ZFP36 HDLBP MTRNR2L1 CABP1 SLC25A11 CLPTM1 COPG1 ATP5O PSMB5 PCP4 EHD3 VSNL1 NCALD CCK GFAP WSB2 RAN GPM6A BHLHE40 RTN3 HNRNPH2 GAPDH ATP6V1B2 MT-CO3 MEGF10 TUBB4A TUSC2 FAM3C PRKACB FBXO2 RPS2 ZFP36L1 APOE TMSB10 UBB RPL32 HSPB1 CALM1 ATP5J2 IFITM2 GTF3A APLP1 TSPAN7 CDKN1A ATP5B S100A1 CALM2 C1ORF115 TLN2 SLC7A10 SCAMP5 EDF1 C1ORF56 DKK3 AKAP12 RPL21 CMAS CFL1 ENC1 QKI RPL13 NRGN RTN4 GPR98 HEPACAM NAT8L HMGCR RP11-20I23.1 SPCS2 RNASEK-C17ORF49 SERF2 NSF MTRNR2L6 ATP6V0C HNRNPA1P40 PCDHA9 PCDHAC1 PCDHA4 PCDHA10 TBC1D15\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "astrocyte" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: CLU ANGPTL4 PTGDS CHI3L1 SLC1A2 MT2A CCL2 CPE GLUL MT-ND2 TUBB2B GAPDH SERPINA3 SPARCL1 BEX4 NFIA F3 MT-CYB SLC1A3 CST3 ATP1B2 MT-ND4 ATP1A2 PKM LGALS3 GNAQ GADD45B FTL ZIC1 C1QL2 MZT1 FAM96B DRAP1 H2AFZ RPL10A FAT1 SOD1 JUNB BGN PLTP GFAP NDUFA4 CHCHD2 CORO1B CALM3 VAMP2 NKAIN4 TMEM164 CALM2 VEGFA MT1X SIRPA ARSJ DNM3 PREX2 NCEH1 WIF1 PIN1 TRPT1 TUBB2A EDF1 SEPT4 EMX2 GPR56 ATP6V0B ATP1B1 SDS GEM PIEZO1 FGFR3 COL5A3 C10ORF10 RPS4X EFHD2 COX5B TMA7 MYEOV2 SELT RAB31 BAD LCNL1 SYT1 RNF182 MAPKAPK2 C4ORF3 ITPR2 BCKDK SCOC EIF1 PARP4 IFITM3 PFKP MAPK1 PSMB5 SELENBP1 AGT COX6C TRIM47 TIMP2 YWHAZ ZFP36 HTRA1 ADAMTS9 TMEM160 PMP2 ATP6AP2 GPX1 C11ORF31 RPS2 OAT ATP5J2 COX6B1 MSMO1 CD9 CHMP4B PSAP ZNF385A MT-CO2 RPL41 PDLIM5 MAP1LC3A TSC22D4 DPYSL2 HSPE1 CCK NHP2 HMGCR EDNRB SAP18 CADM2 NDRG2 CTXN3 OPA1 UQCRQ HILPDA PINK1 PTN GPM6A TBC1D15 ZNF385D RAB3B SYTL2 NUDT4 RNASEK-C17ORF49 TF\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "astrocyte" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: SLC1A2 SLC1A3 CLU MT-CO1 CPE MT3 GLUL PLOD2 RP11-111M22.2 CST3 GPR98 CADM2 CKB METTL7A SERPINE2 CLPTM1 MT-ND2 HTRA1 ACSS1 HHATL MT-CO3 APOE CD63 SPARCL1 PTN FGFR3 PMP2 EFEMP1 SCD MTRNR2L8 PAMR1 WLS THSD7A LCNL1 AHNAK ITM2B STMN1 ZBTB18 PCDH17 STOM MFGE8 COL5A3 NFIA C1ORF233 AQP4 MT-ND1 PRNP DNM3 LCN12 CLDN10 ARL1 RGS12 WIF1 SCD5 OLFM2 NDRG2 ACP1 ASAP1 ALDH5A1 NCBP2-AS2 MTCH1 GJA1 ZBTB20 PSAP INHBA CYP2J2 PTMA S1PR1 AGT MAP7D1 FTH1 SNAP25 LRP1B MTRNR2L12 NPAS3 GAPDH ACACB ITM2C SUB1 ATP13A4 ALDH1L1 GRAMD3 SIRPA ITPR2 UBC SLC22A17 PAQR8 MT-ND4 TSPAN7 RTN4 SLC35B1 SYNGR1 SLC6A1 BEX4 CORO2B SOX21 THBS4 GNAQ YWHAB F3 CHL1 NBL1 DIO2 PRRX1 MAP4 TIMP3 MTG1 SLC14A1 ADORA1 ARFGAP2 ALDOA RPL13A RAB3B SYTL2 ZNF385D PCDHGA6 PCDHGA5 PCDHGA10 TBC1D15\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "astrocyte" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: SLC1A2 F3 ANGPTL4 CHI3L1 SLC1A3 GLUL RAB3B HILPDA FTH1 CLU MT2A PTGDS GPR37L1 MRVI1 CST3 NFIA MAP1B C1S THYN1 AEBP1 RTN3 MT-ND4 MT-CO3 ENO2 ITM2B SPARCL1 CPE GAPDH ITM2C NDRG2 ATP6V0E2 GFAP YBX3 MT-CYB PPIH MT-ND3 CADPS2 LDOC1 TCEAL2 COX4I1 SNAP25 C18ORF32 AGT ARL8B MFN2 RPL32 NDUFC1 C9ORF16 ATP6AP1 ACACB MLC1 PTPRS IGFN1 PFKP TMEM63A SCD NPTX1 FAM219A NDUFA2 STMN4 ATP1A2 METTL7A PITHD1 MTRNR2L12 RPS15 STRAP EML3 SLC25A5 GOLIM4 PPP3CA NEUROD6 CD63 GPR56 PKM RPL35 DYNLL1 SDC2 PFDN4 AKAP12 CALM3 PRKCB MT-CO1 ADORA2B TMEM130 HSPA8 HOMER1 MT1X SOD1 PHKG1 ATP1B2 RPL23A MT-ATP6 ALDH1L1 HLA-B SLC25A53 RPL31 SERPINI1 SRP54-AS1 OSMR HN1 IGFBP7 SSBP3 TMTC1 SERPINA3 RPL41 WARS PFN1 APLP2 CRIM1 MRPS21 PIEZO1 ATP6V1B2 EDNRB ATP6V1A COX7A2 WSB2 HPSE2 PAMR1 PSAP SLCO1C1 PSMA7 RAB34 D4S234E ACSS1 CDC37 AQP4 TSPO DKK3 PRDX5 RTN4 PPARGC1A SOX2 NGEF SLC6A1 NKAIN4 MAPRE2 PRDX2 TMSB10 ZFP36 ADM ADORA1 MT-ND1 CAPZB SHE TRIL TUSC2 PSMC5 DNAJC4 GJA1 CD59 MT3 CDK5R2 VWA1 TBC1D15 FAM3C TUBB3 RP11-219A15.1 TF\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "astrocyte" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: SLC1A2 SLC14A1 TLE4 GPR98 GJA1 FGFR3 MRVI1 RPL26 NFE2L1 SERPINE2 MT-ND4 SLC1A3 PIK3R1 GLUL SPTBN1 METTL7A MT2A PAQR8 MT3 LHFP NAT8L SPARCL1 MT-CO2 SOX2 RANBP3L CHCHD2 RPL8 HSP90AA1 MYBPC1 SLC9A6 TSPAN7 PMP2 NFIA GPM6A AQP4 SERF2 ATP1A2 EDNRB SPON1 RP11-111M22.2 RPL37A NDRG2 GRIN2C STRAP TRIL APOE RHOB TMEM120A SLC22A17 RPS27A ATP1B2 RELN CAMK2G KAL1 FTL LANCL1 SIRPA ZBTB20 SLC39A12 LMBRD2 VEGFA MT-ND1 KRT8P3 HTRA1 SLC39A10 RAB34 NPAS3 SDC4 MT1E ENO1 FGF2 SCD5 CADM3 CASP7 PPAP2B KIF21A TOMM7 BMPR1B SLC6A1 SLC12A5 WSB2 TSPYL1 PTGDS UTRN BSG CLDND2 HIF3A BAALC CORO2B RAB5C ACTG1 PFDN1 GFRA1 CALM2 PDK4 ACSS1 ID4 COL5A3 PREX2 ITPR2 ARHGAP24 ZFAND5 S1PR1 ZNF385D SYTL2 RAB3B TBC1D15\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "astrocyte" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: SLC1A3 SLC1A2 ZBTB20 RAB3B FTH1 LMO3 COL5A3 QKI SERPINE2 CLU ARFGAP2 MT2A MT3 HEPH NFIA RPL41 PHF11 GPR37L1 GLUL KIF1A PPAP2B CKB CPE SLC35B1 ITPR2 ATP1B2 MTRNR2L12 APOE PREPL MT-ND4 CFH ATP6V0E2 PLCB1 CHL1 SEPP1 RTN4 EPHB1 RP11-146N23.1 FTL AQP4 RHOB BHLHE40 AP2B1 GFAP ZFAND5 SNCB SKP1 RPL38 RPS2 CA11 GADD45GIP1 CCT5 WIF1 NCOA4 MTRNR2L6 STOX1 CRIM1 DDR2 GPR98 TM2D3 CRIP2 FGFR3 EIF4A2 TCEAL3 PTGDS EDNRB OLIG2 PDK4 PEBP1 GJA1 PKM MLC1 METTL7A CLSTN1 FKBP8 PGK1 SPARCL1 KLHL5 RAB4A LMBRD2 CA8 SH3BGRL2 RPS5 CLTC HMGB1P35 RORB ATP1A3 AEBP1 NDUFA2 KIAA1755 LPAR6 SRP14 RPS27A PCSK5 TRIM37 FOXO1 PEA15 MYO10 CALM1 TUBB2B DPF3 KIF21A PPP3CA DNAJC4 CHN1 PTPRZ1 MTRNR2L1 EFR3A HEPACAM TF CNTNAP3 MTND2P28 ALDOA MT-ND2 CALM2 TBC1D15\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "astrocyte" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: SLC1A3 CHI3L1 CLU SLC1A2 CST3 F3 MT-ATP6 GLUL RAB3B EIF4A2 ZNF385D DIO2 CPE PTPRZ1 MT2A SIGIRR MT-CO3 MT3 APOE SERPINE2 GAPDH MT-ND3 HEPACAM PON2 SERPINA3 UQCR10 FTH1 MYL6 RHOB ZFP36 CADM2 TRIM47 MTATP6P1 JUN TBC1D15 HBB TUBB4B COTL1 GABRA5 DNER GPR98 SEC61G SUMO1 GPR56 NME1 DNAJC21 ETV5 IL12A ATP6V0E2 EPS15 ATP1B2 GJA1 APLP2 SPARCL1 HPSE2 PSMB3 NDP MAPK1 NAT8L NDUFB4 XAF1 PDK4 PAMR1 NPAS3 AQP4 GPCPD1 MGST1 NHP2L1 YWHAB CD63 SELENBP1 AP1S1 MT-ND2 MT-CO2 PRKCB EIF1B LRP1B COMMD6 LDHB KIF21A SCN1B APOL6 PLTP MTRNR2L1 OSMR D4S234E NPTXR RHEB VDAC2 GNG3 CHN1 GDI1 MT1X TSC22D4 MYEOV2 PTGDS DDAH1 SRR MRAS FGFR3 PLOD2 ZBTB20 CX3CL1 SLC38A1 COX14 SPOCK2 SDC2 TIMP3 PI16 TUBB2B RAMP1 YBX3 LAP3 NDUFA2 ETV1 PSAP DYNLL1 GPM6A NRF1 NIPA1 CKB H2AFZ ALDH1L1 ANGPTL4 EFR3A NACC2 CXCL14 CALM2 PSD3 TMEM120A ITM2B UBC EDNRB ARPP19 METTL7A SLC9A1 MRPS7 VEGFA SOX6 FAM189A2 MTRNR2L6 RPL21 RNASEK-C17ORF49 RPS10 HNRNPA1P40\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "astrocyte" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: SLC1A2 MT1E SLC1A3 APOE MLC1 GLUL SPARCL1 MT1X MT2A WIF1 TBC1D15 UQCRC1 MTRNR2L12 F3 SIRPA DNER ZFHX4 PTGDS ITM2B GJA1 CST3 METTL7A FTH1 MT3 SLC6A1 ID4 FGFR3 ZNF385D RAB3B SYTL2 VAV3 MT-ND4 SERPINE2 SOX9 CKB ARHGAP29 KIF1A COPE SLC25A48 UBC CNP ZFAND5 RPL41 FTL COL5A3 MTRNR2L8 SLCO1C1 EDNRB CETN2 COX7B MTG1 RAB5C CLU ACOT7 TALDO1 MASP1 TXNIP HSP90AA1 CAPZB TIMP3 UTRN YJEFN3 GPR37L1 PEA15 LAMA2 MT-ND2 VEGFA PKM ADAMTS1 NDUFA4 TUBB4B CLTC CPE RTN4 LINC01296 LRRIQ3 ARL8A CCDC69 UBE2N NDRG2 RANBP3L RAB7A DIO2 GAPDH ATP6V1A CHI3L1 CHRDL1 AGT C1S CRIM1 H2AFZ CADM2 NCKAP5 RPL11 PPAP2B EMX2 HHATL PTPRZ1 NDRG4 AQP4 SCD5 PLD3 CTNNB1 GPR98 RHOJ ZBTB20 DYNLRB1 CYBRD1 PON2 PAQR8 RPL13A NFIA CFH ESCO2\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "astrocyte" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: SLC1A2 RAB3B SLC1A3 ATP1A2 MT3 PTGDS PTPRZ1 GPR98 PTN GLUL S100A13 ATP5I GJA1 SPARCL1 MT1X GPM6A ITPR2 CPE ZBTB20 ITM2C TSC22D1 ATP5E GNAQ FTL C10ORF54 AGT CALM2 CTSD FTH1 GABRG1 ACSS1 TLR4 NPAS3 CLU GJB6 SOX6 CYCS MT-CO2 CADM2 USMG5 QKI RPL35 ZIC2 ARHGAP24 F3 LMO3 RHOJ PREPL FAM219A ASAP2 ROBO3 LYPD6 ZFHX4 PDLIM5 PCDH17 TBC1D7 VAPB ARHGAP35 UBA1 RPL7 TMEM120A SLC14A1 PBXIP1 SEPW1 CLSTN1 MT1F COX7C TM2D3 SPTBN1 POU3F1 PIP4K2A DDAH1 SDC4 EDNRB ERBB4 CAMK2G DDR2 CETN2 ALDH1L1 C5ORF47 UBQLN2 SOX9 ATP5O S100B COX17 SLC2A1 MGST3 UQCRB MT-CO1 DPYSL2 COX7B MAGED2 ARL6IP5 HSPA8 GLIS3 RHEB CYP2J2 NAPB RPL21 MT1E RANBP3L INPP5F PRDX1 COX7A2L TMEM123 UQCR10 KLHL5 ZFP36L1 SLC39A12 ARF1 ACACB CHN1 COL5A3 SERF2 MTUS1 VAV3 C8ORF48 TBC1D15 FARSA SERPINE2 ISCU ASCL1 NDRG2 ITGA6 HIF3A CST3 ENO1 PAQR8 RRM2B SDC2 DKK3 MRPL33 KIAA1755 EPS15 KCNJ10 GFAP OST4 PRNP TMEM132C GRINA FOXO1 NREP NCEH1 TSPAN7 BIRC5 UBE2N CADM3 NDUFA4 CTNNA2 MRVI1 SIRPA CNTNAP3 PHYHIPL TMA7 MTPN WIF1 TPT1 PSD3 PLOD2 COX5A GOT1 ITGB5 WBP2 MAP1B LMBRD2 S1PR1 HNRNPA1P40 RPL3 MTATP6P1 NGRN MT-ATP6 RPS3A ARF5 CFH RPL41 RPS26 PCDHGA6 PCDHGA10 PCDHGA5 ARFGAP2 SYTL2\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "astrocyte" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: SLC1A3 SLC1A2 SERPINE2 ZBTB20 NFIA MT-ND4 GPM6A CPE MTRNR2L1 MT-CO2 C1S GLUL AGT UQCRB CD63 PTGDS PSAP GJB6 CLTC MT-ND3 PRDM16 PBXIP1 CREB5 CLU FTL GPRC5B DLC1 NDRG2 CKB GJA1 MT-ND2 CLDN10 MT2A SNAP25 GPR56 GLIS3 ID4 MT-CO3 B3GNT1 CSRP2 GNAQ PMP2 UBC ASAP1 TOMM7 ETNPPL PAQR8 ARFGAP2 TMEM63A GDI1 PGM2L1 TMEM164 UQCR11 COL5A3 HEY1 SH3RF1 GNG5 ASAP2 HSP90AA1 STXBP1 MT3 RPL23A ALDH1L1 FBXW11 SDC4 NDP MT-CO1 RHOJ PREX2 SSBP3 ATP5E DIO2 LGALS1 FAM69C RORB GPR37L1 MYL6 RPL12 PTN PLEKHG1 PCDH17 TMEM123 FGFR3 ATP1A2 SOX21 WIF1 TRIB2 PET100 MT-ND1 CNP RPL31 ETV1 AQP4 COL21A1 SEMA3B FIGN RHBDD2 DPYSL2 PCSK5 RAB6A QKI HIF3A ACTG1 PRKD2 DNM3 ACOT7 F3 PTPRZ1 TIMP3 CADM2 UQCRC2 ARL6IP1 UQCR10 HEPH ARPP19 ERBB4 UBE2E3 RANBP3L ITM2C ARHGAP42 PRNP NOTCH1 NKAIN4 SEPW1 TSC22D4 MAPKAPK2 LAMA4 ATP1B2 SKP1 RPL32 SCD5 RELN VDAC3 RP11-631M6.3 IDS RPL41 CFH GABARAP RPL21\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "astrocyte" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: RAB3B GLUL MT-CO2 SLC1A2 SLCO1C1 CLU PTGDS CKB COL5A3 GPR98 SLC1A3 NFIA METTL7A MT-CO3 DDR2 CTSD MT-ND2 BAG4 MT-ATP6 QKI TTYH2 ARFGAP2 SCD5 HIF3A PREX2 UQCRC2 BIRC5 LRP1B WLS VEGFA DKK3 SOX6 COMMD6 LIMK1 BOC MAPK1 COX7B UBC MT3 MT1E CHL1 ENKUR F3 BTBD1 TSPAN7 NDUFB2 NDRG2 TUBA1B FAM89A ATP1B2 PTPRS NPAS3 MAST3 MYO10 SPR C1ORF56 MAPKAPK2 RPL31 FGFR3 CALM2 TSC22D4 MRVI1 MT2A FGF2 HSPB1 HILPDA SLC22A17 TNS1 GABPB1 MRAS CERS6 RPL23A GFAP CLSTN1 C10ORF54 ATP1A3 PFKFB4 SNAP25 MT-ND4 MT-CO1 AQP4 ATHL1 PHB BCL6 KLHDC3 CACNB1 MT-CYB RPS26 RGCC OPCML RNA5-8SP6 PON2 GJA1 DNM3 ZBTB20 MLC1 MT-ND1 FAT1 DPYSL2 TOPORS-AS1 CSRP1 MT-ND3 NKX2-2 SLC39A12 TPT1 PSAP TUBB2B THY1 CTNND2 HSPA4 SERPINE2 S100B CFH SERPINA3 AC244489.1 EIF5A2 HNRNPA1P40 SYTL2 TF\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "astrocyte" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MT-ND4 MT-CO3 MT-ATP6 MT-CO2 MT-CO1 MTRNR2L12 MTRNR2L1 SYTL2 RAB3B SYT1 SNAP25 CHN1 MT-ND3 MT-CYB MAP1B MT-ND1 CALM1 COL6A1 NDUFB5 MT-ND2 INPP5F SYN1 GABRA1 PPP3R1 EPS15 SLC17A7 LMO4 ATP1B1 GAPDH MTATP6P1 NEGR1 DNAJC21 TF SLC1A2 PRDM8 UBE2E3 ARL8B KITLG TUBA1B PNMA2 RAB6B ATP5O SQLE PRKACB ANKRD18A FAIM2 SERINC3 GSTO1 TSPYL1 SPOCK1 TSPAN7 PPP3CA TSPYL4 BAALC PRNP TMSB10 PEBP1 MT-ND4L PCBP1 HSP90AA1 CAMKK2 CNTN1 SCN1A SPARCL1 BASP1 ACTB RPL12 VAMP2 STMN2 VSNL1 TMOD2 STXBP1 NDRG4 CPLX2 CADM2 SSBP3 DPYSL2 MAP1A NRGN UBQLN2 MGST3 NR1I3 MTRNR2L6 IDS ARFGAP2 OR6D1P SYT17 ROBO3 SNCG POLD1 ARHGAP35 SLC38A1 RPL39 CTBP1 RHEB MLLT11 OLFM1 SEMA3A RPL41 PRKAR1A PGK1 HSPA4 TMEM59L TAGLN3 COX8A PPP2CB MDH1 OCIAD1 CISD1 ONECUT2 PRKCE EPB41L3 IGFBP5 PIK3R1 NCEH1 DYNLL2 TUBD1 IPCEF1 SERINC1 GBE1 STK39 CALM2 FKBP4 SARAF PSD3 RGS4 FTL RAB6A TOMM20 YWHAB AP2S1 ALDOC GPM6A SPAG17 CAMK2D YWHAZ MTCH1 SGK223 RTN4R GUCY1B3 ANKRD20A11P PLCB1 SEPW1 SLC6A13 TSC22D4 GPR98 KIF21A CADPS2 SKP1 CLIP2 ATP5H SLC6A17 APLP1 GNB1 CD99L2 AZIN1 CPNE8 SAP18 TPI1 CAMK2G THY1 CAPZA2 APBB1 EIF4A2 RAB40B TPPP TENM1 HSP90AB1 EXTL2 PPIA PSAP ECM1 SNRPN TOMM7 CNR1 ETV5 CKB NAPA CDH7 BEX4 MTRNR2L8 AES PSMC1 ATP6V1C1 HCN1 UQCRH MBP EID1 PREPL PHYHIP C1ORF115 UBE2V2 RAP1GDS1 DDAH1 CTNND2 WSB2 COL24A1 OPA1 EIF1B RASGRF2 LMBRD2 BIRC5 FAM174A SLC7A8 ATP5B FTH1 RAB3IP APP PFN2 ATP6V0E2 SLC12A5 TCEB2 ARF3 GFRA1 CREG2 SYNPR TRAPPC1 NECAB1 C6ORF1 DNAJC5 PLEKHH2 RTN3 CBX6 YWHAG SIRPA PIP4K2A PRSS3 PPP1CB MTND2P28 PRUNE2 MAP7D2 NR2F2 ENC1 GLIS3 SLC22A17 OAZ1 LINC01296 KLC1 OPRK1 GFRA2 GNG5 ITPR2 ABHD14A MORF4L1 TUBA1A FXYD6 ADAM23 RPL13 FAM127A PRKAR1B SLC25A22 TALDO1 GDI1 NPTX1 ATP1A1 BNIP3 CFL2 TMEM150C ATXN10 AP2M1 RP11-111M22.2 RPL38 LGI3 GPX4 CAMK4 NPTN NWD2 MORF4L2 C1ORF52 IDI1 NEFL GAP43 UBE2M SLITRK1 EIF1 GRIN2A RPS27A RPL37A DSTN DISC1 BRINP3 PCSK1N CAP2 PTPRN HMP19 TPD52 NUAK1 ACTR6 TCEA2 APOL6 ATP6V1G1 PTCHD4 TSC22D1 KCNH5 CCDC124 RPL6 WBP2 NTNG2 SCN3B CALM3 ESYT1 PITHD1 YWHAH ENO2 C14ORF2 VDAC3 RPS2 CABP1 ARF1 FSCN1 RTN4 NELL2 NHP2 YBX3 SLC38A11 MAGED2 GNAQ TMEM35 PEF1 OAT UQCRC1 ELAVL2 COX4I1 PI4KA ATP5I ARL4C EIF4G2 LDHB RPS15 TRIM59 ATP6V0C RP11-20I23.1 RPL17-C18ORF32 JAKMIP1 RPL17 MIF TUBB AC244489.1 PCDHGA6 PCDHGA10 PCDHGA5 GTF2H2C_2 ZNF385D CFH\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "cortical layer 2-3 excitatory neuron A" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: SNAP25 MT-ND2 RAB3B MT-ATP6 RTN4 GRIN1 MT-CO2 GNAQ SERPINE2 ZNF385D MTRNR2L12 CCK PREPL ENC1 HPCA LMO3 MT-ND1 CALM1 GRIN2A MTRNR2L1 DNAJC21 RP11-219A15.1 CHN1 HSP90AA1 ATP6AP2 CHL1 MAP1A SYT4 SYT1 DKK3 RP11-111M22.2 MTATP6P1 SCN1B JUND PPP2R2C RTN3 MT-CYB PITHD1 NECAB1 SPARCL1 TOMM20 MT-ND4 MT-ND3 PSD3 HTR2A LPPR4 GNB1 KCNAB2 CABP1 CALM2 MT-CO1 HMP19 CNTN1 YWHAG TF PCMT1 PPP2CB ARPP19 TMA7 RNF212 CA11 PSMD12 TMSB4X ATP5E RPL7 THY1 NPTXR CERS6 ATP6V1A SV2B TMOD2 VPS35 AP2B1 RPL36A COX6C NDFIP2 MRFAP1 CNTROB HEY1 BSG FGF12 NEGR1 HMGCR PRKACB KIF3C PNMA1 PEX5L PTGES3 TSC22D1 FAM150B MAP4 ANO3 SPDL1 SCN1A PRKCB RPL39 MT-CO3 PPP2R2B MAPRE3 TPT1 NDUFB1 LRRIQ1 SNN CX3CL1 LIG1 BHLHE22 CRIP2 CAPZA2 C1ORF52 SYT11 CAMK2G DGKG ATP9A PEG10 SEZ6L CKB KCNA1 MBP TSC22D4 SYNJ1 RP11-195F19.5 RGS12 AURKAIP1 MTRNR2L6 CALM3 WARS AP2S1 RPL35 CCDC25 CACNA2D2 TUBB2A CADM2 ROBO2 HOMER1 CREB5 S100A6 COX4I1 MAP1B RNF152 LMO4 SHISA8 YWHAQ TMEM59L SLC12A5 NRGN MDH2 PDP1 JUN PTMA PGM2L1 WBP11 SDCBP PLD3 GAP43 ATP5C1 SNX3 CDK5R1 LMBR1 RPL37A SMIM13 NAPB TMEM65 FKBP1B ITM2B RPS15 TAGLN3 UBE2QL1 OCIAD1 EPHA6 SLC17A7 OPN3 APBB1 TENM3 WBP2 BEX4 PRNP KIFAP3 MAPRE2 MAP2K4 SCAMP5 MRPL33 ETS2 UBB MTRNR2L8 KCNV1 ATP1A1 ACTB PNKD FAM149B1 BCL6 LINGO1 FAM84A SOD1 SCG2 CDH8 GPM6A KLHDC3 ID2 APP RPL17 RPL17-C18ORF32 SERF2 ATP6V0C IDS RPS26 RPL17P50 RP11-20I23.1 GABARAP GTF2H2C_2 TUBB SYTL2\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "cortical layer 2-3 excitatory neuron A" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MT-CO1 MT-ND2 MTRNR2L12 RAB3B SYTL2 MT-CO2 MT-ND1 SNAP25 PIK3R1 MT-ND4 PRKCB ZFAND5 GPM6A CALM1 SERPINE2 NRCAM KCNAB2 SLC39A10 SYT1 RTN3 CREG2 ETV5 CKB PRKACB ATP1A3 TBCA RP11-219A15.1 RAB40B PSD3 RPL37A HNRNPA1P40 ATP1A1 LRRIQ1 KIF1A APLP2 PCDH19 MT-CO3 FTH1 MPP1 SMIM13 RP11-111M22.2 NCEH1 CDK5R1 MRFAP1 MARCKS CLIP3 BSN TUSC2 KCNA1 SNX17 DLD CDH7 CABP1 MARCKSL1 SERINC1 PPP3CA SLIT1 SCN1A SLC8A2 VSNL1 POU3F1 TMEM130 BAALC USP5 TENM3 PTPRN NGFRAP1 TUBD1 NFIA SERF2 RASGRF2 ARF1 BCL11B CHN1 CDHR1 PEBP1 OAZ1 PRKAR1B GNAQ BASP1 NDUFB1 PREPL SLC12A5 CADM2 FGF12 C18ORF32 IGSF21 MRPL55 PGRMC1 SYT4 ATP1B1 BIRC5 EIF1 KIF5A JAKMIP1 TSPYL1 PNMA2 ENC1 LGI3 NAP1L3 EGR3 MTRNR2L8 FBXW11 NDUFC2 EGR4 MTRNR2L1 MAPK1 CRKL NECAB1 ZBTB20 MRPL20 SLC17A7 MT-ATP6 MAST3 RAB27B PTPRS AP3S1 IQSEC1 GSK3A SPON2 ZNF804A RNF208 MT-ND3 APOE CHMP5 DPYSL2 EDIL3 NAT8L TMEM59L CDK17 APP FAIM2 ARL6IP5 SOD1 GSTP1 CAP2 ATP2A2 LZTS1 CDH8 UBE2N STAG3L5P RPS27A HSP90AB1 GRIN1 PNKD CDH22 PCBP1 MAP1B CACNG3 RAB6A RTN4 RPL31 MTRNR2L6 RELN\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "cortical layer 2-3 excitatory neuron A" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MT-CO1 MT-CO3 MT-CO2 SYTL2 MT-ND4 MT-ATP6 SNAP25 MT-ND2 MTRNR2L12 NECAB1 MT-ND3 RP11-111M22.2 RAB3B ATP1B1 ENC1 CHN1 GRIN1 RTN1 ATP2B2 EIF4A2 OXR1 PRNP VSNL1 CCDC25 MTRNR2L1 PGM2L1 CADM2 PIK3R1 YWHAG TSPAN7 MT-CYB TSC22D1 EIF1AX PNMA2 ATP1A1 LINC01296 FAT3 RASGRF2 CKB LMO4 LDB2 PPP3CA CERS6 CLU NAPB MBP INPP5F PSAP APLP1 ELAVL4 SYT1 SYT4 NRCAM TLN2 SLC22A17 KIF5A MT-ND1 RAB3A SLC12A5 GABRA1 NR1I3 RP11-219A15.1 MTRNR2L6 IDS CYB5R3 DCTN3 NDFIP1 TERF2IP PSD3 TSC22D4 CTNND2 HK1 PVRL1 MTND2P28 WDR47 MAOB TMA7 PRPS1 STXBP1 TUBA1B ARHGAP35 PSMD8 DHCR24 GDI1 TIMP2 DPF3 PLOD2 PPIA SCN1A MAPK1 AP2M1 GLRA3 PRDX2 MGST3 HSP90AB1 SLC25A4 RANBP1 EIF1 GDA FBXW11 PJA2 RPS5 CACNG3 RAB11A CCDC184 GAP43 MAPRE2 RPL19P18 PRKCB PLD3 RLIM RAB2A PRKACB MTPN SLC8A2 ERH TUBB4A CMAS NUDT4 PPARGC1A MGST1 CABP1 GUCY1B3 RPL38 SARAF HMP19 SYNJ1 PMEPA1 STK24 PTK2B GSK3A ENO2 HOMER1 ARHGDIG UQCRB MAGED2 SERPINI1 WASL PAFAH1B2 ANXA7 SLC6A13 CSDE1 BSN BEX4 SPOCK1 RPL13A JUN CDK5R1 SLC17A7 EGR1 ARPC5L CEND1 GPM6A PI4KA GAPDH KIF1A HOPX TMEM130 MTRNR2L8 BIRC5 DYNLL2 CAB39 SH3GL2 FAM84A AP1S1 ONECUT2 PTGES3 APLP2 YWHAB NEFL PREPL RAPGEF5 FAM19A1 DNM3 CDH8 VSTM2L SNCG BEX1 VAMP2 STMN1 SLC9A6 CA11 SYT13 NCALD LIMK1 NDUFV1 NDUFS5 RPS28 GNAQ PODXL PPP3CB EDIL3 RAB40B SERPINF1 PDE1C SSBP3 PINK1 SLC39A10 MTATP6P1 KCNC2 SPTBN1 CALM2 FBXO2 CLSTN1 AES HSP90AA1 RFK TTN PHYHIP NEFM SELT CAMKK2 LINGO1 ATP5H DDAH1 PLCB1 ZFAND5 PTPRN REPS2 SERINC3 FTH1 ATXN10 CLTC RELN CADM3 TUBA4A PEA15 ABCA8 CHMP4B DKK3 USP5 TSPYL1 CDH6 SERF2 BSCL2 RPL41 KRT17P6 RPL21 TBC1D15\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "cortical layer 2-3 excitatory neuron A" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MT-CO1 MT-CO2 MT-CO3 MT-ND4 MT-ATP6 ZNF385D MT-CYB MTRNR2L12 HNRNPA1P40 MAPK1 NECAB1 SYT1 RP11-219A15.1 PRKCB ATP1B1 MT-ND3 MTRNR2L8 ARFGAP2 TMX4 SNAP25 NGFRAP1 SLC39A10 PIK3R1 PRKCG MT-ND1 DCLK1 GRIN2A CA11 OLFM1 CKB BIRC5 CARTPT DPP6 RTN4 APLP1 VAMP1 EIF1AX ISCU HOMER1 KCNK1 MAGED1 MAP2K4 FAM84A CCK FTH1 MAP1B CFH MTATP6P1 COL6A1 RPL39 PEBP1 VDAC1 SPRYD3 NRGN VSTM2L LHFP HSPE1 BCL11B RTN3 CDH8 SLC38A11 GHITM COX7C TOMM70A NEFM SLC7A1 FNDC4 SMIM12 CLIP3 COX5B ELAVL4 ELAVL2 PDP1 EIF4A2 TOMM20 BASP1 FAM131B MBP CADM2 SDCBP RPS2 NMNAT2 ZNF365 MT-ND2 RAP2A RP11-111M22.2 MAP1LC3B EFR3A EDN1 NUDT4 GAP43 PHYHIP AP2B1 ATP6V1F MRAS OCIAD1 SUMO2 PHB MAPRE2 BAALC CDH24 CREG2 VAMP2 CLSTN1 PPP2CB ENC1 CACNA1H APLP2 KIF21A MT-ND4L ATP6V0E2 NEGR1 ATP5C1 UBC EPB41L3 KIF5A NCAM2 ARL8B BEND5 PSMA7 GPM6A GLRA3 TUBB2A FAIM2 MORF4L2 VSTM2A SELT HTR2A PTGES3 PPIA TPPP STXBP1 AZIN1 PPP2R2C SEPW1 HSP90AA1 COL24A1 WDR47 PGAM1 KCNV1 ETV5 CDK5R1 PRKACB C1ORF52 RAB4A PAM RAB11A KCNAB2 SCN1A NOS2 TMOD2 TLN2 MAP1A RAPGEF5 CALM1 SV2B STX1B RNF208 CHN1 RTN1 PPP3CA LSM4 AK5 LAMA4 PTK2B LAMTOR5 RPL36A RPS26 AC244489.1 RAB3B SYTL2 TBC1D15\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "cortical layer 2-3 excitatory neuron A" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MT-CO3 MT-CO1 MT-ATP6 PLP1 MT-ND3 MTRNR2L12 MT-CYB MT-ND1 CALM2 FTH1 MT-ND4 SYT1 MT-CO2 MT-ND2 DKK3 ANKRD20A11P OPN3 PSAP CHN1 COL24A1 MTRNR2L1 CYBRD1 YWHAZ ACTG1 H2AFZ NDUFAF2 SPOCK1 RAB3IP MTATP6P1 ERMN SLC17A7 CDK5R1 RPS28 PTGES3 MRPL20 MTRNR2L8 MAP1B TESPA1 RTN4 EIF1AX CLU TSC22D1 QDPR ITM2B PIP4K2A PPP3CA SCN3B RPL38 CALM1 KIF1A PRKACB CYFIP2 SSTR2 PRKCG THY1 MBP RP11-111M22.2 PLD3 OPCML PREPL RAB3B ZNF385D SYTL2 CFH IDS TF ESCO2 TMSB10 RP11-82O19.2 FAM3C SNAP25 NELL2 HOMER1 PAM NAT8L STX1A TCEB2 PINK1 ATP1B1 RSL24D1 EIF4A2 C10ORF90 RASGRF2 SERPINE2 NEGR1 ID2 PRNP GNAQ PSD3 CORO2B PCBP1 MYOM2 COL25A1 CCK RPS27A CHP1 LYNX1 UQCRC1 TPGS2 YWHAG TMEM130 PTPN20A OLFM1 PEBP1 ARL2BP DNM3 KIF21A HHIP SPARCL1 USMG5 PPP1R14A NPTN ATP1B2 SLC38A11 SCN1B C11ORF31 OPA1 FAM107B GSTP1 REEP2 VSNL1 DHCR24 TMEM65 HSPA2 BSN SCD RPL13 WASF1 TMSB4XP4 ANXA6 TMEM147 RPL11 PGM2L1 SCD5 CAMKK2 SLC31A2 TMEM14A ITGA11 PPIA GABRA1 GRIN2A TUBD1 TOLLIP PRKCB STMN2 RTN1 PIK3R1 NARS TUBB4A CLIP3 SLC24A2 TEX40 LRRIQ1 C14ORF132 JUNB DYNLL1 ASAP2 ZBTB20 DPY19L1 FIS1 LMO4 HS6ST3 HMGCR RPS5 SEMA3C EIF4G2 PKM NPM1P30 CNP CBX6 PCSK1 NRGN RAPGEF5 SLC6A12 NPTXR ANKRD18A ONECUT2 CAPZB HN1 STMN3 EIF1 GFAP ARL6IP5 TBR1 CYP26B1 COX7A2L ZBTB18 SULT4A1 UQCRB TMEM144 MOBP NECAB1 SLC6A17 CMPK1 HOPX TERF2IP PJA2 ZNF365 PRDX1 PTPRS GDI1 CFL1 VWA1 ATP5G1 DPYSL2 RPL37A SSBP3 HSP90AA1 NDN NGFRAP1 MAP4 CTNNA3 MT-ND4L SPOCK3 RAB3C HDLBP CCDC124 SLC39A10 GAPDH LL0XNC01-16G2.1 EPB41L3 LMBR1 NFIA RASSF8 AK5 ATP5G2 VAMP2 OAZ1 PET100 MACROD1 SERINC1 ERBB3 TGOLN2 RP11-20I23.1 ATP6V0C BSCL2 RPL3 SERF2 AC244489.1 PCDHA10 PCDHA9 PCDHAC1 PCDHA4 ARFGAP2 RP11-219A15.1\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "cortical layer 2-3 excitatory neuron A" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MT-CO1 SNAP25 ENC1 MT-ND1 MT-CO2 MT-ND2 MT-ND3 CKB MT-ND4 MT-ATP6 GPM6A WASF1 MT-CO3 RAB3B RP11-219A15.1 NECAB1 CNTN1 MAP1B RP11-111M22.2 PIK3R1 PEX5L SPARCL1 TF BASP1 SYT1 NFIA RPL38 CPLX2 UQCRB IDS HSP90AA1 PPP2R2C STXBP1 DKK3 RTN1 APBB1 ATP6V1B2 ATP2B4 AP2M1 CHN1 GRIN2A PRNP PSAP CAP2 RPL37A PRKACB ANXA7 RPS12 RAB6B SYN2 PRKCB CALM1 RTN4 PNMA2 RPL31 CLSTN1 SLITRK1 RPH3A CYP1B1 PDP1 DGUOK MAPK1 RGS4 PPP3CB MTRNR2L12 ATP5J2 CFH COX14 TEFM ENPP2 CALM3 CDK14 FKBP1A CALM2 USP5 ATP1A1 PTPN20A SYNGR3 SERPINE2 RPL3 INA HMP19 FAT3 CAMK4 ATP5A1 NAP1L2 IGSF21 RPS6 TSC22D1 PMEPA1 ACTR1A TPT1 LZTS1 HOMER1 TMOD2 SNAPC5 TOMM34 GNB1 KCNC2 GTF3A FAM84A STMN4 PHYHIP KCNAB2 RPL13 ACTB PEA15 ATP2B2 RPS10 SPOCK2 AES SLC17A7 MAP1LC3B TOMM22 PPP1CB HS6ST3 ARF5 CORO2B SCN3B C19ORF53 KIF5A GDI1 SCN1A SAMM50 TUBA4A TALDO1 APLP2 SUMO2 ENO1 KIF21A ELMO1 MPC2 ITM2C CDK5R2 PSD3 RAB11A VDAC3 CADM2 ATP4A C3ORF80 CSDE1 ARL6IP1 SLC22A17 VSNL1 MT-CYB SERP2 SPOCK3 NRCAM EIF1AX EIF4A2 SLC8A2 SLC38A11 NARS LMO4 TMSB4X MARCKS SNRPN ATP1A3 PPP2R1A CHMP4B MTATP6P1 POU3F1 LYSMD2 ARL1 TPD52 ATP5I SV2B PKM OLFM1 PCDHGA10 ARF3 CADM3 YWHAB HCN1 SPRN KRAS CYCS RRM2B GRINA TESPA1 LDB2 TLE4 ANKRD30A C1ORF52 SLC9A6 OAZ1 VAPB TSPAN7 PFDN1 LANCL1 MORF4L1 SARAF PGM2L1 NPTN NPTX1 SERINC3 UQCRH C19ORF10 GUK1 CTBP1 GNAQ ATP6V0D1 RAN PTPRS MLLT11 SYNJ1 HTR2A FAIM2 DCLK1 PRDX2 YWHAH LMO3 RTN3 ANKRD20A11P NGFRAP1 ZFP36L1 NEGR1 CAPZA2 NCDN CAMK2G DYNLL1 ATP1B1 AK5 RPS28 EGR1 PSMB5 SLC12A5 SCAMP5 TSPYL1 NIPA1 WBP2 PDE1A RP11-20I23.1 ATP6V0C RPL41 EPHB6 GABARAP RGS12 BSCL2 RPL36A TBC1D15\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "cortical layer 2-3 excitatory neuron A" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MT-CO1 TBC1D15 SNAP25 MT-ND1 MT-ND4 MT-ATP6 MT-CO3 MT-ND3 RAB3B SYTL2 MT-ND2 MT-CO2 OLFM1 MTATP6P1 SYT1 ZNF385D BSCL2 NRGN RP11-111M22.2 SARAF CHN1 PPP3CA RTN3 MT-CYB LMO4 ENC1 MT-ND5 SYN2 MTRNR2L12 MAP1B RPL12 HSP90AB1 OR6D1P APP IDS PPIA EIF4A2 PSD3 CABP1 MYO1B SCN1A TSPYL1 TMEM132D NRCAM EDF1 PCDH8 HMP19 HOMER1 PGM2L1 PNMAL1 ATP1A3 PSAP PCDHGA6 PIK3R1 CLU RTN1 PPP3CB FXYD6 PRKACB D4S234E OPA1 KLHDC3 MAP2K4 CCDC85B MTRNR2L8 PTK2B ATP6V1B2 RPL36A SUMO2 NAPB TMOD2 FTH1 NPTX1 GRIN2A TSPAN7 CFH PCDHAC1 NGRN ESCO2 NR1I3 NDUFB5 LRP1B KCNH5 TM6SF1 PNMA2 CPNE8 UQCRB TCEAL3 NECAB1 SERINC3 PEX5L NPTXR IL6R BTBD1 BEX1 PDP1 CD99L2 NGEF CDK17 DYNLT3 DYNLRB1 PTMA TMEM130 ATP5I SKAP2 ATP5G3 DPYSL2 TCEAL7 TUBB4B GDI1 OCIAD1 DCTN1 NDUFB11 BHLHE40 DSTN C16ORF93 SNCB EGR1 BEX4 CKB RPL41 RPL32 CAB39 ROBO2 TPT1 CREG2 LMO3 YJEFN3 ZCCHC17 ADCYAP1 RPS3AP12 UQCRC2 DNAJC4 UBA1 TTN PSMD2 TESPA1 FAM127A SLC12A5 ELMO1 ATP5B DNAJB6 SLC38A11 ETS2 GTF3A TKT ADCY10P1 SLC39A10 UQCRFS1 SRM CNRIP1 ATP1A2 INA NUAK1 RAB6B MTG1 STXBP1 GPR98 RPS6 ATP6V0E2 NGFRAP1 CBX6 SYNGR1 ENO1 MYL6B PMEPA1 DNAJC5 TRIM36 DYNLL2 ARPP19 MOBP YWHAH CNP TCEAL2 TM2D3 GAPDH MAGED1 PRNP STMN3 ATP9A SLC7A1 NDFIP1 ARF5 KLHL5 FGF12 QDPR BAALC KIF1A PLD3 RTN4 SYT11 NRN1 RAB11A STMN4 RPL23A GPR158 VSNL1 CHL1 COX7C CLSTN1 UBA52 MAOB TMEM155 MRPL15 ENO2 SLITRK1 COX5A HSPA4 RAPGEF5 PAFAH1B2 SLC22A17 HSP90AA1 PINK1 BRINP3 EIF4G2 ATP10A DCLK1 AP1S1 PNMAL2 CISD1 PRKCB GPCPD1 RPS12 MYEOV2 TPGS2 TMEM14A ECM1 ONECUT2 SPARCL1 LYNX1 SCN3B ATP5G1 DDN RPL13 TMTC4 GRIN1 PFKP PTPRN RPS28 NAA38 PJA2 SULT4A1 PLCB1 NDFIP2 KIT HMGB1P8 MFSD6 ENSA GABPB1 RILPL2 ZFAND5 LDB2 RPL37A TRIB2 PDGFRB DRAP1 CTU2 HMGCR TUBD1 RAB6A APBB1 SPON1 PTPRT SYT4 CTSD SLC6A17 TMEM150C FER1L4 THSD7A SDCBP PPM1A PHYHIP GOT1 NDRG4 PEBP1 PCDH17 PEPD SLC17A7 TOLLIP FAT3 UBC CLTC ARF1 BIRC5 PREPL TGOLN2 MMD WASF1 PNKD CALM3 MAP1LC3A SLC30A3 CPE HOPX SUMO1 CALM1 PGK1 TERF2IP NDUFA4L2 BTBD10 SLC19A3 COL12A1 MET LUZP2 LINC00087 RCAN2 JUND TRIM37 NDUFB8 MLF2 PPP2R2B SPTBN1 CADM3 SOD1 CAP2 MTX3 LDHB PTPN20A RPL3 RPL7 FKBP1A RPL13A CYB5R3 AC244489.1 ARFGAP2\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "cortical layer 2-3 excitatory neuron A" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: RAB3B MT-CO1 SNAP25 MT-CO3 MT-CO2 MT-CYB TBC1D15 RPL37A ENC1 RTN4 RP11-111M22.2 CHN1 PRNP RPL38 CALM1 MT-ND4 ARPP19 FAIM2 SYT1 CLU PREPL MT-ND1 MTRNR2L1 PPP3CA MT-ATP6 UQCRB SLC17A7 CNTNAP5 STXBP1 COX7B SERINC1 GPM6A DPP6 MT-ND3 ANO3 RPL12 MT-ND2 DKK3 RPL31 RPL26 COX7A1 TMEM130 GABRA1 PGM2L1 ESCO2 PRKCB TOMM20 ZMAT2 SPARCL1 MTATP6P1 ZBTB18 RPL32 HOMER1 TMTC1 LMO4 CIAPIN1 SIRPA MAPK1 NDUFA13 YWHAZ HSP90AA1 PACSIN1 ARL6IP5 DYNLRB1 TSPYL1 MAP1B LMO3 DNAJC5 STX1A TMSB10 YWHAB ARL6IP1 FBXO2 RPL10A RPL13A PRKCQ RPS12 PSD3 ISCU LANCL1 BAI2 RTN3 ATP6V0B RPS27A RPL35 NPTN HOPX PRKACB SYNJ1 RAPGEF5 SUB1 PTPRS ATP5A1 NECAB1 FAM19A2 SV2B IDS TUBD1 PLEKHD1 SLC12A5 CLTB JUN LAMTOR1 MTRNR2L6 KIFAP3 EPB41L3 EIF1 SPOCK2 GPR26 MRPL15 ATP6V1C1 FBXW11 MT-ND4L IGSF21 WASL HS6ST3 ABHD14A RPL13 RPL15 OLFM2 UCHL1 VPS35 ARL8A SMS PPP2R4 NHP2L1 NEFL FAM134A GRINA OCIAD1 SLC26A10 DPY19L1 UBA1 RPL11 UQCRH REEP2 HDLBP PTK2B OPN3 LRRIQ1 SELT ATP6AP1 RPS4X CD59 LYNX1 PEBP1 ZNF365 KLHDC3 SYN2 USMG5 TLN2 RPS15 MAP4 RPL7 NELL2 AK5 GUCY1B3 UBE2V2 CYFIP2 MYL6B THY1 FAT3 TMX4 ATP2A2 RAB2A ATP12A PPP2CB MYL6 CCK STMN1 RPL17 CLTC C11ORF31 TUBB4B SLC39A10 RPL17-C18ORF32 PTMA CNGB1 TSC22D1 KIF3C CREG2 RANBP1 HSP90AB1 SERPINE2 ATRN DNAJB9 PODXL MAGED1 AHNAK2 PNMA2 COL11A1 CKB NUAK1 BCAT1 EIF1B ZDHHC12 APLP1 TCEA2 RPS28 PDE1A CRIP2 FAM84A CNTN1 TPPP RGS4 ABRACL ATP5E INA STMN4 LMBRD2 MRPS21 AQP4 PPP1CB TBCA IGFBP5 RTN1 BAALC CYB5R3 LAMTOR2 DMKN OLFM1 CDH8 TALDO1 GLRA3 NAP1L2 YWHAH AMIGO2 GNAQ NARS YWHAG PHF11 TESPA1 CALM3 MORF4L2 NEGR1 PSAP HMP19 SLC25A22 PHYHIP GDA SYT17 GDI1 ZBBX SYT4 CPLX2 MTRNR2L12 PEX5L CCDC25 PPP3CB RASGRF2 ATP6V1A MPP1 NPTXR MAL2 DOCK10 B3GNT1 TM2D3 GRIN2A CORO2B RPS10 BASP1 PRKAR1A DNAJC6 TP53I11 ARF3 PRKCG KIAA1045 EIF4G2 WBSCR17 PSMC5 C19ORF70 ADCYAP1 CERS6 ATPAF1 MTND1P23 ATP6AP2 APLP2 SLC24A2 TXN PAFAH1B2 PELI3 CDK17 HK1 NRN1 SPTBN1 MAPRE2 COX4I1 TENM3 GSTO1 CAMK4 LPPR4 ASAP1 AP2M1 ARF1 ATP1A1 UHMK1 BEX1 FAM127A SOSTDC1 NWD2 RPL36A AC244489.1 NSF BSCL2 NUDT4 RPL41 RPL18A RPL3 GPR98 LAMA2 RAB1A PCDHGA10 PCDHGA5 PCDHGA6 SYTL2 ARFGAP2\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "cortical layer 2-3 excitatory neuron A" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: RAB3B RP11-111M22.2 SNAP25 TMSB4X SYTL2 CHN1 HNRNPA1P40 CABP1 TMSB10 EIF4A2 AC244489.1 UQCRB BIRC5 TBC1D15 ELAVL2 CALM1 UBC SYT1 PRUNE2 PTMA OR6D1P CALM2 DPYSL2 MRPS21 ENC1 NECAB1 TUBD1 PLEKHH2 ARFGAP2 NR1I3 CTU2 SCN1B APLP1 EPHB6 PTGES3 FGF12 DYNLL1 BAALC BRINP3 RAPGEF5 MAP2K4 SMS SYNGR1 GUK1 FTL UQCRQ NRCAM PACSIN1 RPL31 RPL37A RTN4 STX1A MANBAL TMTC1 HSP90AA1 PREPL PALD1 SARAF TSPYL1 RTN1 KLC1 UCHL1 PDE1A GRIN2A CSDE1 WASF1 VAMP2 PRKCB TRMT112 NRGN GABRA1 BEX1 MAPRE2 SULT4A1 RORB NELL2 GAPDH OST4 TCEA2 SKP1 CLIP3 TPI1 SRP14 MORF4L1 LGALS1 RPL26 MRFAP1 RPL38 PKM NDUFB11 DCLK1 ATP6V1E2 PIN1 C6ORF1 CADM2 HPRT1 ATP1A3 NCEH1 CTBP1 SNCA ACTB NRN1 PPP2R2B CASP7 ALDOC AAMDC MLF2 INA IDI1 MGST3 GNB1 OXR1 FAM149B1 MRPS28 SPRN NDUFB10 COL11A1 VDAC1 MYEOV2 NCALD MT-ND4 CDK5R1 COX5B YWHAG TMEM179B CLU THY1 PLCB1 CCDC69 ARF3 POLR2K CREB5 AES C19ORF43 C1ORF52 ALDH5A1 DEXI TPRG1L NDUFAF2 DNM3 ZNF365 HINT1 NEGR1 MTX3 TPPP RPL32 MAP1B SPRTN ATP6V0E2 PGK1 LINC00086 PGRMC1 NEFM GADD45GIP1 FAT3 CDH8 UQCR11 BASP1 SCN7A RPS5 ATP1A1 DNAJB9 SPTBN1 CNTN1 CD63 DCC BTNL9 GLRA3 ELAVL4 MAP1LC3A HSD17B14 ALKBH7 RAB3A UBE2V2 CAMK2N2 SNN MT-CO1 OAT FAM131B NAPA KIFAP3 HOMER1 PPM1A TMX4 SCD5 WSB2 PTPRS ENO2 SPOCK1 CKB CLSTN1 RAB2A PSMD12 EDF1 KCNAB2 RCAN2 RPL3 SH3GL2 CRYAB GPNMB LMO4 TBCA DYNLL2 FAM219A COX7C MAP7D2 PRKACB YAF2 ATP2B2 YWHAZ NTHL1 MRPL51 CTNND2 TDRD5 AP2M1 C9ORF16 APEX2 STMN3 CORO1B NAPB YWHAB PIK3R1 RPH3A DIRAS2 MRAP2 NDFIP1 SLC17A6 NDUFB8 SLC38A11 KCNMB4 DAB2 MORF4L2 HMGCR EIF1AX SNCB TMSB4XP4 SLC12A5 SERF2 MRPL20 DPY19L1 RGS12 PRDX1 TMEM258 SNRPN MAP7D1 PET100 MRPL33 MT3 PRKCG TUBA1B SYNGR3 PRKAR1A ASAP1 VAMP1 DYNLRB1 PGM2L1 THYN1 ATP1B1 TSC22D1 SCN3B SLC1A2 PPP2R2C DHCR24 RBX1 SEPW1 ATP5C1 RAB3C RPL39 MAGED2 TUBA1A STMN2 NEFL RABAC1 SH3BGRL3 GFRA2 CTNNA2 ADAM23 NDRG4 SLC6A17 PINK1 ACTR6 LMO3 WARS APP GPX4 ATP5H BAI2 OLFM1 APBB1 ONECUT2 CXXC4 TMEM59L SLC25A22 TERF2IP YDJC SLC39A10 CCK CA11 RAMP1 RTN3 TOLLIP CDC37 NGFRAP1 RPL12 NAT8L POLR2M SNCG NDUFA4 ATP5G1 BSCL2 RPL6 IDS RPL13P5 RPL36A RPL15 ATP6V1G2 RP11-219A15.1 CFH\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "cortical layer 2-3 excitatory neuron A" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: SYTL2 SNAP25 MT-CO1 MT-CO3 SYT1 ATP1B1 MT-CO2 MAP1B CALM1 RP11-111M22.2 RAB3B NECAB1 CABP1 CHN1 STMN2 ENC1 FTH1 SLC38A1 ELAVL4 SCN1A GAP43 ATP1A1 RTN3 RTN4 PPIA EPB41L3 TSC22D1 NRGN CALM3 TERF2IP ONECUT2 FKBP1A COL24A1 COL5A2 MTRNR2L12 TMEM59L TESPA1 PGAM1 VAMP2 MT-CYB CSDE1 SPARCL1 RAPGEF5 BIRC5 ARFGAP2 NR1I3 MLLT11 NAPB GPM6A THOC7 SNCB NRCAM AES EGR3 ATP5I CLIP3 TMSB4X MGST3 SCN3B CST3 CKB APOE DYNC1I1 KIF1A EIF4A2 RPL15 TMOD2 EIF1B PLCB1 TTN ENO2 RPL6 YWHAZ CHL1 PEX5L UQCRH PCBP1 TCEB2 GRIN2A NUAK1 CREG2 STMN3 FAM84A SSBP3 RNF11 RPL13 STAG3 MAP1LC3A CLU DYNLL1 YWHAG MORF4L2 CDC42SE2 LCNL1 ARL6IP1 TF DNAJC21 AC244489.1 SKP1 TUBD1 GTF2B BASP1 PRKCB HTR4 PIN1 HS6ST3 ATP5E RPL31 AP2M1 ATP6V1C2 DCC NDUFA5 PEBP1 HOPX SMIM13 MT-ND2 SV2B RPL7 THYN1 SCD5 KCNH5 RP11-119H12.1 ATP2A2 RNF208 C9ORF16 RREB1 DAB2 BEND5 CCDC183 SULT4A1 NPTXR RIT2 PRKAR1B UROS MFGE8 SYNPR PRKACB PPP3R1 WASL FAM127A ZFAND5 GPR158 NCALD PIP4K2A SYT11 CERS6 RAB11A C19ORF70 HTRA1 TLE4 ARF1 LSM4 RHEB NUDT21 TEFM NDUFB2 CAMKK2 MT-ND3 PTPRS MTRNR2L8 PGK1 KCNAB2 GNB1 RASGEF1B KCNA1 ATP5C1 TMA7 GABRA5 FAT3 CALM2 ETFB HCN1 PTGES3 IDI1 RELN MARCKS DNAJB9 SPCS2 RBX1 HTR1F RPS6 NDUFA4 SLC25A22 MTRNR2L1 TIMP1 UQCRFS1 TNNT2 PPP3CB FASN UBE2QL1 SLC25A4 NEFM LRP1B RAB1A PSMB5 S100A6 CADM3 NRF1 UQCRB WFS1 ATP6V1F KCNV1 YBEY GDI1 OXR1 TPT1 TMEM144 CPLX2 ACTB ATP6V1C1 CTNNA2 KLHL5 WBP2 DCLK1 TOPORS-AS1 DGAT2 YWHAB CYFIP2 COA4 NDRG4 PTPRM MYO16 YWHAH MAPRE2 CLTC KLC2 NTN4 OAZ1 GLIS3 HMP19 PCDHA4 CTNND2 NDUFV1 TMTC4 DYNLT3 UQCR10 NDRG3 VDAC3 SLC30A3 CNTROB HOMER1 C1ORF52 ARPP19 MT-ND4 FIGN GSTT1 ATP2B2 RPH3A CDKN2D RPS12 RORB ATP1A3 PTPRN GPR37 NME1 CAP2 TUBB4A MAPK1 DMTN VGF COX6B1 PSMA7 MAP1LC3B MED31 SYT13 BSN ATG101 SERPINI1 TKT CCK SUMO2 ARL2BP HSPE1 CRKL ARL4D OR6D1P NTNG1 RPL26 PNMA2 BCAT1 CPE WDR47 JUND NPAS3 DGUOK IQSEC1 TPD52 NDUFAF2 PLD3 ZBTB20 SLC24A2 AURKAIP1 FAIM2 RPL32 PET100 MT-ND1 PITPNA SCN1B MAP7D1 ASAP1 CDH22 SPOCK1 GNAQ PNMA1 TUBB4B ELAVL2 NWD2 SH3GL2 TCEA2 CAPZB SNX10 PDCD5 ARL6IP5 FTL CDK17 SLC25A6 OPRM1 CAMK2D GRIN1 DYNLL2 CAMK2G PGRMC1 PPP1R9B IPCEF1 FERMT1 RAB6B NFE2L1 NEUROD6 SSTR2 POMP ELMO1 SCAMP5 CA10 QKI PCSK1 MAPRE3 RANBP1 TUBA1B ADAM23 TGOLN2 C18ORF32 PGM2L1 ATP6V1G2 GABARAP NUDT4 PCDHGA6 RP11-20I23.1 IDS EPHA6 RPL23A NGRN ATP6V0C RNASEK-C17ORF49 TUBB CFH\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "cortical layer 2-3 excitatory neuron A" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: ZNF385D SNAP25 TBC1D15 HNRNPA1P40 CHN1 PSD3 ENC1 MT-CO2 FAT3 FAM84A ITM2B FTH1 PREPL PCDHA4 PEX5L NECAB1 CPE OLFM1 ESCO2 GGTLC2 CKB DPYSL2 YWHAB GNAQ SKP1 FAM19A1 CAMK4 PSAP COL21A1 MT-ND4 SYNPR IDS TMOD2 SKAP2 GABRA1 VSTM2L STXBP1 MAP2K1 DCLK1 PNMA2 TBR1 RAPGEF5 OR6D1P SNRPN LMO3 RAB40B KIF1A STMN4 OXR1 PAFAH1B2 TUBB2A RPL41 PI4KA CADM2 CREG2 INA RTN1 TSPYL1 CALM2 MT-CO1 SLITRK1 APP ATP6V1A BASP1 PTPRZ1 CALM1 NDRG4 CALM3 RAB3B NR1I3 HPRT1 RAP1GDS1 RTN4 COX17 ATP5A1 CAP2 NEGR1 TMSB10 NTNG1 PRSS3 TMEM151A MSMO1 THOC7 CD63 CA11 TNNT2 BEX4 TUBA1B FIBP NWD2 PSMA7 BTNL9 PACSIN1 ARL8B TMEM14A CCDC158 MAP1B NPAS3 INPP5F SH3GL2 TDRD5 CDK5R1 C6ORF141 DYNLL1 PPP3CB DYNC1I1 NDUFA13 PSMD12 NGFRAP1 MPP1 MT-ATP6 MRPS7 SYT1 PPP1R7 CLSTN2 ESYT1 ZBBX GLUL OPA1 SELT SARAF EID1 BAG4 FKBP1A SPOCK2 SLC9A6 PDP1 SMIM12 SCD5 SMAP2 GRINA TESPA1 PCDH8 ADAM23 CISD1 ATRN TSC22D1 TRHDE PRNP CLU RPL6 EPDR1 LINGO1 MAPK8IP2 FXYD6 TCEAL5 HOMER1 TMEM59L SPON1 KCNV1 ARL6IP1 RRM2B NHP2L1 PCDHGA5 OR2X1P LMO4 SERP2 SYT13 TPT1 EPB41L3 STK24 DLC1 MAP1A PFN2 HSP90AB1 MTRNR2L1 RP11-111M22.2 PPP3R1 NUAK1 OPRM1 COL24A1 TUBA1A BNIP3 GDI1 KCNH5 AP1S2 NCDN NDUFB2 CRIM1 OAZ1 LYNX1 SLC38A11 SSBP3 STMN1P1 RP11-147I3.1 STK39 RPS12 ELMO1 DSTN UQCRQ GRB14 DDN BRK1 VSTM2A STMN1 CERS6 PHYHIP PCDHGA10 SOX9 CHL1 COPS8 PNKD SPTBN1 WDR47 RPL38 BEND5 CLIP3 UCHL1 CSDE1 GPM6A PLCB1 NAPA TAGLN3 HS6ST3 ARPP19 MYBPC1 CCDC68 ATP5G1 RPL18A SMYD2 GOT2 TKT KITLG RPL37A ADCY10 TLE4 MAP2K4 ARF3 UQCRB CDC37 SCOC NUP37 ATP6AP1 POLR2L TOMM20 MT-ND5 MT-CO3 BCKDK RAP2A ETS2 SRD5A1 PKM C7ORF50 TENM3 C6ORF118 SERINC3 SH3BGRL2 MT-ND3 GAPDH SPDL1 CLTC MRPL47 RPL32 MTCH1 MPPED1 YWHAG ATP6V1F NDUFA2 JUN SNCA CLSTN1 GABARAPL1 CDH8 ATP2A2 PRKACB CCT5 ZNF174 YJEFN3 WBP2 ATP2B2 MT-ND2 UQCRC2 PPP2R1A SIRPA PNMA1 ITPR2 RPL17-C18ORF32 B2M RPL13A EPHB6 RPL17 MTRNR2L12 MTRNR2L8 RPS15 RPL21 AC244489.1\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "cortical layer 2-3 excitatory neuron A" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MT-ND4 MT-CO3 CHN1 SNAP25 MT-ND3 MT-CO1 MT-CO2 MT-ND2 MT-CYB MTRNR2L1 OR6D1P OXR1 SYTL2 ITPR2 TMSB4X MTRNR2L12 MT-ATP6 PEBP1 OCIAD1 PSMD2 PIK3R1 SYT1 LMO4 ACTB NECAB1 PPIA MAP1B YWHAZ CALM2 USMG5 HSP90AA1 RAB3B ATP9A RNF11 TMOD2 BASP1 TUBA1B GABRA1 PPA1 KCNA2 PFDN1 EPB41L3 NRGN KIF21A PPP2R1A SARAF TOLLIP STXBP1 CKB TPT1 HSP90AB1 OAZ1 SCN2B CPE SKP1 NRCAM LRP1B OPA1 PCDHGA5 SERPINI1 HOPX MORF4L2 CDH13 RP11-111M22.2 RPL35 SPARCL1 NDUFB1 EIF4A2 ARFGAP2 MTRNR2L6 RFC3 GUK1 SOD1 ATP1B1 ELAVL2 STK39 STRAP PGAM1 MGST1 PRKAR1A SCN4B MAP2K1 CNTNAP5 QDPR SLC22A17 INPP5F GLRA3 NELL1 DNER EID1 SKAP2 PTPRN DSTN MTND1P23 IPCEF1 BEX2 DNAJC4 CHI3L1 PDE1C APLP1 CSDE1 COX4I1 ATP5B VSTM2A TUBB4B SYT11 AES SLC9A6 VSTM2L ZBTB18 CHL1 SSBP3 PLP1 NDUFA2 SNX3 ELOVL7 GABARAPL1 CYB5R3 CARTPT CADM3 DNAJC5 TESPA1 DCTN1 LINC00087 TSC22D1 ARPP19 NMNAT2 PFKFB4 FAIM2 NAA38 ELMO1 KIF1A SSTR1 TRPV2 SLC17A6 UQCRH CADPS2 PDGFRB COPG1 SUB1 TSC22D4 CCDC25 ATP5A1 SNRPN GPX4 NUDT21 KCTD12 KLC1 WBP2 SUMO1 TBR1 MT-ND1 OLFM2 GPR98 C18ORF32 MDH1 PRKCE TSPAN7 GDI1 EGFL7 BAI2 RPL37A AP1S1 CSRP1 MAP7D2 PHKG1 SLC35B1 RPL11 YWHAH PJA2 PCDH17 NAP1L3 CLU CLTA HS6ST3 ADD2 C14ORF132 PSAP GUCY1B3 MAP4 DPYSL2 COL12A1 ATP6V1B2 FARSA TMSB10 SCN1A ENOPH1 EGR1 KCNF1 STMN3 SPTBN1 GPM6A CTNND2 SLC6A17 UBA52 DCTN3 NDFIP2 RP11-382N13.1 NDUFB3 CLIP3 NFE2L1 RPS27A RPL26 C1ORF56 PMEPA1 TNNT2 SEMA4G RAB40B PKM PHLDB2 NOS2 PTK2B MBP STUB1 FAM3C VSNL1 PHYHIP NRN1 DKK3 RPL13A YWHAB ENC1 DYNLL1 RPS4X PPP1CB RTN3 CACNB1 PRKCB RPL31 ELAVL4 RAB2A BNIP3 GRIN2A JUN MPPED1 RP11-452D12.1 NDUFB8 CABP1 SCN3B NARS ARL6IP1 NEGR1 SEZ6 VAMP2 NEFL PRNP NPTN RHEB AAMDC CRYM APP CALM1 ITM2B MLLT11 ERH ANKRD18A ATP6V1E1 CDK14 HMGCS1 COL5A2 YWHAQ TMEM65 RORB RELN TCEAL2 HTR2A CEND1 NME1 PHPT1 AK5 EPDR1 NDUFA5 KRT17P6 ALDOA RP11-219A15.1 B2M SERF2 IDS RPS26 RPL21 ERBB3\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "cortical layer 2-3 excitatory neuron A" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MT-CO3 MT-CO1 VSNL1 MT-CO2 MT-ND1 MT-ND4 GPM6A MT-ND3 SNAP25 TMA7 NECAB1 MT-ND2 SYTL2 RAB3B RP11-219A15.1 SLC12A5 MT-ATP6 MTRNR2L1 RPL37A TBC1D15 LPPR4 SYT1 C14ORF2 GDI1 UCHL1 CALM1 RTN3 DKK3 PPP3CA ATP2A2 COX7C PCDH8 CLU ANKRD20A11P RPS3A SLC30A3 RPL38 NELL2 EXTL2 PPP3R1 ARPP19 CDK5R1 NRCAM RTN4 ATP1A1 MTPN RPL41 RPL35 NR1I3 SEZ6 PGAM1 CLTC CLSTN1 VAMP1 TMEM230 NDRG4 STMN4 SERPINF1 MT3 TUBA1A RPS4X SYNPO RAB3A SYT11 SMAP2 CALM3 PSMC1 DMTN ID2 MTRNR2L6 CPLX2 C14ORF132 MTRNR2L12 SH3GL2 SLC1A2 HCN1 RPS26 YWHAG SEZ6L2 SYN1 IDS MGST3 ELAVL4 BEX1 NPTX1 ATP6AP2 ARPC5L SEZ6L PHYHIP LCN12 UBE2QL1 PGRMC1 QDPR EIF4A2 CDH13 TPD52 RPL31 CCK BRK1 CHN1 CRIP2 MRPL20 DHCR24 MT-CYB PRKCB RAB3C LAMP5 PRKCE RPS27A RRAGA NEGR1 ATP6V1C1 RPL11 TSC22D1 RHEB HHATL SYT4 TSPAN7 UQCRC1 REEP5 CAMKK2 MAPRE2 SNAP91 STMN3 SCN1A TOLLIP CISD1 FTH1 TMEM155 NCEH1 ACTB ETS2 LMO3 TMEM130 OLFM1 CAB39 PI4KA HDHD1 CYP1B1 TMSB10 STXBP1 SLITRK1 NPTXR SERINC1 DNAJC6 PDE1A DIRAS2 ITM2A PNMA1 PTMA GABRA1 PRNP GLRA3 GNB1 DNAJB6 PTGES3 ATP5J RPL23A CDK17 INSIG1 PTK2B STRAP MT-ND4L ZFAND5 WDR47 RPS6 SPARCL1 JUND OR6D1P NDUFAB1 SLC6A17 MYO1B REEP2 TUBB2B RPL10A ATP2B2 CDC42SE2 PCDHGA5 PRKACB WASF1 CADM2 EPB41L3 POLR3H EPHB6 LYNX1 CNTN1 CCDC115 GLO1 RPL7 NEFL PPP2CB MTATP6P1 USMG5 MARCH10 NUDT4 ATP6V0C HAPLN4 NGRN RPS15 RPL21 RP11-20I23.1 GABARAP NSF RPL36A PCDHA4 PCDHAC1 PCDHA10 PCDHA9 ZNF385D\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "cortical layer 2-3 excitatory neuron A" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: RAB3B CALM2 NECAB1 RPL31 SNAP25 ENC1 MT-ND2 MT-ND4 NDRG4 TUBA1B PRNP SEPW1 CALM1 TMSB10 MT-CO3 NR1I3 SARAF RPL38 YWHAB RPL32 TUBD1 TMEM59L CALM3 MTRNR2L12 PPP3CA FBXL16 RPL23A RPL41 MT-CO1 SYNJ1 SYT1 MT-ATP6 MAP1B CFH MT-CYB COX6A1 PPP3R1 ATP1B1 RPL37A PPM1A BSCL2 TPI1 RAB40B TF C14ORF132 LMBR1 VEGFA ATP2A2 PRKCG TLE4 STMN3 NGEF UQCRC2 COL6A1 DDR2 GPR98 TOMM20 SCN1A GRIN2A PPP2R2B NPTX1 RAPGEF5 RPL17-C18ORF32 PSMD12 RPS4X MLF2 CTNND2 ATP5I SLC6A17 DCTN3 XX-CR54.1 MYEOV2 C1ORF56 SRP14 RAP2A MAPRE3 KCNAB3 NDUFB5 FER1L4 LMO4 HINT1 TBR1 CDS1 RAB4A ADAM23 SEMA3C HSPA4 GAPDHP33 GPM6A NPTN FKBP1A PHYHIPL TPT1 UBB STMN2 ATP6AP1 KLHDC3 FAM19A1 ATP5B TPPP NCEH1 CHN1 RPL26 ATP6V0E2 NHP2L1 PET100 CA11 SCD5 RTN1 RPL6 AAMDC MDH1 NPTX2 UCHL1 NCDN DCTN1 BRK1 TSPAN7 BNIP3 ZBBX SH3GL2 SMS PREPL RTN4 RPL17 NUAK1 RAP1GAP2 RAB3A FTL DKK3 NIPA1 MTATP6P1 BAALC APLP1 RPL11 TERF2IP SYT4 RTN3 DYNLRB1 ATP9A PPP1CB WDR47 AC073264.6 KLHL12 CDK5R1 TUBA4A SPOCK1 BIRC5 POLR2K SMIM13 UQCRB FAM127A STMN1 ENO2 RP11-111M22.2 BEX1 NDUFS5 LAMTOR5 CAB39 NDUFB1 GUCY1A3 MAP2K1 NRSN2 SLC24A2 RPS12 PGM2L1 SSTR2 COL24A1 SERPINI1 NDFIP2 TRIB2 UBE2E3 KCNAB2 MYRIP YWHAG RGS12 CHMP5 CISD1 YWHAH TMOD2 ETFB PRKACB BRICD5 PRKCB ATP6V0D1 ATP5E SLC9A6 COL5A3 LGALS1 TCEB1 TCEAL5 PKM RAB6A PPIA ANKRD20A11P SERINC3 RORB HSP90AB1 NUDT4 RNASEK-C17ORF49 SERF2 RPL7 ARFGAP2 SYTL2\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "cortical layer 2-3 excitatory neuron A" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: SNAP25 MT-ND1 MT-CO3 MT-CO1 TMSB4X PDE1A SYT1 MT-ND3 CALM1 UQCRB TESPA1 TBC1D15 TSPYL1 TMSB10 SPARCL1 PSD3 MTRNR2L1 REEP2 RTN4 IDS MT-ND4 TERF2IP RPL23A SERINC3 COX7C CEND1 CDK5R1 RP11-219A15.1 RP11-111M22.2 RPL41 WASF1 FAT3 MAP1B GNAQ THY1 PKM OLFM1 NDUFB1 EPS15 MTRNR2L12 PRKCB ATP1B1 LMO4 HOPX GRM3 STMN1 SERPINF1 NAPB TOMM7 LMBRD2 PTMA MTATP6P1 NPTX2 NDFIP1 MT-ATP6 DCLK1 TUBA4A CNTN1 NDFIP2 C3ORF80 RGS12 PCDHA4 PEA15 SSBP3 NEUROD1 SLC39A10 USP5 NCEH1 SCN1A RHBDD2 EPB41L3 KCNK1 RPS27A SUMO1 TAGLN3 C14ORF132 ARPP19 SMIM13 HCN1 RGS4 GABRA1 ANO3 SLC25A5 GPM6A HNRNPH2 ECM1 IGFBP5 PVRL1 CDKN2D SYNGR1 TMX4 APP ACTB GLRA3 SCG2 TPD52 STMN2 VPS35 TUBB4A ELAVL4 NAT8L ARL6IP1 PCDHGA10 CHN1 TM2D3 SUMO2 HS6ST2 PPP1CB NAPA SRP9 UBC EFHD2 RAPGEF5 OXCT1 C1ORF115 ANKRD20A11P PRDX3 PCMT1 PSMC3 CADM3 NGEF SERPINE2 RASGRF2 PNKD OXR1 HMP19 C19ORF53 CHL1 OCIAD1 HNRNPA1P40 RAB3B SYTL2 ZNF385D ESCO2 MTRNR2L6 C11ORF31 RPL36A CYB5R3 ARFGAP2\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "cortical layer 2-3 excitatory neuron A" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: SYTL2 SNAP25 CALM2 ITPR2 RPL37A LINC01296 LRRIQ1 CALM1 NAPB PRKACB DYNLL1 MAPK1 CNR1 PTCHD4 TBR1 TSPYL1 GRIN2A TOMM34 BEX1 SERPINE2 HOMER1 GDA ATP6V0B NDRG3 EPDR1 SYT1 FXYD6 COX7C TRHDE HS6ST3 TMEM70 TCEAL5 HSPA4 LIN9 SLC17A6 NEFL FAM84A ENO2 PPP2R1A GPM6A PNKD NOP10 NCDN LMO3 APLP2 PPP2R2C KIF5A GPR88 AZIN1 THY1 PEX5L SCOC LMBRD2 PCMT1 ENC1 PEBP1 PSMD12 NELL2 PPIA LYSMD2 SERPINI1 NRCAM ATP5J YWHAG TPI1 FOXQ1 EPHA6 CCT5 PLCB1 PKM MAPRE2 COX7A2L C1ORF115 YWHAB MT-ATP6 DGKG NGEF PPP3CA SLC39A10 RPL38 CHN1 HSPBP1 COPRS GPATCH4 EIF4A2 COX6A1 NELL1 BEX4 COX7A1 GAPDH CBLN4 CPLX3 IDS EPB41L3 TAGLN3 PDE1C NECAB1 RPS27A CFH RPL13A RAB6A RP11-219A15.1 AC244489.1\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "cortical layer 2-3 excitatory neuron A" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: RTN4 MT-CO1 RAB3B MT-CO3 NDFIP1 MT-ND4 CALM2 SNAP25 MAP1B CHL1 RPS27A PSD3 SCN1A GPM6A YWHAG PRNP MT-CO2 RPL37A SYT1 PLCB1 YWHAZ MT-ND1 MT-ND3 RTN1 MT-ND2 CADM2 GNB1 PRKACB OLFM1 TMA7 PIK3R1 MTRNR2L1 LANCL1 PGM2L1 MT-CYB SV2B PCDH19 SCN3B PDE1A ATP5B ATP1B1 PPP3R1 RP11-111M22.2 ADAM23 ACTB CLSTN1 MT-ATP6 STXBP1 ARL6IP5 NRCAM RPL36A UQCRB SLC22A17 LMO3 NEGR1 GABRA1 ANKRD20A11P RPL31 RPL32 CHN1 DNM3 YWHAB BIRC5 SERINC3 PRKCG CALN1 PDE1C DDAH1 NPTX1 ATP9A SEPW1 MT2A SAP18 SH3GL2 TMOD2 POMP TM2D3 CYFIP2 PELI3 BSG DNAJB6 COPG1 LINC01296 HTR2A NAPB SPTBN1 RPL13A NAT8L MTRNR2L6 HCN1 FAM3C NCALD CAMK2G PRKAR1B SYT11 UTRN GRIN2A TMX4 CAP2 LMO4 MTPN HMGCS1 WBP2 SERINC1 PPP3CA PRKAR1A GRINA THBS4 MBP OCIAD1 GNAQ MT-ND4L RPS28 UHMK1 HS6ST3 ATP2B2 TCEB2 QDPR GMFB RGS12 SNX10 LMBRD2 CNTN1 ARF3 PNMA2 RPS26 APLP1 NDUFB7 MDH1 UBE2N NUAK1 TOMM20 RAP2A DDN FLOT2 CA11 PREPL CFH DCTPP1 STMN2 NPTXR STMN4 FBXL16 THY1 BASP1 NECAB1 EPHB6 ZFAND5 EPB41L3 RPL26 EDIL3 SLC17A7 SCD5 AES MIR3916 KCNC3 APLP2 PRKCB IGSF21 GDI1 CTNND2 SERPINI1 EPHA6 OPA1 ITM2B ATP6V1F TPD52 CDC42SE2 TAGLN3 ARL8B COPS7A PPM1A MRPS21 MS4A8 TEX2 CLU DKK3 ARL6IP1 UCHL1 SNCA TUBA4A SEMA3C STMN1P1 CREG2 SLC39A10 C4ORF3 NDUFB2 RAB3C PFKP COL12A1 LAMP5 GORASP2 TBCA OLA1 DCTN1 CFL1 PJA2 PAK1 SYT4 BCAP31 FTH1 SPARCL1 COX6C RRS1 FAM84A YWHAQ RAB7A SLC1A2 WDR47 C16ORF13 NDUFS5 YBEY SLC12A5 ENC1 C14ORF132 APP ARPC5L STMN3 BAALC KCNAB2 TXLNB RTN3 CDH8 SLC25A4 ATP5H TMSB4X COX17 KRAS RP11-20I23.1 MTRNR2L8 ATP6V0C KLC1 RELN ALDOA NUDT4 MTRNR2L12 GTF2H2C_2 ATP6V1G2 AC244489.1 TBC1D15 ARFGAP2\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "cortical layer 2-3 excitatory neuron A" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MT-CO1 PEBP1 CKB SCN1A ZNF385D SYT1 RTN4 RTN3 TOMM20 GPM6A EIF4A2 UBE2QL1 MT-CO3 CALM2 NGFRAP1 OLFM1 MT-CO2 RP11-111M22.2 RPL17-C18ORF32 SYTL2 RAB3B CDK17 FAM134A DYNLRB1 SOSTDC1 ATP1B1 HMGCS1 CHN1 MORF4L1 TRIM36 FASN CHL1 NAPB CACNG3 SERPINI1 CFH EDIL3 SKAP2 SUMO2 BCAS2 CREG2 TCEB1 MRPL37 AK5 NDFIP1 MT-ND3 ROBO2 CYFIP2 CX3CL1 RASGRF1 CSDE1 CPE PRKACB STUB1 CALM1 C11ORF31 TMSB10 PTPRS RPS28 TERF2IP MLLT11 DCTN1 PCDH8 CRIP2 CNTN1 LINC01296 MT-ND1 PTK2B ATP1A1 ENO2 EID1 GPR116 ADTRP BCAP31 KIFAP3 RPL37A NSDHL GDI1 TGOLN2 KCNA2 ATXN10 TPT1 CADM2 SYT3 PTPRZ1 TPI1 UHMK1 MT-ND2 MT-ND4 BASP1 IDS ARF5 AC244489.1\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "cortical layer 2-3 excitatory neuron A" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MT-ND1 SNAP25 MT-ND4 RAB3B MT-CO3 MT-CO2 MT-ND3 ENC1 RP11-219A15.1 MT-CO1 CHN1 RPL31 MT-CYB SYT1 RP11-111M22.2 SYTL2 ZNF385D IPCEF1 PPP3CA ATP1B1 HSP90AA1 RTN4 CALM2 BIRC5 STMN3 CLSTN1 IDS FAM19A1 RFC4 PGK1 ENO2 NEFL LMO4 DPYSL2 DYNLL1 CPE PSD3 SERINC1 CADM2 RAB3C GSKIP REEP5 ATP9A RTN3 TAF7L DYNC1I1 OPCML FAT3 MT-ATP6 JUN DMTN DCLK1 CLIP2 ANO3 RPS12 MT-ND2 YWHAG ITM2B IGFBP5 PACSIN1 CSDE1 PPIA PRKCB PEX5L SLC38A11 ATP5E CFH C1ORF52 ATP6V0E2 GABRA1 UCHL1 DNAJC21 TF ARL1 NUAK1 NCEH1 SYNPR INPP5F PKM RASGRF2 SYT11 PPP2CB ZNF503 PTPRT PDLIM5 UBE2V2 UBL5 HS6ST3 UBE2N COX7C AZIN1 MGST3 AP2B1 EHD3 PSAP ATP2B4 PEBP1 ZFAND5 PPM1A TMEM151A FTH1 RP11-1396O13.2 HNRNPH2 PTGES3 SELT TMSB4X CALM3 PFDN1 UQCRC1 ATP1A1 VSTM2L GRIN2A RPL38 YAF2 TEFM FAM19A2 HOPX NCALD TUBA1B MAP1B UHMK1 TUBB4A NEUROD2 SPON1 WFS1 SMIM13 FGF12 SLC9A6 NCAM2 PPA1 GPM6A PTK2B PCMT1 ITM2C RGS4 PPP2R1A GDA ANKRD20A11P KLC1 DSTN CHL1 PAK1 SLITRK1 KCNK1 SUB1 GHITM LMO3 RAB7A PRNP SPTBN1 CAP2 MORF4L2 MAST3 MT-ND5 PDP1 UQCRC2 NPTX2 TMTC1 ZNF365 FASN CLU IQSEC1 PLCB1 SERINC3 PPP2R2C SYT3 RELN TGOLN2 ARHGAP29 ATP6V1B2 SEC61G CHMP4B ARL4C ZFHX4 APLP2 PCDHA10 THY1 RAP2A COX4I1 FAM84A LMBR1 SCN4B HSP90AB1 GNG2 RPL13 VSNL1 FXYD6 PRKACB YWHAH COX7B NDUFA13 BAI2 SCN1A CYP1B1 CDC37 PPP2CA RAB2A CACNB1 WDR78 THSD7A PPP1CB MED10 WASF1 RPL8 SNAP91 TMX4 VPS35 DPP6 NDRG4 PSMC3 RBX1 ITPR2 NECAB1 YWHAB BCAS2 CNGB1 SYT4 CDK5R1 PSMA7 SYNJ1 PTPRS RHBDD2 POLR2J SCOC MT-ND4L PSMD2 ITFG1 RP11-529H22.1 NDUFS5 GUCY1B3 MYL6B NGFRAP1 OPA1 TBCA CRIP2 RAP1GAP2 VAMP2 SNX3 TKT FAM219A UQCRB SYN1 RPL37A MAPK1 PNMA2 C1ORF115 SGK223 CAB39 NREP BEX1 NDFIP1 VDAC1 EFR3A DDAH1 MTATP6P1 LDOC1L CCK SUMO2 KCNAB2 SLC38A1 ARHGAP35 CREG2 BTBD10 MRFAP1 RPL17 SERF2 RPL41 RPL21 RP11-20I23.1 RPL17-C18ORF32 ARF5 SKP1 ATP6V0C RPL36A AC244489.1 TBC1D15\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "cortical layer 2-3 excitatory neuron A" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: SNAP25 MT-CO3 MT-CO1 MTRNR2L1 NDFIP1 GPM6A MT-ND3 MT-ND4 RTN4 CALM2 PSD3 NECAB1 RTN3 EPB41L3 CHN1 MT-CO2 SV2B MTRNR2L12 PCDH17 CALM1 RAB3B SYTL2 ZNF385D TPI1 IPCEF1 APP MT-ND2 UQCRB NEGR1 ATP2B4 MT-ND1 PDP1 AP2M1 ITFG1 ARPP19 PRKACB MAP1B STXBP1 ARF1 VSNL1 KIF21A TESPA1 RPL38 CLSTN1 ETFB PRNP MTRNR2L8 APLP2 NGFRAP1 COX6C MT-CYB PREPL NFIA EIF4A2 RP11-219A15.1 LMO3 DMTN DPP6 ATP5J SLC30A3 OCIAD1 PEA15 ARF5 DYNLL2 ARL6IP1 NCDN PGRMC1 TCEAL5 KLF10 ACTR1A RPH3A CLU COX6B1 SYNJ1 MTRNR2L6 WASF1 RPL6 LZTS1 HTR2A TMEM14A SYT1 YWHAH LMBRD2 TAGLN3 COX4I1 MBP CDK5R1 PRKCB MCHR2 EIF1 UBQLN2 GAPDH CHL1 GRINA RAB11A VAMP2 REEP5 MLLT11 LMO4 CTBP1 MTPN ATP1B1 MAPRE2 TMX4 ENO2 RPL8 YWHAG RPL41 MMD SLC8A2 PSAP SNX10 GPRC5B EFR3A GNB1 POLR2I APLP1 GRIN2A DCLK1 RAB4A SUMO2 ADORA1 VSTM2A SUMO1 MAOB HMGCS1 ATP5I GNG2 PKM CADPS2 CYFIP2 RPL31 STXBP6 RLIM RPS28 SYN2 TSPYL4 ARHGAP35 RORB IQSEC1 SYT11 RAD23B RPL17-C18ORF32 TF HSP90AA1 SPOCK2 RPL7 CXXC4 RAB6A NEFL RAB37 COX7C ARL8B PPP2R2B SCN1B KCNC2 TOMM7 SCG2 SLC17A7 MAPK1 SERINC3 TLE4 SARAF HSP90AB1 ARL6IP5 PHYHIP HS6ST3 FAM3C MORF4L1 NEFM ATP6V1A NNAT C4ORF3 ID2 PET100 ITM2B RAB1A TMTC1 CD99L2 RPL17 CLTB NUAK1 PAM CKB UBA1 SLC12A5 SCN3B SCN4B RAB3A SRP14 RAB11FIP5 PPP3R1 RPL37A SCAMP5 TAF7L ATP6V1F ACLY ATP1A1 KCNK1 SMIM13 PFN2 RPL36A ATP6V0C IDS RP11-20I23.1 RPL3 RPL13A PAK1 ARFGAP2\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "cortical layer 2-3 excitatory neuron A" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MT-CO1 MT-ATP6 MT-ND2 MT-ND4 RPL37A MT-CO3 MTRNR2L12 MT-ND1 FAIM2 PLEKHG1 NECAB1 LMO4 SYTL2 TBC1D15 DNAJC21 SNAP25 ADAM23 RTN1 APLP1 NRGN BTBD1 UQCRQ PIP5K1B ATP5E COX6B1 MYO1B SMYD2 APP TMEM59L SYT13 DPYSL2 CAPZA2 RP11-664H7.2 FXYD6 BRK1 SMAP2 KIF3C NPTX1 RAB3A SEZ6L2 NEFL RNF181 ARPP19 HS3ST5 GRIN2A EID1 HOMER1 RP11-111M22.2 RPS15 CEND1 NAPB CDK5R1 SLC8A2 MTRNR2L8 CCDC25 HK1 SLC22A17 CREG2 SLC39A10 C1QBP SPOCK1 C11ORF31 ONECUT2 PGRMC1 ATP2B2 ENO2 ZFAND5 GAP43 RPL32 NEGR1 RTN3 SCN1A SYT5 RGS4 ACTG1 GABRA1 NDUFB10 HSP90AA1 SDCBP INPP5F OR6D1P MTATP6P1 HSPB1 GPCPD1 ARL4C NCAM2 SKP1 PSD3 AC244489.1 GPATCH4 SYT1 VPS35 ANKRD20A11P ARL8A VAMP2 SDHAF1 EPHA6 RPS2 RP11-219A15.1 IDS HNRNPA1P40\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "cortical layer 2-3 excitatory neuron A" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: SNAP25 YWHAG RTN4 PSD3 ENC1 ARFGAP2 ANKRD20A11P MAP1B ATP6AP2 OLFM1 MT-ND4 PNKD HOPX PRKCB DCTN1 SYNGR1 MT-CO3 RAB3B PPP1R7 BAI2 GLIS3 RPL35 MT-ND1 MTCH1 SYT11 SHARPIN HAPLN4 SPTBN1 RP11-219A15.1 FKBP1A ATP6V0B UQCRH ARL6IP1 SNRPN DYNLL1 TMEM130 SERPINE2 IDI1 SYT13 RTN3 GNAQ PPP3CA PTMA PSAP KLHDC3 TSPYL1 BASP1 ATP9A SLC17A7 ARF1 FILIP1L PPP2CB BEX4 MAGED1 MT-ND3 KIF21A APLP1 GRINA EID1 LMO4 FXYD6 PAFAH1B2 C11ORF31 PFKP GABRA1 PREPL SLC9A6 LMO3 CKB NECAB1 HTR3A ELMO1 CTNNB1 MT-CO2 TMEM59L PTPRT HAMP ATXN10 COL5A3 RORB TERF2IP ATP5A1 VDAC3 SRP14 PNMAL2 CPLX2 TRABD2A RPL37A VSTM2A SYN1 BEX1 COPS8 STMN3 AK5 UBQLN2 CHN1 FABP3 PHYHIP RAB7A IDS NDUFA4 TMTC1 SCN3B SLC35B1 CADM3 FAM19A2 TMEM65 PTK2B HSP90AA1 HNRNPH2 ITM2B EIF4A2 UCHL1 TBC1D15 TUBB GTF2H2C_2 SYTL2 DNAJC21 ZNF385D\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "cortical layer 2-3 excitatory neuron A" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MT-CO1 MT-CO2 MT-CO3 MT-ND4 SYT1 SNAP25 MT-ATP6 MT-ND1 RTN4 ACTB NRGN FXYD6 MT-ND3 GPM6A PPP3CA DCLK1 MT-CYB MT-ND2 RP11-111M22.2 HNRNPA1P40 CFH OR6D1P FBXL15 CHGB BAD RAB1A SNN SNRPN CHN1 TESPA1 RAB3B ROBO2 SERINC3 PPP3R1 PTK2B ACOT7 STXBP1 PDE1A CNTN1 NAP1L3 TMTC4 MMD DAB2 MTATP6P1 TUBA1B BLNK CLTA MRPL51 GUCY1B3 WSB2 NCDN ZNF208 CALM2 RAB7A SCN3B NRCAM CALM1 TSPYL1 ETFB CCT5 ENC1 TPPP IQSEC1 GPCPD1 NAT8L MFN2 PPP3CB CTXN3 MTRNR2L1 PRKAR1B SLC17A7 FAT3 IDS TMEM164 ITM2B HN1 NECAB1 CLIP3 IDH3A SEPW1 CADM2 NDRG4 SSBP3 RGS4 SIRPA LMO4 RTN3 BEX5 KLHDC3 NGFRAP1 ATP1A3 C14ORF132 NCAM2 TUBD1 YWHAZ CHAC2 FBXL16 ATP2A2 CFL2 PPP2CA PCDH8 NAPB RIT2 MTRNR2L12 NDUFA12 MTRNR2L6 AC244489.1 CYB5R3\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "cortical layer 2-3 excitatory neuron A" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MT-CO3 CALM1 IDS PPP3CA SNAP25 RTN4 MT-CO1 PRNP LMO3 SYTL2 CCDC154 CREG2 GNAQ MT-CO2 PTK2B PREPL GPM6A PJA2 PDE1A RP11-111M22.2 PRKACB SELT RPL17 MT-ND2 HSP90AA1 SLC8A2 CHN1 PCDH8 RPL31 HOMER1 HNRNPA1P40 UBL4A KIFAP3 ENSA LDHB MT-ND4 FAM219A SARAF CHGB IPCEF1 SEPW1 DYNLL1 VAMP2 COL24A1 MAP2K4 NAPB PRKCB SLC22A17 TENM3 THSD7A YWHAH SPOCK2 SLC17A7 MAPK1 GNB1 STMN3 NPTXR TUBA4A ANAPC11 RGS12 FAIM2 MT-ND1 YWHAB PIK3R1 MAP2K1 NRCAM DMTN GABRA1 BDNF CAMKK2 YWHAQ CLTC PSD3 FAM19A1 ATPAF1 KCNAB2 NDUFS5 ETS2 SPCS2 RAB27B SLC1A2 CKB ELMO1 CACNG3 RPS27A FTL ATP6V0E2 ATP2B2 NDFIP2 TMEM59L EFNB1 MTRNR2L1 SCN3B CORO2B MTRNR2L12 CLIP3 GSK3A C11ORF84 PRDX1 PCP4 RASGRF2 CALM3 C1ORF95 COX6A1 RANBP1 PCDHGA5 TOMM20 SLC39A10 WASL FBXW11 BSN PRKAR1A OCIAD1 SSTR2 MLLT11 INPP5F GAP43 ENC1 RPL35 JUND YWHAZ RFK CPE STXBP1 C14ORF2 HS6ST3 HS3ST4 SERINC1 ITM2B ZBTB18 NARS PPP2R2C MPPED1 KIF21A HMGCR ACTB KCNA1 CADM2 HSP90AB1 PEBP1 RPL37A CTXN3 MAP1B PET100 MT-CYB EIF1AX ARF3 PRIM1 MAP1A MT-ND4L GAPDH DCLK1 DPP6 NR1I3 RPL41 NGRN PPP3R1 PCDHA9 PCDHA10 PCDHA4 PCDHAC1 DNAJC21 TBC1D15\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "cortical layer 2-3 excitatory neuron A" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: RAB3B ZNF385D SYTL2 TBC1D15 ARL6IP1 PPIH PREPL NDUFA4 MT-CYB TESPA1 RPL36A RPL38 RPL37A GPM6A RPL26 SNAP25 IDS BIRC5 NR1I3 HOMER1 FAM219A TSPAN4 DPYSL2 PPM1A TEX2 PIK3R1 GADD45GIP1 DCLK1 RPL11 ATP6AP2 ATP5J CD99L2 GPR98 MT-ND4 BCAP31 CADPS2 RAP2A MYO1B ATP5E PINK1 PCDH8 COL4A3 ATP6V1C1 BEX2 SLC22A17 SPTBN1 TPT1 MAP7D1 MRPS7 YWHAQ SERINC3 PPP2R1A PCDH17 TOMM7 PPIA CALM3 LMO3 CADM3 RPL12 ATP1B1 PEX5L CALM1 OPN3 WASF1 DSTN RPL35 NRCAM NARS SYT4 ATP5O ACTG1 ATP5I NDUFB1 FAM84A COX7C YWHAB SLC8A2 NEFL RP11-111M22.2 VPS35 COX4I1 TGOLN2 DNAJC6 RPS28 PRKAR1A CHN1 NDUFA8 SCN1A CCT5 WDR47 CNTN1 C3ORF80 PSD3 SV2C GNG2 RTN1 ARPP19 GDI1 HDLBP UCHL1 RPL32 RPL31 LPPR4 SMIM12 RPL21 BMP8A RAB6B NDUFA13 NSF RPL18A HNRNPA1P40 CYB5R3\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "cortical layer 2-3 excitatory neuron A" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MT-CO3 MT-ND2 MT-CO2 CHN1 MT-CO1 SNAP25 RTN4 RPL15 HOPX TBC1D15 CFH TUBD1 CALM3 SCD5 SCOC MORF4L2 DKK3 PFN2 RP11-111M22.2 RPL32 PGK1 SYT1 RPL37A ACTB SERPINE2 DDAH1 NPTX1 DPP6 SERINC1 TMSB10 NDFIP1 RAB6A NAP1L2 SLC12A5 EIF4A2 STXBP1 SYTL2 COX6C CISD1 MAPK8IP2 TERF2IP MFSD6 RPL31 CLIP3 TCEB2 TKT LCN12 CYCS ATP5E CADM2 KIF21A GAP43 CPE MORF4L1 RAB1A NECAB1 RPL12 KIFAP3 CHRDL1 PSD3 SIRPA GNG2 FAIM2 GRIN3A PIK3R1 MT-ND3 GRIN2A MTCH1 CHP1 SPTBN1 DHCR24 ROBO2 QKI MTRNR2L1 THYN1 PRNP PTK2B H2AFZ ANGPT2 SNAP91 AK5 CMAS CBX6 APBB1 CNGB1 MAP1A RASSF8 MZT1 PNKD RHEB DIRAS1 OLFM1 ATP1B1 TSPYL1 OXR1 TP53I11 YAP1 CTNNB1 GPM6A TOMM20 PTMA CDC42SE2 PET100 NAP1L5 ARL8B PNMA1 ISCU NDUFA11 COX7A2 RTN3 CDH22 ITM2B SLC38A11 TBR1 SYT4 RTN1 CREG2 WBSCR17 WASF1 CHADL LAMP5 MT3 IDS REEP5 MSMO1 MT-CYB UBE2E3 ATP5J2 ACTR10 NCDN RPL36A MAP7D1 FAT3 ARL6IP1 PRKCE MAP2K1 APP ATP1A1 AP2B1 PI4KA ATP4A ARHGAP6 ZBTB18 UROD ADD2 CACNB1 PREPL SERINC3 RPL17 LZTS1 PEBP1 PRKCB UQCRB PPP2R2C SLITRK1 SLC25A6 ATXN10 PTCHD4 IFT52 RAB5C CAB39 SYNPO BSG TSPAN7 TMEM65 APLP1 EDIL3 TPI1 RPS12 TSC22D1 ENO2 MAST3 TUBA4A PSAP WFS1 RPL6 MTRNR2L6 RPL21\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "cortical layer 2-3 excitatory neuron A" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MT-CO1 MT-CO2 CALM1 RAB3B MT-ND4 MT-ND1 MTRNR2L1 RP11-111M22.2 TLE4 MT-ND3 MT-CYB OXR1 NEUROD2 HNRNPA1P40 RPS3A ATP9A CLTC NAPA RPS15 SCN2B WASF1 DKK3 GLIS3 UHMK1 CCK CABP1 AES SEZ6L2 SERINC1 PCDHGA5 CDC37 PRDX2 GABRA1 AP1S1 ACTB CLSTN2 NAPB TERF2IP SLC39A10 RPL3 TMEM59L RTN4 BRICD5 CCT5 SNX3 FBXL16 HSP90AB1 CBX6 MIR6723 QKI TUBA1B SPARCL1 SYN1 ITFG1 BRK1 NECAB1 RPL36A PPTC7 COX4I1 RTN1 ARL1 GRIN1 BAD SSTR2 GRIN2A IGSF21 TKT CSDE1 VDAC2 FOXP2 YWHAH NRCAM CTBP1 PRKCE CACNA1H KIFAP3 BEX5 MAP1B NRGN CNRIP1 SYT1 PRKCB DNAJC6 COL5A3 PLEKHD1 ALDOA MTRNR2L6 SYTL2\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "cortical layer 2-3 excitatory neuron A" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: SNAP25 RTN4 MT-CO1 CALM1 CALM2 CHN1 ZNF385D RAB3B ANKRD20A11P NELL2 DPP6 CNTN1 PRKCB RPL32 HS6ST3 ENC1 FAM84A NUAK1 YWHAG SLC25A4 PCDH19 SLC39A10 MT-ND4 RPS15 OAZ1 MT-ND1 BASP1 GABRA1 SERINC1 RPL37A MT-ATP6 SEZ6L ADCYAP1 SNX3 TRIM37 ANO3 YWHAB SERF2 ATP6V1A GDI1 ENO1 UQCRC2 YWHAZ CDC42SE2 RPL8 CADM2 OLFM1 NPTX1 SLC12A5 TLE4 PPP2R1A HSP90AA1 YAF2 MT-ND2 HEY1 CDK5R1 ATP2B4 SRD5A1 CBX6 PCDHGA10 DSTN GUCY1A3 UHMK1 HMGCR SLC22A17 TMX4 EIF4A2 NCEH1 HSPA4 CABP1 WASL GGTLC2 GNAQ CDH8 NCAM2 CLU PKM SYT1 PGM2L1 SPARCL1 TP53I11 GNG3 UCHL1 VSTM2A PI4KA LAMP5 PRKACB VSTM2L ATP6V0E2 ERBB3 DCLK3 NHP2 RPL13 RHBDD2 KIF21A DYNC1I1 SH3BGRL3 SYT17 PACSIN1 ARL8B PGRMC1 MAPK1 RAB27B MT-CO3 COX4I1 TOMM7 CREG2 JUND APLP2 MT-ND3 ONECUT2 ATP5O CTBP1 PCMT1 PPARGC1A LMBRD2 SGK223 TSPYL4 IGSF21 SNX10 TMEM59L RPL35 PIK3R1 GNG2 GTF2H2C_2 COX7B LMO3 TESPA1 PRPS1 MRPS21 MTCH1 DCLK1 TMEM130 NRCAM EDIL3 SLC30A3 TSPAN7 CKB PLEKHD1 MTATP6P1 PRNP COX14 REPS2 SPTBN1 CPLX2 TUBA1B SCN3B CPE RTN3 ZNF804A PPP3CA CYP1B1 NDUFC2 MT-CO2 SERPINE2 NGEF CHL1 C19ORF53 TMA7 RAB3A ZMAT2 STXBP1 DRAP1 RPL23A TMSB4X GMFB RAPGEF5 NEGR1 ZBTB18 EXTL2 SSBP3 POMP IDS RPL3 GABARAP NSF RPL36A RPL21 ATP6V1G2 RPS28 RP11-219A15.1 AC244489.1 TBC1D15 DNAJC21\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "cortical layer 2-3 excitatory neuron A" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: RAB3B SYTL2 SNAP25 RTN1 EIF4A2 CHN1 RPL37A ANO3 PRKACB SYT1 MT-CO2 SNRPN CALM1 MT-CO3 MT-CO1 RPL21 ENC1 RPL12 HINT1 PSD3 UBC MT-ATP6 CALM2 PRNP GRIN2A MT-ND3 RP11-219A15.1 HMGCR PRUNE2 CLTC RP11-111M22.2 PRKCB TUBA1B AP2M1 TM2D3 OLFM1 SPARCL1 NEFM AES USMG5 RTN3 TCEB1 DCTN1 RPL6 ARPP19 MAP1B SYN2 RTN4 SPTBN1 VDAC1 GABRA1 PIK3R1 RPL26 APP MT-ND1 CCDC124 PCMT1 GNAQ NRCAM RPL41 GPCPD1 YWHAB YWHAH RPL17-C18ORF32 COX7C LMO4 HSP90AB1 STXBP1 NELL2 OR6D1P MORF4L1 SYT13 OAZ1 BSG MT-ND4 BIRC5 TMEM130 ATP2B2 PPP1CB SUMO1 DDAH1 PNMA2 CCK TOMM7 EDF1 NCEH1 KCNC2 TRAPPC1 PNMA1 MOBP DMTN ATP5A1 TCEB2 KCNV1 PCSK1 ONECUT2 ELMO1 HAPLN4 UQCRQ RHOB PDE1C GRM3 CPLX2 NCDN GABARAPL1 FTL PGK1 HCN1 RPS26 BEX4 SCN1A FAM19A2 HSPB3 SERINC3 ZBTB18 NAPB CBLN4 HOMER1 BEX5 SERP2 UCHL1 KITLG CAPZA2 ADAM23 ESYT1 REEP5 WBP11 RPL8 FAM3C SLC12A5 SMAP2 MAGED1 RORB TMSB4X MRPL47 AP3S1 ITM2B LAMTOR5 PDP1 NAP1L3 HMP19 GSK3A DPY19L1 KLC1 PEX5L NUAK1 RPL32 ATP9A CREG2 LIN7B SLC9A1 LMBRD2 C14ORF132 CCDC69 MT-ND5 PTPRN CABP1 FIBP WASF1 TBCB NGEF PREPL PCDH19 USP5 AK5 PSMB5 APLP1 TEFM HDLBP CADM2 DNAJA1 SLC17A6 SLC24A2 LMO3 DRAP1 RCAN2 TPT1 GDI1 RPS4X GABPB1 PSAP TPGS2 UBA1 SLC38A1 EFCAB10 BNIP3 SAP18 ACP1 FOXQ1 SERPINE2 EFR3A ZNF703 NGFRAP1 SV2B NAPA RAB4A ZNF365 CMAS SULT4A1 RPL38 M1AP OPN3 POLR2K NDUFB8 EPS15 BEND4 ARL4C SELT SAMM50 IDS SNX10 FAT3 TMSB10 NPTXR BASP1 YWHAZ MTRNR2L12 CLSTN1 MAPK1 HSPA4 VAMP2 BEX2 RPL36A HRASLS5 TSPYL1 RGS4 EIF1B ARF5 TCEA2 ATP1A1 COX6C NDUFA5 TMEM14A CDH13 SEPW1 TMTC1 KIF1A STMN2 UQCRB KIF21A RAB27B STMN4 SLC7A8 TBCA RPL31 RASGRF2 PPP3CA TNNT2 HOPX ADCYAP1 C14ORF2 NPTX1 RPS10 RPL18A RP11-20I23.1 NGRN RPL3 ATP6V0C AC244489.1\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "cortical layer 2-3 excitatory neuron A" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: SYTL2 NR1I3 ITPR2 AP1S1 PRKCB RTN4 TMSB4X RPL23A CDK5R1 ATP2A2 CALM1 PEBP1 MAP1B UQCRH SNAP91 BCKDHB SERPINE2 PRKACB YWHAG PNMA2 TF PDP1 MYEOV2 ARL4C RPS12 PCDH8 VDAC2 GPR98 CLU PREPL MT-ND4 PAFAH1B2 PTMA GUCY1B3 CNTNAP5 TSPYL1 NUAK1 PFN2 GRIN2A KCNAB2 STXBP1 PIK3R1 EIF1AX FAIM2 TBCA PSAP SUMO2 ENPP7P8 ALG3 TSPAN7 TCEB1 SCML2 SH3GL2 SIRPA GYG1 HS6ST3 APLF CALM3 SLC17A7 CA10 OPCML RPL37A ENO2 REEP2 CABP1 NECAB1 IDH3A RPL26 POLR2J SDCBP ATP9A SLC12A5 ZFAND5 C3ORF80 RGS12 SNAP25 GDI1 PTK2B EIF4A2 MAP2K4 OPN3 THY1 UQCRC2 TOMM7 EID1 KCNV1 SPOCK2 NDFIP1 CTNND2 ZNF804A CIAPIN1 COPS8 SKP1 ACTB CETN2 VDAC3 MAP7D2 SLC8A2 RPL31 NDUFS5 DPP6 HLA-DQB1 DPY30 ARFGAP2 PET100 SERF2 RP11-20I23.1 ATP6V0C RPS26 ATP1A1 AC244489.1 RAB3B TBC1D15\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "cortical layer 2-3 excitatory neuron A" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: RPL35 RPL37A EPB41L3 CALM2 MTRNR2L1 MT-CO3 NUDT21 TMEM179B YWHAG MT-ND4 SNAP25 CHN1 RPL31 MAP1B MT-CYB MT-CO1 HEY1 TMEM258 KIF21A ARL6IP1 PFKP SYT1 CADM2 PLP1 NEGR1 ACTR10 NECAB1 UCHL1 RTN4 FGF12 NCAM2 ENC1 TPT1 SYNPO RAB3C SYT11 PDE1A RPL32 AP2M1 RFK ATP5E MTRNR2L12 RP11-111M22.2 TSPYL1 ANKRD18A PFDN1 PPP3CB HNRNPH2 GOT1 SARAF SCN1A MAPK1 RAB3IP ALDH5A1 C14ORF2 SPARCL1 MOBP RAP2A UQCRB COX7A1 NDFIP1 MAP4 NCEH1 EPS15 IFI6 RHOB CDC42SE2 HSP90AA1 REPS2 RPL15 GAP43 NRCAM SEZ6L GPCPD1 CYP1B1 MT-CO2 SLC39A10 TLN2 CDK17 PTGES3 GPM6A SLC30A3 OPCML PPP1CB ENO2 SLC7A8 OCIAD1 RPS12 LMBRD2 NPTN CADPS2 PRKCE TAF7L PLD3 SLC38A11 GRIN2A MTCH1 RAB3B SYTL2 ZNF385D RPL36A RPL3 MTRNR2L6 HNRNPA1P40 KLC1\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "cortical layer 2-3 excitatory neuron A" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: CHN1 MT-CO1 MT-ND3 MT-ND2 MT-ND4 MT-ATP6 MT-CO2 MT-ND1 SNAP25 SYTL2 MT-CYB CALM1 RAB3B CALM2 MT-CO3 PIK3R1 PHYHIP VSNL1 SERINC1 LMO3 DKK3 THY1 RTN3 SPARCL1 NPTX1 PPP3CA RP11-111M22.2 OR6D1P SCN3B RAB40B SNRPN RTN4 NDFIP2 MTATP6P1 MLF2 CBX6 GDI1 YWHAB PPP1CB KITLG VSTM2A HSP90AA1 BEX1 NCAM2 ENC1 TESPA1 ZNF804A TSPYL1 MYEOV2 UCHL1 NECAB1 CCK PRNP WBP2 ARPP19 PEA15 PMEPA1 GDA CNRIP1 PRKAR1B HSP90AB1 NEUROD1 SULT4A1 MAPK1 SCN1A PRKCB SLC39A10 RP11-219A15.1 ATP1A1 NR1I3 NPTN NRCAM GLRA3 HCN1 OPCML PEBP1 PAFAH1B2 HOPX TPRG1L NAP1L3 PPP2CA PPP3CB OAZ1 ARL6IP5 UQCRC2 LZTS1 SEZ6L2 MT-ND5 FTL STK39 RPL6 KCNK1 CLU CNP SEZ6L KCNH5 SELT CAP2 CDH8 SEPW1 TOMM20 ZBTB18 NUAK1 PNMA2 FAM219A LAMA2 INPP5F MTRNR2L1 CADM3 C1QBP RAPGEF5 ASAP1 RAB11A MFSD6 PRDM8 DPYSL2 VPS35 MAP1B TERF2IP APP GPM6A RPS26 PLCB1 OPA1 GUCY1B3 NDUFA2 C16ORF13 FILIP1L PFDN1 OLFM1 SARAF ABCA8 GRIN2A CIAPIN1 KCNMB4 GLIS3 TM2D3 TSPYL4 POLR2M SERPINI1 PJA2 PCDH17 RAB6B SYNPO ZNF365 FTH1 GUCY1A3 GRB14 PCBP1 UQCR11 KCNC2 TUBA1B SYT4 YWHAH NXPH2 ATP2B2 SYN2 PCDHB4 RTN4R RAP2A PKM NEUROD6 EIF4A2 TMEM59L WASF1 CNTNAP5 SYNJ1 EPHA6 RAB2A FKBP1A ACTG1 PPP2R1A MEGF10 PREPL ATP2B4 BSN NEFM SYT1 COX6B1 EHD3 ENO2 FAM149B1 ZMAT2 PGM2L1 IPCEF1 SNAP91 SYT11 NDRG2 PPP3R1 CKB TLE4 NDUFV1 BAALC LMBRD2 FAM127A SPTBN1 IQSEC1 PEX5L TMSB10 PRKCE ARFGAP2 FGF12 CRIP2 PLD3 FAM19A1 LMO4 DCLK1 PGAM1 RHBDD2 RABAC1 TCEAL7 BASP1 PTK2B PSD3 FBXW11 TRIM36 PTPRT ANXA7 FAIM2 RTN1 SUMO3 SCN1B MTG1 TMOD2 CHL1 ATP1B1 SLC9A6 CAMK4 ATP6AP2 CREG2 RPL32 FIGN MDH1 ANGPT2 SLC35B1 FLOT2 BEX4 MRPS21 MORF4L1 MBP GPR98 MTRNR2L6 NSF NGRN SERF2 AC244489.1 MIF PCDHGA10 PCDHGA5 PCDHGA6 TBC1D15 DNAJC21\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "cortical layer 2-3 excitatory neuron A" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: SNAP25 CADM2 RP11-219A15.1 THSD7A CHN1 DNAJC21 SYTL2 RAB3B PPP3CA ETFB PIK3R1 ENO2 ENC1 ATOH8 MMD GLRA3 CLTC ONECUT2 OXR1 NELL2 RPL31 RTN4 NRCAM SV2B RPL38 NPTX1 SH3BGRL2 BANF1 ZFHX4 PRKCE PRKCB NAPA POMP ARL8A VDAC3 MTRNR2L12 SARAF PRKACB NECAB1 GAP43 PTK2B MT-ND4 ANO3 NPTXR RAB3IP PDP1 CLU SNRPN SPARCL1 PLCB1 FAM19A1 AP1S1 RTN3 MAGED1 SNX10 SELT RPL23A TCEB2 CAMKK2 TUBA4A SCN3B LRRIQ1 TBR1 FKBP1A LINC01296 GPM6A PREPL GPR132 UQCRB FAM219A CDK17 FBXW11 CDH13 CTBP1 UBA1 RPS4X PDE1A UBE2V2 BIRC5 HSPA8 CKB GAPDH TCEAL7 BHLHE40 CEND1 CLSTN2 KLC1 CACNB1 OLFM1 RP11-111M22.2 TAGLN3 ELMO1 ITM2B OCIAD1 HOMER1 AK5 PLD3 RPL36A RAB7A ATRN ZNF804A PSMA7 SNX3 LMO4 EPS15 SKAP2 SYT1 SYNPO GSTP1 GABARAPL2 MAP4 SSTR2 POU3F1 CALM3 RPS28 DDN FIBP SRP9 VAPB INSIG1 CLPTM1 KLHDC3 CREG2 TESPA1 DNER UTRN GNG2 TMEM59L SOD1 PPM1A ARHGAP35 LPPR4 MTRNR2L8 COX7A1 DKK3 SLC12A5 GLUL RPL35 GPCPD1 CALM2 LAMP5 NUDT21 SERF2 NGRN\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "cortical layer 2-3 excitatory neuron A" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: RAB3B SNAP25 RP11-111M22.2 PPP3CA NECAB1 MT-CO1 SYTL2 FTH1 MT-CYB ATP1B1 MAP1B CALM2 GRIN1 UCHL1 SYT1 KLC1 YWHAG TOMM20 MT-ATP6 PTPRN MT-ND2 PHYHIP LINC01296 AK5 RPS28 GHITM GRIN2A UROS CHN1 CALM1 ATP6V1B2 COX4I1 RELL2 ANKRD30A EPHB6 RTN3 CREG2 RAB2A MAP1A PCSK1 REEP5 NAPB ACTB CLU TOLLIP GAP43 TMEM160 UHMK1 ELAVL4 MYL6B SOX4 RXFP1 SCAMP5 GABRA1 CEND1 ATP5A1 OPA1 FTL EIF1 PSD3 COL5A2 LMO4 SKP1 SYT4 STMN2 SCN3B CCDC85B MTRNR2L1 BASP1 CKB CCK PGM2L1 AHNAK2 NELL2 RPS27A PIK3R1 HOPX TLN2 RPL18A RTN1 TPT1 RPL13A CDK5R1 DAB2 AC244489.1 STMN3 HNRNPA1P40 ARFGAP2 IDS BIRC5 NR1I3 LYNX1 THY1 RLIM TESPA1 ANP32C TUBD1 CCDC115 VAMP2 ITFG1 TM6SF1 COX6A1 ATXN10 TSC22D1 HSP90AA1 RPL32 TMSB10 ZBBX MT-CO3 PSAP LAMA3 FBXL15 RPL26 SCN2B EXTL2 EPB41L3 VSTM2L ZMAT2 RFC4 C12ORF57 FAM84A PPP2CB VDAC2 MAP1LC3A UQCRB TUBA1B DNAJB6 ENO2 JUND SARAF ENO1 CCDC183 THYN1 MYEOV2 SCOC TRHDE LAGE3 GAPDH VWF SCN1A MDH1 DNM3 DKK3 ATP1A1 FASN MAPRE3 MTRNR2L6 PPP2R2B POLR2K TCEB2 MRPL33 RHBDD2 BRICD5 MT3 CTNND2 ADAM23 SYT13 KCNK1 PGK1 TSPYL1 PPP3CB EFR3A GABARAPL1 YWHAZ PPDPF RNF11 NDUFB7 RHEB ACOT7 CX3CL1 SNX17 SCN1B NDUFAF2 PTK2B STAG3 SPRYD3 PEBP1 PRIM1 SLC30A3 CPE MORF4L2 ATP6V1C1 CPNE8 RAPGEF5 CLTC PDP1 ARPP19 MT-CO2 LAMTOR5 OLFM2 OAZ1 IDI1 RPL26L1 PVRL1 SOD1 STMN4 OPN3 PAM WDR47 ATP5E RPS12 C19ORF10 COX7C ADD2 TPGS2 MTPN STX1B NEFL YWHAB ATP2B4 CBLN4 UBE2V2 MAPK1 NRCAM TMEM59L OXR1 CLSTN1 UBA52 NRGN LRP1B PRDX1 FIS1 PET100 RELN MPPED1 CRYM LDHB MT-ND3 RPL21 CERS6 STXBP1 CBX6 NAP1L3 USMG5 UQCRH CPLX2 ARL6IP5 CDS1 DNAJC6 PSMD12 CAPNS1 MT-ND4 YBEY ATP5J PPARGC1A CAMKK2 CABP1 SEPW1 DCLK1 MORF4L1 RPL12 NRN1 VSTM2A RGS4 SUMO1 PRKCE GPR98 SERPINF1 SEPT4 CALM3 AURKAIP1 CDC42SE2 NDUFB4 PODXL RASGRF1 GNAQ RPL37A FAM174A CD24 ACTG1 LIMK1 MAP2K4 ONECUT2 SERINC3 FAM163B RPL3 ITM2B MT-ND4L CDH8 MZT2B BEX2 GDI1 TMEM150C HSP90AB1 ALDH5A1 ALDOC TMEM117 MT-ND1 MYBPC1 BNIP3 MAP7D2 EGFL7 NME1 GNB1 CACNB1 SYN1 FAT3 SYNGR1 SNCB SERF2 CCDC144NL RPL17 CNTNAP3 RPL17-C18ORF32\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "cortical layer 2-3 excitatory neuron A" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MT-CO3 MT-CO1 CHN1 TMSB4X SNAP25 DNAJC21 HSP90AA1 MT-ND2 MTRNR2L12 MT-ATP6 ATP1B1 RP11-111M22.2 RTN4 PRKACB MT-CO2 MAP1B YWHAG APOE LMBRD2 C1QC RPS28 C1QB MT-ND3 SCN1A PGK1 LINC01296 SYTL2 GRIN2A RPL36A LPAR6 DKK3 FAM84A ZMAT2 OLFM1 SARAF CSF3R TSPAN7 FTH1 PAK1 ATP6AP2 RORB PREPL OR6D1P BIRC5 BASP1 HAMP CYFIP2 APLP1 HOPX APLP2 SEPW1 SYT1 ACTB NRF1 PRKCB CALM1 SKP1 MAST3 PPP3CA MT-ND1 KIF5A YWHAB ARL6IP1 SULT4A1 BSG ISCU CALM2 PJA2 FAM19A1 IFI44L BAI2 NECAB1 PDK4 MTRNR2L1 NEGR1 IDS ARFGAP2 TUBD1 MFSD6 PI4KA CADPS2 TPT1 RPS15 EIF4A2 MAPK8IP2 SYT5 LMO4 HHATL NFE2L1 SIRPA ZBTB18 NRN1 UBB EPB41L3 PRUNE2 PIK3R1 ALDOC SLC12A5 SLC1A3 ATP1A3 SCN3B ANAPC11 ALDH1L1 TERF2IP FARSA CERS6 PKM TSC22D1 QKI MAPK1 MRVI1 RANBP1 GAPDH NAP1L3 PEX5L RPL13 MAP2K4 JUND SPTBN1 NREP WASF1 NDUFC1 PLSCR1 NDUFAF3 PLD3 PLP1 MYL6 PNMAL2 MS4A7 RELL2 CCR1 SERINC3 COL5A2 RAB31 EIF4G2 TOMM7 ONECUT2 MAP1LC3B ZFP36L2 NDUFB2 ATP6V1B2 TMEM147 TMEM59L PPIH ATP5E TPPP SNCA SLCO2B1 GUCY1B3 VSTM2A ACTG1 ATP6V1C1 GNG2 EPHB1 SLC9A6 PARP9 RPL6 CACNA2D2 PNMA1 LYSMD2 TUSC2 KCNAB3 CNDP1 GABRA1 SYT11 UROD TBC1D7 SYT13 NEUROD1 AP3S1 ENOPH1 WNT5A CABP1 SELT SPI1 KCTD12 ARPP19 RCAN2 EPHB6 RHBDD2 MCHR2 PNMAL1 PPP3R1 AES ATPAF1 CAPZB SPP1 MTATP6P1 PPP2R1A C1ORF105 PSD3 DPYSL2 MT-CYB ACTR10 CDC37 RASGRF2 CHMP4B NEFL CD53 FBXW11 MT-ND5 KIF21A FBXL16 PRDM8 RELN CST3 STAB1 COL24A1 PPP3CB FCGR3A TMSB10 CA10 SLC16A11 PRNP MRPS21 TBR1 NFIA EIF1 VAMP2 ALCAM TUBA1B ELAVL4 APP CNTN1 PPP2CA EPHX2 GDI1 CYBB PEBP1 PSMD8 NME1 TSPYL1 PLOD2 ATP5A1 SLC17A7 ITGB2 NELL2 VSNL1 ERH SNX3 YAF2 PSMC3 MARCKS SMIM13 OCIAD1 REEP5 CLU RTN1 UQCRQ RPL37A TMTC4 ELMO1 KLHL5 DEXI TLE4 FOS KLC1 IL13RA1 CISD1 RPL17P50 CPLX2 NDUFS5 NRCAM PDE1A EFR3A KCNA1 SLC17A6 ATP6V1E2 ATP1A1 PGM2L1 PTMA CLTA ALDOA BSCL2 ATP6V0C RP11-20I23.1 FKBP1A NSF TUBB LILRB1 AC244489.1 RPL21 GTF2H2C_2 RAB3B\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "cortical layer 2-3 excitatory neuron A" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: RAB3B RP11-111M22.2 SNAP25 MT-CO1 ENC1 RTN1 ATP1B1 PNMA2 MT-CO2 MAP1B CHN1 SYTL2 TUBD1 MT-CO3 SCN3B PRKCB RTN4 COL5A2 GAPDH SYT1 CALM1 CALM2 YWHAZ RTN3 TUBA1B BIRC5 ATP1A1 CADM2 OXR1 MT-ATP6 OR6D1P ZNF385D RP11-219A15.1 SCN1A ACTB NGEF PRNP MT-ND4 PPP3CA TSPYL1 GPM6A FAIM2 FGF12 GHITM MT-CYB PRKCG HMGB1P8 THY1 ITM2B PSD3 NAPB LYNX1 SPARCL1 HSP90AB1 DPYSL2 SLC35B1 NECAB1 TESPA1 MT-ND2 NRGN PLCB1 NR1I3 SERINC1 MGST3 SLC8A2 VSNL1 CDH8 TRIM37 KIF21A TUBA4A NSF CFL1 HSPE1 NDRG4 TMSB4X STMN2 COX6C RASGRF1 NGFRAP1 C6ORF141 MDH1 HSP90AA1 RAB1A C9ORF16 ITFG1 NDFIP1 CDC37 MSMO1 NDRG3 ANO3 RPL15 GDA BEX1 YWHAB APBB1 VAMP2 ONECUT2 TMEM130 DYNLL1 YAF2 TUBA1A ZBTB18 PCMT1 ATP6V1B2 CMAS SLC25A4 OLFM1 BRK1 CLSTN1 AP2M1 PTPRN STXBP1 CCK PGAM1 COL5A3 NRCAM CYFIP2 NAT8L ENO2 HOMER1 AC244489.1 ATP6V0E2 CARTPT BSCL2 ALDOA CFH PGK1 ARFGAP2 KIF1A BAI2 EXTL2 ATP5J2 WDR4 ARPP19 CDK5R2 TMEM14A PGM2L1 PINK1 NARS LINC00087 TPT1 PSMD12 MED10 YWHAH TPPP ATP5A1 MRPL20 ATP6V0B MFN2 BCAP31 CDKN2AIPNL SNX10 PPIA ATP5B SRP14 SEZ6L2 CX3CL1 KCNAB2 AC010731.4 LHFP C1ORF115 RAPGEF5 ATRN LINC01296 DIRAS1 KLC1 PCSK1 SAP18 ACOT7 NDUFB11 PJA2 MAP2K4 LZTS1 RABAC1 PCDHA10 MAPK1 RHOA PEX5L EIF1 RASGEF1B NUAK1 PTPRN2 ITM2C SNCG PTPRS ADAMTS9 MTRNR2L12 TMEM151A HSPA8 SLC7A1 SSBP3 PTK2B NHP2 IPCEF1 AP2B1 LGALS1 SLC39A3 ACTC1 ESYT1 EPHB6 GAP43 CAMK2G C14ORF132 RPS4X KRAS SCAMP5 SUMO1 PDE1A TCEAL2 CAMK4 TM2D3 NDUFS5 LDB2 MT-ND1 TSPYL4 SSTR2 ASAP1 ENSA TBR1 ZFAND5 YWHAG CISD1 GPX4 CD63 ATP5I MTCH1 OPCML ADD2 STUB1 RPS3A CALB1 COX17 INSIG1 PGRMC1 TBCB DSTN LANCL1 ATP6V0C CD59 RNF208 UBA1 TOMM7 LMO4 HMP19 NDUFA5 MANBAL HOPX ATP5G1 PLD3 MTRNR2L1 PSMB5 INPP5F NDUFA11 ROBO2 NOS2 SLC12A5 ATP5E ZBTB39 MT-ND3 TMX4 CDK5R1 LDOC1L SNN RAB7A ARHGDIG GFRA2 UCHL1 B3GNT1 GABARAPL1 NDUFA13 TPD52 STMN4 FSCN1 FAM163B CADM3 PHYHIP ADRA1D ATP1A3 CRIP2 RPL19P18 USMG5 SEPW1 CHL1 RGS4 NFIA COX4I1 CRYM WASF1 WARS TEX2 RPL17 RPL23A SGK223 PTGES3 STX1A NDUFB1 SLC22A17 RPL13 FBXL16 CAP2 ARL6IP5 ZNF365 FAM134A ABHD14A C2ORF80 ISCU ABRACL TPRG1L CALM3 ATOX1 ENOPH1 ATP5C1 RAP2A MAP7D2 CPLX2 GTF3A ENPP7P8 SUB1 CAMKK2 LIN7B GABARAPL2 AP2S1 KIF5A COX6A1 SNCB CRIM1 NPTXR RNASEK-C17ORF49 SYT4 ACTR1A ARL6IP1 HPRT1 RP11-20I23.1 EIF4A2 SLITRK1 VDAC1 OPN3 RHBDD2 PDP1 AK5 RPL32 SNCA NXPH1 BNIP3 C4ORF3 MRAS CDK14 CCT5 EFR3A RPL10A RPL39 TMEM59L NAA38 C12ORF49 PLEKHH2 TMEM117 MAPRE2 ARF1 BANF1 TSPAN7 UBC ATP5J CLPTM1 TRPT1 UQCRH PEBP1 PODXL CETN2 APLP2 PFKP FTH1 EDF1 CCDC25 UBE2N SPRYD3 RAB11A WSB2 NDUFV1 PPM1A PIN1 SMAP2 RELL2 GPR56 MRPL51 REEP5 COX5B RPH3A EGFL7 NELL1 IDS NGRN SKP1 PCDHGA5 PCDHGA6 PCDHGA10 TBC1D15\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "cortical layer 2-3 excitatory neuron A" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: RAB3B SYT1 MT-CO3 MT-CO1 CFH MT-ND4 MT-CO2 CHN1 CABP1 GTF2H2C_2 PRKCB RP11-111M22.2 SNAP25 ATP1A1 NECAB1 ARF3 NPTN TSPYL1 EIF4A2 MT-ND2 MTRNR2L12 PEBP1 CLU CCDC184 SCN3B PPP3CA MT-ATP6 KLC1 MAP1B PSAP STXBP1 HINT1 ENC1 NCAM2 YWHAB OLFM1 CAMKK2 NR1I3 OR6D1P DYNLL2 MAP7D2 TUBD1 SFTPD ACTB ANO3 RP11-454L9.2 RAB6A SPOCK3 NGRN WNT5A DLD CTNND2 WBP2 GSK3A KIFAP3 EIF1B CLTC SCN1A PRKCG C16ORF93 GRIN1 GRIN2A ITPR2 RTN4 WFS1 ATP6AP2 VSTM2L ENSA RHBDD2 TSC22D1 CAPZB EIF1AX PAK1 MORF4L1 PCDHB4 UQCRH RPH3A SYPL1 TMEM59L ATP6V0E2 SMS FAM3C ONECUT2 MAP1A CD24 TMOD2 RP11-631M6.3 RORB NPTX1 MAP4 RAD23B TSPAN7 CALM1 TMSB4X IDH3A NDRG4 SERPINI1 RPS28 HTR2A PTK2B SEPW1 ARL4C LDHB CORO2B CHMP4B BCAS1 VDAC2 NEUROD1 PARP4 GOT1 B3GNT1 MT-ND5 CNTNAP5 PTPRN2 NPTX2 SLC25A4 IDS NCEH1 ATP1A3 SNAP91 FBXO2 DCLK1 BEX4 CFL1 NEFL COL6A1 SYNPR SSBP3 RPL38 ISCA1 KIF21A HOMER1 PRNP VSNL1 MRPS28 KCNAB2 CHCHD2 GAP43 DKK3 PJA2 SCN1B ARPP19 MAP1LC3A UBC KCNC3 MTATP6P1 SLC12A5 NRCAM SHD SYNJ1 PSMB5 KCNMB4 TRMT112 ACAT2 ATP1B1 LINC01296 SPOCK2 H2AFZ CALCRL MTRNR2L1 RPL31 OPN3 PHPT1 ATP6V1G1 PSMD2 SYN2 ASPDH YWHAG MT-CYB ITM2B ANXA7 C18ORF32 SNN TPI1 ATP2A2 SLC7A5 GLRA3 TOLLIP MBP ZBTB20 DAW1 NAPB NAPA TUBA4A ADSS IGSF21 ARL8B NEGR1 PCDHGA6 BSCL2 MTRNR2L6 PSMC1 PLEKHD1 HNRNPA1P40\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "cortical layer 2-3 excitatory neuron A" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MT-CO1 MT-CO3 MTRNR2L12 RAB3B MTRNR2L1 NFIA DPYSL2 CORO2B PREPL STXBP1 VSNL1 NPTXR ID2 GPM6A AP1S1 GOT1 RTN4 TBC1D15 ZNF385D CADM2 STK39 REEP2 BSCL2 RRAGA ENO2 RLIM ENC1 GABRA1 MT-ND1 YWHAZ ATP1B1 THY1 RTN4R PEX5L FER1L4 CHL1 ROBO2 OLFM1 CHN1 KRAS KCNC2 WASF1 PPP3CB UQCRB MTCH1 CA11 SYT11 CALM1 LINC00087 TMSB10 ATP2B4 VGF PLEKHD1 PPP3CA ATP9A GPR98 LDB2 OPA1 PSD3 SCN3B NR1I3 SLC22A17 STUB1 FBXL16 PLCB1 CAPZA2 MTRNR2L6 SLC24A2 CKB EIF1AX PTPRN MT-CYB HSPB1 CLSTN1 MT-ND4 NPTX1 CABP1 APLP1 TMEM59L SLC12A5 CPNE8 MAPK1 SNAP25 RAPGEF5 EDF1 NDFIP2 GPX4 MLLT11 SCD5 PRNP PDP1 SLC25A4 ITM2C MED31 HSP90AB1 DNAJC5 MRPS21 TESPA1 NGEF CAMK4 ATP1A1 POU3F1 MT1X GRIN1 ATP2B2 SERF2 MYOM2 TGOLN2 GTF2H2C_2 PCDHGA10 PCDHGA6 PCDHGA5 DNAJC21 TF\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "cortical layer 2-3 excitatory neuron A" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MT-ATP6 MT-CO1 MT-ND1 MT-ND4 MT-ND3 MT-ND2 MT-CYB MT-CO3 CREG2 SNAP25 RTN3 MTRNR2L12 CHN1 SYT1 EPHA6 NEUROD2 PHYHIP MT-ND5 NDUFA13 NR1I3 NDRG4 MED10 TM2D3 LDB2 TUBA1B COX7C GPR158 PAFAH1B2 RHOB TSC22D1 NAPB GAPDH GDI1 HOPX KIFAP3 HK1 CSDE1 ARL6IP1 NPTX1 CDK5R1 PPP2R2B RPL21 MAP4 TMEM130 THSD7A ATP2B4 PHYHIPL VSNL1 RP11-111M22.2 KLHL5 KIF1A PRNP CDH8 PTCHD4 HSP90AA1 PSMD12 RGS4 HSP90AB1 SLC17A7 RAP2A NECAB1 FKBP8 MDH1 MT-CO2 SLC24A2 APP SYTL2 MTRNR2L8 ATP2B2 RTN4 ELMO1 DKK3 CTNND2 ATP5J2 GUCY1B3 KCTD12 SPARCL1 TBR1 ALS2CR11 PPP3CA EPHB1 MAPK1 MTRNR2L1 SLC38A11 PPP1R7 MTRNR2L6 NSF KLC1 GTF2H2C_2 BIRC5 TF\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "cortical layer 2-3 excitatory neuron A" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MT-CO3 CHN1 MT-CO1 SYTL2 MT-ND1 SNAP25 MT-ND4 RTN3 MT-CO2 CALM2 HSP90AA1 MT-CYB MT-ND2 BASP1 ATP1B1 SYT4 GPM6A SLC12A5 ATP1A1 PRKAR1B RTN4 PTK2B CALM1 MTRNR2L8 ATP2B2 PRKCB RP11-111M22.2 OR6D1P MT-ND3 GDI1 MTRNR2L12 RAB3B OLFM1 FAM127A NGFRAP1 ATP2B4 WASL SYT1 BIRC5 GRINA NECAB1 PSAP ATRN FTH1 CABP1 MAP1B VSNL1 NRCAM HMP19 DKK3 NOS2 ONECUT2 SNX10 OCIAD1 MTRNR2L1 PKM BSN PEBP1 CCK RPS15 PRKACB HTR2A TSPYL1 ATP6V1C1 CADM2 STXBP1 KIF5A MT-ATP6 ATP5B ENC1 APLP1 NCDN APP MAPK8IP2 PPP3CA LINC01296 HSP90AB1 RPL13A CDH8 ARFGAP2 UBB PDGFRB PNMA2 GCHFR SLC25A4 GABRA1 PARM1 ID2 FXYD6 NDFIP1 LPPR4 KIRREL2 RBX1 NEGR1 SIRPA RPL8 CSDE1 PPTC7 GMFG THY1 CTC-575D19.1 AES HPRT1 DNAJB6 STMN3 PINK1 C14ORF132 SPTBN1 GOT2 MT-ND5 PREPL MT-ND4L KCNK1 YWHAB ANXA7 RPL32 CLU EIF1AX SLC17A7 EIF4A2 ATP6AP2 EFHD2 C14ORF2 PSD3 CDC42SE2 TPRG1L FAM134A ATP6V0B PDP1 MTATP6P1 DCLK1 NIPA1 ETV5 ARHGDIG TMSB10 NDUFA5 KCNA2 PGD OPRM1 GABARAPL1 PPP2R4 TUBA1A COMTD1 SLC8A2 NEFL SCN4B YWHAG JUN UBE2N ARL6IP1 PSMC3 ASB13 CHGB CTNNB1 HAPLN4 UQCRH SNRPN GHITM BCAP31 REEP5 DNAJA1 NARS ATP5A1 TMOD2 UQCRB CERS6 CAPNS1 DYNLL1 PRNP UBE2V2 PJA2 ANO3 SLC38A1 ACOT4 HCN1 PIK3R1 NGRN RAN FAT3 NR1I3 SNCG CHL1 GLIPR1 HMGCR NCALD MRAP2 RAB11A TPD52 CNTN1 VPS35 FKBP1A GRIN2A UQCRC2 CBX6 ATPAF1 UBC UHMK1 SLC24A2 TOMM20 TAGLN3 SULT4A1 NDUFB7 CA4 TOLLIP EPHB6 PEX5L TSHZ2 AP3S1 SRP14 PRPH2 CD99L2 TMA7 ATP5G3 SYN2 MORF4L2 NEFM CDC37 ATP2A2 HOPX TRIM37 SYT13 ATP6V1E1 PCDHA4 MORF4L1 ENO1 GNB1 TCEA2 PEF1 ZNF503 CALM3 HS6ST3 PRDX5 CACNA2D2 CBLN4 FAM96B LMO4 SGK223 MAST3 SYN1 RPL31 SLC22A17 PCMT1 NMNAT2 RGS4 RAB6A RAP2A SLC35B1 PRDM16 FBXL16 ATP9A ATP5F1 PTGES3 CLTC CAPZA2 SLC39A10 SRM MRPS21 TMSB4X CDH22 RPS12 TKT SMIM13 USMG5 RPL41 BSCL2 IDS ALDOA FAM3C RP11-219A15.1 GTF2H2C_2 RPL17-C18ORF32 RPL17\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "cortical layer 2-3 excitatory neuron A" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: RP11-219A15.1 SYT1 MT-CO1 PIK3R1 MT-ND2 MT-ND1 MT-CYB MT-ND4 PTK2B LMO4 ATP6V1B2 ACTB PREPL THSD7A ATP1B1 SNAP25 MT-CO2 RPS3A CADM2 SARAF CDH13 VSNL1 OXR1 SYNGR3 NEFL HPCA TF HOMER1 TMEM179B ADAM23 RELN PSMD2 MAP1B PTPRN OLFM1 HSP90AB1 MT-ATP6 CACNG3 SMS MAP4 MT-CO3 PPP3CA RP11-111M22.2 CDK5R1 PAFAH1B2 GPM6A SLC39A10 CEND1 ENOPH1 CREG2 FKBP1A CCDC25 BTBD10 CPLX2 EPHA6 CCK CYFIP2 VEGFA MAPK1 CLIP2 CCDC141 CDC37 NPTX1 SLIT3 NCDN SERPINI1 SNRPN CLSTN1 ELAVL4 RPL37A MZT2B STMN1 FXYD7 ATP6V0D1 GPR158 MAPK8IP2 RTN3 DGKG CBLN4 RPL13A ITPR2 STXBP1 EIF1AX C2ORF80 GABRA5 CDH8 PHYHIPL CALM3 CTBP1 CABP1 KIF21A KCNAB2 PPP2R2C PNMA2 RPS28 UBE2E3 CHN1 CSDE1 RAB40B CRIP2 GNAQ LMO3 MAPRE2 SYN2 ID2 CALM2 MT-ND3 CLDND1 GNB1 TSPAN7 TESPA1 SGCD SYTL2 RAB3B ZNF385D TBC1D15 DNAJC21 GPR98 MTRNR2L8 TMEM191A IDS MTRNR2L12 HNRNPA1P40 AC244489.1 PLEKHD1 NR1I3\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "cortical layer 2-3 excitatory neuron A" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: SNAP25 CHN1 RAB3B SYTL2 MT-CO3 MT-CO2 NECAB1 MT-ND3 MT-CYB MT-ND4 BIRC5 RTN4 ENC1 MTRNR2L1 UCHL1 IDS CADM2 NR1I3 NPTN MTRNR2L12 YWHAB PRKCB YWHAG CALM1 MT-CO1 CALM3 CALM2 TOLLIP KIFAP3 MAPK1 PTK2B GPM6A MAP1B YWHAQ TBC1D15 PPP3R1 RPS2 EPHB6 PHYHIPL ARF1 YWHAZ SMIM13 SCAMP5 RP11-111M22.2 MT-ATP6 NUAK1 FTH1 CDK5R1 RAB11A FAT3 MT-ND2 ARL8A MT-ND1 TUBD1 ADAM23 ID2 REEP5 NDUFV1 APP ISCU ATP6V0B TSC22D1 BASP1 STXBP1 PLCB2 LMO4 THY1 PIK3R1 NGFRAP1 CHL1 MAST3 RHOB PI4KA ATP1A1 APLP1 AKAP12 LYNX1 SLC9A6 CYC1 TLE4 GLIS3 PPP3CA LIMK1 CSDE1 BEX2 RPL12 SERPINI1 MAPRE3 RAB6A CDH8 NUDT4 COL12A1 LCP2 SALL2 ACTB MTPN RTN3 CX3CL1 VDAC1 YWHAH ATP6V0D1 MTCH1 SPCS2 TLN2 WBP2 SHARPIN WDR47 CDH13 TOMM22 C3ORF80 COX8A AP1S1 HOMER1 PDE1A SERINC1 CAPZA2 PRKACB TSPYL1 SLC25A22 SPARCL1 FAIM2 RASGRF2 TMSB10 TMOD2 TUBA1B CA11 TPRG1L RPL26 RPL38 TCEAL2 LHFP GPR158 SLC25A11 CBLN4 RELN PPP1R7 CTXN3 NDUFA5 REPS2 PCDH19 NAP1L2 CLU CDH22 CREG2 ATP6V1A GABRA5 MTX3 MTATP6P1 MTRNR2L8 C9ORF24 STMN2 KCNA1 ACTR10 ELAVL4 HCN1 ZBTB18 VAMP2 RPS28 RPL31 TSPAN7 CNGB1 NDUFB11 TERF2IP SNRPN HSD17B14 ANAPC11 PRKAR1A ATP5E GSK3A ATP6AP2 MDH1 ATP1B1 RORB PDP1 RAB40B ARL6IP1 NEFL OPN3 SSTR2 RPS27A PGM2L1 MSMO1 NCAM2 GNB1 ATP5B C1ORF95 KIF1A GRINA KCNAB2 NDUFS5 SLC39A10 C1ORF52 AAMDC EFHD2 NPTX1 BNIP3 STMN1 KIF21A GHITM GOT2 ISCA1 KCNA2 CRYAB ATP6V1G1 PRKAR1B FIGN MLF2 PREPL PGRMC1 DCTN1 ARL1 SPTBN1 COX4I1 STMN3 WASL CKB SEPW1 CTNND2 ATP2B2 RPL11 EIF4A2 RPS6 MT-ND5 STUB1 SH3RF2 USMG5 OCIAD1 MTND1P23 GPR26 GPR98 PEA15 C1ORF115 PPA1 ABCA8 NRCAM RGS4 PPP1CB VSTM2L CADM3 NDUFA12 GNAQ IPCEF1 LMBRD2 VSNL1 SNCA LPPR4 CDK17 RAB4A C14ORF2 CHMP4B PTPRN MTRNR2L6 SV2B OLFM1 TMX4 SLC26A10 TAF7L NAP1L3 RP11-382N13.1 STK31 KCNMB4 PPP2R2B ZMAT2 EGR3 TPPP RAB6B ALDOA NSF SKP1 AC244489.1 ATP6V1G2 TUBB CYB5R3 ZNF385D\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "cortical layer 2-3 excitatory neuron A" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MT-CO3 MT-CO2 GPM6A RTN4 MT-ND4 MT-ND2 MT-CYB SNAP25 MT-ND3 PPP3CA CKB PREPL MT-CO1 RPS12 UQCRB RPL36A NECAB1 PRKACB ARPP19 DPYSL2 PNMA2 RPL37A CALM1 ITPR2 CLSTN1 PCBP1 PRNP SERINC1 RP11-111M22.2 TLE4 RTN1 PIK3R1 EIF4A2 ENC1 PTK2B ENO2 MT-ND1 CALM2 RPS28 BIRC5 SERPINE2 RAB2A PSD3 C19ORF70 PSMB5 FAIM2 SLC22A17 CDK5R1 MT-ATP6 PDE1A APP ATP5J ZFAND5 ASAP1 SERPINI1 RPS3A COX6C GDI1 RPL11 THY1 CFH TMSB10 OXR1 MIR3916 CHL1 SERF2 NPTN SUB1 MAPK1 NPTX1 ANO3 LINC01296 SNCA LMO4 ARF3 HINT1 USMG5 YWHAB MTATP6P1 FXYD6 GHITM MAP2K1 RPL32 ATP2A2 PJA2 ARL6IP1 HCN1 TAGLN3 PSMD2 SYTL2 ESCO2 RAB3B RP11-219A15.1 ATXN10 CA10 PAM PSAP CA11 NDN TMEM130 NCDN CTSD DYNLL1 ARL6IP5 BAI2 TBCA RPL23A C14ORF2 IDS LDB2 JAKMIP1 BLOC1S1 PRDX3 RAB11A NUDT21 PCMT1 KCNAB2 AES HK1 ATP6AP1 PFN2 YWHAQ FMO5 ATP5I ZFHX4 KCNK1 SUCLA2 YBX3 MAP1B REEP2 NDFIP1 SCN1B NIPA1 SKP1 FGF12 GAPDH RELL2 LMBRD2 TEX2 KIF1A PDP1 SLC25A4 PPIF SPOCK3 CHN1 CDC37 LMO3 EPHA6 TUBA1B CLIP3 C6ORF1 SLC1A2 ADAM33 TPT1 ATP1B1 SKAP2 RAD23B STMN4 TERF2IP EPB41L3 RPS27A TTN SLC12A5 ENSA ATP5H RTN3 OPCML YWHAG RPL38 SSTR1 YWHAZ SNN TSPYL1 PSMB7 SSBP3 HOPX TCEA2 PCDH17 CAMKK2 SLC39A10 TMSB4X NPTX2 ACTG1 PLCB1 FUNDC1 SYNJ1 ELAVL4 KMO REEP5 MAP1A NSF AZIN1 GDA ATP5J2 NPTXR OPN3 BTBD10 NDRG4 RPS4X PEX5L TMEM35 PFKP PHYHIP SARAF CADM2 LPPR4 CADPS2 PRKCB ATP5F1 OR2M4 DNAJC5 SLC9A6 NELL1 PAK1 DMTN GABARAPL1 PMEPA1 IGSF21 BANF1 BSN SMS HSP90AA1 OLFM1 CYFIP2 ACTB PPP2R4 UBC FAT3 EGFL7 KRAS NGFRAP1 DKK3 CDK14 CSDE1 EXTL2 PPTC7 LDHB TM2D3 PGK1 NDUFA13 ISCU PKM PTMA LAMA4 PNMA1 LRRIQ1 MYL6 GADD45B BNIP3 ATP2B2 UQCRC2 GDE1 RPL31 WASF1 TPI1 PSMD12 PEA15 RPL8 SPATA13 PTGES3 ITFG1 TMA7 TSC22D1 PLD3 MAPRE2 THSD7A PPP3R1 SELT RAB3IP RPL7 PGAM1 NUDT4 BSCL2 RPL21 PCDHA9 PCDHA4 PCDHA10 PCDHAC1\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "cortical layer 2-3 excitatory neuron A" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MT-CO3 SYTL2 MT-ND4 RAB3B MT-ND2 MT-CO1 MT-ND3 MT-ATP6 VSNL1 PPP3CA MT-CYB PIK3R1 SYT1 MT-ND1 ENC1 MT-CO2 SNAP25 DKK3 UCHL1 RPL37A CHN1 NPTN MAP1B TUBA1B RPL31 MTATP6P1 SLC12A5 TSPYL1 PREPL DIRAS2 ARPP19 SLC38A11 RPS26 SARAF MAST3 RTN1 NECAB1 CDK5R1 CALM1 DCLK1 GPM6A ZBTB18 APLP2 CLU MTRNR2L12 SPARCL1 RP11-219A15.1 BIRC5 EPHA6 NPAS3 ZFP36L1 RTN4 SERPINI1 KCNA1 TSC22D1 GABARAPL1 PRKCE ACTR10 MAPK1 PDE1A AP1S2 PCDHGA10 YWHAG YWHAB RPS6 TPD52 ELMO1 CARTPT UTRN MT-ND4L SCN1A THY1 NCDN TPPP CNTN1 FABP7 PJA2 RPL12 TLE4 OLFM1 RPL26 RPL36A DCTN1 VAMP2 FAIM2 RPS4X RPL38 PKM SERINC1 SH3GL2 SNAP91 PNMA2 SLC26A10 ARFGAP2 KLHL5 RPS15 ZFAND5 GNG2 KCNMB4 MMD DPYSL2 PSAP CALM2 RPL32 PAK1 RPL13A ENO2 F8 BRK1 ATRN SLC30A3 CKB PRDX3 RPS27A EIF4A2 ATP2A2 CNR1 STMN1 MT-ND5 CALB1 PDP1 RPS3A COX7A1 HPRT1 CAP2 PPIA PAFAH1B2 CPLX2 DYNLL2 TPT1 LMBRD2 OR6D1P PCDH8 CD24 RPS10 RPL17-C18ORF32 PEA15 MT3 CHL1 EFR3A DHCR24 MED10 NDUFA1 EID1 RPL8 ADD2 ATP5O ACTB RPL17 FKBP1A TMEM130 KIF5A PIN1 UQCRC2 ATP6V1E1 TMTC1 BCL11B GDI1 PCMT1 CTNND2 PPP3R1 PSMD8 CBX6 APP ADSS KCNC2 RBX1 ITM2C NEGR1 GHITM ANKRD30A PLCB1 PRKCB NAT8L PI4KA SPRYD3 ELAVL4 PGM2L1 MDH1 TMEM59L FAM19A1 PRKACB RPL7 LRRIQ1 ENPP2 NDFIP2 SMAP2 CDH22 CLTC HOPX ACTG1 NDFIP1 NDUFB3 SERPINE2 BEX1 SYN1 MOBP RP11-111M22.2 WASF1 WASL SEZ6L GAP43 SGCD PRNP UBQLN2 GABRA1 TLN2 CAMK2G ZNF343 GUCY1B3 BAG4 ITM2B CLSTN1 SUB1 USMG5 ANXA7 PHYHIP STXBP1 RTN3 DISC1 HSPA8 GNB1 ATP6V1B2 MTRNR2L8 UBE2E3 TMA7 GMFB COL24A1 AES SRM SUMO1 HOMER1 CALM3 CDH8 TOMM22 CA11 PCP4 BCAS2 STX1B ANO3 PPP2CA HCN1 COX6B1 CYP1B1 TM2D3 FAT3 NFIA ATP5J CDH13 DNAJC6 VDAC1 ATP1A3 CD99 ZBBX FIS1 SSBP3 DPF3 SLC22A17 C18ORF61 WBP2 ITPR2 DYNC1I1 UBE2N TSPAN7 CDC37 SKP1 TPI1 PPARGC1A CD59 FAM219A MDGA1 NPTX1 ATP6V1A RAB4A RPS28 FAM19A2 CRIM1 HMGCR APLP1 HDLBP TMEM132D RAB3A PFDN1 C1QL2 CYFIP2 AP2S1 LAMP5 INPP5F SLC25A6 LINC01296 POLR2M HSP90AA1 ATP6AP2 KCNAB2 UQCRB PINK1 CISD1 ATP2B4 CERS6 CADPS2 ARHGAP29 PDE1C DNAJA1 NDUFB2 AP2M1 EPHB6 MTRNR2L1 NDUFAF2 NPTXR TRIM37 COX7C SELT RPL3 ATP6V0E2 ZMAT2 MLLT11 ATP1A2 DYNLL1 RPL15 IDS HMP19 PSMD12 SLC39A10 CAMK4 RELL2 PGK1 MTRNR2L6 RPL18A RELN BSCL2\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "cortical layer 2-3 excitatory neuron A" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MT-CO3 MT-CO1 MT-ATP6 PPP3CA MTRNR2L12 MT-ND4 MT-CYB MT-ND1 MT-ND2 MT-ND3 CFH RP11-111M22.2 C1ORF115 PRKACB RTN3 CALM1 GDI1 SYTL2 RAB3B SNAP25 CDK14 USP5 IPCEF1 CADM2 FOXQ1 MTRNR2L8 VDAC3 RAP2A MED31 SLC25A22 OXR1 FSCN1 SLC39A10 GPM6A CADPS2 ANKRD20A11P RABAC1 MTCH1 COX8A COX7A2L RAB2A RP11-219A15.1 HMP19 RHBDD2 FAT3 SUB1 CDH8 CLSTN1 SLC8A2 HSPBP1 ATP2B4 UROS GNAQ DNAJC5 PPP1R7 GPER1 ATP2B2 RTN1 TGOLN2 CADM3 SLC38A11 B3GALT2 PEX5L ANKRD26P3 PLCB1 CDK5R1 SLC12A5 ARHGAP35 TMEM59L CLU RAB5C HMGCR GMFB SPARCL1 DEXI VDAC2 MT-CO2 SARAF DNAJC6 EID1 INSIG1 PTPRS CRIM1 PPP2R2B WASF1 NGFRAP1 TBC1D15 IDS AC244489.1\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "cortical layer 2-3 excitatory neuron A" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: SNAP25 MAP1B CHN1 SYTL2 RAB3B CALM1 RP11-111M22.2 SLC39A10 MT-ND1 ENC1 CADM2 FTH1 CLSTN1 MORF4L2 APLP2 LINC01296 CHL1 NARS SKP1 SLC12A5 FGF12 ATP6AP1 NRCAM OLFM1 MT-ND4 MT-CO2 PSAP RTN4 DCLK1 PTK2B DYNLL2 SSTR2 ATP5I GRIN2A OAT CLU PPP3R1 WBP2 PKM CABP1 SCN3B PPP2R1A RPL21 MTRNR2L12 PRKCE ATP5E ACTR1A AC244489.1 PFN2 MT-CYB SOD1 ARPP19 TUBB4B NECAB1 EZH2 NEGR1 RHOB ACTB TMEM150C MAST3 NEUROD1 CNR1 ATP6V1C1 NDUFA13 NEUROD2 SELT C1ORF115 SLC38A11 CLEC2L NPR3 WBP11 PTMA NUAK1 SNCB PEA15 CYCS HK1 OPCML NDUFB5 DNAJC6 HSP90AB1 GUK1 KCNA2 KCNA1 SPOCK2 EFR3A YWHAZ MTATP6P1 BAI2 CNGB1 GAP43 SEZ6L CCK PCDHGA10 RHBDD2 STRAP PEX5L CALM3 TMEM130 PREPL KIFAP3 KCNC3 ATP5G3 ATP5B TMEM65 TESPA1 MAP2K4 TERF2IP PRKACB MORF4L1 SEPW1 DCC FAM19A1 DSTN ATP6V1A LMO4 CALM2 CAMKK2 MT-CO3 RAB6A IPCEF1 ARL6IP1 CRIP2 MT-CO1 BCAP31 GPM6A PTPRT ATP5A1 NR1I3 TRAPPC1 LDHB NDUFB10 FXYD7 GLRA3 MAPK1 ACTG1 NGEF YWHAH SMS TEX40 UHMK1 WASF1 PRKCB ELAVL2 TMOD2 PGK1 IMMP1L COQ10B FKBP8 COX7C KITLG KLC1 RHEB COL11A1 CADM3 CARTPT FAM219A COL6A1 ATP2A2 OCIAD1 RELN PNKP SCN1A SLC17A7 EIF1B EPB41L3 EGR3 THY1 RTN3 NDFIP2 KIF21A PEBP1 HIF3A LCNL1 AES RPL26 CDH22 YJEFN3 BSCL2 UBA52 TUBD1 RAB7A SYT1 PNMA2 PPP3CA MAP2K2 PPA1 MTG1 SPRN INA RBX1 SUCLA2 TUBA1A RPS6 SERTM1 NDRG4 OPA1 GLIS3 PPP1R7 ST20 UBE2D2 PEG10 PAFAH1B2 PGRMC1 CTBP1 CHI3L1 PSMA7 ELMO1 GABARAPL1 KCNV1 NPTN ATP1B1 CAPZA2 EPHA6 MT-ATP6 DIRAS2 PRDX1 CREG2 EIF4A2 POLR3H NCALD GHITM ATP9A ITM2B ONECUT2 NGRN IDS PPIA ALDOA NSF NUDT4 TBC1D15\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "cortical layer 2-3 excitatory neuron A" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MT-CO3 MT-CO1 RAB3B CHN1 MTRNR2L12 MTRNR2L1 MT-CO2 MT-CYB TBC1D15 SNAP25 ATP1B1 SYT1 RTN1 PRKCB GRIN1 MT-ND1 MT-ND3 MT-ND4 ENC1 TUBA1B IDS MT-ATP6 CREG2 CPLX2 HNRNPA1P40 CABP1 RP11-111M22.2 RTN3 MTRNR2L8 BIRC5 APP ZNF385D MTRNR2L6 SUCLA2 SPARCL1 BSCL2 PLCB1 GABRA1 STMN2 EPHA6 RPL37A NAT8L TMEM59L YAF2 NECAB1 GDI1 ATP1A1 CLSTN1 VSNL1 EIF4A2 MT-ND2 PIK3R1 NAPB NR1I3 CCK MRPS21 ZFAND5 SERPINE2 STX1A RORB ENO2 PPARGC1A LANCL1 FTH1 ETS2 ATP2B2 SPOCK2 NRCAM TSPYL1 YWHAH SCN3B TMSB4X GPM6A TMSB10 RAB6A CPE APLP1 CKB RPL38 SLC12A5 KCNK1 RAP2A CDK5R1 SIRPA SNCB YWHAG ELAVL2 ATP9A UBE2N RTN4 VDAC1 SERINC1 DNAJA1 PNMA2 NMNAT2 BSG CALM1 SYT11 RAPGEF5 TMEM130 ARL6IP5 MAP1LC3B CYFIP2 PPP2CB PPP2CA CLU WASF1 RNF11 CALM2 NPTX1 DPP6 PHYHIP SLC9A6 EGR1 SLC24A2 PPP3CA CADM3 AK5 BASP1 GRIN2A NGFRAP1 OXR1 ZBTB18 TCEAL2 AC244489.1 RP11-219A15.1 SGCD FAM127A MTATP6P1 SRP14 LDB2 KCNV1 NDUFC1 ITM2B PREPL EIF1 MAST3 THYN1 LRRIQ3 LINGO1 CDH8 INHBA SCN1A MGST3 DYNLL1 C2ORF80 PRKCE ATP6V1E2 LMO4 ETV5 GNAQ KIF1A PTPRN DCLK1 CMAS CNTN1 EIF5A2 RAB6B PCSK1N UQCR10 MT-ND4L KLHL5 SARAF CLIP3 HMGCS1 PSAP SLC8A2 TOPORS-AS1 MRAP2 NDFIP2 PTGES3 REEP2 ERH COX4I1 IDH3A RPS2 VAMP1 PLOD2 AURKAIP1 PGRMC1 FAT3 PRNP ITM2C SERINC3 TPPP CDC37 ATP6V1B2 ATP6V1C1 TMEM158 GHITM DKK3 STMN4 GUCY1A3 NCDN MAPRE3 KCNC2 NHP2 CADM2 ARPC4 GAPDH AP1S1 RPL13A SNX10 RPL23A GPX3 UQCRH PPP1CB PNKP MSMO1 MRPS7 CRIP2 TPT1 RPL8 RPS28 HSPBP1 NPM1P30 TMEM65 LPPR4 YWHAB SYN1 REPS2 RPS27A PEPD RASGRF2 SEC61G VSTM2A CHRNA5 RPH3A PLD3 TPD52 HCN2 PPTC7 SRM MAPK1 CCDC25 EDF1 TMOD2 SLC17A6 MT-ND5 PKM UQCRC2 AKAP12 NPTN INPP5F STMN3 SMIM12 BCL11B TMEM258 CHL1 OST4 LAMTOR1 FAM3C NUAK1 DYNLL2 MAL2 PPIA MFSD6 MRPL55 CAMK4 HINT1 TPRG1L MDH1 NCAM2 CSDE1 CLGN FXYD6 ALG3 D4S234E NDUFB10 SLC39A10 PCDH19 FAM84A MAP1B PAM ATP6AP2 SNRPN GSKIP PPP3R1 SLC1A2 MORF4L2 FER1L4 EFR3A CDS1 NEGR1 SV2B CAMKK2 TM6SF1 SULT4A1 COX7B WDR47 MAP2K4 RAB40B CYP2R1 RPL36A TSPAN7 CBX6 NIPA1 GMFB PHYHIPL YWHAZ STMN1 BAI2 ZNF365 PRKAR1B PDGFRA RPL41 GNG3 RCAN2 SLC22A17 MYO1B COX14 TAGLN3 SUMO2 TLN2 COX7C DEXI ATP6AP1 CAPZB ATP5G2 CMTM5 RELN RPL32 ATP2A2 DYNC1I1 SLC30A3 ANO3 UQCRB NKIRAS1 ATP5F1 PSD3 TMA7 EIF4G2 PTMA HSP90AB1 LRP4 MRAS TSPYL4 PRKAR1A ARL6IP1 LINC01296 CLTB POMP SYT5 CYP27A1 MRFAP1 TOMM7 GUK1 UBA52 SLC7A8 CERS6 COL12A1 APBB1 ARF1 IQCK VAMP2 IQSEC1 YDJC SPTBN1 PEX5L WBP2 PRDM8 TMEM141 ATP6V1A ARF5 RPL13 SERF2 EPHB6 ATP6V1G2 CYB5R3 PCDHA4 PCDHA10 PCDHA9 PCDHAC1 PCDHGA10 PCDHGA6 PCDHGA5\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "cortical layer 2-3 excitatory neuron A" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MT-CO1 MT-ND4 MT-CO3 MT-ATP6 SNAP25 MT-ND2 MT-ND1 SLC39A10 MT-ND3 MT-CYB PRNP RTN4 TSPAN7 TF ZNF385D PPP3CA CALM1 PIK3R1 ARHGAP35 AK5 MTATP6P1 LMO3 MT-CO2 ZFAND5 DCLK1 PCDH8 PPIA HSP90AA1 TSPYL1 RP11-111M22.2 SPCS2 GRIN1 NEGR1 RAD23B PKM MTRNR2L12 MT-ND5 ACTB APLP2 RAB3B SYTL2 NR1I3 ARL6IP1 CNTNAP5 PGK1 FAM96B SYN2 SYT13 SV2B CDH13 SEPW1 BDNF HMGCR CD63 PPP3R1 SYT1 PCBP1 PREPL CHL1 C2ORF74 ATP1A3 SCAMP5 ATP6AP1 KCNV1 BIRC5 SPTBN1 ATP1A1 NEUROD2 TCEA2 ATP2B4 RPS12 PINK1 ATP6V1C1 ATRN EVI2A RPL13 KIFAP3 BSG APP CADM2 TOMM20 CLSTN1 FAM163B DIRAS2 HK1 RP11-219A15.1 VAPB CABP1 DPYSL2 PFN2 ZNF208 SCAND1 IPCEF1 PTPRN AES CAPZA2 DPP6 STMN3 MAP1B NPTN CHGB NELL2 CAP2 TMEM35 ELAVL4 NRCAM LDB2 TOLLIP ENC1 HSP90AB1 KCNK1 MT1X THY1 GAPDH TTN PGM2L1 NPTXR PRKCB SLC17A6 LMO4 SLC17A7 CLU NUAK1 KIF21A LRRIQ1 PEBP1 PJA2 MTRNR2L1 UCHL1 PRKD2 NDUFA13 ARF3 PHYHIP YWHAG HMP19 YWHAZ NDRG4 THSD7A TMEM160 CDK17 TMX4 STX1A PSD3 KIF1A TCEB1 PEX5L GLDN NEFH ADAM23 HNRNPA1P40 PLEKHD1 MTRNR2L6 RPL36A PCDHA10 PCDHA9 PCDHAC1 PCDHA4 PCDHGA5 PCDHGA10 PCDHGA6\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "cortical layer 2-3 excitatory neuron A" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: RAB3B SNAP25 BIRC5 ZNF385D RP11-111M22.2 CABP1 NR1I3 ATP1B1 CALM2 GPM6A CHN1 PRKCB ENC1 SYTL2 CLU RTN4 RTN1 KLC1 SYT11 SEPW1 PTK2B CCK SUMO1 MT-CYB NGFRAP1 TMA7 NFIA SERF2 RTN3 RPL7 TOMM20 FXYD6 TPT1 MT-CO1 CKB OXR1 SUB1 CADM3 ARF5 EPHB6 YWHAH NDUFB2 AC244489.1 OR6D1P HNRNPA1P40 ESCO2 GRIN2A CALM1 TUBA1A OCIAD1 PRKAR1B NPTX2 NRGN CA11 EHD3 GAP43 RAP1GDS1 UBL5 SLC12A5 PPP3CA HSP90AA1 NDUFAF2 HSP90AB1 ITPR2 HS6ST3 MGST3 NRCAM PPP3CB BAI2 RPL10A UQCRQ RELN GDI1 RPS15 ELAVL2 NUTF2 ENO2 CA10 DMTN VPS35 REEP5 BRK1 KCNV1 TMSB4X RASGEF1B CRYM HOMER1 SYT1 PPP2R2C ATP5G3 C1ORF56 NDUFC2 SIRPA CHL1 PSD3 ARL6IP1 THY1 MT-CO3 ARPP19 RPL37A BNIP3 ATP5J RPS3A APLP2 TPD52 RAB6B ATP6V1A PPP1CB RPL31 INA PIN1 TMEM59L KCNA2 RAP1GAP2 DKK3 ATP6V1B2 STMN3 ATRN SCN3B YWHAZ RAB11A BEX2 NDFIP2 OPN3 VDAC2 RASGRF2 NEGR1 PEA15 CNTN1 KCNC3 RPL17-C18ORF32 RPL17 PGM2L1 ATPAF1 STMN1 CAMK4 OPA1 NDUFA1 BEX4 CREG2 APLP1 TMEM144 PPP3R1 COPS8 MPPED1 NCKAP5 MTCH1 CTNNB1 KIF1A LUZP2 MT-ND4L DPYSL2 SPOCK2 TPPP RAPGEF5 DCTN1 ATP6V1C1 NAPB PEBP1 BEX1 NRN1 PLD3 MT-ND3 SH3RF2 RGS8 PET100 AP3S1 PTPRS TENM1 PDGFRB RPS12 SERPINE2 SLC7A1 TRAPPC1 GPNMB LZTS1 ARL6IP5 OLA1 C1QL2 TLE4 ARHGAP35 MYO1B C14ORF2 MT-ND2 TMEM147 TESPA1 FGF12 MDH1 SSTR2 HSPB3 DNAJC5 EDF1 TMEM151A CBX6 THYN1 PGK1 NECAB1 MRPL47 NGRN DCDC1 PRELID1 STUB1 COX6C CYCS IPCEF1 AURKAIP1 NDUFA4L2 RHBDD2 CYFIP2 KCNMB4 OLFM1 BSN ATP1A3 MAP4 UBE2N SLC38A1 CYP26B1 GUK1 ATP6V0E2 VAMP2 CALM3 ACOT7 TMEM150C POLR2I CLTA PRKCE NTNG1 STMN2 DYNLRB1 FAM134A RAMP1 SYNJ1 C1ORF52 SERINC1 CTNND2 DYNLL1 NDUFA11 COX7C PCDH8 ATP5B PVRL1 TPRG1L PNKP UROD GADD45GIP1 OAZ1 CTBP1 ADAMTSL1 NDUFB10 AK5 TMTC4 IGSF21 ITM2B STXBP1 ATP2B2 NDRG3 FXYD7 PPA1 COX4I1 CADM2 CRH RPL26 CCDC74A INPP5F PHPT1 LDB2 MT3 SELT PCDHGA5 IQSEC1 HDLBP ADCYAP1 MORF4L2 ARHGDIA UBA52 RAB3A CSDE1 YWHAQ RANBP1 CYC1 ATP6AP2 MFGE8 RAB2A MT-ND5 SLC25A22 ANO3 MAPRE2 FAIM2 FTH1 PHYHIPL CRIP2 CDC42SE2 PNMA2 BSCL2 BCL11B SLC39A10 EPS15 COL6A1 PEX5L DUSP6 HMGCS1 ACTB LL0XNC01-16G2.1 TMEM155 YWHAB GAPDH SERPINI1 CLIP3 SLC30A3 GNAQ HTR2A LINGO1 TMEM11 CAMK2G NUDT21 LMO3 LMBRD2 SPTBN1 NAP1L3 SARAF LYSMD2 TOLLIP CDH13 HCN1 MYL6B MPC2 CBLN4 SLC38A11 UQCRH HPX NAT8L RAP2A SH3GL2 SCN1A TUBB4B NCDN FKBP4 TOMM7 GHITM UROS FAM96B UQCRB CDK17 RGS4 MRPL33 CEND1 POLR2M CDK5R1 LMO4 AZIN1 RCAN2 TRIB2 SKP1 ATP6AP1 KCNAB2 COL6A6 DDN MAP1LC3A TRPV2 ALDH5A1 PGAM1 NELL2 NPTXR PREPL MIEN1 ADD2 TMEM164 RABAC1 PRKACB AIMP2 PTMA SNCA RPL35 SLC17A7 KCNA1 TSPAN33 PSMB5 MT1X FTL ARL8B PPIA RP11-20I23.1 RNASEK-C17ORF49 ATP6V0C IDS NSF ELMO1 ALDOA RPL41 ATP6V1G2 RPL21 PCDHA4 PCDHA9 PCDHAC1 PCDHA10\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "cortical layer 2-3 excitatory neuron A" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: RAB3B SNAP25 MT-CO1 SYT1 CALM2 CHN1 MT-CO2 RTN4 MT-ND4 ARPP19 ENC1 CALM1 TSPYL1 RP11-111M22.2 MT-CO3 SERPINE2 MT-ND2 RTN1 VSNL1 FTH1 AK5 CLU TSPAN7 BEX1 CLSTN1 SLC39A10 CCK APP SERINC1 PLD3 PKM PRKCB GAPDH RTN3 PRNP APLP1 ACTB PSD3 NRGN CDK5R1 FXYD6 TESPA1 CALM3 NPTN C14ORF2 PIK3R1 CREG2 VAMP2 USMG5 EIF4A2 OLFM1 TMSB10 ARL6IP1 SCN3B TCEB2 TUBA1B RELN CKB BRK1 RPS28 DPYSL2 THY1 ATP1B1 SLC12A5 NDFIP1 ITM2C MT-ATP6 YWHAG RAN GDI1 C16ORF13 OCIAD1 CAP2 MT-ND1 RPL31 MAP1A PTK2B MAP1B CPE PRKAR1B NRCAM GRIN1 RCAN2 PPP3CA NGFRAP1 NELL2 RGS4 TMEM59L PSAP HSP90AB1 IDS ATP1A1 TUBA1A OR6D1P ZBTB18 C1D STMN2 DCLK1 APLP2 SYNGR1 RPL41 PRKAR1A SYT13 PGK1 DPP6 ATP5E MTATP6P1 ADD2 MTRNR2L1 MAPRE3 RPL32 PEA15 MAST3 UCHL1 HMP19 ATP2B2 SUMO2 NDUFA5 MZT1 NAP1L2 SEPW1 CEND1 TSC22D1 ATP6V1G1 CNTN1 ENSA CHL1 KCNV1 SYT4 PHYHIP JUND FAT3 RPS15 RANBP1 BASP1 RPL11 MT-CYB RAB6B HK1 ARF1 PCBP1 NECAB1 ATP5A1 LGI3 STXBP1 MYL6 SPRYD3 STMN4 CA11 RHBDD2 C1ORF115 SARAF ESCO2 ARFGAP2 ZNF385D SERINC3 MORF4L1 CYFIP2 CLIP3 RASGRP1 TOMM20 NDRG3 RRM2B TMA7 REEP2 GHITM RPS27A ARHGDIA PPIA ENOPH1 SLC9A1 PIN1 ENO2 FKBP4 MYEOV2 TERF2IP CAMK4 ATP6V0E2 SLC8A2 NDUFB2 COX6C PGRMC1 KIFAP3 ACTR1A NDRG4 GABRA1 PJA2 UQCRH COX5B YWHAH PDP1 COPG1 ARL6IP5 CADM2 MAP2K4 ARL8B LYNX1 RTN4R ATP6V1B2 SH3GL2 NCEH1 DNAJA1 ATP5B PRKCG SCN1A TMEM14A CMAS NFIA CBLN4 SKP1 SERPINI1 COX4I1 NUDT4 ATP6V1E1 SLC9A6 CRIM1 LMO3 MT-ND3 PREPL STX1B CORO2B PPP2R4 GMFB PRKACB PGM2L1 ARF3 RABAC1 SLC22A17 VDAC3 SYN2 HPS6 EPB41L3 HNRNPH2 BAD PCP4 CFL1 FAM163B SPTBN1 DYNC1I1 MAL2 PDE1A YWHAZ OXR1 BSN MAPK1 CDC42SE2 DNM3 TUBB2A SPOCK2 MT-ND4L DCTN3 SUB1 ATP6V1F RPL13 THSD7A ISCU RAPGEF5 NEGR1 NAP1L3 HMGCR COX7C TCEA2 ACTG1 RPL35 GUCY1B3 BNIP3 STMN3 ITFG1 NCALD MDH1 RP11-219A15.1 MTRNR2L6 NSF ALDOA ATP6V0C RP11-20I23.1 HOPX GTF2H2C_2 USP5 RHEB NTNG1 PRDX1 HINT1 GSK3A LAMP5 MTPN DNAJB6 NDUFB10 S100A6 MRPL33 STX1A CAPZB SLC1A2 C7ORF50 NUTF2 EIF4G2 GTF3A HHATL BAALC ETS2 CYC1 NDUFS6 MBP RAB11A UQCRQ NUP37 PITHD1 LCNL1 NUDT21 TM6SF1 PNMA2 NDUFV1 PNMAL2 TXN FAIM2 RAP1GDS1 ATP6V1C1 C19ORF43 PPP3CB ATP5G3 KCNMB4 MSMO1 VSTM2L SRD5A1 SYN1 SCAMP5 NDFIP2 MGST3 RPS4X ONECUT2 UROS COX17 FAM131B PEBP1 COX5A GNAQ WASF1 CDH8 NPTXR DHCR24 UBE2V2 RSL24D1 MAP1LC3A CRYM CTNND2 CD63 SUMO3 CAMKK2 TIMP2 MAGED1 PCDH19 MED31 TPPP SEZ6L EGR3 CRIP2 HAPLN4 PEG10 LRP1B AC011043.1 MYL6B VGF PPP1CB S100A10 DDAH1 CHMP4B CAMK2G TAGLN3 SNN PPARGC1A SLC24A2 HSPBP1 OAT C6ORF1 MAP2K1 SV2B ATP6AP1 GOT1 GABARAPL2 ATP2A2 PTPRQ SNCA PLEKHH2 SLC6A17 SPARCL1 HMGCS1 PNMA1 GPR26 LINGO1 TEX2 VPS35 NDUFB7 CNRIP1 BSCL2 MORF4L2 FXYD7 DNAJC6 DKK3 RPL38 ZMAT2 NBL1 TOMM7 GDA LSM4 CABP1 BCKDK ARHGAP35 ATP6V1A CARD16 RAB5C RPL39 AP3S1 INSIG1 BSG RAMP1 DPY30 JUN HTR2A TUBD1 MRPL20 SELT TPI1 TTN AP1S1 GPR158 NDUFB4 RHOB ARPC4 WBP2 FAM19A1 BTBD1 ERH SNX3 CPLX1 SNX17 TUBB4A LANCL1 VDAC2 RAB2A MRPS21 ZFAND5 APBB1 KCNC2 HPCA UQCR11 HS6ST3 ANAPC13 DCTN1 PLCB1 EPHB1 KIF21A SLC25A5 HSPA8 FGF12 MLLT11 FKBP1A PTPRT RPL18A YIPF3 CERS6 YWHAB OPA1 OST4 PRKD2 DYNLL1 VDAC1 FLOT2 LDB2 RAP1GAP2 PRDX5 PSMC1 OAZ1 KLHL5 UBE2E3 ADAM23 ATP5J2 RPL6 BEX2 TCEAL2 ATP6AP2 SEMA3C MRPL11 PFKP HOMER1 ATP10A SYT5 UBE2D2 CLTC MCHR2 BLOC1S1 CDK5 CTC-575D19.1 SUCLA2 PITPNA STMN1 KIF5A FIS1 PLEKHG1 SERPINF1 PNKD SYT11 BTBD10 CTNNB1 HSP90AA1 CPLX2 SCOC TBCA KIF1A RAB6A SERPINI2 ID2 NRIP3 RRAGA MIF NDUFC1 PTPRS EIF1B SLC2A1 CDK14 MTCH1 CTSD CD99L2 GPM6A TUBB4B DYNLL2 DNER CPNE4 RAB6C-AS1 RNF11 ATG101 COMMD6 TMEM147 NDUFB8 SDCBP RAP2A NDUFB3 EIF1AX SULT4A1 UBC ANO3 PSMA7 VSTM2A ATXN10 SPOCK1 NAA38 RPL37A OLFM2 WSB2 SLC25A53 ARL8A CAPZA2 UBA52 DIRAS2 PFDN4 TMEM158 NHP2 FABP7 PI4KA TMSB4X ACOT7 DGKG BEX4 METTL23 RAB3A COX6B1 SRP9 YWHAQ PDLIM5 QDPR ATRN PPP2CB RPL3 PPDPF PTGER3 MAP7D1 CRTAC1 C14ORF132 ROBO2 BRINP3 PTMA NAT8L NDUFA8 NARS CNGB1 TM2D3 KIAA1045 KCNK1 SRM GRIN2A PDCD5 REEP5 EPS15 DSTN PTPRN2 IDH3A GRINA CD59 NDUFB11 MT-ND5 NDUFA1 SNCB TMEM65 GSG1L ATP5J UHMK1 SYNGR3 EID1 MTRNR2L12 CMAHP NRF1 TBCB NPTX1 SSBP3 CNR1 TMEM130 C2ORF74 RPL36A NGRN SERF2 PSMB3 NDUFA13 RPL17-C18ORF32 PGAM1 RPL17 RPL13A AC244489.1 CFH\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "cortical layer 2-3 excitatory neuron B" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: ATP1B1 MT-CO1 SYT1 SNAP25 RAB3B CALM2 MT-CO3 MT-ND4 MT-CO2 CCK MAP1B PPP3CA CHN1 CALM1 RTN4 ENC1 RP11-111M22.2 ZNF385D NRGN SYTL2 VSNL1 SPARCL1 ARPP19 TSPYL1 MT-ATP6 OLFM1 MT-ND3 RTN1 CALM3 TMSB10 MT-CYB SCN1A ATP2A2 KIF5A YWHAB GPM6A ATP6V1B2 NECAB1 C14ORF2 SEPW1 RTN3 EIF4A2 YWHAH VAMP2 MT-ND2 PRNP PTPRS TUBA1B GAPDH STXBP1 DPYSL2 CABP1 FTH1 SLC39A10 NSF IFI6 MLLT11 NDFIP1 YWHAG CHL1 TMOD2 SERINC1 STMN2 NELL2 APP ARL6IP5 TMSB4X GDI1 MT-ND1 TSPAN7 COX7C PPIA SERINC3 SYT11 PGAM1 PJA2 PKM ATP1A1 PIK3R1 AC244489.1 NR1I3 ATP1A3 DYNLL1 HSP90AA1 SYT4 CKB PSD3 PSAP ATP2B2 KLC1 MTATP6P1 PRKCB PHYHIP UCHL1 ATP5B ACTB HS6ST3 GAP43 NEFL NUAK1 SNCA NEGR1 NMNAT2 FAIM2 SYN2 BEX1 CLU CADM2 THY1 BIRC5 CFL1 PRKAR1B DIRAS2 GABRA1 PLCB1 ATP6V1A CDK5R1 MAPK1 HSP90AB1 KIF3C NUDT4 VDAC3 STMN1 DCLK1 TCEB2 NARS MORF4L1 APLP2 TRIM37 GHITM SERPINI1 LYNX1 SLC17A7 SLC24A2 SPOCK1 REEP5 DKK3 EID1 KCNAB2 ALDOA SEZ6L2 ATP6V0C RP11-20I23.1 CEND1 OXR1 APBB1 CNTN1 PPP2R1A SKP1 RAB3C PREPL PRKACB ENO2 DHCR24 TUBA1A TSPYL4 FAT3 UBL5 INPP5F AES COX6A1 PPP3CB CAP2 VPS35 TBCA ATP6V1G1 CERS6 SARAF KCNV1 HMP19 MTRNR2L1 YWHAZ ATP5I TMEM130 PTMA TUBB2A SNCB ATP6V1F GRIN2A MORF4L2 CTNNB1 RORB FTL NAPB NRN1 FKBP1A PFN2 CPE PTK2B BSN STX1A DYNLRB1 CLSTN1 SLC12A5 EPS15 PEBP1 NRCAM HAPLN4 VDAC1 PTCHD4 TBC1D15 NPTX1 SYNGR1 NDUFC2 SPTBN1 GABARAPL1 PDP1 CRIP2 DYNC1I1 RPS28 UQCRH HK1 RPL13A NDFIP2 WASL RAB3A CDK14 RGS4 PEX5L PINK1 UQCR10 EIF1 RAB6B RAP1GDS1 TUBB4B BEX2 DNAJC6 TOLLIP PFDN1 CHMP4B SUMO2 PNMA2 APLP1 ARL6IP1 ARF1 RPL32 NCDN TAGLN3 UQCRB BEX4 ENO1 GOT1 NDUFA5 UBC AP3S1 WASF1 PGK1 RAPGEF5 MARCKS MAPK8IP2 MAP1LC3B TOMM20 SULT4A1 AP2B1 PPP2R2B TSC22D1 BAI2 GRINA MTRNR2L12 TPI1 CA11 TPPP MT3 RPL7 NDUFA4 RAB2A NCEH1 ACTG1 C1ORF56 LINGO1 VAMP1 UBA52 ATP6AP2 NDUFA1 PRDX2 TMX4 SLC22A17 COX7A2 KIF21A SUB1 AK5 MAST3 ETFB ATP6V1E1 SRP14 ONECUT2 AP2S1 SNX10 PHKG1 BAALC PLD3 ENSA MAL2 RPL17-C18ORF32 PRKCE OPCML CPNE8 TM2D3 PDCD5 MAP7D2 PSMC3 EIF1AX STX1B NPTN COL5A2 CAMK2G PSMD12 NHP2L1 HIGD1A HMGCS1 PPP1CB YWHAQ C11ORF31 CAB39 ARL8A NDUFB7 SSBP3 NCALD MAP2K4 NGFRAP1 UBQLN2 TMEM70 CAMK4 SYNJ1 WSB2 OCIAD1 D4S234E KCNH5 PTPRN GNB1 GUK1 PAK1 SPRYD3 IDS LMO4 SIRPA HSPA4 RHEB SELT NDUFB8 MLF2 TUBA4A MYRIP FAM134A ISCU ATP9A RPS2 HSPBP1 HDLBP NDRG4 NEFM RPL37A LDB2 TCEB1 ELMO1 FAM84A TTN SNN PACSIN1 DCTN1 NGEF GLRA3 CX3CL1 NAT8L EDF1 TCEA2 ATP5A1 S100A6 CREG2 CYFIP2 C12ORF49 LANCL1 EFR3A MAP1A ATP6V0B EPDR1 ADD2 BSCL2 GOT2 NDUFA11 CAPZA2 FIGN UBE2V2 KCNA2 RPH3A CDH8 UBE2N FAM219A PCMT1 PPP3R1 OAT DNAJB6 DSTN PPDPF ITFG1 CADPS2 USMG5 ACOT7 SERPINE2 RPS26 PNKD PTGES3 GPX3 SCG2 RAB11A IQSEC1 ADAM23 C9ORF16 STXBP6 PTPRT POLR2I DLD STMN3 CCDC85B HSPE1 EIF4G2 RNASEK-C17ORF49 TUBB3 PCDHGA5 ARFGAP2 CFL2 UHMK1 NCAM2 RAB40B RHBDD2 TUBB4A JAKMIP1 KIFAP3 PSMD8 GDA PRELID1 MAPRE3 LINC00087 PCDH8 CYP1B1 DPP6 PSMA7 FXYD7 CYC1 OXCT1 SMAP2 ATOX1 RPL15 FXYD6 SDCBP MANBAL PI4KA RBX1 POMP UBA1 SERP2 BCAP31 ENOPH1 CLIP2 TPT1 LZTS1 LAGE3 GPR98 TESPA1 CDC42SE2 SPCS2 SH3GL2 ARHGDIA HSPB3 ESYT1 MGST3 PPP2R4 SCAMP5 TMA7 B3GALT2 RPS12 NDUFS6 DDX3YP1 LMO3 DNAJC5 WDR47 RPL18A TMEM258 CCDC183 NIPA1 RAB7A SLC35B1 CA10 PNKP CRYAB ANO3 RAN GUCY1A3 SIGIRR LINC01296 KLC2 VDAC2 HOMER1 TMEM59L COX8A NPTXR SCN3B RAD23B SYNPO RAP2A FUNDC1 FBXL16 NDUFB11 ZFAND5 TOMM70A CBX6 B3GNT1 NREP FBXL15 HMGCR LGI3 DIRAS1 PITPNA ASPDH PHB ANAPC11 BANF1 PRKAR1A RPL21 NDUFAF2 MAP2K1 YAF2 RAB3IP TPD52 PGRMC1 CISD1 CTNND2 TM6SF1 C19ORF70 SV2B JUND PET100 SOD1 BSG GMFG COX5B FGF12 MTPN GNAQ ELAVL4 SH3BGRL3 ARF3 RPS6 LMBRD2 SRP9 OAZ1 TCEAL7 AP2M1 FSCN1 GTF3A PCSK1 SLC30A3 TBCB PNMAL1 NEUROD6 SYT13 TGOLN2 SYNGR3 LMBR1 CTSD INA CNRIP1 MIEN1 NDUFA13 RFK HCN1 MTCH1 BCAS2 BASP1 ACP1 CLTB RNF11 COX4I1 ITM2C FAM131B TLN2 COX7A2L QDPR ABHD14A CLTC CTBP1 PARM1 MET TPGS2 SELM GNG3 MDH1 GABARAPL2 PFN1 RPL8 MED10 TUBB HNRNPA1P40 RELN RP11-219A15.1 MTRNR2L6 NGRN CYCS GSK3A TUBD1 ATP6V1G2 MRPL52 NME1 FIS1 PRDM8 USP5 ARC LGALS1 VSTM2L NPTX2 MZT1 HLA-B PCDH17 LINC00116 PRDX5 RPL38 UQCR11 ATP5J PGM2L1 CDK17 WBP11 RANP8 SH3RF1 PSMC1 BTBD1 CACNB1 ERH TMEM132D GPX4 NDRG3 TMEM14A WARS ANKRD30A RAB4A RAB1A VSTM2A RASGRF1 SQLE CAMK2D WWTR1 CNR1 RELL2 PTPRM ASAP1 UROS DACH1 RAB6A CLTA KLK5 SLC1A2 CTU2 SLC38A1 DEXI RPL10A WBP2 RAB27B TMEM141 ZBBX NAPA PAFAH1B2 MAGEH1 CAMKK2 ARL4D NHP2 LSM4 COX17 PRDX3 NKIRAS1 GJD2 CDS1 C1ORF115 MYEOV2 GPCPD1 RPL39 SLC8A2 PFKP ETS2 RASGEF1B CRIM1 COPS7A MYBPHL CD63 TXNDC17 BNIP3 ATP5H COL6A1 CPLX2 CLEC2L MMD LAMA2 HEY1 BCAT1 CD99L2 MSMO1 MRPS21 BRICD5 NAP1L5 TMEM120A MAOB PAX8 ATP2B4 SUCLA2 SLC39A3 TALDO1 GRIN1 RPL31 ALCAM ZBTB18 MTHFS MAGED1 PRUNE2 NFIA SGCD NTN4 ARHGDIG MYL6 ACAT2 LAMTOR2 DYNLL2 NEUROD2 NDP RPS10 EPHB6 ACTR6 MRAS CMAS AKAP12 PODXL NDUFC1 NEUROD1 TUBB2B COL5A3 POLR2K FBXO2 SALL2 STMN4 SELENBP1 SPOCK2 POLR2L MTUS1 TBR1 CLIP3 C16ORF13 NBL1 EDIL3 NDUFB10 MAP7D1 HSPB8 OSGEPL1 TKT HCN2 NDUFB2 UQCRC2 GSTP1 CHAC2 RPS27A SCN2B SYN1 TMEM151A TOX TM4SF1 DUSP4 FKBP4 PSENEN COX6B1 COL24A1 RHOB ANKRD20A11P ACTR10 COPG1 TCEAL5 FGFR3 CHCHD2 PSMD2 PANX1 COX5A ZNF547 UBE2E3 HN1 PPP2R2C PPP1R9B ITPR2 AP1S1 TLE4 CTXN1 FASN PPM1A PRSS3 RPS5 PDE1A MAPRE2 TMEM65 ID2 RP11-403P13.1 PEA15 UBE2M CDC37 MBOAT7 RANBP1 MRFAP1 KRT17P6 TMTC1 TCEAL2 SAMM50 PPTC7 C1ORF52 C6ORF1 SLC25A6 KLHDC3 THYN1 PVRL1 PTPRN2 UQCRC1 C2ORF74 COX6C TMEM147 GMFB WNT5A NDUFB3 HOPX CD59 CBLN4 LDHB SDHAF1 HNRNPH2 IGFBP2 CPLX1 ARL4C RPL3 NAP1L2 TMEM158 GADD45B LPPR4 LAMTOR5 NFE2L1 SUMO1 IDI1 PNMA1 NUDT21 FAM127A NDUFV1 TOMM7 OPN3 ATXN10 JOSD2 POLR2J EGFL7 ENPP2 PHPT1 HPRT1 KCNA1 NDUFA2 SYT5 CKLF CACNG3 NDUFB5 PLEKHH2 CDH13 CADM3 BAD GYG1 CYBB HMGB1P8 RPL12 ARL1 SSTR1 CYSTM1 ARHGAP29 RPS15 CRYM ETV1 KCNK1 CYBRD1 NNAT MPI ATP5G1 C14ORF132 NEFH FARSA GPX1 MAP1LC3A SCD ATPAF1 ALDOC ZNF343 AURKAIP1 TMEM150C SCD5 RIT2 ARHGAP35 EHD3 DMTN SNCG GPR171 PPP1R7 OLA1 GREM2 BRK1 SNX3 PLS3 OST4 TXN GLUL RPL26 RPS4X SNAP91 MT-ND5 CDH22 FLOT2 BDNF EIF1B C1ORF233 C1QL2 RHOA SLC7A1 UBB XX-CR54.1 PHYHIPL GPR6 KIF1A CTNNA2 ANXA6 GLO1 KCNF1 GDE1 IGSF21 CCDC184 BMP8A RPL35 ABHD8 LYSMD2 AGA KIAA1045 SNRPE TNNT2 BAG4 GSG1L DRAP1 MRPL20 TRAPPC1 ARF5 THOC7 MT-ND4L PAM ATP6V0E2 ASNA1 TMEM191A MBP C19ORF10 ATP6V1C1 LAMP5 EPHA6 TMEM35 SRD5A1 FRMPD2 IFITM1 PSMB3 SSTR2 RPL41 GABARAP SERF2 RPL36A\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "cortical layer 2-3 excitatory neuron B" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MT-CO3 MT-CO1 MT-ND1 RPL36A CHN1 ENC1 MT-ND4 SNAP25 MT-ND3 PPP3CA MT-CO2 MT-ATP6 PEBP1 SYT1 RTN4 NECAB1 MTRNR2L12 VSNL1 MAPK1 PREPL SNN SLC24A2 PRKCB TMSB4X LMO4 RPL37A PSAP SLC12A5 CDK5R1 OLFM1 RPL7 GNAQ IDS ELMO1 FAT3 ATP1A3 SLC9A6 CLSTN1 MAP1B MT-ND4L INPP5F CALM3 EFR3A GAP43 RTN1 ONECUT2 LPPR4 ATP6V1G1 EDF1 TMSB10 UQCRB MT-ND2 EIF4A2 TMX4 ATP1B1 SH3GL2 PRNP RPL26 PHYHIP GRIN2A CPLX2 NGFRAP1 SLC38A1 STXBP1 MAL2 NEGR1 RLIM PINK1 COX7C CLIP2 APLP2 YWHAB CREG2 MOBP CALM2 RPL41 PDP1 OAT ACTR10 SCN1B TSPYL1 LMBRD2 NCEH1 ATP5A1 MTCH1 AP2M1 PCMT1 BNIP3 MTRNR2L1 RPL13 APLP1 RPL8 SUSD4 PPP2CA IPCEF1 ACTG1 RPL38 PLCB1 SLC38A11 LINC00116 MAP2K2 OPCML YWHAG FGF12 TMEM70 DPY19L1 NAT8L RRAGA PNMA2 COPS8 RPL31 NDFIP1 C11ORF96 ATP5G1 CFL1 SNCA ATP1A1 DMTN RGS12 SCAMP5 C1ORF115 TOMM20 NDRG3 CH17-53B9.2 MT-CYB MRFAP1 CTNNB1 FABP5 YAF2 SYN2 CSDE1 DIRAS2 GDI1 KCNC3 MLF2 ATP5E PEA15 CHCHD2 RPL32 MAP4 RAB6B FXYD6 PTGDS TSPAN7 GPM6A SUB1 SEZ6L PCP4 B3GNT1 ATP5G3 ATP6V0B PRKAR1B NFIA ERH MAP2K1 SULT4A1 NEUROD1 DNAJC5 PHYHIPL CFH DNAJC21 ARF5 TBC1D15 ALDOA RPL13A ESCO2 ZNF385D RAB3B SYTL2 ARFGAP2 PCDHGA10 PCDHGA5 PCDHGA6 TF HNRNPA1P40\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "cortical layer 2-3 excitatory neuron B" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: CHN1 SYT1 CALM1 SNAP25 RAB3B PRNP CALM3 YWHAB SV2B NECAB1 RTN1 CALM2 BIRC5 GDI1 RP11-111M22.2 MAST3 TBR1 RTN3 HSP90AB1 MAP1A SYTL2 FTL GYG1 KLC1 SNCB PAK1 TSC22D1 UBA1 TMEM130 MAPK1 LANCL1 RELN BEX1 MT2A ETFB EIF1 MT-ND4 MED10 ARL6IP1 PI4KA ATP1A3 FAIM2 GPM6A DKK3 KIF1A ENC1 RGS4 TBCB DPP6 PPP1CB MT-CO1 RPL38 GRIN2A PHYHIP TRMT112 RCAN2 PEA15 HSPB8 CCK PIK3R1 MAPRE2 RPL13 SCAMP5 THY1 PPIA NRGN DCLK1 PSAP PJA2 NAP1L2 MMP24-AS1 ATP6V1B2 ATP1B1 PTPRN NDRG4 ATP2B2 SLC9A6 SCN3B VSNL1 ITM2C NAT8L PRKCB PCDHA10 PCDHA4 CDC37 PLD3 UCHL1 WBP2 ARL1 SPARCL1 FTH1 LIN9 LYNX1 SLC17A7 RAB5C PET100 LMBRD2 KRT17P6 FASN ENSA CHP1 SYT3 PRKACB NCAM2 LDHB C1ORF115 MZT2B FAT3 MLLT11 ARFGAP2 CDK5R2 HOPX LL0XNC01-16G2.1 SIRPA VAMP2 BASP1 HSP90AA1 ZBTB18 PPP2R2C RPS12 OPA1 ATP1A1 ATP6V1C1 APLP1 SYT13 STMN1 COX5B SLC38A11 APP FAM84A KIAA1045 SYNJ1 TOMM20 SLC7A5 IL33 UBE2E3 PHPT1 PEX5L CKB MPP1 GLIS3 GRIN1 COMMD6 SERPINE2 CAMK2G DPY19L1 FBXO2 MT-CO2 ENOPH1 YWHAG KCNAB2 OPCML SERPINI1 ARHGDIA PCDHGA5 MTPN MRPL33 PPP2CA COX7A2 RPL12 ATRN CLU SERINC1 ADSS RRAGA EPB41L3 PREPL RPL7 NDUFA12 RTN4 CORO2B GPR116 FAM131B NGFRAP1 GUCY1B3 PPP2R2B CHMP4B ATP9A TSPYL1 RRM2B MARCKS ZCCHC24 OR6D1P SLC12A5 PPP3CA TUBA4A SNCA WASF1 PPP2R4 PCSK1N RPL37A RPS28 DNAJC5 SYNGR3 UQCR10 ATP6V1E1 DYNLL1 SLC8A2 YWHAH FXYD6 MT-CO3 CREG2 MTCH1 AP2M1 NFE2L1 RPL3 ADAM23 USMG5 SCN1A MT-ATP6 ATP6V1A SARAF GABARAP ALDOA KRTAP5-7 TCEAL3 HCN1 OCIAD1 PPARGC1A ATXN10 PGRMC1 PSMD12 MT-CYB RPL41 COL11A1 GDA PPP3CB GRPEL1 KIFAP3 ATP6V0E2 TOMM22 DMTN NDRG3 LIMK1 CSDE1 NREP ATP5J2 GAPDH EPS15 STX1A ATP6V1G1 CAMK4 NPTX1 YIPF3 RAB11FIP5 COX7B SMS NDUFA4 COX6A1 CADM2 SCG2 TMX4 PDE1C PNKD TMEM14A DPYSL2 SLC39A10 AP2B1 LINGO1 SPRN PTPRZ1 NPTXR ARPP19 OAZ1 NDUFA13 PNMA1 CCDC25 STMN2 ACTB RNF208 TUBB3 GSK3A RPL6 ATP6V1G2 CYB5R3 GTF2H2C_2\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "cortical layer 2-3 excitatory neuron B" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MT-ND4 MT-CO1 MTRNR2L1 MTRNR2L12 MTRNR2L6 PEBP1 SYT1 CHN1 MT-CO2 MAP1B RTN3 MT-ND1 SNAP25 FAIM2 AC244489.1 RTN1 RTN4 ATP1B1 CADPS2 MT-CO3 GAPDH HSP90AB1 PPP1CB PARM1 MTRNR2L8 SYTL2 ZNF385D RAB3B ESCO2 RAB3IP GPM6A ENSA NDUFB7 PINK1 TOLLIP SLC9A6 MAPK1 CTNNA2 SPTBN1 MT-ND2 B3GNT1 TUBB2A AP3S1 YWHAB FKBP1A SYT11 PEA15 SULT4A1 PNMA2 NREP PPP3CA RAP2A PEX5L ATP5I VAPB NGFRAP1 EIF4A2 NAP1L2 TCEA2 TMSB10 PPP2CA ELAVL2 YWHAH IFI6 ZBTB18 TMSB4X ATP6V0B GDI1 MAST3 CALM2 TOMM20 HS6ST3 VAMP2 NAT8L KIF21A CARTPT C14ORF132 CLU PEG10 DMTN BEX2 MYL6 MYBPC1 SUMO2 SSBP3 KCNH5 RPL18A HINT1 TGOLN2 PREPL CRIP2 ZFAND5 ARF3 NAPB H2AFZ ASAP1 COL5A3 ARHGAP35 HSP90AA1 FTH1 HIST1H2AC PSMA7 ITFG1 GNAQ WSB2 NARS ATP2B4 RHBDD2 RPL23A APP PPP2R1A PHYHIPL STMN1 CHL1 ACTB PI4KA SH3GL2 BCAP31 EPB41L3 BCL11B CBLN4 CALM1 SPOCK1 COX7B SUMO1 DCLK1 USMG5 C14ORF2 PPP3R1 SCN1A TSPYL1 EFR3A SERINC1 MYL6B ACTR1A RAB2A RPL39 BSCL2 CFH NUDT4 RP11-20I23.1 ARL6IP1 ATP6V0C IDS GTF2H2C_2 RPL7 TBC1D15 DNAJC21 TF\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "cortical layer 2-3 excitatory neuron B" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MT-ND4 CHN1 MT-CO3 SYT1 MT-CO1 CALM1 NECAB1 MT-ND2 CCK PPP3CA SYTL2 RAB3B TUBA1B MAP1B MT-CO2 VSNL1 NRGN MT-ND1 ONECUT2 ACTB PRNP APP ARFGAP2 ZNF385D BEX1 MT-ATP6 RTN4 SCN1A RGS4 TMA7 MTRNR2L12 RPL3 ISCU ATP2A2 SKP1 MAPK1 ATP1A1 NR1I3 IDS ARL6IP1 PPARGC1A DYNLL1 RHBDD2 YWHAZ ARF1 CX3CL1 UBL5 KLC1 TOMM20 KCNAB2 PAFAH1B2 TSPAN7 CHL1 ATP1B1 ATP2B2 SYT11 FGF12 SERINC1 TSPYL4 PHYHIP PRKAR1A ATP6V1C1 IPCEF1 RPS4X FAT3 ITM2B DKK3 APLP1 SLC17A7 NCAM2 SERF2 HSP90AA1 TMSB4X CABP1 PCSK1N PIK3R1 SCN3B GPM6A CALM2 SYNGR1 ELAVL2 HSP90AB1 PNMA2 SARAF NAT8L CALM3 SPARCL1 BSN EIF1AX PRKCB TMX4 OXR1 EIF4A2 HNRNPA1P40 TUBD1 TLE4 TCEAL5 SLIT1 STMN4 GRINA OAZ1 PNMAL1 TOMM22 SNX3 LAMP5 S100A6 CA10 PTMA TPGS2 PGRMC1 JUN TRHDE TBCB NDFIP2 PSMB7 PSAP ATP6AP2 ID2 PSMC5 MARCKS LINGO1 ZMAT2 KCNA2 GAPDH THY1 ACTR6 GAP43 GABRA1 DDAH1 PEBP1 FTL MYL12B NRCAM GPR56 CERS6 ATP5F1 PRDX1 SERPINI1 SYN1 CTNNA2 NEUROD1 GSKIP ENC1 ATP5A1 STX1B D4S234E PFDN4 APEH UCHL1 ACTR1A ARL8B NPTN ROBO2 DYNC1I1 RCAN2 ACP1 SPOCK1 ATP9A ARF3 SELM ATP6AP1 EGR1 MT-ND4L TRIM37 STXBP1 ENO1 EPS15 AHNAK2 HSPBP1 LYSMD2 NIPA1 PRPS1 ELAVL4 HOPX GNAQ ARL6IP5 WDR47 RPL13 ZFAND5 RP11-111M22.2 APLP2 RPL41 FILIP1L GABARAP YWHAG CSDE1 NAP1L2 EPHB1 C14ORF2 RAB3IP GUCY1B3 SSBP3 RAB4A MT-ND5 MAP2K4 FXYD7 LIG1 RAB3A RTN3 YWHAH PEX5L SLC24A2 MTRNR2L1 GABARAPL1 SERINC3 SKAP2 BSG LPPR4 TSPYL1 PSD3 DNAJB6 RASGRF2 CPLX1 CLU MRPL47 LANCL1 ARPC5L APBB1 NUDT21 NELL2 AK5 CPE PJA2 SNCB HSPB8 CFI GPATCH4 LMBRD2 VAMP2 GNG2 SCAMP5 NDUFB2 RAD23B RRM2B CRKL PREPL TEX2 VSTM2L SRP9 NDFIP1 TMEM59L PPP3R1 PCDH17 PRKACB CLSTN1 PSMC3 COX7C SNAP25 OPN3 LDB2 ENO2 SH3GL2 TMOD2 CD59 VPS35 CBX6 STMN2 NRN1 SLITRK1 SUB1 CORO2B FXYD6 NBL1 CAMK2G SNAP91 PLD3 ATP6V1B2 PODXL RTN1 ATP2B4 DNM3 PAM UBA52 CLTB WASF1 IGSF21 HOMER1 CAPZB CYFIP2 KCNK1 MT2A CAP2 REEP5 WBP2 SSTR2 UQCRC1 EDF1 FAM19A2 ITM2C IDH3A LGI3 COL24A1 MT-ND3 SGK223 DPYSL2 MYO1B MYH7 PPP2R2C SOD1 GLRA3 OLFM1 PLCB1 FAIM2 CPLX2 FTH1 NSF RPL17 RPL17-C18ORF32 PLEKHD1 TBC1D15\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "cortical layer 2-3 excitatory neuron B" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MT-CO3 MT-CO1 MT-CO2 MT-ND4 SYT1 SNAP25 MT-ND3 ENC1 CALM2 MT-ND2 RTN3 MT-CYB MTRNR2L1 MT-ATP6 MT-ND1 CALM1 ATP1B1 CHN1 RTN4 MAP1B NRGN GPM6A VSNL1 CLSTN1 YWHAG GABRA1 PREPL GAPDH CLU TSC22D1 GDI1 SPARCL1 FAIM2 NECAB1 PRKCB MTATP6P1 APP ZBTB18 MTRNR2L12 MT-ND5 CALM3 VAMP2 EIF4A2 PHYHIP CADM2 TMSB4X RGS4 ARPP19 CNTN1 ATP2B2 CAP2 PRKACB ENO2 PPP3CA RTN1 CPE NAP1L2 CDK5R1 MTRNR2L6 CREG2 RHBDD2 PIK3R1 NPTXR YWHAB PRNP GAP43 CABP1 MTPN NAP1L3 PJA2 BEX1 FKBP1A DYNLL2 PKM RCAN2 SLC22A17 YWHAZ SERINC1 STXBP1 MORF4L1 TSPAN7 NDRG4 ATP1A3 PCDHA4 TBC1D15 ITM2B DCLK1 COX6B1 SLC39A10 ARF3 YWHAH TERF2IP ARL6IP1 EPB41L3 NEFL SNRPN ACTB CCK PPP3CB SEPW1 PNMA2 PNMA1 BASP1 SERPINE2 FXYD6 INPP5F OXR1 AK5 CADM3 WASF1 MTRNR2L8 OLFM1 JUN ZFAND5 ATP1A1 NGFRAP1 RPH3A PRKAR1B STMN2 SLC12A5 OPN3 MAPK1 RBX1 TMA7 KCNAB2 TSPYL1 TMEM59L ELMO1 SERPINI1 SARAF COX5B SLC6A17 SYT11 ZNF365 NREP LDB2 BSCL2 COX6A1 VPS35 NAPB VDAC1 CBLN4 ATP5B TMEM130 TMX4 COX7A2 BSN CX3CL1 NPTX1 NAP1L5 KIF1A PFN2 APLP2 SCN3B UBQLN2 PPP1CB OPCML STMN1 SLC24A2 HSP90AA1 NCEH1 MAST3 TCEAL5 NGRN IDS HMP19 KIF5A CAPZA2 RP11-111M22.2 ALDOC PPP2R1A C1ORF115 BCAP31 SCN2B RPS15 GNAQ ADORA1 HMGCR ATP5E MT-ND4L EIF1AX RPS27A GRIN2A DHCR24 PGK1 ATRN FAM84A PSAP GABARAPL1 TESPA1 CAMK2G HSPB8 CAMKK2 PSD3 TUBB2A CYFIP2 SCG2 PRKAR1A WBP2 GORASP2 APLP1 KIF21A PGAM1 GUCY1B3 WFDC3 DNAJB6 MT3 PPP2CA TOMM20 PRDX3 DCTN1 JUND SELM SPOCK2 PTK2B TUBA4A POMP SOD1 SV2B NELL2 RPL35 POLR2I MAP2K1 UBC TMEM65 OPA1 NSF ONECUT2 SERP2 PDP1 ATP2A2 KIAA1045 FUNDC1 TUBB4A LANCL1 RAB6B TOLLIP ATP6V1E1 PCSK1N TMEM155 THY1 CAPNS1 TAGLN3 RABAC1 CHL1 ATP6V1A UBE2V2 PLCB1 NDUFA13 PCP4 C3ORF80 CDK14 CDC42SE2 TUBA1B UQCRC1 CEND1 OAT SNX3 FAM174A RAB1A SLC9A6 B3GNT1 GALK1 MANBAL HOPX TCEB2 ADD2 MDH2 RAPGEF5 FASN GOT1 RPL15 RAD23B CKB OAZ1 GRIN1 ATP6V0E2 USMG5 COX7A2L PEX5L C14ORF2 COX4I1 ACTR10 NAPA CRYM SSBP3 PTGES3 CLTC KCNV1 ATP6V1B2 DYNLL1 MAP1LC3A GDA HSP90AB1 ETS2 FAM3C RPL18A FSCN1 PPIA FTH1 TGOLN2 NDFIP1 SERINC3 CDH13 SCOC PLD3 AP2S1 ARHGAP35 PAFAH1B2 FAM127A KLC2 ATP6V0C RP11-20I23.1 BIRC5 ZNF385D RAB3B SYTL2 MTND1P23 PID1 NDUFA11 MYL12B CLPTM1 NDUFB5 ARF1 HPCA TMSB10 COPG1 SLC25A11 DUSP1 NPTX2 PRUNE2 TBC1D7 DUSP4 C20ORF24 FAM198B GHITM LCN12 KLHL12 NDUFC2 ATP5F1 PPP2CB WSB2 LMO4 SIRPA ARFGAP2 DGUOK FBXL16 RPL8 SLC8A2 SYT4 PTMA TUBB4B C14ORF132 NDUFB2 SLC1A2 OCIAD1 TMSB4XP4 UROS TCEAL7 POLR2M LINGO1 GLUL ATP5A1 PPP2R2B LINC00087 C16ORF13 HBQ1 ELOVL7 TMEM11 PGM2L1 FAT3 TXNDC17 LAMTOR1 FAM134A MDH1 COPS8 PIN1 AP2M1 FAM96B PSMD2 DYNLT3 RPS4X MFSD6 PAM SULT4A1 NDUFA4 RPS28 MRPL55 ATG101 DPYSL2 MFN2 RPS26 PCDH8 ATP5I ERH PFDN4 HOMER1 ANO3 PSMB7 PPM1A WASL ARL8B DPP6 RP11-195F19.5 RAP1GAP2 REEP5 PPP2R4 PRKCG RAB3C NFIA MAP2K4 KLHDC3 STUB1 ACTR1A LINC00116 RNF11 UBE2E3 RASGRF1 SH3BGRL2 AZIN1 FBXW11 ATP6V0B APBB1 VSTM2L EGR1 SNCB TPT1 PET100 ADCYAP1 SRP14 AQP4 KCTD12 SYNJ1 ECM1 NDUFA5 PSMC3 BAG4 PSMD8 BCAT1 DKK3 ASB13 CPLX2 WDR47 FAM163B CERS6 RAB3A AES COX7A1 GTF3A BANF1 ARL6IP5 HSPA8 PHYHIPL SEMA3C C1ORF233 NRSN2 TPGS2 RHEB MAGED1 ABHD14A SLIT3 ATPAF1 LMO3 PGRMC1 SGK223 RRAGA BHLHE40 ZNF574 COL24A1 RAP1GDS1 CHMP5 GPX4 ITFG1 EFR3A RHOB MBP RAB2A LMBRD2 HSPBP1 UBA1 NGEF TUBB3 CRIP2 IGSF21 PTPRS NDUFS5 WFS1 SNAP91 KCNF1 ATP6V1F VDAC3 PEA15 PPP1R7 NPM1P30 MMD PCBP1 EIF1B STK39 AKAP12 RPL41 SYNGR3 LDOC1L SNX10 NTN4 HCN1 CCDC115 DMTN C4ORF3 TRMT112 CFL1 GSTT1 TPRG1L CHGB ABHD8 FAM219A TPI1 BMP8A TUBA1A MLF2 CLSTN2 COPE LPPR4 ATP5G3 RPL3 NUAK1 TSPYL4 SERPINF1 RAB7A NBL1 FKBP4 UBE2N ARHGDIG SUMO2 C1D RANBP1 HIGD1A FGF12 ATP6AP2 EID1 UBE2QL1 MTCH1 RAB6A CAPZB UQCR11 TCEAL2 SKAP2 LL0XNC01-16G2.1 NDUFB7 AP3S1 CD99L2 MAPRE3 DEXI ACTG1 PI4KA NEFM MAPK8IP2 UCHL1 HINT1 MAL2 UQCRH INA MMP24-AS1 CCDC85B COL11A1 MBOAT7 PCDH17 PRDX2 SYN2 PEG10 SCN4B ADAM23 FAM162B PEBP1 CAMK4 PNMAL2 PAK1 CA10 RPL17-C18ORF32 CPLX1 SLC17A7 REPS2 UBE2D2 H2AFZ LMBR1 ANXA7 UQCRFS1 TMEM70 USP5 TMEM158 ZBBX ITPR2 PFN1 RPL31 PCMT1 NARS UQCRB DCTPP1 MAP4 SYN1 SMIM13 TPD52 SOX9 C1ORF52 RPL17 ATP2B4 RPL11 MAP1A SH3BGRL3 GPCPD1 SNN MAGED2 RAN NEGR1 FTL RPS6 P2RX6P NDFIP2 RIT2 UHMK1 CDK17 BSG DMKN TMEM35 BEX5 CLIP3 SCD5 BNIP3 SEZ6L2 NEFH COX8A ENO1 ID2 RPL13A SCAMP5 ELAVL4 RPL32 MFGE8 DNM3 MTX3 UBB RPL21 RNASEK-C17ORF49 EPHB6 ARF5 TUBB ALDOA ATP6V1G2 GTF2H2C_2 AC244489.1 PCDHA10 PCDHA9 PCDHAC1\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "cortical layer 2-3 excitatory neuron B" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: SNAP25 MT-CO2 MT-CO1 MT-CO3 SYT1 RTN4 SYTL2 CALM2 ARPP19 CALM1 RP11-111M22.2 RAB3B CHN1 HSP90AA1 PRKACB STMN1 MT-ND2 MT-ND4 CADM2 PRNP MT-ND3 PSD3 UQCRB CKB RPL31 RPL38 YWHAG PPP3CA THY1 CALM3 RPS28 VSNL1 ATP2B2 ARL6IP5 YWHAH OCIAD1 TBC1D15 SCN3B LINC01296 PRKCB NGFRAP1 RAB6B ATP1B1 RTN1 NDUFB1 NRGN ENC1 SLC30A3 MAP1B UCHL1 TMSB4X ACTB DPYSL2 OLFM1 RPL26 NDUFA4 PJA2 NPTX1 TMSB10 NFE2L1 GDI1 STXBP1 BEX1 NCAM2 SYT4 SYN2 NEFL ITM2B KIF1A LINC00086 WBP2 RPL37A TSPYL1 NRN1 RPS12 TESPA1 HMGCR RAB3C TUBA1B CCK MT-CYB PKM ENSA TUBB HNRNPA1P40 ARFGAP2 CNTN1 SLC17A7 SERPINI1 GABRA1 FAT3 ABHD14A PLCB1 CD63 PI4KA PGRMC1 KLHDC3 CDK5R1 RPS3A AZIN1 SV2B TERF2IP CDH8 NRCAM RPL41 ENO2 RTN3 NPTXR ATP2A2 COX4I1 TMA7 PDP1 FXYD6 SLC22A17 PPP2CA PREPL APBB1 RAB6A DMTN RPS15 EFR3A KCNMB4 SLC12A5 CPE ZBTB18 SAP18 RAB3A LINGO1 GDA GAPDH AK5 SPARCL1 DYNLL1 MAPK1 PEBP1 NPTN MBOAT7 PHYHIP ATP1A1 LPPR4 PIK3R1 OAT RNF11 TUBB2A GRIN2A ATP5A1 ZNF385D PPIA RP11-20I23.1 ATP6V0C PGK1 EPB41L3 CHL1 PINK1 VDAC1 EIF4A2 UBC FAM19A1 CSDE1 COX5B FKBP1A LMBR1 DPP6 MTCH1 SULT4A1 UQCRQ SYT11 BRK1 SKAP2 DKK3 TBR1 PIN1 ELAVL4 CAP2 RPL12 BSN MTPN ATP5J PSMC5 BEX4 EIF1AX GABARAPL2 NDUFS5 TCEAL3 RGS4 C16ORF13 MT-ND5 ANXA7 SIRPA TCEAL5 KCNAB2 DYNLT3 SSBP3 SRP14 NDRG4 PFN2 BEX2 RAB40B TPD52 ITFG1 NDUFA2 TSPYL5 DCLK1 RHEB REPS2 RHOA NDUFA13 PPP2R2C RPL18A OR2M4 NCOA4 MT-ND1 C19ORF70 RPS6 RPS10 DRAP1 SERINC1 CLTC CCDC183 KLC1 MAST3 OXR1 NUDT4 ACTG1 IGSF21 RPL7 SCD5 FBXL16 ZWINT NECAB1 PTPRT ATP6V0E2 GPM6A SLC39A10 KIF5A NDUFB2 EPHB6 IQSEC1 C14ORF132 NNAT HMP19 GYG1 TSC22D1 ATP5I GPR116 MDH1 DYNC1I1 SYNGR1 STMN3 GUK1 VAMP2 USMG5 SERF2 LAGE3 RPL13A NAP1L5 DCTN1 RPS27A NEGR1 CFL1 RPL36A MAPRE3 RPL8 ENO1 TMEM230 RAD23B UBE2QL1 TMEM191A MCHR2 SERPINE2 NREP ZFAND5 ATP1A3 HINT1 CABP1 NDUFA11 TOMM20 LRFN3 RPL35 ACTR1A KIFAP3 ZNF365 ANO3 ARL6IP1 GABARAPL1 ALDOA NGRN RPS2 TSPAN7 NUDT21 LINC00116 TUBA1A PRELID1 DNAJC5 ADORA1 CTNNB1 C1ORF56 APP TUBB4B LMO4 NWD2 QDPR HRK NDFIP1 EGR3 SYT5 TCEB1 H2AFZ RP11-632C17__A.1 CNR1 CDK17 CHMP4B SMYD2 B3GALT2 EGF SPRYD3 BAI2 CA10 GHITM SYNPR ASAP1 STMN4 VDAC2 C14ORF2 PSAP DBNDD1 CACNG3 PDE1C PNKD PRKAR1B SPARC ALDH1L1 FTH1 BANF1 OR6D1P MANBAL CIAPIN1 SCAMP5 ETS2 NDUFA4L2 RCAN2 DNAJA1 C7ORF50 PRKCE MARCKS RHBDD2 SPTBN1 ACAT2 ROBO2 TPRG1L CLIP2 GRIN1 SLC8A2 APLP1 CNTNAP3 BNIP3 UBE2D2 MFSD6 SEZ6L2 NCDN MAPK8IP2 ATP6V0D1 KIF21A CAMK4 AP2B1 RFK RPS4X CDC42SE2 ACTR10 PLEKHG1 COA4 CLIP3 PLS3 RTN4R ZBBX STK24 MAP1LC3B WDR47 ATP6V1B2 NDUFB8 SNX10 AP3S1 FIBP CBX6 GPX4 TCEAL7 RAN PPP2R1A PEX5L SNN PCDHGA5 CYC1 BAG4 EIF1 PRDX3 WBP11 DGKG MAP2K1 UBA1 VSTM2A CORT RAP1GAP2 GUCY1B3 THYN1 INPP5F BCL6 SNCG HSPA4 PET100 PTGES3 ELAVL2 APLP2 COMMD6 GABPB1 WASF1 MRFAP1 SYNGR3 YDJC BASP1 VDAC3 MMD FAM19A2 NRSN2 RASL11B SELT HSP90AB1 PRKD2 TOMM7 TLN2 C6ORF1 GPR158 SMS GLO1 HMGCS1 CAB39 ALDOC TUBB4A ENOPH1 GSK3A TSPYL4 RPL32 MAPRE2 CALB1 SLC38A1 SUMO3 ATXN10 KCNH5 GPR171 NGEF ARHGDIG DIRAS1 SYT17 NDUFV1 FILIP1L AES NUAK1 PNMAL1 MT3 HDLBP MAGEH1 PIK3C2G LRRC53 ADD2 CHMP5 NEFM FAIM2 MSMO1 SNAP91 IQCK SLC9A6 DIRAS2 PRPS1 GLRA3 MYEOV2 COL11A1 NAPA MAP7D2 TMX4 PSMD2 PPM1A CHP1 WARS UROS POLR2M CRIP2 LMO3 EID1 RAB7A THSD7A COL5A2 PPP1R9B ISCU PLD3 PAK1 PDCD5 CD59 RPL13 MTATP6P1 NDFIP2 MAP1LC3A FAM127A PSMA7 PCSK1N POLR3H MB21D2 PDE1A PTGDS WASL CTBP1 SYNJ1 TMEM117 NME1 C19ORF43 DISC1 NELL2 ETV1 CTNND2 TBCB MRPL52 CLSTN1 RAB9A FAM174A ATP5J2 STX1B ARSE MT1E GRINA PTMA KITLG SNRPN EHD3 SUMO1 IDI1 RPS19BP1 EGR1 EGFL7 UQCR11 ATP5E LGALS1 GNG3 DNM3 RPL39 SYT13 DNAJB6 YWHAQ PRDX1 COX6C TMEM151A ERICH2 AP2M1 PPP3CB C16ORF93 MRAS PRKAR1A CCDC124 KIF7 MTRNR2L1 KCNC2 TRIM37 HN1 SRM FAM84A GABARAP SNCA YWHAZ SARAF YJEFN3 ACP1 NDUFS6 MORF4L2 MRPL55 PRKCG VPS35 SRD5A1 ARL8B JAKMIP1 TMEM147 ATP6AP1 ATP6V1G1 MRPS21 NCEH1 CMAS BSG MT-ATP6 TMEM59L NAP1L3 CA11 NHP2 RAB11A RASGRF2 AKAP12 MYL6B SDCBP SQLE TOMM70A PRDX5 ATP2B4 NIPA1 TBCA STMN2 NDUFB11 EDF1 STRAP COX7C IDS FBLN2 ARPC4 CHRDL1 RHOB ATP6V1F AP1S1 PPP2R4 PFKP SYNPO UHMK1 SLC24A2 MPC2 SNCB PARM1 PPP3R1 RAB1A C9ORF16 HPRT1 ARL1 CREG2 MLLT11 KCNAB1 SMIM13 LYNX1 EIF4G2 RPL3 MTRNR2L12 GUCY1A3 PPP2CB STX1A VSTM2L SEPW1 BTNL9 COX7A2 IPCEF1 DNAJC6 GPRC5B CLU RPL23A COX17 RAP2A CTSD CAMK2N2 MYOM2 RPL17-C18ORF32 C18ORF32 RNASEK-C17ORF49 ATP6V1G2 NSF BSCL2 ARF5 TUBB3 AC244489.1 RPL21\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "cortical layer 2-3 excitatory neuron B" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: SNAP25 MT-CO1 ATP1B1 RTN4 RPL37A GPM6A STMN4 RPL13A PREPL MT-CO3 CHN1 BEX1 CALM2 GRIN1 RPL41 VSNL1 CADM2 SYT1 TOMM20 YWHAZ CALM1 RTN1 SERINC1 PPP3CA RTN3 SEPW1 RPS27A SUB1 MT-ND4 KIF21A OLFM1 TMEM59L TAGLN3 RPL38 RP11-219A15.1 RHBDD2 SCOC SYT5 RPL31 RPL26 VAMP2 MT-ND2 RPL21 NGEF NPTX1 PRNP REEP5 TPI1 EIF4A2 TMA7 NDUFA13 RPL7 BTBD10 TUBB2A CLTC OPN3 GAP43 SLC38A11 CYCS SLC22A17 RAB6A UQCRB NDRG4 RP11-111M22.2 RPL17 UQCR10 DKK3 UQCRH CFL1 CADM3 CHL1 APLP1 IDH3A NUAK1 NDFIP2 ATP5J CPE NRCAM THY1 HPRT1 TSPAN7 ATP6V1C1 GNAQ DCLK1 MAPK1 PIK3R1 STXBP1 SKP1 RPS4X CNTN1 RPL3 ACTG1 ENC1 C1QL2 ATP6V1A TGOLN2 PSAP RGS4 RPL13 TM2D3 MLLT11 ITM2B ANXA7 FAT3 TSC22D1 PACSIN1 CDC37 RAB40B HMP19 MAP1B NRGN ATP2B2 NPTN PRKACB AP2M1 PJA2 ZBBX ALDOA BNIP3 ATP6V1B2 NEFL MT-CO2 APP MRPL51 TMSB4X RPS15 PRKAR1B DYNLL2 DPP6 SIRPA PNMAL2 PCP4 ENO1 NAT8L GRIN2A CA10 UBE2V2 NR1I3 GABARAP TMOD2 CLDND1 CYFIP2 GRINA COX7C MT3 MBP NEUROD2 CHAC2 LMO3 ACTB FAM163B VDAC1 BEX5 CMPK1 CHCHD2 PEBP1 WDR47 SCG2 TSPYL1 STAG3 HIGD1A CPNE8 AP3S1 QDPR RAB11A SLC30A3 FTL EFR3A TMSB10 EIF4G2 NDUFB10 BSCL2 CPLX2 PNMA2 TUBA4A MMD HNRNPH2 CCDC144NL HS6ST3 RAN CDH13 CNTNAP5 UBE2QL1 GTF2H2C_2 AP2S1 SYNJ1 GSG1L MTPN MSMO1 PRKCG CTXN3 CHMP5 CLSTN1 PPIA SERPINI1 PPP3CB NMNAT2 SLC8A2 HAPLN2 DNAJB6 CREG2 KLC1 TBR1 SPOCK1 MTCH1 RPL12 CNTN6 ARL6IP1 CA11 COL5A3 OXR1 ARPP19 GABARAPL2 MT-ND4L EID1 CYP26B1 PTPRN GNB1 ATP6V1F RAP1GAP2 SH3GL2 COX7A2L THSD7A SLC12A5 NPTX2 FAM219A MAP2K1 USP5 CTC-575D19.1 OCIAD1 CXCL14 LZTS1 RSL24D1 TPT1 SARAF ZMAT2 CCK SYN1 FAM19A1 MDH1 RBX1 GDI1 WBSCR17 TUBA1B RAB7A WSB2 PVRL1 NECAB1 NDUFA12 NRIP3 MYL12B PEA15 NCEH1 MRPL20 CAMK4 HMGCR EIF1B FKBP1A PFN1 RPL39 HINT1 SNRPN STAG3L5P ELMO1 SCN3B CKB CAP2 KIFAP3 PNMA1 RAB2A SNAPC5 ARL6IP5 LDHB SH3BGRL3 ACTR6 GABARAPL1 ATP6V0B ATP5O RAB6B TRIM37 YWHAG GOT1 C10ORF54 TPPP NAP1L5 ATP5E PHYHIPL VPS35 LANCL1 ATP4A PGM2L1 ZFAND5 SYNGR1 ADAM23 ROBO2 MTRNR2L1 SMS MAP4 SULT4A1 UQCRQ REPS2 MORF4L2 RPL23A NDUFC2 NOV FAM3C RP11-20I23.1 PSMD8 C4ORF3 NEFM ATP2A2 BASP1 LRRIQ1 SELT POMP ATP6V0C COX6A1 C1ORF52 MYEOV2 BIRC5 NAP1L3 COX6C PEPD RPS3A GAPDH PKM CDH22 GOT2 STMN3 UBE2E3 NDUFA11 TBC1D28 HSP90AA1 RFC4 IGSF21 RPS6 NEUROD1 PFN2 MT-ND5 RPS2 COX7B MRPL37 HBB NAP1L2 NGFRAP1 ZBTB18 RPS12 TCEAL2 SYT3 CABP1 DIRAS2 POLR2K NDUFA4 AAMDC MYL6 ATP1A1 ATP6AP2 MAST3 PRKAR1A CAB39 ATXN10 PSD3 CCDC85B RHEB TMEM130 GMFB SNCB PI4KA FSCN1 SLC25A4 FBXW11 TMEM160 NDUFB7 OAT TMEM155 CHP1 FILIP1 CSRP2 RPS28 ARL2BP STX1A JUND ARF3 HSP90AB1 UTRN COX5B OPA1 VDAC3 IQSEC1 COPS8 AZIN1 SPARCL1 ZNF385D SYTL2 RAB3B TBC1D15 SLC26A10 OR6D1P IDS NGRN SERF2 TUBB3 MTRNR2L6 AC244489.1\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "cortical layer 2-3 excitatory neuron B" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MT-CO1 CHN1 SYT1 MT-CO3 MT-CO2 MT-ND4 ATP2B2 SNAP25 NRGN MAP1B TSPYL1 ATP1B1 SERPINE2 MT-ND3 ENC1 MT-ND1 TOLLIP CALM2 PRNP SLC17A7 ACTB CALM3 VSNL1 NPTN MT-ND2 MT-CYB ZBTB18 PJA2 FAIM2 IPCEF1 MT-ATP6 GPM6A CNTN1 WASF1 MORF4L1 PRKCB NDFIP1 CALM1 CCK MTPN SERINC1 GDI1 RTN4 MTRNR2L1 PLCB1 KLC1 TMX4 SYN2 PTK2B HOMER1 OCIAD1 PGAM1 ZFAND5 EIF4A2 ARPP19 RAB3B RAB11A MTRNR2L12 SNX3 NCAM2 AP2M1 GAPDH PPP3CA SPARCL1 NRCAM FKBP1A MSMO1 LMO4 KIF21A LMBRD2 PPP3CB ATP1A1 BIRC5 HNRNPA1P40 RTN1 ATP5B GSK3A NCDN ARL6IP1 NGFRAP1 SYT4 TUBB4A RP11-195F19.5 PKM GNG3 SYNGR1 PNMA2 ITM2C VAMP2 DPP6 TBR1 ENO2 NAPB TMSB10 PRUNE2 TPD52 CA10 CADM3 ASAP2 CDK14 ACTG1 PHYHIP EHD3 SYT13 STMN2 APLP2 NDFIP2 COPG1 ELAVL4 COL5A2 CCDC85B GRIN1 DNAJC6 PCSK1N RGS4 ARF3 CKB WBP11 PRDM8 ZCCHC12 HSP90AB1 NAP1L3 MTRNR2L6 SCD5 YWHAH LMO3 PIK3R1 PREPL PRKAR1B TPI1 BSG FTH1 SYNPO NECAB1 ATP1A3 DMTN CAMK2D ACOT7 TERF2IP ATP6V1E1 SERPINI1 PSD3 APP MARCKS GABRA1 NFE2L1 TMTC1 TUBA1B RTN3 ANO3 PPP2R4 ATP9A PIN1 YWHAG EIF1B RAB5C TUBB2A CD63 UCHL1 BASP1 CDK5R1 SCN1A PCDH17 CFH ARFGAP2 RP11-111M22.2 NDUFA5 SCN2B SEPW1 IDI1 PI4KA CTSD GPRC5B DCLK1 FJX1 RAP1GAP2 ATP6V1F PRDX2 NGEF ARHGDIG MT-ND4L ATP6V1A SPRYD3 YWHAB PAQR8 FAM127A BAI2 MFSD6 BEX4 MPC2 MDH1 DIRAS2 CTNND2 VDAC1 OAT ARHGAP35 NAT8L ATOX1 TUBA1A TSPAN7 MAPRE2 GLUL APLP1 CPE GNAQ MOBP DYNLRB1 SKAP2 PPTC7 BSN CLTA B3GNT1 ATP6V1C1 COL12A1 TCEAL2 SLC25A4 UBA52 RAB40B RLIM NDUFC2 DUSP1 SLC8A2 MTATP6P1 PCDH19 RAB3A PPP2CB BHLHE40 C1ORF95 COX17 CACNA2D2 STX1A ASAP1 NUAK1 NAP1L5 GAP43 ATP6V1B2 MMP24-AS1 ACTR1A MAPRE3 ERH SEZ6L2 DCTN1 EID1 TPRG1L VSTM2L CPNE4 RAB2A RTN4R SLC2A1 ZNF365 TUSC2 NELL2 WASL PSMC1 FAM134A NCEH1 STMN4 NDRG4 SNX10 ARL6IP5 TRAPPC1 FABP7 CHMP4B HMGCR PTGER3 STMN3 TMEM150C TMEM155 DCC NTNG1 NPTX1 RAB7A OAZ1 PNMA1 DIRAS1 TMEM70 VDAC3 MLF2 YJEFN3 BAG4 UBE2V2 SCN3B LPPR4 KCNK1 OPA1 SYNGR3 NCALD MAST3 SARAF CDH8 ITFG1 SYT5 ZNF574 CDK5 NPTXR EPHA6 TMSB4X KCNC2 BEX1 LHFPL3 DPYSL2 B3GALT2 NDUFC1 PNMAL2 SLC6A17 MTRNR2L8 NOV MAPK1 ATRN SIRPA DNAJB9 CHP1 RPL35 ACP1 VGF MMD MAP4 APBB1 FSCN1 SQLE SLC25A5 VSTM2A RHOA RCAN2 IGSF21 ATP6V1G1 LZTS1 PRKAR1A PPP3R1 HDDC2 RAB6B RAPGEF5 SLIT1 CHL1 PELI2 CRYM PPIA TMEM59L SLC9A6 DBNDD1 TUBB4B PEA15 LYNX1 CLSTN1 CADM2 PPP1R9B CA11 APEH TMEM35 TSC22D1 PPP2CA HSPBP1 RHEB NDUFB11 ESYT1 RAB3C PTMA PGM2L1 FBXO2 SLC30A3 SLC12A5 RPL31 ATP5A1 UQCRH PLD3 KIF3C PSAP CMAS TAGLN3 FAM3C UBE2M CLU ISCU ATPAF1 ADAM23 RPL15 SNRPN CAP2 KCNMB4 SPOCK2 KCNV1 WBP2 OLA1 JUNB HOPX CTBP1 C1ORF115 PEBP1 NAP1L2 DDN RPL19P18 CAMKK2 SV2B TGOLN2 UBQLN2 GPR98 NREP COX5A ARPC4 SYT11 NDUFA4 OLFM1 UQCRC1 CCDC154 MTCH1 HMP19 ATP5G3 PET100 RPL8 YWHAZ CCDC184 RHOB TPPP OXR1 OPCML FBXW11 EGR3 NARS ATP6V0E2 ATP2B4 CLIP3 EFNB1 ATP5E GUK1 CSDE1 INA RPL3 PDP1 MZT2B BTBD10 DYNLL1 SUMO1 PELI3 PPP2R2C ANXA6 CAMK4 GADD45GIP1 DNAJB6 GLRA3 PPP1CB SLC25A6 EGR1 ATP6V1G2 IDS NUDT4 ATP6V0C NSF RP11-20I23.1 BSCL2 TUBB PCDHA4 PCDHA10 PCDHAC1 PCDHA9 PCDHGA10 PCDHGA5 PCDHGA6\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "cortical layer 2-3 excitatory neuron B" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MT-CO1 SNAP25 MT-CO2 MT-CO3 MT-ND4 CHN1 PPP3CA MT-CYB MT-ND2 ENC1 VSNL1 GDI1 MT-ND1 RTN1 RTN3 ATP1B1 RTN4 TSPYL1 SYT1 LMO4 MT-ND3 SYTL2 VAMP2 MT-ND5 PRNP LMBRD2 MTRNR2L1 ZBTB18 PDP1 ATP2A2 CSDE1 SPARCL1 NECAB1 CCK SERINC1 PREPL IPCEF1 LMO3 WASL PRKCB ATP6V1B2 SNCB NGFRAP1 CALM1 GUCY1B3 PPP3R1 APLP2 DKK3 PHYHIP NCDN HNRNPA1P40 PEX5L TMEM130 CALM2 GPM6A CTSD ATP2B2 TRIM37 SLC17A7 RPL31 MT-ATP6 ATP9A NEFL INPP5F CPLX2 PRKACB GPX4 SLC9A6 CREG2 TSPYL4 VSTM2L CDK5R1 RGS4 ARL6IP1 SMS MTATP6P1 ZFAND5 APP CDK5R2 NRCAM CORO2B LDB2 PSAP ARHGDIA ACTR10 DCLK1 PPIA OR6D1P DPYSL2 EPS15 SLC30A3 CLSTN1 IDS NEGR1 SYT11 OLFM1 THY1 BSN TSC22D1 GNAQ PNMA2 TUBA1B TM2D3 CDK17 UQCRC2 ISCU AK5 GAP43 PLCB1 RAB6A OCIAD1 CAP2 HK1 JUND NDRG4 PKM BASP1 CAB39 SCN3B SV2B MAP4 CLU KIF1A SARAF NCEH1 EFR3A STMN3 YWHAG ARL6IP5 RP11-111M22.2 EIF4A2 GNB1 FXYD6 CDK14 TMEM59L CADM2 BEX1 SEPW1 RP11-20I23.1 ATP6V0C NR1I3 PI4KA RPL35 PRDM1 RAPGEF5 ATP5A1 AP1S2 SERPINE2 MAP2K4 RPL12 MZT2B STXBP1 RAB2A TESPA1 EIF4G2 TMSB4X MTRNR2L12 FBXW11 PRKAR1B KLC1 ARPP19 SYNJ1 SPOCK3 EID1 RAB40B YWHAB ATPAF1 FAM131B PJA2 ZNF350 CTNNB1 CTBP1 ATP5E SCN1A TOLLIP PRUNE2 SYT17 PVRL1 HSP90AA1 SERPINI1 TLN2 SUMO2 SULT4A1 APLP1 C1ORF115 UBL5 NRF1 SLC24A2 CNTN1 MYL12B CKB CMAS WDR47 UBC RGS12 SIGIRR WASF1 TPT1 YAF2 CDH22 TAGLN3 CDC42SE2 RNF11 OPN3 LINGO1 PPP1R9B TSPAN7 CFH YWHAQ FAT3 HMGCR ARL2BP PCDH8 EIF1 ISCA1 MPC2 JOSD2 PRDX2 ITM2B NPAS3 PCMT1 C1ORF52 DMTN MTPN PLS3 VGF NME1 YBEY PAM TERF2IP CADM3 BAI2 UCHL1 MORF4L1 C14ORF2 CBX6 SEZ6L TBCB RPL18A RRAGA TMA7 NPTX2 PCDH19 ELAVL2 CAPNS1 RPS5 HTR2A SEZ6L2 ENSA YWHAH PPP1CB ATP1A3 MRPL15 EGR3 SUCLA2 MPPED1 VDAC1 FAM219A ASAP1 WBP11 PNMAL1 GRIN2A CABP1 OPA1 FKBP1B WSCD1 FBXO2 RPL41 TUBB4A RPS10 SLC16A11 C7ORF50 ARHGAP35 FAM96B ARPC4 DUSP6 DIRAS1 COPS7A SCAMP5 ACTB PTPRS HPCA SEPT1 SRP9 HMP19 PPTC7 XX-CR54.1 SLC1A2 SLC39A10 OAZ1 NDRG3 PAFAH1B2 SPRYD3 FAIM2 SERF2 SDCBP MAPK1 GAPDH TEX2 CAMK2G PHYHIPL NPTX1 COX7C CYCS HNRNPH2 ATP6V0D1 TOMM20 RAB3C DNAJB6 CLTC COL24A1 ACP1 DPP6 CNTN6 KIF5A MTRNR2L6 PNMAL2 C12ORF49 PNMA1 FKBP8 UBQLN2 DNAJC6 FJX1 PGM2L1 NDFIP2 STMN1 NPTN MTRNR2L8 SYNPO SAMM50 CHGB JUN H2AFZ NDUFA13 PSMD2 GPR37L1 CX3CL1 PIK3R1 PET100 RPL36A UBA52 LANCL1 SNRPN GMFB CHL1 TGOLN2 CAPZB F8 NSF APOLD1 RNASEK-C17ORF49 TUBB3 ATP6V1G2 BIRC5 RPL21 PCDHA4 PCDHAC1 PCDHA10 PCDHA9 PCDHGA10 PCDHGA6 PCDHGA5\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "cortical layer 2-3 excitatory neuron B" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: ATP1B1 RPL37A GRIN1 CLSTN1 GPM6A PREPL RPS15 MT-CO1 NDUFB8 RPL38 SYT11 CA11 RPL31 CALM2 SNAP25 SV2B PRNP MAPK1 RTN4 RPL21 NRGN CHN1 VAMP2 PTK2B PPP3CA SUB1 TBC1D15 PLCB1 RTN1 RP11-111M22.2 RPL23A TSC22D1 ARPP19 MTRNR2L1 SLC39A10 CDK5R1 ATP5B TMSB10 RPL6 TMSB4X PEBP1 MT-CO2 NDUFB2 ITFG1 FTL SUMO1 RPL41 YWHAZ MT-CO3 SH3GL2 PDE1A SDCBP COL5A3 CALM1 PIK3R1 OLFM1 MTX3 PRKACB RPL3 CACNB1 HS6ST3 UQCRB IDS ELMO1 RAB3B SYTL2 DNAJC21 SCN1A TMA7 COX7C C1ORF115 NGRN CLPTM1 NDFIP2 NDUFA4 PIP4K2A SERPINE2 ATP5J TMEM14A PRDX5 APLP1 FIBP GUCY1B3 NAPB MTATP6P1 PGD RPL13 KIFAP3 ZBTB45 PIEZO2 CPE WASF1 MT-ATP6 WLS TENM3 NDRG4 PHYHIP ATP5E CCDC85B GDI1 RPS27A NR4A1 RPL35 CRYM UBL5 ATP6V1B2 BEX1 RPL13A MT3 CDH6 UBA52 C7ORF50 ACTR10 SYT1 SCAMP5 MTG1 HOMER1 SEZ6L PAM PPP2CA PBXIP1 ATP6V1E1 HINT1 CTBP1 NCDN KCNAB2 MT-ND3 USMG5 EPB41L3 FAM127A S100A6 RAB2A CRIM1 RPL7 KCNC2 FLT1 LAMA4 PSD3 EPS15 SNAP91 NUDT21 NGFRAP1 SERINC1 KLC2 ZCCHC17 SMIM13 APLF SERP2 DGKG RBX1 SLC22A17 RAB40B CBLN4 MT-ND4 CNR1 GNAQ SKAP2 TESPA1 PFN2 CADM2 COX4I1 GNG2 TMEM59L SAMM50 STXBP1 ARPC4 PACSIN1 RPL32 CCK ARL6IP1 VSNL1 MT-ND2 CREG2 ATP2B2 ZFAND5 UROS SUMO2 NELL2 GDA NREP DLD ENC1 MARCKSL1 RTN3 RPL11 THYN1 PEG10 RNF11 PET100 KIF1A UQCRH GOT2 BIRC5 PTPRN SMAP2 LMBRD2 RP11-147I3.1 MT-ND1 CLU DIRAS2 UBA1 HSP90AB1 PCDH19 CLTA C19ORF53 TOMM7 SPOCK1 OPA1 UBE2M NDUFA11 DDN CHCHD2 LMO4 PGK1 MOXD1 YJEFN3 C18ORF61 TPPP CAMK4 COX7A2L RAP1GAP2 NDFIP1 SNRPN TUBB2A TMEM130 CERS6 MAP7D2 STK24 NDUFB3 MAP2K2 TCEA2 BEX2 HPCA EZH2 GORASP2 CAP2 RPL15 CAPZA2 ZNF703 ATP9A KLHL5 GRIN2A ATP6V1G2 ATP6V0C TUBB3 AC244489.1 RP11-20I23.1 NUDT4 MTRNR2L6 APLP2 ZNF385D\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "cortical layer 2-3 excitatory neuron B" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: RAB3B RP11-111M22.2 AC244489.1 SYTL2 BIRC5 ATP1B1 RPL41 PEA15 RPL26 NRGN OCIAD1 RPL13A CABP1 MAP1LC3A CFH SNAP25 ATP5J ENO2 RPL35 NAPB CKB PDP1 TSC22D1 RPL17 RPL38 RPL7 C1ORF56 SERPINE2 RPL32 CALM1 RPS28 TMSB4X COX7A1 SCN1A PRKCB RPL3 NAT8L RPS27A CRIP2 GUK1 PLCB1 RPL23A SCN3B SARAF EPHB6 SLC12A5 EIF1AX CALM2 TMSB10 VAMP2 RPL37A IDS ZNF385D PLD3 UBE2V2 GHITM MT-CO3 TRMT112 TSPAN7 CACNB1 CNTNAP5 TMEM158 PCDHGA5 C1ORF52 TRHDE ZBTB18 PSMD8 PTGDS BCAP31 NDRG2 CYFIP2 FIBP RCAN2 CAMK4 YIPF3 FAM96B COX7C LRRIQ1 SLC22A17 NDUFA13 COX6B1 ATP1A3 SAMM50 MLF2 MAP7D2 HCN1 RPL10A C2ORF80 LLGL2 DYNLT3 NDFIP1 MYL6 NMNAT2 PITHD1 IQSEC1 H2AFZ RTN3 C20ORF24 SYT5 RPL31 LL0XNC01-16G2.1 SLC24A2 COL9A3 RPL12 RAB6B CTNNA3 SUMO2 MAP2K1 ATP5G2 TXN DPYSL2 CALM3 COX4I1 GPM6A ATP6V0B ALDOC DDN MT-ATP6 RAB40B STMN4 SV2B USMG5 MTCH1 BRINP3 REEP5 PRKCG CEND1 KCNC2 HPRT1 ATP5I TSPYL1 KCNAB2 HINT1 CHN1 RGS12 RPL36A DYNLL2 RORB NCDN RPL11 NGFRAP1 GNB1 YWHAZ SPON2 APLP2 BAG4 RPS5 FKBP4 PRNP ANXA6 MRPS21 ITPR2 C14ORF2 HSPB7 ATP5G1 WBP11 TALDO1 CCK ZNF365 ELAVL4 RP1-228P16.1 PDE1A GDI1 NAA38 PIN1 TMEM65 APOD LAMP5 MT-CO1 SGK223 CAMKK2 WASF1 MT-ND4 UQCR11 UQCRB NDUFB1 ASPDH MAST3 VPS35 RTN4 ATP1A1 MT-ND1 UQCRQ PGM2L1 MORF4L1 LMO4 CLTA SLIT1 RAP2A CALN1 RAB11A RASGRF2 MORF4L2 PNMA1 TMEM179B RPL15 ACTB PHYHIP EIF1 TMX4 HAPLN4 HN1 DNAJC6 CLSTN2 NPTN BEX1 NFIA FILIP1 ARL6IP1 PPP2R2B UCHL1 TUBA1A RPL39 TLE4 COL5A2 ARPP19 ATP6V1A FTH1 JAKMIP1 THY1\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "cortical layer 2-3 excitatory neuron B" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: RPL31 RPS27A RPL37A RPL38 ATP1B1 TMSB10 RPL26 RPL36A EIF4A2 COX4I1 SNAP25 BIRC5 RAB3B SYTL2 RPL6 RPL13A DMTN MT-CO1 PIK3R1 CKB UQCR10 PREPL RTN4 RGS12 OAZ1 CALM1 NUAK1 ARL8A NDUFC1 STMN1 RPS28 CDH22 SYT1 SERPINE2 BASP1 SLC12A5 RPS3A PFN2 NPTX1 PPP3CA AC244489.1 TUBB4A PDE1A ASPDH OR6D1P PPIA TKT SLC17A7 MT3 RGS4 RP11-111M22.2 RPS15 NECAB1 ESCO2 ARFGAP2 IDS NR1I3 UBB CCDC158 PCDH19 OLFM1 GPX3 RPL10A NRCAM SLC7A1 NDUFB4 LIG1 MTPN SLIT1 SSBP3 MAP1B NPTXR FIS1 PRDM8 WBP2 LINC00086 TUBA4A FAM19A2 NDUFA4 HSP90AB1 HSP90AA1 BANF1 GSTO1 TPI1 PRDX5 TSPYL1 NEGR1 TSC22D1 ANO3 UQCRB PI4KA RILPL2 PPDPF ZNF385A PGK1 MRPL15 KCNV1 MTCH1 NGEF COX7B CDC37 RAB3IP CLU LIMK1 WBSCR17 TOMM7 DCTN3 FAM134A NGFRAP1 MT-CO3 GALK1 OXR1 BEX1 RCAN3 NDUFA13 NDRG3 FAM3C MCHR2 SUSD4 RPL35 RPS10 CRYM PAFAH1B2 NDUFAF3 AKR1E2 KIF3C RPL17 TPT1 CTSD IDH3A SERINC1 RPL12 REEP2 PRKCG FBXO2 TUBA1A PNKP ENOPH1 CTBP1 SARAF MAPK8IP2 UQCRC1 TBR1 ATP1A1 RAP2A DPP6 TCEAL5 RPL21 CABP1 SLC25A6 PEA15 DNAJC5 PFDN1 OCIAD1 YWHAQ PHYHIP NRGN RTN1 RAB6B SLC1A2 GPM6A TMEM151A GDA CAPZA2 RPL7 CHL1 CHN1 POLR2M TNNT2 PGM2L1 RPL23A SERPINI2 TCEB2 CLTC BAI2 SKP1 PET100 CCT5 SEPW1 HPCA CYB5R3 EDF1 FTH1 LMO3 ATP5G2 LMO4 PTPRS RPL15 AHNAK2 UBA1 HSPB1 ATP9A PPP1CB MFN2 PLD3 EIF1 YWHAH TMEM59L ATP2B2 DNM3 SYN1 ACOT7 SLITRK1 COX7C ATP5G3 BTBD1 SLCO2A1 COX7A2 NAT8L CX3CL1 APLP2 COX7A2L PNKD GAPDH EFR3A ATP6V1C1 CALM3 EPS15 ARF5 ENSA RPL32 RPL3 SUMO1 MT-ND2 SYN2 ATP5E MIF ALDOA RNASEK-C17ORF49 NUDT21 RPL41 NSF TBC1D15\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "cortical layer 2-3 excitatory neuron B" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MT-ND1 MT-CO2 MT-ND4 SYTL2 SNAP25 MT-CO1 MT-ATP6 MT-ND3 CHN1 MT-CYB MAP1B APLP1 ENC1 HOPX LMBRD2 MAPK1 GRIN2A FAM84A MT-ND2 RP11-219A15.1 NDUFA4 TM2D3 GUCY1B3 PTPRN SLC30A3 MT2A RPS15 ATP2B2 UBE2M TOMM7 CCK PSAP MT-CO3 DKK3 CNTNAP5 EIF4A2 ATP9A SYT17 SERINC3 EFR3A PDGFRB ATP5F1 AK5 MFN2 RPL12 MAL2 SERINC1 PPIA MTRNR2L1 ATP6V1C2 OPCML TESPA1 DCLK1 TMSB4X SUB1 NDUFA8 RPL31 RAB40B PRKCG SLC38A11 BAALC COX7A1 LINGO1 ATP6V1F TOLLIP HSP90AA1 WSB2 ENO2 RGS4 GNG3 DNAJB6 ALDH5A1 ALS2CR12 CHMP5 CALM2 NPTX1 SERPINI1 SRP9 NGFRAP1 CLTC PSMD12 NRGN FTH1 ATP5A1 POLR2K CHL1 LMO3 RHBDD2 ATXN10 MTND1P23 LGI3 WASF1 NAT8L TSC22D1 LRP1B MRFAP1 STMN1 UQCR10 MARCKS SV2B CDS1 ETS2 CAMK2G CALM3 DYNLL2 KRAS SPARCL1 PRKCB MDH1 RNF212 PDP1 RP11-111M22.2 POLR2I PPP3CA YWHAZ GPM6A UBQLN2 CDH13 IMMP1L ATP1B1 PLEKHD1 DNAJC21 TBC1D15\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "cortical layer 2-3 excitatory neuron B" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: RAB3B CHN1 SNAP25 ENC1 RP11-111M22.2 RTN4 BIRC5 NGFRAP1 BEX1 NECAB1 NR1I3 OR6D1P CREG2 DCLK1 SEPW1 LPPR4 GRIN2A APLP1 NRGN HOMER1 SYT1 PRKCB PPP3CA ZNF385D ARFGAP2 LAMP5 TESPA1 ARPP19 NFE2L1 MGP PRKACB PDP1 FAIM2 PLCB1 ARL6IP1 PSAP OXR1 PGM2L1 ATP1A3 RPL38 LMO4 GAPDH NDUFB7 MT-CO1 RTN1 AC244489.1 TSPYL1 GRIN1 VAMP2 PREPL SLC17A7 TCEB1 PRNP HNRNPA1P40 PTGES3 AK5 ENO2 MAST3 SERINC1 ITM2C TMA7 PGAM1 ACTB LMO3 C1ORF115 MT-CYB CEND1 PHYHIPL TSC22D1 CABP1 RAB1A CALM1 ATP5I SLC1A3 MT-CO3 THSD7A ATP1A1 CPLX2 SNCA FXYD6 FKBP1A GRINA TBC1D28 HSP90AA1 RGS12 PIN1 TMX4 HN1 PTPRS CDK5R1 FAT3 GDI1 HSP90AB1 CCK MTRNR2L1 UQCRQ CSDE1 VSNL1 CKB CPE CADM2 CLU NREP UQCRC2 SCN3B BASP1 MT-ND2 CACNG3 SH3GL2 NPTXR RTN3 BSG KIAA1045 CALM2 PSMD12 STMN1 NDUFS5 GTF2H2C_2 CFH RP11-20I23.1 ATP6V0C SSTR2 KLC1 MT-ATP6 GSG1L PNMAL2 DCTPP1 MRPS21 PGRMC1 ARHGAP29 BSN PEBP1 TUBA1A CERS6 CIAPIN1 CTNNA2 TXN TMEM147 MRPS7 NNAT YWHAG LINC00086 BTBD10 TMEM179B NDUFA13 SUB1 SRM CD59 LIG1 ISCA1 NOV AC010731.4 CAMKK2 CNTN1 ATP6V1B2 GPM6A CBLN4 RPL6 PRKAR1A ZBTB18 ADAM23 NDUFB1 AP2M1 ATP6V1F PCDHA4 PPP3CB MAL2 GPCPD1 PCGF1 TRIM37 PRUNE2 KCNC2 RAB3A OPA1 MAP1A RABAC1 FAM19A2 BANF1 TSPAN7 MAP2K4 SH3RF2 SLC12A5 ATP5G2 ATP5G3 SSTR1 NUTF2 TRAPPC1 SKP1 KCNV1 RPS28 ATP5B TMEM59L AURKAIP1 PRKAR1B ATP6V1C1 ATP5G1 TRMT112 SLC7A1 RPL39 PCMT1 PSD3 MAPK1 MAPRE2 HS6ST3 MAP4 PIK3R1 KIF1A FGF12 CHMP5 NELL2 PTK2B AP1S1 SERPINI1 MGST3 VGF RPL37A PSMA7 NCDN ONECUT2 RNASEK-C17ORF49 OCIAD1 LAMTOR5 B3GNT7 GABARAPL1 NDUFC2 DNM3 AP2B1 COX6B1 PI4KA WSB2 BAD CADM3 DPP6 ARHGDIA EIF4A2 OLA1 MLLT11 SYNJ1 NAPA TLN2 ZNF365 ANXA7 COX7C GABARAPL2 TPPP CTU2 PDLIM5 TERF2IP NSF MTUS1 HDLBP HMP19 WASF1 PHPT1 SCN1A EGR1 GPX3 TOLLIP PSMB7 SELT TCEA2 CHL1 YWHAZ DCTN1 MT-ND4 SNRPN RAPGEF5 RPL26 ATP6V1E1 STXBP1 SLC7A8 CACNB1 CDH8 MAP1B UROS LDB2 PMEPA1 STX1A MRFAP1 SLC25A5 KIFAP3 CAPZB TCEB2 RGS4 YAF2 PPP2R2C FAM134A PTPRN TUBB2A CNR1 ATP1B1 NAP1L2 RPL18A ADCYAP1 MYL6 MORF4L2 UROD SNCB NDFIP2 TP53I11 AZIN1 MSMO1 BEX5 CAMK2G SLC22A17 FAM3C HOPX PLD3 IDI1 HPCA DNAJA1 NAT8L ANO3 NEFL EGR3 SNX17 ITFG1 SGK223 RAB6A UQCRB SYT4 CLEC2L RPS6 GOT1 ATP6V0B WBP11 CHCHD2 SNX10 RPS27A PCDHGA10 RPL31 WARS FAM84A SH3RF1 UQCR10 RPL23A SERINC3 NRCAM SSPN PGK1 WASL KCTD12 APP RAB3C EPHB6 ZFAND5 ALDOA PSENEN GHITM PCBP1 OPCML DYNLL1 ATP5E CYFIP2 MT-CO2 YWHAQ REEP5 SIRPA PDE1C GPR26 TMSB10 TSPYL4 CAPNS1 NDRG4 ARF3 CORO2B NDUFA5 PAK1 FTH1 ATP6V1G1 SOD1 PHYHIP GPNMB YWHAH PRIM1 PEG10 GPX4 VDAC1 SCN2B NEUROD2 GLRA3 NEFM GNAQ ATP6V0E2 MAP2K1 TRIM36 DIRAS2 MT-ND5 FXYD7 TUBB4B PSMD2 SMIM13 SULT4A1 NGRN BSCL2 MTRNR2L6 GABARAP ARF5 RPL13A TUBB RP11-219A15.1\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "cortical layer 2-3 excitatory neuron B" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MT-CO2 MT-CO1 SNAP25 CALM2 RPL38 SYTL2 TMSB4X MT-CO3 MTRNR2L1 RPL31 CHN1 CALM1 RPL37A COX7C ATP1B1 ENO2 RTN3 VSNL1 RTN4 MT-ND4 MT-ND2 YWHAB RPL36A HSP90AA1 RTN1 CYCS ACTB PEBP1 MT-ATP6 SCOC MT-CYB PSAP NDFIP1 STXBP1 RPL32 SCN1A PRNP GPM6A RPL39 RP11-111M22.2 SLC22A17 RPL41 PPP3CA CALM3 YWHAG RPL26 MFGE8 VDAC1 RPL35 AP2M1 PSD3 YWHAZ MAP2K1 MT-ND3 ENC1 SPARCL1 TPD52 MT-ND1 UQCRB SYT1 STMN1 CADM2 OAZ1 NRCAM SLC39A10 EIF4A2 CTNND2 GRIN1 RPL11 BASP1 NPTX1 PPP3CB MTRNR2L6 SERPINI1 RPL21 MAST3 SEPW1 STXBP6 PFN2 ARPP19 PRKAR1A SKP1 NAPB PSMD12 PDE1A DKK3 LYNX1 SCN3B SEZ6L NRGN FAM131B CDK5R1 PLCB1 FKBP1A PGRMC1 TSC22D1 LAMTOR5 NCAM2 CYFIP2 PJA2 ATP2B2 GUCY1B3 NEFL PRKAR1B H2AFZ NREP ISG15 RPS3A NDFIP2 CBX6 TUBA1B OLFM1 RP11-20I23.1 NPTXR ATP6V1G1 SLC12A5 DSTN ATP6V0C TM2D3 GNG2 SIRPA RAP1GAP2 ATP5A1 CHMP4B PRKCB ATP1A1 MAP1B PCSK1N RAB6B NCEH1 COX4I1 ID2 ARL6IP1 NECAB1 CLSTN1 PCDHA4 YWHAQ FABP3 CCK EIF1 RAB6A CTBP1 RPL17 PHYHIPL SERINC1 NCDN DMTN TPT1 DYNC1I1 BSCL2 IDS ATP6V1G2 HPCA SSBP3 MAP2K4 SCD5 DCLK1 C6ORF1 CLTA PREPL SYT13 CPLX2 TRIM36 SYT4 AP2S1 RPL12 RAB1A CNTNAP5 NPTN OR6D1P SPRYD3 EIF4G2 DYNLL2 RPL23A RPS28 WBP2 MAP1A PNKD UBB EIF1B COX7A2 PRUNE2 YWHAH TOMM7 STRAP RAB40B MT-ND4L FAM84A DPP6 C19ORF70 OSGEPL1 SLC17A7 RPS12 C1ORF52 LINGO1 NGFRAP1 HK1 SLC7A8 UQCR10 PCDH8 TRIM35 SNCA ADAM23 TOMM20 RAB3A KCNMB4 GJA1 FASN KLC1 SDCBP SNX3 SULT4A1 GLRA3 RPL8 TSPYL4 FAM3C PPP1CB PEG10 SMIM12 MRPL51 PAK1 PLD3 ATP5I MMP24-AS1 MYL6 PARM1 POLR2L PEA15 PRSS3 CBLN4 RPL13A CREG2 WSB2 ATP5G2 PRDX5 VSTM2A FAM19A2 PGM2L1 CLTC LMO4 LSM4 MTATP6P1 MRFAP1 RPS4X S100A16 TUBB4A NDUFA11 C14ORF2 C19ORF53 PRKCE GLUL TSPAN7 RGS12 MRPS21 ATP1A3 UQCRC2 GAPDH TUBA1A THY1 RHEB BCL11B PRKCG SPON1 TOX CRIP2 NDUFB4 GRIN2A CD99L2 IGFBP5 SQLE HS6ST3 C6ORF141 EDF1 ATP5E NKIRAS1 TGOLN2 FAT3 BRK1 NDUFA4 EID1 TBR1 RNF11 MLLT11 ARF3 SUMO3 UBA52 MTND2P28 ZBTB18 COPS8 NDUFB8 PI4KA CAMKK2 SLITRK1 RPS15 CAMK4 MT3 ATP2B4 AK5 GPR88 MYEOV2 VAPB SNX10 ISCU HOPX RAB4A JAKMIP1 NSF CLIP3 BEX5 TBCA MAP1LC3A MFN2 RPS27A DYNLRB1 TMEM59L SLC24A2 PPA1 SV2B IQSEC1 MMD FTH1 SYT11 HSP90AB1 SPOCK3 MRPL37 CSDE1 SYN2 SCAMP5 SAP18 CNTN1 RCAN2 TCEAL2 ARL6IP5 TMEM147 RRM2B GOT1 FKBP8 BLOC1S1 PKM PRDX1 SERPINE2 MAGED2 CHMP5 RAN RTN4R RPL7 APOL6 MTRNR2L12 PITHD1 ZFAND5 RGS4 LGI3 RPL15 PTPRN BSN NUDT21 NDUFAF3 ENSA NAP1L2 PPP2CA TUBA4A UQCRQ NDUFB10 RPS6 EIF1AX RP11-195F19.5 CPE USMG5 LMBRD2 EPS15 PIK3R1 SUSD4 MORF4L1 COX6C ELMO1 SELT BNIP3 GSK3A GNB1 OST4 SNAP91 RPL13 CDH13 SUB1 ELAVL2 MTRNR2L8 SYNGR3 DIRAS1 WDR47 HTR2A TMEM130 KIF1A CADM3 SERINC3 OPA1 HMGCR NELL2 NFE2L1 UCHL1 CORO2B TMEM117 CRKL SPOCK1 ARL4D COX7A2L BEX4 ATP5O MT1X MFSD6 COX5B CH17-53B9.2 PDP1 SRP9 VAMP2 CCDC124 MRPL20 AP2B1 SLC25A22 PNMA1 COL24A1 RAP1GDS1 RBX1 BSG SLC38A1 PNMAL1 PTMA PSMB3 MIF RPL3 NGRN TUBB2B KRT17P6 TUBB2A ARF5 AC244489.1 RPS26 GTF2H2C_2 RAB3B\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "cortical layer 2-3 excitatory neuron B" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MT-CO1 CHN1 MAP1B MT-CO3 SNAP25 CALM2 SYT1 ENC1 MT-ND4 RTN4 MT-CO2 CCK GPM6A EIF4A2 CLSTN1 NRGN CALM1 THY1 CKB SPARCL1 RTN1 MT-ATP6 IDS GDI1 ARPP19 VSNL1 TSPYL1 PPP3CA APLP1 ATP1B1 RTN3 PRNP MT-CYB TSC22D1 CALM3 TMSB4X TMSB10 GAPDH TUBA1B HSP90AA1 ACTG1 YWHAH ACTB CLU NECAB1 LMO4 ZBTB18 MT-ND2 NDFIP1 YWHAG RGS4 ATP6V1B2 YWHAZ PKM OXR1 OLFM1 FTH1 STMN1 PPIA SLC17A7 PRKCB TSPYL4 PTMA ATP2B2 UBC TUBB4A KLC1 PREPL SCN3B CDK5R1 HSP90AB1 GRIN2A WBP2 BEX1 NRCAM MTRNR2L1 PJA2 PHYHIP NEFL SERPINE2 SARAF MT-ND1 CNTN1 ATP9A NDRG4 CREG2 BASP1 PGM2L1 SERINC1 ARL6IP1 WASF1 DYNLL1 PIK3R1 NDFIP2 RAB6B SLC39A10 NGFRAP1 SERPINI1 ELAVL4 HMP19 PDP1 MAPK1 PRKAR1A ATP2A2 MTATP6P1 OCIAD1 PLD3 ZFAND5 PRKACB TAGLN3 PFN2 MTRNR2L12 GOT1 DPYSL2 HMGCR FAIM2 FKBP1A SNCB STMN2 TSPAN7 SYT11 NPTN DMTN CADM2 CHL1 GABRA1 ENO2 VAMP2 SYNPO PCDH8 LMBRD2 MAP2K1 PLCB1 ATP1A1 APP NUAK1 RP11-20I23.1 CTNND2 MT-ND3 CAPZA2 NUDT4 GHITM RPL15 ARF1 SUMO3 YWHAB ATP6V0C STXBP1 CEND1 PNMA2 SNRPN NSF RAB3B SYTL2 MAST3 TMEM59L HS6ST3 AP2M1 COX4I1 LINGO1 CPE TESPA1 TPRG1L SLC8A2 CYFIP2 SLC22A17 PRKAR1B PGAM1 ARL6IP5 SNX10 KIFAP3 C1ORF115 PPP2R1A CAP2 UCHL1 RAN TOMM20 GRIN1 TPPP DPP6 NCAM2 EGR3 EPB41L3 TMOD2 C14ORF2 CAB39 MAPRE3 RHEB CTNNA2 RPS15 SYT13 SUMO2 SEPW1 CTSD TUBA4A CFL1 PACSIN1 EFR3A GRINA SYN2 NDRG3 GDA MTPN SLC12A5 NCDN HOPX PEX5L CBX6 NAPB TMEM130 CA11 EDF1 RAD23B PPP2CA MLLT11 PTPRN SV2B DNAJC5 NPTXR RAB3A ARF3 DDAH1 SCAMP5 SCN1A EID1 MDH1 NMNAT2 ITM2C STMN3 EIF1AX FAT3 PI4KA GAP43 TUBB2A SPOCK1 PSAP LMO3 MAPRE2 RAB4A TPI1 FAM127A PCDH17 UQCRFS1 PPP3CB SYT4 RPS28 SERINC3 ANO3 VDAC1 WSB2 VGF SKP1 BSN SLC9A6 GUCY1B3 LANCL1 KIF5A TMX4 PEBP1 MTCH1 KCNAB2 YWHAQ ATP6AP2 VSTM2L TPT1 DIRAS2 OAZ1 ATP6V1F ATP6V1A STMN4 ITM2B ATP6V1E1 UBE2N HOMER1 DNAJB6 TUBA1A ZNF385D MTRNR2L6 EIF1 PELI3 SRP14 CMAS PSD3 INPP5F TBCB SYNGR1 SYNPR TOMM7 HTR2A ARHGAP35 COX7C SCD5 AP2B1 NGEF TRIM37 ARL8A MYEOV2 VPS35 PNMAL2 RPL41 APLP2 CAMK4 SAP18 NELL2 ATP5B AP3S1 AK5 RAB11A NAT8L DYNC1I1 PPP2R2C GMFB NPTX2 FARSA RAB2A RAPGEF5 PAM COPS7A CERS6 LDB2 PNMAL1 BNIP3 RAB3C SYN1 CABP1 SIRPA RPL32 CYCS PPP3R1 GNB1 ARHGDIA PPP1CB TGOLN2 HSPA8 B3GNT1 C1D SUB1 IPCEF1 EIF4G2 TOLLIP PTK2B RHBDD2 DCTN1 BCAP31 WBSCR17 SPCS2 NCALD ARL8B MRAS CSDE1 CX3CL1 RPH3A SSBP3 MGST3 DCLK1 APBB1 SEZ6L2 TMA7 TMEM65 ALDOA CDK17 JUND HEY1 NDUFA1 CD63 DNAJC21 MBOAT7 MIF ARFGAP2 MRPL20 NDUFB5 EPS15 D4S234E SGK223 GPX4 COX6A1 RPS6 CCDC85B SYT5 B3GALT2 PSMC5 CTXN1 CLTC FXYD7 KIAA1045 EIF1B CPLX2 FAM19A1 RCAN2 MAP1LC3A GNG3 BSG ELMO1 ZNF365 PRKCE SELT ENO1 ISCU SLC6A17 UQCR11 CCT5 NDUFS5 CHCHD2 ASAP1 PRKCG SMAP2 SH3BGRL3 CLTB ATP5J2 SPOCK2 SCOC KCNK1 PITHD1 COX17 DDN RPL31 NDUFB1 RPL39 FXYD6 KIF3C IMMP1L PTGES3 VDAC3 NAP1L2 RAB6A CHMP4B ATP6V0B RPL6 MAP4 IQSEC1 AES UQCRH JUN GFRA2 MAP1A INA MAP7D2 FAM134A SMIM13 DNM3 PPP2R2B MAPK8IP2 PFN1 STX1B NDUFC2 PCDH19 KIF1A ARF5 UHMK1 CDK5R2 NRN1 OXCT1 EGR1 SUMO1 MCHR2 LGI3 GADD45GIP1 CAPZB RPL3 ANXA6 SYNGR3 SNCA SLC38A1 SPTBN1 CHP1 SLC24A2 REEP2 NAP1L5 SKAP2 PCMT1 EHD3 KIF21A CLIP2 NARS STX1A OLA1 CADM3 FSCN1 MBP CARTPT MLF2 SULT4A1 UQCR10 PRDX3 CORO2B ACOT7 PMEPA1 LPPR4 KCNC2 KCNAB1 JAKMIP1 UBE2QL1 ATP1A3 MT3 REEP5 PRDX2 RP11-111M22.2 TUBB3 NGRN RELN NHP2L1 GNAQ TUBB AKAP12 MT-ND5 BAG4 REPS2 ATP5J MYRIP MTRNR2L8 SNAP91 CLIP3 ETFB ATP6V1G1 CD99L2 PSMD2 NEUROD2 HDLBP PEA15 CBLN4 COX7A2 NFIA LIN7B TMEM132D COX5B BSCL2 CAMKK2 ONECUT2 BEX5 DUSP1 PPM1A UBQLN2 ATPAF1 CDKN2D MZT2B WASL UBE2E3 RP11-631M6.3 ADAM23 MRPL15 NCEH1 ITFG1 MORF4L2 NPTX1 GPR116 RAP1GDS1 ENSA ATP5C1 NEFM LGALS1 MORF4L1 NUDT21 NBL1 TCEB1 NEGR1 LSM4 MARCKS RPL37A EPHB6 PPP2CB FAM3C ZCCHC17 NHP2 ABRACL PSMC1 IFT52 DYNLL2 EGFL7 PCSK1 PTGER3 DYNLRB1 RAB40B VAPB NDUFB8 HSPBP1 RABAC1 SPRYD3 SH3GL2 BEX2 CTBP1 USMG5 LHFP CNR1 RNF11 ETV5 TMEM191A C1ORF52 ATP6V0E2 CDC37 RPL35 DHCR24 RANBP1 NAPA HCN1 SYNJ1 GABARAPL2 CDS1 C14ORF132 UROS TCEB2 MPPED1 PFKP ABHD8 BRK1 DLD DYNLT3 RAB27B SMS ELAVL2 PNKD BAI2 MAP1LC3B UBA1 TERF2IP TCEAL7 SNCG MYBPC1 WDR47 COA3 ATP5I PFDN1 RTN4R STRAP PEF1 GPR37 KCNA2 PAK1 FIBP UBE2D2 ETS2 PPP2R4 TENM3 CLTA MSMO1 TUBB4B BIRC5 TKT AZIN1 CDK14 C20ORF24 PGK1 NAA38 HSPE1 COQ10B OLFM2 NEK7 RPL26 PAFAH1B2 DEXI EPDR1 RPL13A ACLY TM2D3 DNAJC6 EXTL2 QDPR SLC35B1 PFDN4 DNAJA1 HS6ST2 RBX1 RPS2 NFE2L1 PIN1 RSL24D1 KCNA1 CD59 UBL5 KCNH5 PGRMC1 CDH13 DNAJC4 GPR98 PCSK1N RPS3A MYL6 ATP5E TMEM155 IQCK PITPNA MMP24-AS1 SLC7A8 GUK1 CA10 NDUFB2 HN1 CDC42SE2 SCN1B FAM219A CDH8 MRPL51 COX7A2L RPL23A TF MIR6723 SPHKAP RASGRF2 MAP2K4 PEG10 LAGE3 RNASEK-C17ORF49 LMBR1 HRH3 KCNV1 MDH2 EFHD2 SYT17 OPCML GAD1 LIMK1 RP11-195F19.5 SH3BGRL2 PHYHIPL HPRT1 SEZ6L TMEM158 ATP5G2 STAG3L5P SLC25A22 RP11-529H22.1 ATP5F1 HPS6 SCG2 NREP MAOB BCL6 COX5A MFN2 H2AFZ HK1 THOC7 TP53I11 PARM1 RPS12 C9ORF16 SYT3 MRAP2 WARS DBNDD1 GRB14 PRDM8 SLC25A11 DKK3 CYSTM1 CSRP1 TPD52 PSMD8 FAM84A CALB1 ARL2BP SOX4 NINJ1 RP11-133L19.3 C4ORF3 YAF2 TLN2 POU3F1 TMEM230 COL5A3 MRPL37 FKBP4 MAGED1 HSPB3 ATP6V0D1 TRAPPC1 FGF12 KCNC3 PRSS3 PET100 RASL11B DGUOK TPGS2 SLC1A2 NDUFA4 GABRQ ATP5G1 NDUFA11 RPS19BP1 TOMM70A NGB SLC7A5 ATP5G3 GNG2 ATP5O FKBP8 PLS3 HDDC2 CLPTM1 RPL38 C16ORF93 KLF2 HSPA4 RGS12 OST4 FBXW11 IGSF21 PHB UBE2F RLIM GSK3A CPLX1 ZBBX NPM1P30 CCDC184 DSTN PDLIM5 AP1S1 MPI EPHB1 CHGB LAMTOR1 ZNF503 DKK1 UQCRC1 RAB11FIP5 NAP1L3 TMEM70 STUB1 ACP1 SERP2 CCDC25 SRD5A1 PRUNE2 YJEFN3 ABCC12 COPG1 RNF208 SLITRK1 PCBP1 GLRA3 BCL11B NOS2 VEGFA RPL17-C18ORF32 PSMB5 HPCA SLC25A5 TSPYL5 CISD1 RAB1A DPY19L1 HCN2 HINT1 NDUFA13 ARL4D TXNDC17 BAALC SPRN ATP6V1C1 TSC22D4 RASGRP1 DRAP1 MANBAL TMEM14A CNP GPR150 PTGS2 AP2S1 DCTN3 PNMA1 FKBP1B NEUROD6 C7ORF50 HMGCS1 BTBD1 OPA1 C2ORF80 LRP1B OPN3 COTL1 C6ORF141 SUCLA2 FBXL16 KLHL12 NR1I3 WNT5A VGLL3 SARDH MRPL52 DUSP6 ARL1 MAL2 SEMA3C RPS5 SLIT1 FASN CCDC124 TCEAL5 HPX PAMR1 NDUFA2 RFC3 HNRNPH2 MAP2K2 SOSTDC1 TRMT112 CDH22 UQCRC2 RFK CABYR STK39 RAP1GAP2 RAB5C CITED2 ATP5A1 RPL36A LYNX1 ADD2 PIP4K2A GTF2B GUCY1A3 FAM71E1 ERH KLHDC3 ALCAM MED10 POLR2K SNX22 DNAJB9 FBXO2 ATP2B4 TBR1 CAPNS1 DLC1 KRAS CXXC4 SRM SNRPE TMEM258 PRDX5 GABARAPL1 ASNA1 PINK1 CRIP2 RHOB SSTR1 SLC39A3 PRELID1 ATP6AP1 GSTT1 CACNG3 CRH COX7B ATOX1 TCEAL2 COPRS TMEM151A UQCRQ IDI1 SPARC TMEM35 UQCRB SLC30A3 SNN GPR158 PSMC3 POLR2M AMIGO2 CAMK2G CACNA1H NDUFC1 C12ORF49 POMP EEF1A2 BANF1 MIEN1 KCNF1 GABARAP CHMP5 RPL26L1 MAGED2 ENOPH1 CYC1 PSMA7 HAPLN4 RPL13 SPON2 COL11A1 TCEA2 BEX4 FAM96B SELM RPL8 C19ORF10 RPL11 PVRL1 SLC25A4 RHOA TLE4 CNRIP1 ISCA1 RPL7 C19ORF43 TRIB2 PCYT2 CNTROB ALDOC SOD1 HIGD1A RPL17 ATP6V1G2 AC244489.1 HNRNPA1P40 PSMB3 RPL18A PCDHA9 PCDHA4 PCDHA10 PCDHAC1 PCDHGA10 PCDHGA6 PCDHGA5\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "cortical layer 2-3 excitatory neuron B" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MT-CO3 MT-CO1 MT-ND4 MT-CO2 MT-ND3 MT-ATP6 MT-ND1 MT-CYB MT-ND2 SYT1 CHN1 MTRNR2L1 ENC1 SNAP25 MTATP6P1 CALM2 THY1 NRGN MTRNR2L12 RNF11 FKBP1A SLC17A7 DPYSL2 TSPYL1 SYTL2 PEX5L PRNP CKB SERPINE2 NDFIP2 RGS4 SERINC3 CA10 PPP3CA CLSTN1 CCK PJA2 RTN3 PREPL MTRNR2L6 MTRNR2L8 USP5 LZTS1 YWHAH PRKACB SMIM13 NPTXR TSC22D1 EID1 GDI1 ATP1A1 GRIN1 CFL1 SYN1 KCNK1 GPM6A VSNL1 FAIM2 YWHAG VGF YWHAB EGR1 DPP6 OLFM1 NARS SARAF SYN2 NECAB1 MLF2 NPTX1 LMO4 CD59 RPL31 SNRPN PCDH8 PLCB1 NDRG4 ARPC4 RASGRF1 TKT MAP1B RTN1 RPL13 PHYHIP JUND WASF1 CTNND2 ATP2B2 DNAJC6 ATP6V1B2 ACTB CREG2 ADD2 CLU MAPK1 SLC9A6 C1ORF115 AK5 NCEH1 FAM134A MT-ND5 PPP2R2B RTN4 DUSP6 GABRA1 CALM3 CAPZB DHCR24 AP1S1 SYNGR1 SEPW1 YWHAZ RHBDD2 GRIN2A LINC00086 PPP2R1A TUBB2A ATP6V0B SPARCL1 MT-ND4L AES PPP1CB PTK2B TUBB4A ASAP1 STX1A ARPP19 HMGCR ATP1B1 PCDH17 RAB3A PGAM1 NUDT21 STMN3 PEBP1 PKM SMS TRIM37 PIK3R1 VAMP2 APLP1 GAPDH BSG ZNF365 CAP2 BASP1 SCN3B OAT DNAJC21 MIR6723 YJEFN3 CBX6 RPL26 DIRAS1 COX4I1 NPTN MAST3 PCSK1N SULT4A1 KCNA1 APP SH3GL2 SYNJ1 ACTG1 CPE BCL11B TUBA1B PSAP SLC6A17 EGR3 NCOA4 TPD52 HSP90AB1 GAP43 DYNLL2 KREMEN2 TMEM155 ARL6IP1 SSBP3 LIMK1 PCDH19 KIAA1045 BAG4 NDUFB3 MZT1 SQLE BIRC5 MANBAL GPR26 NELL2 GPX4 SLC22A17 GCHFR STMN1 CRTAC1 SPOCK2 CNTNAP5 KLC1 UQCRB OXR1 SLC8A2 SUMO3 SERPINI1 YWHAQ ARL1 TMSB4X ATP5I NSF CBLN4 GMFB TUBA1A TOLLIP DYNLL1 IDI1 GRINA GNB1 KLC2 SNCB RAB7A ARPC5L GLRA3 B3GNT1 PRUNE2 ARL8A STRAP PCMT1 TPT1 TSPAN7 HK1 MT3 ATP1A3 CPLX2 SV2C BDNF WARS NR4A1 CIAPIN1 CADM2 NDUFA13 STXBP1 CSDE1 LDB2 PTGDS ENSA NDUFB5 PTPRS SNCA RPL37A SLC25A4 CAMK2G DCTN1 BCAT1 TPRG1L CDKN2D SPOCK1 TERF2IP MTX3 MAP2K2 KIF5A TSPYL4 ITM2B KRAS ALDH5A1 GHITM CHL1 NDFIP1 GUK1 MYEOV2 COPRS CDK5R1 TMEM59L TM6SF1 SCN1A FBXO2 CX3CL1 CNTN1 ATP2A2 MAPRE2 ATP9A MDH2 BSN LYSMD2 PRKCB CAB39 HEY1 SV2B PTMA MAP1LC3A REEP5 SKP1 VAMP1 NUDT4 CRIM1 PRDX3 HSP90AA1 CALM1 PEA15 SNAP91 SLC24A2 UBQLN2 MYRIP PI4KA ZFAND5 DMTN RBX1 TMSB10 DDAH1 HS6ST3 UQCRFS1 PRELID1 KIF1A PPP2CA FTH1 ACTR1A ENO2 PRKAR1A NDUFA5 ATP5C1 LRP1B GSK3A NEFM APEH CORO2B SLC39A10 MAP2K4 MLLT11 DKK3 CHMP4B RPS12 FASN ZBTB18 SLC39A3 TUBA4A MARCKS TUBB4B TMEM130 PFKP CTSD PDP1 SELT PITHD1 SPRYD3 CMAS FKBP8 ZMAT2 PHYHIPL FAM127A FOS NREP TAGLN3 SNX3 JUN ATP6V1E1 NPTX2 ANGPT2 ALDOC ATXN10 RAB27B LINGO1 PPP3R1 RPL41 EDF1 UBE2D2 TOMM20 CTBP1 CYFIP2 KCNF1 PPP2CB PPDPF NAPB MAOB CCDC85B PGRMC1 TEX2 MTCH1 DCLK1 RPL18A NDUFS5 EHD3 CLIP3 CAMK2D LMBRD2 DIRAS2 AMIGO2 CPLX1 IDS NGRN RP11-20I23.1 ATP6V0C PGK1 RPL7 RP11-219A15.1 SERF2 ARF5 ATP6V1G2 PLEKHD1 PCDHAC1 PCDHA10 PCDHA4 PCDHA9 TBC1D15 RAB3B\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "cortical layer 2-3 excitatory neuron B" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: RPL37A RPL26 MT-CO1 RPL36A UQCRB RPL32 RPS4X RAB3B RPL23A ATP1B1 MT-CO2 MT-CO3 CLU RPS27A PPP3CA RPL13A ARPP19 RPL38 SLC1A2 PTGDS GDI1 SEPW1 RPL31 IDS MT-ND4 SPARCL1 RTN4 SERPINE2 PEG10 KIF1A CHN1 SCN1A NPTXR RPL21 CYFIP2 PACSIN1 CALM1 RPL3 EIF4A2 ENO2 NDUFA4 RPS15 ENO1 RPS6 AAMDC STMN4 SCN3B ATP5I CHL1 NRGN ENC1 SLC17A7 UCHL1 RPL41 COX5B YWHAZ NDUFA13 THYN1 SNAP25 PREPL GPM6A OPA1 CAMK4 OAZ1 FTH1 CABP1 MAPK1 COX7C SYN2 YWHAH PRKAR1A HSD17B6 RPL17-C18ORF32 RPL17 DIRAS2 AK5 PRDX3 COX4I1 CBX6 ANXA6 SERPINI1 SLC12A5 HEPACAM LIN7B SCD5 NDUFB8 PEBP1 NGFRAP1 MAPRE2 LMBRD2 WIF1 RPL13 ASAP2 GRIN2A NKIRAS1 TPT1 CLTC STK39 TMEM59L TSC22D1 RPL11 ATP5E WBP2 SPRYD3 NDFIP2 MORF4L2 PRKCE APLP1 GNG3 PEA15 CCK ENSA RHEB CCDC115 CRIP2 PRNP YJEFN3 ATP5G3 EIF1AX VDAC1 APOE HSPB1 SLC1A3 PCDH19 TESPA1 HS6ST3 HSP90AA1 NDUFA5 FAM163B ATP1B2 FOSB ATP2A2 SLIT3 C19ORF43 FGFR3 CAPZA2 LDHB PRKACB ATP1A3 NPNT THSD7A SDC4 SLC24A2 SUCLA2 NRCAM GABRA1 PPP2R4 BANF1 SMS MOBP RPL7 CFL1 ARHGDIG BTBD10 WASF1 TMSB4X EIF1 SKAP2 NSF LPPR4 PITPNA PSAP RSL24D1 SKP1 NAP1L2 KLC1 PKM ARL1 RARRES3 ATP5B FXYD6 SERINC3 IQSEC1 PPDPF GPR56 C9ORF24 PCDHGA5 RAB1A PTPRS RPS19BP1 MAGEH1 PDP1 RPL8 SYT11 SYNGR1 BEX1 ADCYAP1 NCALD NDUFS5 RPL18A DDAH1 C1ORF115 SYT1 TCEAL2 CST3 RPL6 NELL1 RTN1 ATP2C2 TCEB2 TSPYL1 MRPL51 NDRG4 RAB3IP PCP4 BGN CBLN4 ATP2B4 MDH1 SMIM13 NDUFB3 SEPT1 ARL8B RHBDD2 MT-ND2 RP11-44D5.1 GTF2H2C_2 SDCBP NDUFS6 SOD1 VSTM2L RPS3A PSMD12 TEX40 C1ORF52 SARAF CNTN1 ATP1A2 MTRNR2L1 HMP19 PRKCB CNR1 ACTB TMEM70 HSP90AB1 CMAS KLHL5 CRKL KIF21A TIGD4 RPS10 PSD3 MAPK8IP2 LMO3 MRPS7 ANAPC13 PSMD8 MAP1LC3B ATP6V1B2 DKK3 GUCY1B3 MAP1B STMN1 RELN SERPINA3 BSCL2 ARL6IP1 MORF4L1 MTRNR2L6 RNASEK-C17ORF49 DNAJC21 TBC1D15\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "cortical layer 2-3 excitatory neuron B" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: SNAP25 ENC1 GRIN2A SYT1 CHN1 RP11-111M22.2 MT-CO1 RTN4 NRGN PRKACB RPL38 RAB3B RPL37A GPM6A ARPP19 SLC39A10 RTN3 GRIN1 CALM3 MT-CO2 ATP1B1 UQCRB MT-ND4 RPL36A CADM2 DPYSL2 RPL41 ATP2B2 CDK17 PRNP SERINC1 SERPINE2 ZNF385D PPP3CA SCN3B TOMM20 CALM2 ATP6V0B MT-CO3 ZBTB18 MT-ND3 ARHGAP35 NAPB ANO3 NPTXR RAB2A RPL35 APLP1 CCK SLC17A7 PRKAR1B GNAQ UBA52 DYNLL1 CITED2 BEX1 CLSTN1 YWHAH SH3GL2 KIF5A TERF2IP CAP2 VSNL1 MT-CYB PAK1 JUND MAP1B ARFGAP2 HNRNPA1P40 NR1I3 PCDHA4 HMGCS1 HSP90AB1 NGFRAP1 RHOA PJA2 TPPP COX4I1 SLC30A3 PLD3 PTMA HPCA PREPL YWHAG SNCB SUMO1 MAPRE2 TUBB2A CNR1 AK5 MORF4L2 OCIAD1 COL24A1 PSD3 STMN1 GUK1 BSN ATP5I TMSB4X HS6ST3 GNB1 YWHAB TMOD2 RPS15 CYP1B1 ACTB ARL6IP1 NCEH1 ARL8A RAB6A ATP5A1 TUBA1B PPA1 NAPA ZNF365 TCEAL2 ATP5E RPH3A CISD1 RPL31 SLC8A2 SLC25A5 FAM84A ATP2A2 TSPAN7 NDRG4 CAMKK2 GAPDH COPS8 MT-ND2 CDKN2D SYNGR1 ITFG1 ELAVL2 GDI1 CABP1 SHARPIN HDLBP PNMA2 CDH8 TMA7 RGS4 KCNK1 NPTX1 EIF4A2 LMO4 ATP5C1 CREG2 BAI2 MMD SERPINI1 TSPYL1 ZFAND5 STXBP1 ATP1A1 HMP19 TCEB2 NDFIP2 FXYD6 SARAF GRINA CALM1 MED10 PPP2CB EPB41L3 HSP90AA1 RP11-20I23.1 ATP6V0C BSCL2 PTCHD4 YWHAZ SPRYD3 GHITM UBE2N ARL4D CAMK2G THSD7A CCDC183 MTRNR2L1 PEBP1 STMN3 SYT4 NFE2L1 CAMK4 SLC25A4 OPA1 TIGD4 PNMAL1 RPL11 NCBP2-AS2 RP11-664H7.2 CHMP5 PEA15 CTNNB1 IGSF21 RAP1GAP2 OR6D1P MTPN BDNF NDRG3 NFIA NDUFA4 MGST3 MAGED2 ACTR1A MYEOV2 EDF1 DNAJC5 RPL15 VAMP2 NDUFC2 IQSEC1 PIP4K2A CAPZB CRYZ STMN4 KCNAB1 PDP1 GNG2 DSTN PCBP1 NEUROD2 NEFL S100A6 CCDC85B CPLX1 CYC1 YJEFN3 CA4 SLC12A5 UQCRH RAB3A VSTM2A OLA1 BSG PSMC1 PPP3CB PACSIN1 C1ORF115 CAMK2D CAPZA2 NDUFA5 PRDX3 KLC1 TPD52 TMEM150C NDUFA11 SSBP3 HOMER1 CCDC74A CYCS PTPRN2 MAP4 EFHD2 PKM MAP2K2 TMSB10 SPTBN1 NELL2 CRYM FAM134A MT2A MT-ATP6 SNN ATP9A NDUFA12 PVRL1 MCHR2 UBC MT-ND4L UBE2F PIK3R1 CNTNAP5 COX7B NDFIP1 MAST3 HDDC2 RAPGEF5 WBSCR17 DDN RNF11 PPP3R1 TUSC2 RPS6 FAM19A1 MANBAL SUB1 ATP6V1C1 ZBBX EDN1 TGOLN2 GABRA1 SLC9A1 OXR1 NDUFB2 ADCYAP1 DPP6 PSMA7 COPE CLTC ANXA7 COX7C RTN1 PI4KA RPL13A NCAM2 ZDHHC12 NAT8L PMEPA1 STX1A KLHDC3 RASGRF1 GUCY1B3 SCOC EPHB1 OAZ1 KLHL12 NRCAM TUBB4A CERS6 FGF10 MYL6B TMEM59L KIF21A ARPC4 DIRAS2 SLC25A6 RPS4X RAB11A COX5B NDUFB1 MTX3 DNAJB6 PHYHIP OLFM1 NGEF NDUFS5 RAB6B FASN SYN2 FGF12 TMX4 CLDND2 ATP6V1F FAIM2 TUBD1 APP UBE2D2 CA11 TBR1 SGK223 OPCML RPS27A CADM3 WASF1 SIRPA CD99L2 PGM2L1 AP2M1 UCHL1 LZTS1 RLIM SPOCK2 CNRIP1 ACTG1 TOLLIP DIRAS1 ATP6V1G1 BASP1 ARL6IP5 RHOB IGFBP5 CALN1 FAM127A ACTR6 MT-ND5 HSPA8 NUDT21 CKB HNRNPH2 RPL6 LMO3 RASL11B MDH1 SLC22A17 ENO2 RPS2 KCNAB2 GDE1 NDUFB8 MYOM2 WDR4 ATP6AP1 NEGR1 MRPS21 LPPR4 TUBA4A NTNG1 CPNE8 KCNV1 VAT1L SULT4A1 CHL1 UQCRC2 PPIA ONECUT2 PTGES3 INA SOX9 PHPT1 TSC22D1 MAP2K4 CDC42SE2 SAP18 KCNC2 RPL8 NOP10 TUBB4B FSCN1 RPL21 ALDOA RPL17 RPL3 MIF IDS MTRNR2L6 RPL17-C18ORF32 NSF RPS3A NGRN RP11-219A15.1 PCDHGA6 PCDHGA10 PCDHGA5 TBC1D15 SYTL2 CFH\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "cortical layer 2-3 excitatory neuron B" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MT-CO1 MT-CO2 CHN1 SNAP25 GPM6A MT-CO3 SYT1 MAP1B ATP1B1 YWHAG RTN4 ENC1 PPP3CA CALM2 MT-ATP6 MT-ND4 SLC17A7 RTN3 SYN2 TUBA1B MT-CYB RTN1 CLU EIF4A2 MT-ND2 SERINC1 SNCA PHYHIP PRNP GDI1 CNTN1 NECAB1 TBC1D15 CLSTN1 MTRNR2L1 BASP1 CHL1 PREPL TPPP VSNL1 RP11-111M22.2 ZFAND5 NAP1L3 RGS4 LMO4 TSPYL1 ACTB ATP6V1B2 NPTN LPPR4 ARPP19 YWHAH PRKACB ATP2B2 PRKAR1A PSAP DMTN DIRAS2 KIF1A GAPDH ARL6IP1 TSC22D1 APLP1 DPP6 PJA2 SCN3B CALM1 SLC12A5 SYN1 CCK MT-ND1 MT-ND3 YWHAZ NCEH1 PPA1 NRGN TUBB HSP90AB1 LMO3 YWHAB KIF5A C1ORF115 CPE PKM MTATP6P1 STMN1 SYNGR1 MTRNR2L12 NAPB MAGED1 ENO1 MTCH1 VAMP2 SLC8A2 TCEB2 SLC39A10 PSD3 APP CAPZA2 SERINC3 ACTG1 BEX1 NPTX1 ATP1A1 STXBP1 CREG2 MSMO1 BSN BRK1 SYNPO OPCML B3GNT1 MLF2 MMD SYT4 OXR1 NPTXR LGI3 CHGB PPP2CB DPYSL2 SPARCL1 CLDND1 TSPYL4 TOMM20 ATP2A2 SUMO2 EGR1 RP11-219A15.1 MAPRE2 VSTM2L CTNND2 CNTNAP5 SNAP91 RPL36A KCNK1 CDK5R2 TUBA1A MTRNR2L8 GRIN1 RASGRF2 MAP4 JUND SCN1A CDK5R1 KLC1 HSP90AA1 AK5 NELL2 GNG2 PCDH8 SPTBN1 FAM127A DNAJC5 C1D UCHL1 NEFL STMN2 COPRS CPLX2 NRCAM FAIM2 ITFG1 OLFM1 SCAMP5 SEPW1 IDS FLOT2 SH3GL2 TLE4 MAPK1 RAP2A PRKCG TMEM59L GSKIP SLC30A3 NAT8L CMAS EPS15 PEX5L CSDE1 ACTA1 NDRG4 ZBTB18 CADM2 ARF3 UBE2M NGFRAP1 CORO2B WDR47 SPOCK2 RAB2A NDFIP2 TUBB4A SARAF PAFAH1B2 WBP2 MORF4L2 COPS8 RPL15 DCLK1 TMX4 PNMA1 NAPA NUDT4 PSMC1 LMBRD2 MAP1LC3A SERPINI1 GNAQ RCAN2 CABP1 PPIA MTPN UBE2QL1 GDA TOLLIP CD99L2 WASF1 RPL12 TMEM130 CAP2 KCNAB2 PIK3R1 DKK3 SCD5 CCDC85B CDH8 MTRNR2L6 ZNF385D RAB6A GHITM VPS35 EIF1B S100A6 ITPR2 NDUFAF2 PNMAL2 RASGRP1 C6ORF1 SLC9A6 MPP1 TKT ARFGAP2 CYFIP2 PSMD12 GABARAPL1 BSCL2 IQSEC1 CD63 RPL35 ATP6V1C1 MTX3 NCDN GPX4 MAST3 SLC25A6 MAPRE3 FABP7 CAMK2N2 SYNJ1 RHEB ARL6IP5 ENO2 MZT2B CHMP5 BEX5 RPS10 ATP5I INPP5F CHP1 RBX1 EIF4G2 ATP5B PGM2L1 MAP1A NWD2 RPL37A SULT4A1 AP2M1 MAP2K1 TUBB2A RAB4A TSPAN7 POLR2K CDC42SE2 HMGCS1 ASAP1 HMGCR GPCPD1 JUN GPR88 ANAPC13 ALDOC EIF1 SOD1 SNRPN MPPED1 SLC38A11 LRP1B SV2B SGK223 MT3 PRDX2 MAP7D2 ARHGAP35 REPS2 PRKAR1B FAM84A ITM2B THY1 ATP5J SYNGR3 CBLN4 PAK1 UBQLN2 RPL23A GUCY1B3 CADPS2 HN1 PLCB1 PCDHB4 DNAJA1 INA ARPC4 C4ORF3 RAB3A STUB1 BIRC5 RPL11 FBXL16 CHMP4B UBE2N SUMO1 ARL8A FTL PCDH17 ATP6V1A TUBD1 C1QBP GPR158 LZTS1 NHP2L1 BTNL9 ARF1 POLR2L NDRG3 APLP2 CREB5 NFE2L1 LDOC1L PFN2 VDAC2 SUB1 OCIAD1 ACTR1A DYNLL2 EPDR1 TM6SF1 RPL38 CYC1 EXTL2 CALB1 CDK17 PRKCB DDAH1 PDP1 EPHA6 BNIP3 GOT2 PLD3 EID1 C1ORF52 TMEM35 CTSD KITLG SGCD CAMK4 PTK2B MB21D2 LYNX1 IDH3A IQCH CTBP1 TBR1 NDUFA13 KCNH5 GSTP1 AP3S1 ZNF365 MARCKS CALM3 VAMP1 FAM219A COPG1 SPRN DDN FAM3C AZIN1 PINK1 SH3BGRL3 FKBP1A FABP5 TMTC4 ROBO3 PRDX3 IPCEF1 CIAPIN1 HAPLN4 PEA15 KCNAB1 RPS28 MT-ND5 HDDC2 CLTA BAALC RAB3C RRAGA WBSCR17 CPLX1 MDH1 FXYD7 NAP1L5 KCNC2 HSPA8 ANO3 SPON2 NDUFA4 COL5A2 CERS6 CEND1 RND3 RPL39 RORB AES LIMK1 FGF12 OAZ1 SERPINE2 NDFIP1 FXYD6 ARL8B MAP1LC3B PSMC5 PNMA2 KCNV1 REEP2 PPP2R1A RHBDD2 BCKDHB VDAC1 TOX2 ENSA FBXO2 ARL4C MT-ND4L GTF3A RAN MAGED2 RPS12 TAGLN3 CAPZB NCAM2 STX1A MLLT11 CBX6 TSPYL5 CCDC158 CDK14 PRPS1 TPGS2 HMP19 PPTC7 CACNB1 FAM131B TM2D3 PGAM1 REEP5 PSMA7 NDUFS6 FARSA CRYM BEX2 EIF1AX IFI6 DNAJB9 ATP2B4 ROBO2 CDH13 EEF1A2 EPHX2 TUBA4A LL0XNC01-16G2.1 HEY1 SPARC CFL1 SYT11 EPHB6 FTH1 CNRIP1 CNR1 CNIH3 RPL31 NUAK1 PEBP1 DYNLL1 PRELID1 WSB2 GRINA DNAJB6 GNB1 ITM2A YWHAQ GABRA1 IGSF21 PTPRS PPP1CB CLTB ADORA1 CLPTM1 STX1B NGEF RHOB NDUFS5 KIFAP3 ADD2 CPNE8 SKP1 MDH2 BSG DCC RAB3B SYTL2 TUBB3 NGRN ATP6V1G2 MBOAT7 PCDHGA10 PCDHGA6 PCDHGA5\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "cortical layer 2-3 excitatory neuron B" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: RAB3B RP11-111M22.2 SNAP25 RPL31 PCP4 RPL21 RTN3 RPS15 TMEM59L PPP3CA COX6C RTN4 VSNL1 RPL32 CALM1 ACTB SPARCL1 MT-ND4 CHN1 CALM2 TMSB4X GRIN1 TOMM7 HSP90AA1 ARL6IP1 SKP1 HSP90AB1 FTH1 MT-CO3 NRCAM MT-CO1 GAP43 YWHAG PGM2L1 YWHAZ SEPW1 CLSTN1 PIK3R1 TCEB1 WBP2 RGS4 RPL11 GPM6A KCNAB2 TMSB10 MT-CO2 PRNP ID2 EIF4A2 RPL37A OLFM1 RPL38 NRGN RPS27A MRPL55 STMN1 PSAP RPL12 ZNF385D RP11-219A15.1 PGK1 MLLT11 FAM127A PEBP1 GRIN2A CALM3 CABP1 HS6ST3 SRP14 RPL7 LIG1 COX6A1 TSPAN7 CDK5R2 ELAVL4 DKK3 KITLG ATP5I PRKACB REEP2 TRIM37 ARPP19 INA APLP2 ATP5B PSD3 EIF4G2 APBB1 SYT1 MAP1B COX6B1 LMO3 OAZ1 RASGRF1 ENC1 TUBA1B ACP1 NECAB1 PAFAH1B2 PREPL SERPINE2 VAMP2 NDUFA4 SMIM13 SCN3B NDUFA13 NDFIP1 CLU TCEA2 NELL2 PSMC5 RP11-195F19.5 OPA1 RAB40B SSBP3 APLP1 TSPYL1 SARAF ENSA SLC39A10 RPS28 CYCS RPL13 RBX1 RPL26 RTN1 ARF3 RCAN2 CADM2 COX7C SERINC1 ATP1B1 MT-ND3 ATP6V1B2 MAGED1 TPD52 ATP1A1 NSF BIRC5 TUBD1 RSL24D1 WASF1 NFIA SERINC3 MORF4L2 ZBBX YIPF3 CAP2 LGALS1 FGF12 CFH RPL6 CDK5R1 NDUFA5 ATP2A2 CTXN1 STMN2 EIF1 ETV5 WASL GUK1 CDK17 TPI1 SLIT3 TXN SNCA LAMP5 PNKD FAM163B SFTPD H2AFZ CREG2 FAM3C ENOPH1 DIRAS2 ACLY ATP6V1E1 TMEM70 C1ORF115 PRDX1 MAP2K4 BAALC HCN2 DNAJC4 LZTS1 CACNG3 NAP1L2 NDUFB5 RPL39 OCIAD1 NDUFS6 LYSMD2 C2ORF80 CAPZB CCDC144NL BEX4 RPL41 FAM219A SPCS2 ERH PFDN4 GDE1 TBC1D7 PHYHIP MT-ND4L PNMAL1 MAST3 ATP4A NRN1 MRFAP1 SYT5 ATP5A1 BNIP3 PNMA1 STX1A CD99L2 PPP1R7 LMO4 SLC1A2 SPP1 CPLX2 GPR26 NCDN WDR47 PHYHIPL HBA2 DDAH1 FAM131B GDA CDC42SE2 CKB RPL13A SLC30A3 AP2S1 AC011043.1 SEMA3C PDE1A NNAT NAP1L5 TMEM160 AP3S1 TUBB2A CHL1 LINGO1 ALCAM NUDT21 TOPORS-AS1 SV2B RPL23A ATP5J TOMM20 RPL8 SPTBN1 RAN C18ORF61 JAKMIP1 DPP6 PRDX5 THY1 RPL15 AK5 CCDC85B SELT FAM174A BEX1 UQCRFS1 MCHR2 RAB3A LMBRD2 SYN2 MAPK1 PPP2CB RPH3A PLEKHA4 EDF1 CCDC58P3 PEA15 MAP7D1 ENO2 MFN2 DYNLL1 PGAM1 C9ORF16 KIFAP3 RNF208 PSMC3 SQLE MTCH1 COPG1 AP1S2 RHBDD2 PRKCB MDGA1 ITFG1 MAL2 NDUFA1 TOLLIP TLN2 BSG DPYSL2 RGS12 SEZ6L S100A6 FXYD6 HPRT1 TPT1 PEF1 PEX5L C19ORF53 NDUFS5 B3GNT1 RHEB ATP6V1C1 HINT1 SYNPO GABARAPL2 NEGR1 BLOC1S1 ATG101 LDB2 BRK1 CTC-575D19.1 SLC22A17 MARCKS FAM84A BDNF HCN1 GLRA3 GUCY1B3 NEFL ATP5E GORASP2 PENK ALKBH7 DNM3 IPCEF1 CPLX1 APP FARSA PHPT1 FXYD7 PEG10 GAPDH TMEM147 NDUFB1 NHP2L1 BAI2 TCEAL5 SNCB MRPL33 RAB6B NFE2L1 FAM134A DCTN1 MAPRE3 CA11 PITPNA NRSN2 NDFIP2 COPS8 PLCB1 PINK1 GSTP1 KLC2 TMOD2 ATP6V0B VSTM2A NPTN ATP5G2 ZMAT2 PLD3 FAM96B OR6D1P NAP1L3 NDUFA2 YWHAH HOPX GLUL GNB1 BEX2 RELL2 SYNGR1 PNMA2 RAP2A MZT1 GOT2 ASAP2 PPP2CA ARPC4 PSMD2 CMAS PSMD12 ENO1 NCALD FKBP1A SERTM1 ISCU SYT17 RPL17 ATP6V0C IDS RPL17-C18ORF32 RP11-20I23.1 EPHB6 BSCL2 RPL36A MIF ATP6V1G2 PCDHGA5 PCDHGA10 PCDHGA6\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "cortical layer 2-3 excitatory neuron B" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MT-CO1 MT-CO2 MT-ND2 MT-ND4 SNAP25 CHN1 CALM1 MT-CO3 MT-ND3 SYT1 RTN4 RAB3B RTN1 RTN3 GPM6A EIF4A2 MT-ND1 CALM3 PJA2 STXBP1 OLFM1 PRNP VSNL1 ATP2A2 MAP1B HSP90AA1 NRGN PRKCB TMEM59L PKM MT-CYB CCK SPARCL1 YWHAH TMSB4X APP MT-ATP6 NGFRAP1 ENC1 CLU SARAF TMSB10 HSP90AB1 TUBA1B NECAB1 CALM2 TBC1D15 CKB SLC17A7 PRKACB CLSTN1 GDI1 SLC39A10 STMN1 ARPP19 CNTN1 ATP9A VAMP2 PSAP RAB3A KLC1 RPL17-C18ORF32 PSD3 PREPL ACTB RP11-111M22.2 NELL2 UCHL1 ENO2 BASP1 NDFIP1 OAZ1 BSCL2 TSPYL1 TSC22D1 TSPAN7 CADM2 PTMA PPP3CA ATP2B2 TOMM20 ATP1A1 ATP6V1A CDK5R1 NEGR1 YWHAG NDRG4 ITM2B THY1 SCN3B DYNLL1 NCAM2 ATP1B1 PLCB1 TPPP NEFL PHYHIP WASF1 RGS4 PPP3CB APLP2 ATP6V0B CREG2 GABARAP RAB6B PGM2L1 RHBDD2 ITFG1 FAIM2 CAP2 FTH1 ATP5B PNMA2 PLD3 CTBP1 SYTL2 IDS FXYD6 SERPINE2 PDP1 SYNGR1 PRDX5 TPI1 SRP14 LMO3 VDAC1 ATP6AP2 EGR3 COX6B1 PRKCG PPIA TUBB2A SSBP3 SCAMP5 NAPB GAP43 ALDOA CADM3 SKP1 HAPLN4 TUBB4A LGI3 B3GNT1 SERINC1 BEX1 KIF21A PDE1A STMN2 YWHAB SERPINI1 GRIN2A MAPK1 ZBBX SERINC3 SNCB NPTX1 NFE2L1 SUB1 RPL7 C1ORF115 EIF1AX ARF1 ATP6V1C1 OPA1 MTATP6P1 FIBP DYNLRB1 PIK3R1 NGRN CFH KCNAB2 ATP6V1F BEX4 FAM219A SCD5 AP1S1 NRCAM HSPA8 ATP6V1B2 STMN3 SEC61G DNAJC6 ATP6V0E2 GDA MTRNR2L12 CISD1 SGCD CCDC85B LZTS1 ATP6V0C VDAC3 DPYSL2 PFDN1 LYNX1 CAMKK2 DSTN SLC22A17 NCALD DKK3 ARL6IP5 NDUFS5 NPTXR ITM2C RP11-20I23.1 EPS15 DNM3 VDAC2 FKBP1A PPP1CB KIF1A RASGRF1 TGOLN2 AP3S1 PNMA1 ADSS AK5 NDUFA13 SLC12A5 DNAJC5 RPS28 NAT8L CDC42SE2 BEX2 FASN RPL41 PPP2R1A BAI2 ARL8B REEP5 GLRA3 RPL13 CHL1 GOT1 STMN4 SIRPA RPS15 CLTC SUMO2 SCN1A CDK14 GMFB ANXA7 SYN2 SLC8A2 MTPN TESPA1 TMEM132D TSPYL4 NUAK1 STX1A LANCL1 HMGCR CABP1 APLP1 NAP1L2 PACSIN1 OLFM2 GUCY1B3 PCBP1 ATP2B4 ANO3 PEBP1 DCLK1 GUK1 PCDHGA10 NUDT4 PCDHGA5 ARFGAP2 KCNK1 CDK17 INA CAMK4 FBXL16 NHP2L1 TCEAL7 C19ORF70 UQCRQ MAST3 DYNC1I1 DPP6 MTRNR2L1 SV2B MAP2K4 NDFIP2 RAB1A RPS6 UBE2N UQCR10 TMA7 OXR1 TMEM155 CRIP2 RTN4R RPL15 MANBAL UQCRC2 ANXA6 UQCRH ARHGAP35 C9ORF16 NFIA BSN RPH3A DYNLL2 MZT2B GADD45GIP1 STX1B SLC25A4 DMTN FAT3 COX4I1 TAGLN3 SLC1A2 SCN1B RAB2A PPP2R4 EPB41L3 VPS35 CNTNAP5 FBXO2 CTNND2 AES FBXW11 MRFAP1 BNIP3 EFR3A SNCA TENM3 PIN1 KCNC2 C14ORF2 MIEN1 RAB3C PEX5L SULT4A1 FAM84A NPTN SYT11 CRYM UBE2V2 RPL11 FABP3 MORF4L1 RPL39 CFL1 GRIN1 RAB6A CAMK2G FSCN1 CBX6 COX7B MLLT11 PHYHIPL NRSN2 TCEA2 RPS26 PARM1 GNB1 FAM19A1 PGAM1 ENO1 ENOPH1 FKBP8 YAF2 PSMD12 RPS3A C6ORF1 CAMK2D RPL26 CHGB PFN2 PEG10 GNAQ DCTN1 TRIM37 NCEH1 CBLN4 IQSEC1 LAMTOR5 PTK2B SPOCK1 FTL CERS6 FGF12 USP5 KITLG BCAP31 NEUROD2 YWHAZ FAM127A PDCD5 TOMM7 MYL6B OCIAD1 ATP1A3 SNRPN KIF5A KCNMB4 CYCS CLIP2 TUBA1A SLC6A17 KIAA1045 SELT C14ORF132 RPL18A PTPRN2 JUND NDUFB5 KIFAP3 CTNNA2 TCEB1 RAP1GAP2 OLA1 NDUFB4 ELAVL4 EIF1B MLF2 PAFAH1B2 EGR1 ATRN PSMD2 PMEPA1 WSB2 TRIM35 GABARAPL2 CAPZA2 PET100 ZBTB18 TOLLIP EDF1 RAP1GDS1 GSKIP GRM3 PGRMC1 RAB40B SEZ6L2 C1QBP GPX1 SNX3 UQCRC1 SEPW1 C1ORF52 NMNAT2 ATP5G1 HMP19 HINT1 PODXL ATP5G3 NREP SOD1 RBX1 SEZ6L PRKAR1B RNF208 ZNF385D BIRC5 NSF OR6D1P AC244489.1 LMBRD2 HIST1H1E MGST3 MED10 PSMC3 SLCO4A1 SQLE LYSMD2 LAMP5 COX17 PHF11 RPL38 MAGED1 MSMO1 MIF RPL37A HSPE1 FIGN SH3BGRL2 ARL6IP1 FAM134A RPS19BP1 ALKBH7 TMEM147 OPCML CDH13 TRHDE RCAN2 MDH1 HSPB8 MFSD2A ARL4C AP2S1 SYNPR MRAS TMTC1 SYNGR3 PRDX3 CA10 DGAT2 ELMO1 MT-ND4L MMD INPP5F TERF2IP SCN4B RASGRF2 NDN TMEM35 RAB7A TP53I11 TBCA MTHFS SLC38A11 COX8A CSPG4 MPPED1 CORO2B MFSD6 CLMN MAL2 OPRM1 ZCCHC12 ID2 TCEB2 CORT SYT4 CDKN2AIPNL CCDC74A IDH3A NDUFA5 TXNDC17 OPN3 NDUFB1 TMOD2 REEP2 UHMK1 GHITM TMSB4XP4 DDAH1 SLC9A6 BTBD1 LINC00116 ZBTB20 RANBP1 CAB39 TMLHE SLC25A11 IL10RA ACP1 EIF4G2 ZNF365 CYFIP2 ADD2 TPD52 SCG2 LRRC59 MT-ND5 MAGED2 SYT17 KIF3C RAP2A RLIM SSTR1 CKS2 ACTR10 APBB1 LDHB PI4KA SYT13 RORB PPA1 CLDND2 KLHDC3 ONECUT2 SNX17 SYNPO RPL35 TKT PFKP RABAC1 PRKAR1A CA11 TUBB4B HSPA4 WBP11 MTRNR2L8 TAF7L HDHD1 PLS3 TPRG1L PCMT1 ATP5A1 ACOT7 NAP1L3 IGFBP5 RHOB GPR56 UBL5 CNP ATP6V1G1 TMEM14A PPP2CB RAB11A RHOA PCSK1N RASGRP1 CALB1 CD99L2 HSPB1 LMO4 MEGF11 RPL8 MAP1A C16ORF93 NEFM C11ORF31 CRKL WARS NHP2 SUMO3 MARCKS TMEM120A TRAPPC1 LAGE3 SLITRK1 B3GALT2 NEUROD1 YJEFN3 TMEM141 UBQLN2 C3ORF80 PRDX1 MBP RPL31 CDH8 PPP2CA ARPC5L BRINP3 PPP2R2C TOPORS-AS1 ATP1A2 ADCYAP1 TEX2 SNAP91 PSMA7 ARHGDIA H2AFZ FARSA GABRA1 RPS27A ACTG1 SGK223 ETFB EPHA6 HTR2A CDS1 SNAPC5 SUMO1 ISCA1 AP2B1 AMIGO2 ATG9B COX6A1 RPS12 HK1 EID1 MAPK8IP2 SYN1 KRAS FXYD7 CX3CL1 RNF11 FAM19A2 DNAJA1 CAPNS1 CCT5 ARHGAP29 PAM DLD ARF5 MFGE8 CHCHD2 OLFML2A FAM96B FOSB SPTBN1 HOPX SELM ARL1 CXCL14 CDK5 ZCCHC17 NARS NDUFA12 TXN GAPDH TIMP2 AP2M1 IDI1 GNG3 AKAP12 FAM3C TMEM258 BCL11B CD59 UQCRB ATOX1 PCDH8 THSD7A GABARAPL1 RPS4X C19ORF53 BSG ATPAF1 OAT BANF1 MMP24-AS1 MCHR2 MAOB CEND1 PTPRN LDOC1L CHMP4B RAPGEF5 ARL8A PMP2 EHD3 PAQR8 CPNE4 ADAM23 ANAPC13 CBLN1 ZFAND5 HN1 C4ORF3 MYL6 NDUFB11 SLC25A6 STRAP HMGCS1 ARC MTX3 CITED2 CA4 POLR2J C16ORF13 NAP1L5 CLIP3 COX5A HNRNPH2 CADPS2 CFL2 EDNRB CD63 PGD ATXN10 TMEM151A CNRIP1 PNMAL2 COX7A2L RRM2B PROM1 WBP2 PPARGC1A CMPK1 PVRL1 PCDH19 PSMC5 IPCEF1 SMIM13 KCNA2 UBA52 PLA2G2C SKAP2 PSMB5 MTCH1 PHB AZIN1 D4S234E BAD PITPNA MORF4L2 NOP10 WASL HPRT1 CAPZB NDUFAB1 RAB4A C7ORF50 CTSD WBSCR17 FAM149B1 NCDN EIF1 BCAT1 NDUFAF2 BRK1 ENSA RAB11FIP5 CPLX2 OST4 CCDC115 MRPL55 PITHD1 ATP5J2 NBL1 PRUNE2 BHLHE40 ATP6V1G2 RPL3 B2M TMEM191A SERF2 RP11-219A15.1 JAKMIP1 TUBB3 EPHB6 RPL36A SSTR2 TUBB MBOAT7 PCDHA9 PCDHAC1 PCDHA4 PCDHA10\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "cortical layer 2-3 excitatory neuron B" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MT-CO3 MT-CO2 MT-CYB MT-ND4 MT-CO1 MT-ND3 MT-ATP6 MTRNR2L12 CALM2 MTRNR2L1 MT-ND2 SNAP25 CALM1 PEBP1 MT-ND1 RPL31 HSP90AA1 ZNF385D SYTL2 RAB3B TBC1D15 RPL41 VSNL1 SYT11 CHN1 NCDN PPP3CA PRNP MTRNR2L8 THY1 PHYHIP RHBDD2 STMN2 CADM2 WASF1 ENO2 BIRC5 HNRNPA1P40 VDAC1 GDI1 MT-ND5 ATP5A1 CHL1 PPIA YWHAH RTN4 RTN3 MT-ND4L PREPL IDH3A APP PEX5L ANKRD20A11P PRKCB CAPZA2 RPL6 DPP6 RP11-219A15.1 CLSTN1 ARPP19 FAM134A PSAP SKP1 RPL37A RP11-111M22.2 DNAJC21 NR1I3 LRP1B SLC9A6 SNCA DSTN TRIM36 OR6D1P ATP2A2 GNG3 TPI1 HSP90AB1 UQCRHL RASL11B SPOCK2 SLC39A10 NPTX1 PFDN1 SLC22A17 LAMP5 GAPDH TOMM20 AZIN1 SLC19A1 PTMA ATP1A1 RNF208 ROBO2 ATP2B2 APLP1 MAP2K4 NDUFA12 DNAJB6 SSTR2 MAPK8IP2 ATRN CFH EGFL7 ARPC4 NDUFC2 CA11 UQCR10 KCNA1 BEX4 NECAB1 SYT1 CTNNB1 DIRAS2 MED31 AIMP2 CAPZB STK24 WASL AP2B1 OPA1 TMEM130 GLIPR1 ANO3 PELI3 FSCN1 SERPINE2 MTND1P23 CHMP5 MTATP6P1 PTPRN HCN1 GPM6A MTCH1 PTGES3 EPS15 PTPRS RLIM ACOT7 EIF1AX PTK2B NELL2 RPS27A VAMP1 BEX5 RPS2 GNB1 HOMER1 VPS35 AKAP12 RAB40B EPHA6 RGS5 DRAP1 NEUROD1 AES ELMO1 YWHAB COPS8 ATP5E GORASP2 DHCR24 EDIL3 SEPT4 ITM2B PSMC1 BAG4 MFSD6 MTRNR2L6 AP2M1 GRIN2A TMOD2 ALDH5A1 HK1 ETS2 RHOB GPR88 PCDH19 YIPF3 TMEM35 RIN3 ACTB DKK3 MLLT11 TMEM70 DLX1 TPGS2 PDE1C HOPX TNNT2 SELM CCDC154 TUBA1B NGFRAP1 CCDC169 CFL1 CCK NAA38 NEFH FAM19A1 ZCCHC17 KCNK1 WBP11 STMN4 SV2B RNASE1 OCIAD1 BCL11B PNMA2 RAB1A RAB6B NFIA GDA PNKP SERPINI1 FBXL16 RTN1 RPS28 EIF4A2 KCNA2 STXBP1 TMSB10 ZBBX NDUFB1 SYN2 CNTN1 NDFIP2 MAPK1 VSTM2A PSMD12 BEX1 SOX6 BAALC CD99L2 PCDHA10 COX17 SYT13 TMSB4X VSTM2L SERINC1 CLU SLC25A5 SLC6A1 PAM ARF1 RNF11 KIFAP3 RASGRF1 EFR3A ATXN10 GABARAPL2 WLS MLF2 TPD52 MTPN CABP1 LMO3 EIF5A2 HMGCR TOMM70A HDHD1 RPL35 SARAF YWHAG STX1A ARF5 UQCRC2 BSCL2 GABARAP RPL3 NGRN RPL21\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "cortical layer 2-3 excitatory neuron B" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: SNAP25 MT-CO1 MT-CO2 CALM1 MAP1B CALM2 MT-CO3 SYT1 RTN3 TUBA1B CHN1 SYTL2 FTH1 CCK ARPP19 ATP1B1 GAPDH TMSB4X MT-ND2 YWHAG ENC1 NECAB1 YWHAH CLU OLFM1 GAP43 NGFRAP1 ZNF385D APP RTN4 IDS MT-ND4 NRGN TMSB10 ACTB RTN1 PKM CALM3 PPP3CA MT-CYB PSAP SPARCL1 THY1 CKB PREPL GRIN2A GPM6A RP11-111M22.2 STMN2 NEFL RAB3B DYNLL1 SLC17A7 TSPYL1 YWHAZ EIF4A2 HSP90AA1 PEBP1 CLSTN1 DCLK1 TMEM59L ENO2 MT-ND3 HINT1 NAPB ARL6IP1 MT-ND1 FGF12 CREG2 USMG5 RAB3A TUBB2A ATP6V1B2 COX4I1 FAM127A YWHAB HSP90AB1 ATP5E NRCAM ATP5B PLCB1 VSNL1 CADM2 STMN1 MTRNR2L12 MDH1 CFL1 AP2M1 TAGLN3 ATP1A3 GABRA1 EIF1 SLC39A10 ISCU NEFM CABP1 UQCRB CHL1 SNRPN NCALD PDP1 NDRG4 PGAM1 TPI1 SNAP91 MT-ATP6 UCHL1 BEX4 CPE BASP1 PRKACB ATP2B2 SEPW1 COX6A1 OAZ1 OXR1 TSPAN7 STXBP1 APLP1 KLC1 COX7C ATP1A1 PI4KA PRKAR1B ATP6V1F SARAF LMO3 NDFIP1 LMO4 NDUFA4 SNX3 RPL41 COX7A2 NPTN NEGR1 C14ORF2 PFN2 AK5 RPL13A NELL2 NUAK1 PRKAR1A PRNP PPIA SNCG NDUFS5 PAFAH1B2 PIK3R1 GNB1 UBA52 SERF2 EIF1AX SLC22A17 NPTX1 RPL32 CSDE1 BEX1 PJA2 SCOC CDK5R1 CA11 RPL36A SCN3B GRIN1 GDI1 VAMP2 RPL8 TMA7 GHITM SH3GL2 FTL SERINC1 UQCRH MORF4L2 ARF3 MLLT11 TOLLIP ACTG1 MORF4L1 CA10 C19ORF70 CCDC85B PAK1 RGS4 PRUNE2 RPL21 RPL17-C18ORF32 PGK1 RPS28 GRINA MMD PPP2R2B ATP6V1A RPL26 TMX4 CLTC CADM3 C11ORF31 NPTXR RPL31 PCDHA4 TSC22D1 HMP19 DPYSL2 MTPN SEZ6L DNAJC5 NAT8L CEND1 SYN1 PTMA ALDOA PLD3 LDHB QDPR NAPA RHBDD2 ENSA RHEB NDUFA1 DKK3 CAMKK2 ITM2B CAP2 PSD3 SLC24A2 SYT13 PRKCB NDUFA13 ITFG1 MTRNR2L1 MRFAP1 RPL12 OAT EID1 NDUFC2 ATP6AP2 APLP2 TCEB2 RAP2A SULT4A1 TMEM130 HK1 PIN1 RP11-20I23.1 ATP6V0C CRYM KIF5A SNCB BAI2 ATP5A1 CAMK4 MAP1A KIF1A FXYD6 PINK1 CAMK2G PHYHIP PCMT1 RABAC1 MTCH1 CDH8 RPL15 NAA38 SERPINI1 PPP3CB RORB RPL18A CNTN1 RPL13 NGRN ARL6IP5 NCDN COL5A2 GABARAPL2 ATP6V0E2 UBE2V2 CAMK2D ATP2A2 SRP9 FXYD7 GDA GNAQ DYNLT3 DCTN3 SNCA GLRA3 RPS27A RAB40B WBSCR17 ADD2 BNIP3 GLO1 SYT5 FAIM2 DNAJC6 WASF1 GNG3 HS6ST3 C1ORF115 NGEF REEP5 CDC42SE2 PNMA2 SOD1 VDAC1 RAB3C IPCEF1 MYEOV2 CAPZA2 BIRC5 SKP1 TPD52 NCEH1 SV2B TOMM20 RPS15 SCN1A UBB MFN2 WDR47 MT3 ZFAND5 NKIRAS1 ATP5G3 MAP2K2 RPS6 MAP2K4 ELAVL4 UBE2QL1 PPP1CB PRDX1 PPP2CB NDUFB1 SEZ6L2 PRSS3 BRK1 ZBTB18 ATP6V1C1 EPDR1 RAPGEF5 MAPRE2 IGSF21 ELAVL2 RPL3 SRP14 COX7B NAP1L5 TBCB SYT11 MAPK8IP2 ATP5J2 GPX4 PSMA7 PPP3R1 YJEFN3 TCEAL7 CDH13 MAGED1 PGRMC1 NCAM2 DNAJA1 SYT4 CAB39 SYN2 DYNLRB1 MAPK1 PPA1 SERPINE2 PEA15 NRN1 ANAPC11 TMEM14A C9ORF16 LPPR4 SELM SNX10 MAP1LC3B TMEM258 TUBA4A MTRNR2L8 UQCR10 KIF21A ATP5H PRDX2 RAB11A CDK14 FAM219A LYNX1 FBXO2 DIRAS2 KRAS ATP9A ITM2C SPCS2 ZNF365 BSN HSPA8 TXN ATP5O ADAM23 SERINC3 KCNK1 AES RSL24D1 COX7A2L TBCA EPB41L3 RPL11 HMGCS1 SMS CD59 RPL37A TRMT112 RAB6B CPLX2 RCAN2 HIGD1A NDUFA2 PTK2B C1ORF52 NR1I3 GABARAPL1 EFR3A MRPL33 DPP6 NUDT21 MAL2 HMGCR CRIP2 FKBP4 FAM134A RAB6A HOPX SPTBN1 KCNAB2 ACTR1A GABARAP UROD CHCHD2 TUBA1A FAM84A CDH22 SNN MYO1B TUBB4A HPCA PPP2R4 ATP6V1E1 KIF3C TEX2 MYL6 UBE2E3 OCIAD1 CYCS OPA1 VPS35 AP2S1 PSMB5 GMFB SLC35B1 PFDN4 MPC2 TMEM35 SPRYD3 TSPYL5 AP3S1 DYNC1I1 NAP1L2 NTNG1 BANF1 BSG SELT CX3CL1 CTNNB1 FAM96B GPCPD1 TRAPPC1 MLF2 RPL7 UBL5 TPGS2 MAST3 LDOC1L CHGB GDE1 DCTN1 SLC38A11 TERF2IP SYNJ1 SAP18 NARS GOT2 TUBB4B PTPRN SUMO2 PHYHIPL HSPE1 FKBP8 RAB1A OXCT1 HOMER1 STX1A LIN7B PEX5L LIMK1 PPDPF CD63 DSTN ATP5I INA UQCRC1 NFE2L1 TCEB1 CTNNA2 NDUFB5 SIRPA CERS6 SCAMP5 FIS1 DYNLL2 NSF CDK17 SLC12A5 POLR3H BEX2 D4S234E H2AFZ RNF11 CTXN1 GUK1 EGFL7 LRRC59 TRHDE ID2 RAD23B ATP6V0D1 APBB1 ARHGAP35 PAM ATP5C1 PNMAL2 OLA1 NDUFA11 GAD1 VDAC3 NDUFB11 FKBP1A RFK CARTPT RP11-195F19.5 MBOAT7 MSMO1 STRAP COX6B1 KLHDC3 ARHGDIA ATXN10 INPP5F NDFIP2 DGUOK ARF1 NHP2 ETFB MTATP6P1 PRDX5 ELMO1 PPM1A CORO2B NDUFA5 WBP2 ATP5G1 SLC9A6 CYB5R3 GTF2H2C_2 DNAJC21 BSCL2 TUBB3 HAPLN4 PCDHGA5 TCEAL2 C4ORF3 EHD3 NNAT COX6C SEC61G LMBRD2 BCAP31 RANBP1 RLIM CD99L2 SMIM13 PRKCE CTC-575D19.1 WARS PELI3 HEY1 CHP1 OST4 TMEM230 SLC38A1 PDE1C ESYT1 MAP7D2 SDCBP PCBP1 TLN2 BAD TKT INSIG1 SPOCK1 GPX1 BCAS2 THOC7 HSPA4 FAM19A2 KIAA1045 CLTA WSB2 PLEKHH2 KLC2 CTNND2 MRPS7 PTGDS RPS4X NUDT4 SLC7A1 C19ORF53 TMEM155 JUND PITHD1 NBL1 STUB1 DDN NDUFAB1 GSTO1 UHMK1 RPS10 ARL8B SYNPO SUMO3 RAMP1 PFN1 ALDOC ARHGDIG RASL11B EXTL2 TMEM191A RHOB SRD5A1 PPP2R2C ASAP2 NDRG3 NDUFB2 LDOC1 PET100 LAMTOR5 ARPC5L CYFIP2 CNR1 CLIP3 SCN2B MT-ND5 B3GNT1 WBP11 ARF5 PGM2L1 UQCR11 YWHAQ RP11-175B9.2 PCSK1 HAMP FBXL16 BTNL9 DNAJB6 RPL38 DIRAS1 PSMB7 KCNV1 RAB4A MYL12B ZCCHC17 TCEA2 RBX1 PPP2R1A TSPYL4 ATP5J FAT3 RHOA RNF181 NHP2L1 FASN SLITRK1 OLFM2 CHMP4B CDK5R2 CAPZB BAG4 POLR2K FAM174A REEP2 RNF208 ROBO2 CLPTM1 COL24A1 CAV1 TPRG1L DNAJB9 PRDX3 NEUROD2 MIEN1 KIFAP3 ATRN TOMM70A RAB7A ANAPC13 CTSD DRAP1 GOT1 SLCO4A1 EIF4G2 SYNGR1 PITPNA TMEM150C EPHB6 LINGO1 MRAS SSTR1 CDK5 RAB2A LZTS1 SLC25A22 RPS2 AZIN1 FBXW11 MIF OPCML NDUFB7 SYNGR3 GPR171 RAB11FIP5 MRPL12 CMPK1 PFDN1 MRPL47 CBX6 PLA2G2C GPR6 LINC01296 PACSIN1 ATP6V1G1 UROS TPT1 MAP4 FAM19A1 TCEAL5 RAP1GDS1 SSTR2 SIGIRR PDE3A REPS2 EIF1B PTPN20A CPNE4 ETS2 ASPDH ATP6V0B SNAPC5 CPNE8 BAALC PSMD12 RPL6 DMTN SMIM12 MRPL51 NMNAT2 EGR3 SKAP2 SUMO1 ATP5F1 COL6A1 PFKP SLC25A4 CHMP5 PEF1 PNKD MYOM2 TXNDC17 RAP1GAP2 SH3BGRL3 MZT2B EPS15 S100A6 LMBR1 SPOCK2 ENO1 TESPA1 CADPS2 ARFGAP2 AC244489.1 ATP6V1G2 MTRNR2L6 C18ORF32 RELN OR6D1P TUBD1 OPRM1 MTND2P28 SCN1B GPX3 GPR150 CALB1 PIP5K1B PPIF MGST3 NDUFAF2 KCNMB4 RTN4R TRIM47 IDH3A RRM2B DCDC1 PNMA1 MPP1 RAN KITLG FIBP SP9 RAB5C KCNA1 KCNC3 MAGEH1 MTX3 TGOLN2 DCC SRM ACAT2 MBP MANBAL CA9 PCDH8 UQCRFS1 FNDC4 COL11A1 VDAC2 HNRNPH2 ACLY PRKCG RPS5 SGCD FUNDC1 HBQ1 HSPBP1 FJX1 AC011043.1 SPRTN DEPDC1B MYH7 CKS2 TMEM179B LAGE3 DUSP2 COX8A TCEAL3 NDN CDC37 CNTROB RPL35 TMTC1 COBLL1 GLIPR1 PARP14 WASL ASNA1 NAP1L3 ZNF880 COPS7A CYC1 ACP1 ACOT7 PCP4 CMAS EPHA6 KCNA2 SNX17 CYP1B1 TOMM7 TMEM147 LANCL1 PPP1R7 NRAS CDKN2D PAQR9 FAM162B TTN DHCR24 TMEM200C ONECUT2 RAB27B DMKN CCDC110 ERH GFRA2 KLHL12 RPS19BP1 ARL4C NDUFB10 RASGRF2 NIPA1 FOXP2 NEUROD6 ATPAF1 RP11-264F23.1 ANXA7 TM2D3 EDNRB SYT3 WNT5A MAPRE3 SAMM50 ZMAT2 TEX15 TPPP VSTM2L HTR1F MZT1 PSMC5 LGALS1 AGA NOTCH3 SLC9A9 MPPED1 ADSS FSCN1 NCBP2-AS2 ARL4D RRAGA MCHR2 BEX5 C7ORF50 HN1 CPLX1 DLD DDAH1 POMP ABHD14A SUB1 PCSK1N VSTM2A FGF10 TNFAIP8L3 PVRL1 NDUFB4 TOX C1QBP DNM3 SQLE CLSTN2 LINC00116 SNRPE HTR2A RPL17P50 SCD5 SLC30A3 ERVMER34-1 MED10 RGS12 C2ORF47 SCG2 EIF5A2 RPL10A ZNF385A SLC7A8 PTPRS PSMD8 ATOX1 YAE1D1 CIAPIN1 ABHD8 NOV UBA1 NDUFA12 COL12A1 MYRIP AP1S1 C1D CISD1 FAM149A CTBP1 TDRD5 UBQLN2 PRDM8 HPRT1 ACTR10 SYNPR COX5A MAOB CLIC5 GPR98 GADD45GIP1 ATP2B4 UQCRQ PEG10 GDF10 TMEM144 C2ORF80 EDIL3 GUCY1B3 DAB2 GRM3 TLE4 SLC6A17 CETN2 TBR1 PTPRN2 NELL1 MEGF11 DLC1 SLC25A6 C9ORF24 CHRDL1 ATP6AP1 FABP3 UBC RASGRF1 THSD7A C6ORF1 TMEM11 BHLHE40 ARPC4 MRPS21 CRTAC1 PDCD5 C19ORF43 MT-ND4L C3ORF80 VEGFA ABCA8 COX5B CACNG3 SGK223 PSMC1 PTGER3 NREP NEK7 PLA2G4D IFT52 GPR158 MET VAPB TMEM141 CACNA2D2 AP2B1 KCTD9P2 GSTT1 CLIP2 MAP1LC3A RPS12 NDUFC1 HCN1 MRPL55 SH3RF1 BTBD10 ADM SPOCK3 RNASEK-C17ORF49 CAPNS1 ATP5G2 BCKDK SH3BGRL2 ISG15 ENOPH1 SEMA3A PPP2CA IFI6 LRP1B TMEM70 IGFBP6 CNRIP1 USP5 RP11-133L19.3 RP11-632C17__A.1 C19ORF10 C14ORF132 FAM131B AURKAIP1 ITPR2 GPATCH4 C20ORF24 GRB14 CDH7 NGB SLC2A1 MIR6723 PGD APOD BHLHE22 PRELID1 EGR1 PALD1 PRRX1 CCDC124 NDRG2 COPE STX1B FIGN SLC1A2 POLR2M BLOC1S1 HBA2 JAKMIP1 HBA1 KRT17P6\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "cortical layer 2-3 excitatory neuron B" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MT-CO1 PPP3CA MT-ND2 MT-ND3 MT-CO2 MT-ND4 CALM1 RPS26 SNAP25 CHN1 RPL37A TSC22D1 MT-CO3 NPTX1 MT-ND1 UQCRB AP2M1 VAMP2 CALM3 EIF4A2 LAMTOR5 RPL31 SERPINI1 NR1I3 ZFAND5 ARL1 UCHL1 MAP1B GRIN2A PREPL CADM2 ACTB TAGLN3 SERINC1 PLEKHG3 RPL38 RPL32 ARPP19 TMSB10 RHBDD2 NELL2 NECAB1 RPL35 CYFIP2 APLP1 CHCHD2 FLOT2 RTN1 UBB TPT1 RPS4X RPL8 MED31 KITLG PRNP NCDN TMA7 JUND BSG PNKD RLIM ATP5G2 RTN3 CYP26B1 GUK1 PSMC3 PPP2R1A RPL23A RPL39 CHL1 COX7A1 ITFG1 PGM2L1 SEZ6L CPE SYT1 SERINC3 MAP7D1 SCG2 BEX2 HAPLN4 DKK3 PAK1 CDK5R1 ACP1 ENSA TCEA2 GAP43 NAP1L3 CAP2 MT-ATP6 PPP1CB ACTR10 IPCEF1 PHYHIP FAIM2 ENC1 LMO3 ATP6AP2 UBE2F RPS12 PCBP1 CNR1 LINGO1 CLU CACNB1 YWHAH STX1A TSPAN7 TPD52 NDUFC1 PPA1 SCN1A ATP2A2 PIK3R1 MT-CYB SLC17A7 NDUFA12 UQCRH SLC38A11 RPS27A DNAJB6 SRP14 MAPRE3 OCIAD1 MTND2P28 NRN1 GHITM RPL21 SERF2 TRMT112 RP11-219A15.1 CFH HNRNPA1P40 SYTL2 ZNF385D RAB3B MBOAT7 RPL13A AC244489.1\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "cortical layer 2-3 excitatory neuron B" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MT-CO3 MT-ND4 SYT1 MT-CO1 CHN1 MT-CO2 RTN4 SNAP25 GDI1 MT-CYB MT-ND3 PRKCB GABRA1 MAP1B YWHAG NRGN ENC1 PJA2 CALM2 RAB3B SLC12A5 ATP1B1 ACTB MTRNR2L1 MT-ATP6 CABP1 MT-ND2 SYT11 ENO2 APP PLCB1 STMN2 GRIN1 SLC17A7 THY1 DPYSL2 ATP2B2 PPIA CDK5R1 ATP6V0B TSPYL1 PRNP RTN1 CKB MTRNR2L12 RTN3 SLC39A10 PPP2R1A MAPRE2 PKM BSN MTPN SERINC1 DYNLL1 MTATP6P1 ARPP19 SV2B PPP3CA PGAM1 TUBA1B MTRNR2L6 RGS4 OCIAD1 IDH3A RPL41 C18ORF61 COX7C SCAMP5 PPP2CB IDS NDUFA13 STXBP1 NGFRAP1 JUND PDP1 ATXN10 PPP2R2C COPS8 CMAS RPL15 FGF12 NAT8L NDUFB2 CCK PNMA2 TPGS2 KCNA1 DKK3 RAB2A LMO4 MAPK1 GDA APLP1 NCDN WBSCR17 DNAJB9 SLC24A2 FBXL15 LGI3 KLC2 CDH13 ARL8B CNTN1 BSG WDR47 ATP1A1 SERINC3 FAM127A CALM1 GPM6A SYN1 RPS27A SYT2 OLFM1 GAP43 NUAK1 ALDOC NARS MT-ND5 MT-ND1 ATP9A PHYHIP VSTM2L WASF1 CALM3 CADM3 PSMD12 CCDC85B MT-ND4L ELAVL2 MYEOV2 CHL1 UQCR11 PSD3 MZT1 UQCRC1 NDRG3 BIRC5 PTK2B SIRPA GUCY1B3 THYN1 RAB3A RPL31 UQCRB MTRNR2L8 PRKACB PCDHA4 PCDHA9 RAB11A TSC22D4 SEZ6 UBE2V2 ETFB MAPRE3 CDC42SE2 CLPTM1 OLA1 TPT1 EID1 TBR1 TMSB4X OPA1 OLFM2 WBP11 CADM2 PARM1 MT3 VGF COX7A2L RPL8 RPL26 DGUOK ATP6V1E1 COA4 WNT5A MAP1A RAB1A DNAJA1 BAG4 CLU MORF4L1 YAF2 ATP1A3 NAPA LINC00087 ETS2 NDUFB5 ZFAND5 ALCAM CLTB CD63 FTH1 RAP2A CCDC61 RTN4R HOMER1 RAB6A ARHGDIG PAM PITHD1 DCLK1 KCNK1 C9ORF24 STMN1 COL24A1 CACNG3 RASGRP1 JUN TESPA1 TUBB4A PEBP1 MAP1LC3B BOC ASAP1 GFRA2 MDH1 TMX4 GMFB SPOCK1 NEFL SPOCK3 SLC30A3 VAMP2 INPP5F C12ORF49 PPM1A TCEAL7 SYT5 PSMC1 CFH ACTG1 GABARAPL1 FAM19A1 JAKMIP1 DDAH1 EGR1 MRPL51 PREPL PDCD5 EPS15 TBCA RASGRF2 SNCA RASGRF1 ATP6V0D1 KCNA2 RPS5 DUSP6 ONECUT2 BNIP3 VSNL1 COPRS FKBP1A GRIN2A LANCL1 NEFH YWHAQ CLSTN1 IGFBP6 SLC22A17 NAP1L3 KLHDC3 ITFG1 ATP6V1B2 RPL32 NAA38 TCEAL2 HAPLN4 FKBP8 TMEM59L SCN2B YJEFN3 SLC25A4 PPP2CA NUDT21 APLP2 EIF4A2 HCN1 DNAJC6 NDUFC1 DNAJC5 MARCKS COX6C SNRPN SCN3B BEX1 CBLN4 NEGR1 SLC9A6 SPRN GABRA5 CISD1 TEX2 SYNGR1 ATP6V0E2 RPL3 AZIN1 REEP2 PCSK1 DIRAS2 VIPR2 NPTN SARAF DYNLRB1 RPL39 ZNF365 OXR1 CEND1 PFN1 CAPZA2 MMD PCBP1 SELT TMSB10 CAB39 YWHAH LDB2 ATP2A2 FTL TMEM65 DHCR24 IMMP1L FAIM2 AKAP12 CLSTN2 ATRN HTR2A KLC1 EIF4G2 AK5 FAM131B TOMM20 INA TKT RPS15 RHOB TPRG1L DYNLL2 NCOA4 NDRG4 DNAJB6 RPS6 SNCB RHEB CNTNAP5 PDE1A MED31 SCN1A PNMAL2 CAP2 NDFIP2 NECAB1 CD99L2 RHBDD2 ARL6IP1 FAM3C NPAS3 SERF2 TM2D3 USMG5 ELMO1 NPTX1 CBX6 CPE PEX5L RHOA SCG2 CAPNS1 DPP6 PFN2 PCDH17 UBQLN2 NDUFA5 KIFAP3 KIF1A GPX4 COX5B WSB2 SERPINE2 SUB1 PCMT1 CPLX2 PTPRS NMNAT2 MAGED2 HSP90AB1 CACNB1 POLR2K SPARCL1 ATP5I NSF RP11-664H7.2 LGALS1 C2ORF80 EFCC1 ANXA7 ATP6V1G2 C18ORF32 RPL17-C18ORF32 NGRN RP11-20I23.1 RP11-219A15.1 TUBB3 ATP6V0C TUBB PLEKHD1\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "cortical layer 2-3 excitatory neuron B" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MT-CO1 MT-ND4 MT-ATP6 MT-CO3 MT-CO2 MT-ND2 MTRNR2L12 MT-ND1 ACTB MT-ND4L WASL PRNP MT-CYB MT-ND3 SNAP25 CALM2 SYTL2 RTN4 TERF2IP VAMP2 SYT1 RAP1GDS1 PEBP1 SNCA SPTBN1 MTRNR2L1 PREPL OLFM1 HNRNPA1P40 NR1I3 COPRS DPP6 SKP1 HOMER1 ZMAT2 RORB CCDC178 RAP2A TMA7 PCDHA10 STXBP1 SERPINE2 PNMAL1 CTNND2 PSAP TPD52 PCDHGA6 SERPINI1 WSB2 ARF3 SERINC1 APLP1 ELMO1 CALM1 ATP5F1 PRKCB MTPN ATP6V1F NDRG4 RAB7A MORF4L1 PPP3CA ENO2 NEFL MTRNR2L8 SUB1 PCBP1 ENOPH1 PPP2CA PGRMC1 ERH SERINC3 PACSIN1 STMN1 S100A6 RFK CCK CX3CL1 SEZ6L RPS6 CPNE8 MAP4 ATP6V1B2 MTRNR2L6 CMAHP OPN3 RPS28 HSP90AA1 TSC22D1 PTMA CALCRL PTK2B ATP5A1 YWHAQ HSP90AB1 TSPAN7 ATP2B2 TOMM20 GTF3A NRAS CKB GRIN2A QDPR PTPRN2 PPP3R1 ATP1A1 THY1 ENC1 RAB2A YWHAH DKK3 ATP6V0D1 OCIAD1 PRKACB DCLK1 CABP1 NFIA RHOA FXYD6 CRYAB RPS15 PSMB3 B2M BIRC5\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "cortical layer 2-3 excitatory neuron B" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: RAB3B SNAP25 CALM2 NPTXR MT-CO3 GRIN1 MAPK1 GPM6A OLFM1 RPL31 MT-CO1 ENC1 RPL36A RPL41 COX6C CADM2 RPL35 KLC1 PREPL MT-CO2 ATP6V0B NRGN TMA7 RP11-111M22.2 EPHB6 DCTN1 PKM CHN1 MAPRE3 RTN4 RPS6 SLIT1 MT-ND2 FAIM2 APLP1 RPS27A CALM1 ACTB HSP90AA1 SLC39A10 RPL37A GNG2 CLTC GRIN2A STXBP1 NRCAM WASF1 RPL12 AK5 ESCO2 ZNF385D PLEKHD1 RAB6B PRKCG MAP1A RPL18A CKB BASP1 BSN FAM19A1 ITFG1 SEZ6L2 HOMER1 SLC12A5 RPL11 GLRA3 CTU2 NDUFA4 TMEM59L NRSN2 MTRNR2L1 LPPR4 PSAP PIK3R1 NDUFS5 ITM2B FAM134A TSPAN7 SYT1 ATP6AP2 FTH1 UCHL1 MBP TUBB4A NDFIP1 GPX3 DPYSL2 NDUFS6 PPP3CB RGS12 PRKACB PNMA2 EIF1AX GDI1 RTN3 DMKN PACSIN1 MT3 SEPW1 NECAB1 ATP6V1B2 POMP C1ORF115 LIMK1 MT-ND5 GDA APLP2 SLC30A3 RNF181 MMD PFN2 NDUFB1 VSNL1 PPIA RPL38 ALCAM BAI2 TUBA1B KCNK1 KIFAP3 CAMKK2 MYOM2 MT-CYB YWHAG KIF21A RPL39 ENO2 MAP1B GPR26 SNCA PRKAR1B BIRC5 RP11-219A15.1 IDS NPTX1 SYT11 SLC38A1 HOPX ARL6IP5 RPS10 SEMA3C PHYHIPL BRK1 GABARAP C16ORF93 EID1 FBXL16 PPM1A COX6A1 PGAM1 NAT8L MT-ND4 FXYD6 PPP2CB WSB2 PODXL S100A6 DYNLL1 OPA1 HDDC2 FAM127A GNAQ CRKL CYP1B1 GDE1 BAD MPP1 MSMO1 RPS15 SYNGR3 GSG1L ATP6V1A CMAS SKP1 PSENEN GPR158 SAP18 SYNJ1 TUBA1A PPP3R1 NOS2 STMN1 MRFAP1 ONECUT2 MT-ND3 LRFN3 SERPINE2 ATP2A2 PHYHIP SCN3B RPL32 SPOCK2 CTC-575D19.1 CADM3 SULT4A1 SYN2 SLC24A2 RTN1 MORF4L1 ARPP19 FAM174A OAZ1 RNF11 RP11-20I23.1 APP FAM163B OXR1 USMG5 SPON2 SH2D6 TCEAL2 GAPDH MLLT11 UBB MTRNR2L6 CABP1 ATP5J2 WDR47 TESPA1 KIF3C RHBDD2 PGM2L1 PCDH8 MAOB RPS28 PSMC5 ATP6AP1 BEX1 SNX17 SLC17A7 HSPA4 RELN COX7B UQCRB MTRNR2L12 UQCRH HPRT1 PINK1 AP2M1 TOMM7 SLCO2A1 MAP7D1 CLSTN1 RGS4 PSD3 C7ORF50 RPS2 FAM96B YWHAZ PTK2B CA10 GABARAPL2 ARPC4 ARHGAP35 GRINA SLC9A1 ATP1A2 CAB39 GABRA1 LDB2 COPS7A CAPZA2 RPS3A CRIP2 NIPA1 PTMA HSPA8 PTPRS ABHD8 OLA1 CPNE4 MPC2 PAFAH1B2 TMSB10 TPD52 EPHA6 CREG2 RAB2A NAA38 DNAJB6 KIF5A SPCS2 TMOD2 NDUFA12 PCMT1 MAP4 STMN2 RPL6 UROS ATP6V0E2 TOMM70A STMN4 RPS12 CNRIP1 THSD7A MRPS21 NBL1 TMSB4X RABAC1 MAP2K1 SARAF KCNAB2 OXCT1 H2AFZ PCBP1 FTL MBOAT7 MT-ND1 RP11-97O12.3 CYCS MT-ND4L SH3GL2 THBS4 CHP1 RASGEF1B ATP6V0D1 ATP5E TUBB2A SERINC1 C19ORF10 PI4KA BCAP31 CDK5R2 EPB41L3 SRP9 RAPGEF5 ATP5B KCNA2 CALM3 TERF2IP NELL2 SSTR1 MARCKS MAGED1 ACTG1 WASL ASAP1 ARF5 JAKMIP1 ENPP2 MT-ATP6 NGFRAP1 DPP6 ZMAT2 JUND CX3CL1 DKK3 EIF4G2 TMEM155 CCK PEBP1 INA TCEB1 PPP2CA EDIL3 NCALD RPL13A MRPL55 MTCH1 CPE PEG10 PPP2R1A PTGES3 UQCRFS1 COA4 GNB1 FAT3 SNX3 MAL2 ATP5O ATP6V0C RAN FBXL15 PRELID1 AES D4S234E ATP2B2 BANF1 MTRNR2L8 MRPL11 CLU TOLLIP RAB1A COX5A PRKAR1A PRDX2 HMGCS1 LMO3 RP11-195F19.5 BAALC MLF2 LAGE3 ZBTB18 NDUFA1 TENM3 ATP1B1 TOMM20 CBLN4 SMIM13 PEA15 ARF1 RPH3A JUNB HN1 PPDPF SLC9A6 HMGCR TSPYL1 TMEM151A UHMK1 STX1A CHCHD2 SCN2B ALDOA NSF SNRPN NUDT4 RNASEK-C17ORF49 SERF2 RPL26 RPL21 PCDHGA5 PCDHGA10 PCDHGA6 ARFGAP2 SYTL2 HNRNPA1P40\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "cortical layer 2-3 excitatory neuron B" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: GPM6A SNAP25 PRKACB MT-CO1 RTN4 CHN1 PRKCB TSPAN7 ARPP19 NRGN RTN1 MAP1B PIK3R1 CALM1 ENC1 PPP3CA SYT1 ACTG1 MAPK1 TUBA1B NFE2L1 TF YWHAG STXBP1 RPL38 PPP3CB CREG2 CYFIP2 NREP REEP5 SULT4A1 OPCML RTN3 SYT13 RAB2A BEX1 EFR3A PSAP MORF4L1 ETV5 CNTN1 FAIM2 BSN DIRAS2 ATP1B1 PPP2CB SCG2 PKM DPYSL2 CKB ONECUT2 MT-ND4 NPTX1 RGS4 PRNP FTH1 MAST3 PRKCE LINGO1 BAG4 NEFL DKK3 TBC1D15 FABP3 SLC39A10 TMEM117 LAMP5 MT-CO2 SYNJ1 SQLE MTRNR2L1 FSCN1 UQCR10 RAP2A FAM84A ATP5A1 TMEM35 CLEC2L MFN2 MT-ND3 MT-CYB MT-CO3 VAPB GRIN2A INPP5F CAMK2G NDUFA5 BCAP31 GDI1 GNAQ PCDH19 GLDN MTCH1 NAP1L3 MAP4 SH3GL2 MT-ATP6 SPOCK1 KCNV1 SLC22A17 QKI ATP2B4 SPRN SNX3 MRFAP1 C1ORF56 VPS35 MAPK8IP2 TOMM20 VSNL1 RPS28 PTMA CALM2 ATP6V0D1 CAMKK2 STX1A GTF3A SLC35B1 CAP2 HS6ST3 BEX2 DHCR24 MT-ND2 RCAN2 TMEM14A CD63 CPNE8 KIF3C PCDH8 NAP1L2 WASF1 REEP2 MTX3 PSD3 SLC9A6 BAI2 PHYHIP CD99L2 EIF4A2 DNAJB6 KCNIP1 GPR26 MORF4L2 C6ORF1 NPAS3 SYN1 RAB6C-AS1 AES LMBRD2 TMSB4X PPA1 CAPNS1 NGEF KIF21A GPX4 ANO3 GPR88 APEH FOSB LGI3 MDH1 PPARGC1A SERF2 MT-ND1 STMN1 C1ORF115 PTPRN THY1 PREPL FXYD7 RHEB OR6D1P ASTL RAB37 CAMK4 VAMP2 PGAM1 NEUROD6 MTRNR2L12 GRIN1 PPP2R4 NDUFB4 GUK1 COPRS CCK KCNC2 WBSCR17 KIFAP3 APP RP11-111M22.2 MCHR2 YBEY NDUFA13 APLP1 CABP1 USMG5 BSG LZTS1 RAB6A NRN1 ARL6IP1 RP11-1396O13.2 ATP5E LMO4 SPARCL1 RPH3A FBXL15 GABRA1 ATP2B2 PGM2L1 ATP6V1B2 BIRC5 RAPGEF5 IL3RA TMEM130 AK5 NCAM2 SV2B ATP1A1 TSPYL1 CHL1 MTRNR2L6 RPL41 IDS RPL17-C18ORF32 RPL17 ATP6V1G2 HNRNPA1P40 CFH RPL7 GTF2H2C_2 AC244489.1 PTCHD4 PCDHGA5 PCDHGA6 PCDHGA10\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "cortical layer 2-3 excitatory neuron B" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MT-CO1 CALM1 SNAP25 NRGN MT-CO3 MT-CO2 SYT1 NPTN MT-ND2 ATP2B2 CHN1 MT-ND4 ENC1 RTN3 RTN4 CALM3 ARPP19 MT-ATP6 CALM2 PPP2CB STXBP1 TOMM20 TSPYL1 TUBA1B CCK ATP1B1 HSP90AB1 PPP3CA MTRNR2L12 SERINC3 MT-ND3 MT-CYB MT-ND1 PRNP MAP1B ARL6IP1 TSPAN7 LPPR4 MRPL12 FAT3 RP11-111M22.2 ACTB LMO4 KIF3C GPM6A PI4KA CDK5R1 VAMP2 OLFM1 APP SLC9A6 PREPL NECAB1 RPL41 ATP1A1 PDP1 WBP2 TSC22D1 RGS12 CEND1 PKM CADM3 PPP2R4 SERPINE2 CNTN1 PPP1CB ATP2A2 CKB SCN3B CLSTN1 ITPR2 NPTX1 ATP2B4 YWHAZ PPP2R2C AZIN1 SLC25A6 FAIM2 ATP5F1 MAP1A RGS4 PRKAR1B RAPGEF5 TERF2IP BCAP31 SLC12A5 WASF1 PJA2 LMBRD2 HCN1 SYNPO HS6ST3 SARAF FAM19A1 CRIP2 KIFAP3 PIK3R1 VSNL1 LAP3 STMN1 PPP3CB NNAT SULT4A1 PRKCB TMEM160 GOT1 NDFIP1 NARS PNMAL1 CYFIP2 BSG MAPK1 HSP90AA1 NDUFV1 TMX4 PEBP1 C1ORF115 SLC38A11 IDS MTRNR2L8 LAMTOR5 CERS6 TESPA1 DYNC1I1 BAI2 CREG2 GHITM MAP2K4 CTU2 ATP6V0E2 CXXC4 OXR1 ANO3 MTND2P28 CDC37 SEPW1 TOLLIP SNX10 TRMT112 NUAK1 NFE2L1 SLC39A10 CAMKK2 RTN1 DPYSL2 FAM131B ATP6V1C1 LMO3 PPP2R1A TMEM59L LDB2 DUSP1 ATP6AP2 MLLT11 DCLK1 TPGS2 HOMER1 VGF PGK1 PRKAR1A SYT17 MAST3 FKBP1A MTPN RRS1 LRRIQ1 VSTM2L APLP1 DNM3 TSPYL4 NEUROD1 CHST8 COL5A3 ACTG1 GRINA BEX2 RAP2A CPLX1 UQCRFS1 YWHAH UBC PTK2B EGR1 SMIM13 TENM3 EPB41L3 CHL1 PITHD1 BSN C1QBP IDH3A ZFAND5 RPS28 ATP6V1F TCEAL5 CX3CL1 D4S234E FAM84A HMP19 DMTN SLC6A17 PSAP PNKD UCHL1 KLC1 AP2S1 FSCN1 KIF21A KCNK1 MYO1B KIF1A UBA1 CFL1 C1S ITM2C APOE SKP1 ARL6IP5 SCOC MTUS1 GRIN1 ELAVL4 WARS DDN POU3F1 ETFB JUND GABRG1 TAGLN3 GDI1 FXYD6 MAP7D1 MTRNR2L1 RAB3A MED31 SUMO2 SYT11 CTNND2 SDCBP NDUFC2 SSBP3 CABP1 COX5B FAM163B LZTS1 SLC8A2 CDKN2D CADM2 NEGR1 BNIP3 YJEFN3 RHBDD2 NRCAM YWHAB EIF4A2 CACNG3 VDAC1 LCP2 ZNF385A BEX5 ATP5J2 RAB7A NPTXR CA10 RPH3A CNR1 NAPB ACOT7 PNMA2 LANCL1 PCMT1 NDUFS6 CLSTN2 GUCY1B3 CCDC85B CHRDL1 SCD5 UHMK1 HMGCR HPCA RAB31 SERPINI1 MAGED1 PCSK1N TMEM130 AP2M1 APLP2 SLC7A1 ZNF365 MORF4L2 AP1S1 SLC30A3 RPL7 NAT8L MGST3 TPT1 GTF3A MPC2 ARF3 SCG2 TRIM37 SPARCL1 ENO2 NCEH1 ITFG1 SV2B ATP5E RAN POLR2M PIN1 RHEB THY1 NRN1 GYG1 PSD3 CSDE1 CA11 FXYD7 EIF1AX TMEM35 NDUFB5 RAB11A SPTBN1 PIP5K1B GNG2 TPI1 DGUOK DNAJA1 SUMO3 BHLHE40 VAMP1 SPRYD3 NDRG4 NAPA PRDX3 FILIP1L PIP4K2A NEFL PHPT1 PNMA1 TGOLN2 ROBO2 GNAQ HTR2A CPNE8 FAM3C TMEM132D ATP6AP1 HK1 STX1B HPRT1 SLC17A7 USP5 AURKAIP1 ARL8B GNG3 H2AFZ GSK3A SERINC1 GPR26 RPL17 MORF4L1 GABARAP RNASEK-C17ORF49 RPL17-C18ORF32 ARF5 ATP6V1G2 RP11-219A15.1 CFH TUBB AC244489.1 PCDHA9 PCDHAC1 PCDHA4 PCDHA10\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "cortical layer 2-3 excitatory neuron B" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: SYT1 MT-CO2 CALM1 TMSB4X SNAP25 MT-ND2 NRGN SPARCL1 RTN1 IDS BASP1 CALM2 STMN1 ATP1B1 TBC1D15 ZNF385D RAB3B SYTL2 MT-ND4 YWHAH RTN3 ACTG1 NGFRAP1 PSD3 ENC1 ATP5E TMSB10 MT-CO3 CHN1 SERF2 ATP5J2 RORB STMN2 PSAP VAMP2 CDK5R1 GRIN1 RTN4 ZBTB18 ATP6V1A SERPINI1 CABP1 PLCB1 RP11-111M22.2 SULT4A1 PKM NRCAM OXR1 HSP90AB1 PRKACB UQCRB EIF4A2 PPP3CA PREPL FTH1 DPP6 KIF21A CADM2 YWHAZ MYL6 PGM2L1 ENO2 CCK PPP2CB MT-CO1 TMA7 RPL35 GAP43 ATP1A1 PTPN20A APP SPOCK1 NDUFS5 SLC24A2 SUB1 EID1 SH3BGRL2 RPL37A GUK1 WASF1 DSTN PRNP GHITM SV2B PCMT1 RAP2A SCN1A GDI1 SYN1 MGST3 GPM6A CKB DCLK1 ACTB ATP2B2 GAPDH RPL17-C18ORF32 SMS TRHDE CREG2 CDK5R2 GTF2H2C_2 NR1I3 UCHL1 MAP1A MT-ND1 TPI1 EPHA6 SCD5 NELL2 MIEN1 GORASP2 CHL1 GABARAPL1 SERINC1 MPI FXYD7 CPE HSPB8 BEX1 KLC1 COX6A1 NAPB NHP2L1 MTCH1 NTNG1 RPS15 COX6C RAN ARPP19 FASN DNAJA1 EIF1 MBP PTPRZ1 SNRPN SLC17A7 THY1 RAB3C MT-ND3 PRKCB NFE2L1 PITHD1 VSNL1 PRKAR1A RPL13A UBB NCDN DNAJC5 PFDN4 SLC38A1 PEBP1 NREP MAL2 CAP2 YWHAB RAD23B MAP1B UBA52 GRIN2A PRUNE2 SMIM13 COX7C PPP2CA RAB3A KCNA2 DYNLL2 FKBP1A SNX10 RPL13 YWHAG COL5A2 TUBA1B PIK3R1 MT-CYB ARF3 SNAP91 RP11-195F19.5 NMNAT2 RNF181 RNF11 CYCS RPS4X GABRA1 UQCRH NEFM NRN1 PGK1 NUAK1 RAB1A RPS6 TPT1 PJA2 TSC22D1 HSP90AA1 NDFIP1 REEP5 NDUFB4 BCAT1 RANBP1 UQCRC2 SEPW1 LMO4 PSMA7 CERS6 DNAJC6 CLU TUBA1A DYNLRB1 TSPAN7 SSBP3 NDUFA13 MT-ATP6 TMX4 MORF4L1 IDI1 UQCR11 TMOD2 RPL36A TUBD1 OAZ1 PSMD8 ZCCHC17 COX8A MYEOV2 ATRN VDAC1 GOLIM4 RFK MRVI1 OTOA NECAB1 APLP2 HK1 SEPT4 MRFAP1 GTF3A LRRC59 GABRA6 LYNX1 RPL15 S100A6 CYB5R3 ABHD14A DLD OPCML RPL39 BEX5 NDUFB10 HCN1 AP2S1 PTPRN STMN3 RPS27A ATP5I DHCR24 FAT3 BSG WARS ENSA CNTN1 NTN4 RPS3A ZBTB20 FAIM2 MTRNR2L12 SPCS2 INA NKIRAS1 C19ORF53 TMEM14A NDUFA12 PBXIP1 NGEF MPP1 LMBRD2 COX4I1 PNMA1 GRINA RPL7 PFN2 BTNL9 NAA38 AZIN1 PHLDB2 FAM19A1 CLSTN1 MAPK1 PAK1 NARS MAP4 RCAN2 SPRTN RP11-90P5.1 GPX1 ALG10 ACOT7 CDK14 NDN CMAS DCC DIRAS2 RBX1 SUCLA2 PGAM1 NDUFA1 SLC7A8 TLE4 RASGRP1 RHEB CCDC68 TOX2 INPP5F NUDT21 DCTN1 USMG5 PPP2R2B SYT4 TCEAL5 MTATP6P1 NHP2 CYP1B1 GSTO1 BAALC NBL1 HOMER1 MLF2 ACOT4 ABCA8 DIRAS1 ADAM23 CLIP3 OR6D1P VSTM2L KCNC2 KCNAB2 C1S RPL32 MDH1 HSPE1 FTL SELM MAP7D2 SUMO2 GNG2 BTBD10 PFKP SAP18 BEX2 MORF4L2 RPL21 SPTBN1 DNAJB9 ATP9A ZBBX DYNLL1 IQSEC1 RP11-20I23.1 C19ORF10 STXBP1 BEX4 PPP3CB CALM3 LGI3 WASL MMP24-AS1 NDUFB8 CEND1 PSMD2 ISCU CDC37 UBA1 PRDX5 DPYSL2 C14ORF2 PCSK1N PEA15 ADCYAP1 OLFM1 RPL12 CRIP2 SNN MRPS21 UBE2F CD99L2 TSPYL4 SEMA5A GRAMD3 GOT1 PRDM8 HMP19 RPL23A SYT13 RASGRF2 MED10 KIF3C SNCA TBCB BRK1 PPP1R9B MAGEH1 PGD RRM2B FKBP4 PPP2R1A TBCA WSB2 TOMM20 RPL38 SYNPR SYT5 ITM2C NIPA1 UBE2N DYNLT3 RASGRF1 UHMK1 RAB6A RPL31 C1ORF52 CDH8 FAM84A NGRN MLLT11 HMGCR FUNDC1 CRYM RAB2A PNMA2 TPPP MIF TWIST1 MRPL15 ITM2B PHYHIP LCNL1 PLS3 FXYD6 COX5B TSPYL1 SUMO3 HTR2A RPL6 GMFB SYNJ1 SYN2 ARL6IP1 KCNC3 TMEM35 KIF5A IPCEF1 SLC25A22 D4S234E CLTC TOLLIP FBXO2 COPG1 CLTA PRDX1 WBP2 SUSD4 MTPN PGRMC1 ADAMTS9 ATPAF1 SPHKAP PPP1R7 CA11 FAM134A GNAQ PDE1C NEFL FAM127A TM2D3 NDUFA5 GPR56 GNG3 GLRA3 CRIM1 CLDND1 KIAA1045 GRPEL1 CDC42SE2 LAMA4 NCEH1 SLC38A11 KLHDC3 TMEM151A TCEAL2 COPS7A PEX5L C1ORF56 RAB40B PPP2R2C TMEM130 HSPA8 NAT8L APLP1 ARL8A REEP2 CADM3 NAP1L3 DMKN JUND ATP5G1 ATP6V0C COX7A2 ZFAND5 UBE2V2 PRKCE RIIAD1 RPL41 NPTXR SCAND1 DLC1 CIAPIN1 COPS8 PET100 KCNK1 DNAJB6 STX1A CCDC85B CRYAB LPPR4 RAB6B EIF1AX NAP1L2 GPCPD1 TPGS2 TLN2 UQCRQ ATP6V1F ASNA1 COL11A1 BANF1 NDUFC1 NDUFB7 KLC2 SH3GL2 RAB11A STRAP VAPB AC244489.1 GABARAP FAM3C ALDOA ARF5 HIGD1A APOLD1 NSF NUDT4 CNTNAP3 PSMB3 RNASEK-C17ORF49 PCDHGA6 PCDHGA5 PCDHGA10\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "cortical layer 2-3 excitatory neuron B" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: SNAP25 RTN4 MT-CO2 MT-CO1 CALM2 RTN3 ARPP19 SYT1 GPM6A RP11-111M22.2 CHN1 ZNF385D CCK PRKCB TMSB10 VSNL1 TBC1D15 MAP1B RPL31 CALM1 NRGN ENC1 MT-CO3 RPS15 DYNLL1 RTN1 C14ORF2 SLC39A10 CLU RAB3B YJEFN3 CREG2 PKM SCN1A HSP90AA1 PSAP RPL36A MT-ND4 TOMM7 RPL37A MT-ND1 RPL32 HOPX CKB TSPYL1 ARF3 TUBA1B PEBP1 TUBB4A RPL13A PPP3CA YWHAH LMO3 MT-ND2 EIF4A2 GRIN1 TSC22D1 TUBA1A KLC1 DYNC1I1 CALM3 PCDHGA5 ATP1A1 ARL6IP1 STMN1 OLFM1 DKK3 FAM84A PRNP NDUFA13 RPS4X SLC12A5 SYT11 CABP1 CADM2 YWHAZ PHYHIP DPP6 TUBB2A RPS27A NECAB1 ACTG1 AK5 PREPL RPL41 ACTB SEPW1 PRKACB NAPB TSPAN7 MT-ND3 ATP1B1 SLC30A3 ATP1A3 PPIA CFH RP11-219A15.1 HNRNPA1P40 SPARCL1 MAL2 MTCH1 ATP5G3 RPH3A CAP2 SLC17A7 ANO3 NDUFC1 HTR2A PRKAR1B RNASEK-C17ORF49 ATP5E CAMKK2 GABRA1 TMSB4X TXN KCNV1 NRCAM ATP5J2 SNCA ENO2 BSG PGM2L1 RPS12 FTH1 GUK1 SOD1 TMX4 NAT8L RPL15 YWHAB TBCA MAP2K4 MTRNR2L1 SUCLA2 PGRMC1 UQCRH PTMA SNCB PSD3 OPCML NDFIP1 PIK3R1 RPS6 SNX10 ATXN10 PFN2 PGAM1 APLP1 OXR1 VDAC3 STXBP1 TGOLN2 NGFRAP1 RPS10 UQCRB TMEM59L SCN3B CDK5 SLC1A2 SERINC1 CLSTN1 OAT DCLK1 PPP1CB ARF1 OST4 TPD52 UBC RP11-20I23.1 ATP6V0C IDS RPL6 RPL38 CHMP4B LDOC1L TMEM65 ACTR10 PPP2R4 GRIN2A ATP2A2 ARL6IP5 RAB40B RPL12 GAPDH PIN1 RSL24D1 COX4I1 SLC22A17 HSPA8 TMEM130 NPTXR SERPINI1 RAB2A DNM3 CERS6 NDFIP2 ATP5G1 SNX3 ATP5J C4ORF3 RPL11 RPL17-C18ORF32 NELL2 NUDT4 SERINC3 CPNE4 PPP2R2B ATP5I SNAP91 DCTN1 CLTC FKBP1A OCIAD1 SLC6A17 CADM3 RPS28 PARM1 MT-ND4L ELAVL4 FASN BEX5 LMO4 BEX2 SEZ6L NUDT21 NHP2L1 ATP9A OPN3 GDA GADD45GIP1 EPHB6 DNAJB6 VSTM2A TOMM20 BSN RGS4 MAPK8IP2 EID1 HS6ST3 PPP2R1A TAGLN3 CHMP5 KLHDC3 SH3GL2 TLN2 SLC8A2 COX5A COPE IPCEF1 HCN1 RPL39 DNAJC4 ONECUT2 PJA2 UBE2V2 MAGED1 NCDN SUMO2 NPTN MAPK1 RPL21 ATP2B2 ATP5B FAIM2 NDUFB1 SIRPA GAP43 PRKAR1A HSP90AB1 NGEF SPOCK1 MYL6 VDAC1 NDUFB4 MAP1LC3B RAB4A GDI1 NRN1 LYNX1 PLD3 SKP1 NEGR1 UHMK1 ZNF365 CACNG3 PLCB2 UCHL1 GMFB IQCK STUB1 NARS MT3 INHBA PLCB1 RNF208 UQCRC2 NDUFA4 CAMK4 RLIM VPS35 CAB39 CSDE1 BNIP3 CCDC154 HIGD1A CCT5 ESCO2 TUBD1 NR1I3 PGK1 FAM229A RASGRP1 CTNNB1 SH3BGRL3 TSPYL4 BASP1 KCNAB2 CLTA CMPK1 YAF2 ATP6AP1 SLC38A11 ETS2 ABHD14A RAB11A DDN POLR2L C19ORF53 SCN4B HOMER1 PNMA1 TBCB AP3S1 HMGCR NAP1L3 TESPA1 KIF5A ATP6V1G2 PFDN1 COX7B UBE2N TOLLIP RPL23A PPP3CB SNN H2AFZ ITFG1 TMEM35 PDE1C NMNAT2 RAP2A ACTR6 CDC37 DLD GSK3A COX5B ELAVL2 RFK PNMAL2 UBA1 TM2D3 PCDHA9 PRDX1 ATP6V1F NDUFV1 SYNJ1 DIRAS2 SYT4 IGFBP5 RELL1 NEFM LAGE3 PDLIM5 UBQLN2 GPR171 CPLX2 TMOD2 RHBDD2 PACSIN1 HMP19 PTPRN BANF1 EPB41L3 SYN2 MGST3 CRKL ITM2C EDF1 SLITRK1 C1QL2 ATP6AP2 MT1M JUND PNMAL1 UROS POLR2I CBX6 RPL18A CPE SRP14 TPPP SCOC UBE2D2 CMAHP GPR6 ZMAT2 ATP5G2 PSMD8 TCEB2 SLC35B1 SLC38A1 MRAS LDHB COX6C NFIA MTX3 DGUOK CYFIP2 RPL7 SMAP2 LDOC1 ALCAM C14ORF132 NRSN2 COX7C PIP5K1B CA11 RNF11 NUTF2 BEX1 GORASP2 NAP1L2 REPS2 GNAQ MLLT11 PET100 CAMK2G PDZRN4 TMEM141 PRDM8 RHEB ATP6V0E2 SPCS2 PSMC5 NDRG2 RAB3A ZNF804A TTN SLC9A6 TMEM258 MAGEL2 RAD23B LRRIQ1 AP2B1 NCAM2 SULT4A1 MPC2 RAB6A NTNG1 RPL35 SLC25A4 NAPA PPDPF PCDH19 HEY1 LCNL1 NDUFB10 VAPB NEUROD1 ARPC4 PDZK1 TMEM230 SYNPO KIFAP3 COX8A APLP2 PCBP1 EGR3 THY1 SYT5 CADPS2 SCD STMN3 NDUFA1 RAB6B FBXL16 C19ORF10 SRP9 TMEM150C BAI2 WASF1 NUAK1 EFR3A EIF4G2 C19ORF43 KLC2 WFS1 NPTX2 DPYSL2 GNG3 UBE2E3 IMMP1L RTN4R SNRPE LZTS1 PPP2CB WBP2 ZCCHC17 CLIP3 NDUFB8 C9ORF16 PDZD11 STMN2 AES PPP2R2C ITM2B TMA7 NREP FAM174A FAT3 C19ORF70 PNMA2 MDH1 PVRL1 MAPRE2 TCEAL2 SERPINE2 RPL10A WBSCR17 EPDR1 MTPN CTNND2 NDUFS5 APP COL24A1 ALDOC PTPRT RPS26 FKBP8 PPA1 RAB1A MORF4L1 SLC25A5 GABARAPL1 D4S234E ARL8B MT-ND5 FIGN FABP7 VSTM2L NELL1 C11ORF31 FAM149B1 MYEOV2 ZFAND5 AZIN1 HN1 PI4KA CDK17 MRPL55 SPARC ATP6V1A PFDN4 P2RY14 SDCBP ANAPC13 RPL26 KITLG SH3RF1 ENSA FGF12 CHL1 FTL ERH PDE1A EPHB1 GPR98 SUMO1 PAK1 MCHR2 DBNDD1 DMTN ARHGDIG ADSS HTR1F NPAS3 CAPZB ARL2BP CCDC85B CRYM SH3BGRL2 ADAM23 CHRDL1 RIT2 PRKCG SEZ6L2 RAN TUBB4B SERP2 DNAJC5 ITPR2 PPP3R1 OLA1 PCMT1 MRPS28 MAP4 RPL8 COPS7A DNAJC6 SELM SLC9A1 RP11-195F19.5 LRP1B ATP6V1C1 MYO1B C1QBP PLS3 ACOT7 COX6A1 LMBR1 BAG4 PRDX2 GLIS3 KCNK1 ATP1A2 SEC61G SV2B TERF2IP RPL13 STMN4 RORB ZBTB18 UQCRQ CHP1 HSPE1 USMG5 MFN2 MRPL20 VAMP2 ARF5 SERF2 FAM3C NGRN ALDOA BSCL2 MTRNR2L6 KRT17P6 MIF MBOAT7 AC244489.1 SYTL2\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "cortical layer 2-3 excitatory neuron B" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: RPL26 CLU TMSB10 RPL37A SNAP25 RPL41 RPL13 NPTX1 RPL11 RTN3 RPL39 ACTB GAPDH CHN1 RPL32 RPL17-C18ORF32 GRIN2A MRVI1 RPL38 ANGPTL4 COX4I1 PCP4 APP RPL31 RPL13A RPS26 RPL36A DNAJC21 CREG2 HSP90AB1 GRIN1 OCIAD1 UQCRB OLFM1 RPS27A RPL3 RAB13 RNF212 RAB1A TMA7 PGM2L1 ATP2A2 PKM FAM189A2 NSF PRKACB PPIA NRGN C1ORF194 CCL2 ALCAM SERPINI1 MT-CO1 RPL23A TOMM7 GLUL ATP6V1B2 F3 PTGDS ARPP19 OXR1 VDAC1 PSAP STMN4 MT-CO2 DYNLL2 CYCS RPS15 YWHAG NOTCH1 BANF1 CADM2 FXYD7 CALM2 C9ORF16 SLC22A17 COX7A2L RPS28 TSPYL1 HDLBP TMSB4X ATP5I RP11-219A15.1 HNRNPA1P40 BIRC5 OR6D1P OST4 WASL BST2 SERF2 OPCML ATP5O HDDC2 PPAP2B CLDND2 WLS ATP5E SLC9A9 SLC6A1 SUSD4 ATP6V0B PTPRN PRKCB SEPW1 C11ORF31 NPTN DMTN C19ORF43 RPL15 MAP1B THSD7A RAB3A NNAT SYT1 PNMA2 FAM3C MT-CYB C16ORF13 HILPDA CSDE1 BCAS2 YWHAH GNG3 KIFAP3 SRP14 ETV5 BASP1 CKB MT-CO3 UBE2N WBP11 BAD KIAA1755 CPE STX1B TPI1 TCEB2 CFH DCTN1 CALM3 MFSD2A EIF4A2 HNRNPH2 REEP5 GUK1 COX6B1 FXYD6 SYPL1 C2ORF80 SLC38A1 MAPK1 TOMM20 GPR56 FGF2 PJA2 CTNNA2 RHOB AES BSG C1QBP COX6A1 SELM MTCH1 BAI2 ADAM23 HEPACAM C12ORF49 GABRA5 NDUFB1 BOC MTRNR2L12 MFGE8 MRPL33 HN1 C14ORF2 TSPAN7 RAB6A DPYSL2 MRPS21 RPS4X PREPL EIF1B SCOC SOD1 COX6C APLP1 LIMK1 SLC9A6 DYNLRB1 PPP3CA STK24 SYN2 BCKDK SPCS2 TPRG1L GJA1 SERPINA3 PEF1 ATP6AP2 SLC1A2 COL5A3 MT-ND4 AEBP1 CLIP3 DLD MT3 TMEM141 CHL1 POLR2I PI4KA SLC1A3 SNRPN TSPYL5 ENO2 PEPD SCG2 VDAC3 YWHAB TCEB1 LMO3 LDHB PSMA7 APOLD1 TBCA GADD45B APBB1 SYT11 SALL2 NAPA SV2B GDI1 LMBR1 ALDH1L1 STMN1 PCMT1 ITFG1 NELL2 PITHD1 NRF1 NAA38 TAF7L USMG5 HCN1 TRAPPC1 PPP3CB AP1S1 SPOCK2 ALKBH7 CASP7 FAIM2 IGFN1 EPS15 KIF3C OAZ1 RTN4 PRNP MT2A UBE2M RPL35 PBXIP1 DIRAS2 PPP3R1 TUBD1 VSTM2A NDUFS5 ARL6IP5 UBE2V2 MLLT11 TMEM258 TSC22D1 RTN1 PLCB1 SNCA AZIN1 HSPB1 UQCRQ RAB11A PTMA SYN1 ACP1 EID1 MTX3 RPS6 CCDC124 PPA1 OLFM2 HMGCS1 ATP1A1 TMEM130 ANXA6 COX7C HOMER1 HTRA1 GSKIP TMEM59L FBXL15 SLC25A6 SPARCL1 NAP1L3 PPDPF TESPA1 SCD RPS5 TUBB2B BHLHE40 COX5B DDN BCL6 NAPB NEFL ATP2B2 DIO2 PEBP1 RAB3C AK5 ZNF385D SYTL2 RAB3B ALDOA C20ORF24 RNASEK-C17ORF49 RPL21 AC244489.1 GPR98 ATP6V1G2 RPS10\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "cortical layer 2-3 excitatory neuron B" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: RAB3B RTN4 OR6D1P SNAP25 ACTB FAT3 CHN1 GPM6A BIRC5 PGM2L1 ENC1 HOMER1 RP11-111M22.2 ZNF385D IMMP1L CBX6 CKB ARL6IP1 HMGCR ZBTB20 CALM1 TUBB2A ATP1B1 MT-ND1 STMN1 CREG2 SNRPN PEA15 PLD3 PRNP C11ORF31 PKM B3GNT1 PLCB1 NR1I3 HNRNPA1P40 ESCO2 TUBD1 ATP6V1E1 VDAC1 GABARAPL2 RPL23A LL0XNC01-16G2.1 MRPL11 CALM2 EIF4G2 PDGFD RPL31 UBE2N COX5A TSC22D1 RHBDD2 RPL11 UROD LMO4 APP GPR26 AQP4 UBE2QL1 RPH3A ATP6AP2 ATP5J PTMA KCNC3 TCEB2 TMSB4X SRP54-AS1 CDC37 ATP6V1A KIF25 ELAVL4 ATP2A2 MAPRE3 SST ATP1A1 YJEFN3 YWHAZ RPL10A GNB1 CLSTN1 CFH MBP PRKCE OLFM1 DPYSL2 GABRA1 RPL17 PNKP RAB11A DPY30 MAP2K2 RPL39 PRKAR1B UROS SERPINI1 PRKAR1A PNKD HDLBP NDFIP2 SYT11 ZNF385A RPL8 TBR1 PJA2 CCDC25 HOPX BAALC CALM3 NARS RANBP1 MMP24-AS1 OCIAD1 TSPYL4 KIF21A MPPED1 CSDE1 ENO2 ANO3 YWHAQ OPRK1 PSMA7 OXR1 FKBP4 C14ORF2 MAPRE2 CYCS ZFAND5 TOMM20 SEPW1 UQCRC2 YWHAB NDUFC2 SYT13 RP11-195F19.5 PNMAL1 PPM1A MAGED1 FBXL16 SCN1A CCT5 MORF4L2 MT-ND3 ADCYAP1 PHYHIP SPP1 THY1 CABP1 PDE1A TMSB10 CNTNAP5 CAMKK2 PDP1 TOLLIP C1ORF194 SLITRK1 UQCR11 BEX1 PPP3R1 DMKN DKK3 DCLK1 RTN1 PPP2CA LIG1 MAP7D1 DIRAS2 CISD1 MRFAP1 MTX3 KIF1A STXBP1 GAPDH ADAM23 RTN3 CCK RAB3C SNX10 RPL18A MT-ND4 PAM NGFRAP1 TGOLN2 ZBTB18 CADM3 REEP5 MAP1LC3B ECM1 KCNA1 AP1S2 PBX3 GUCY1B3 PSAP FTH1 RPL6 SSTR2 B2M IDS NSF RPS15 AC244489.1\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "cortical layer 2-3 excitatory neuron B" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: RAB3B SNAP25 CALM2 ENC1 NRGN UCHL1 ZNF385D ATP2A2 VSNL1 SYT1 RP11-111M22.2 NECAB1 STXBP1 RTN1 PTMA CREG2 RTN4 CHN1 DNAJC21 ATP1B1 IDS MT-CO2 ACTB SARAF PRKAR1A SCN1A KLC1 ATP5O PRKCB VAMP2 CALM1 CFH CHGB TMSB4X SPOCK1 PIK3R1 FXYD6 GSK3A HOMER1 CAMK2D RGS12 SERPINE2 DNM3 NAPB GPM6A SYT11 MAP1B CCK FTH1 NGFRAP1 PJA2 PGAM1 SERINC3 NRCAM TMSB10 ATP9A HS6ST3 SUMO2 TSC22D1 TGOLN2 GDI1 NPTXR OLFM1 RHOA PNMA2 ESCO2 TBC1D15 ARFGAP2 NR1I3 SPARCL1 KIF21A GSG1L PPP3R1 KRAS PDE1A PEA15 SLC24A2 ENO2 HSP90AB1 CALM3 GRINA CDH8 LGI3 ATP2B2 SLC17A7 MT-CO1 PRKAR1B GTF2H2C_2 PDP1 PPIA YWHAG RAB3A CIAPIN1 LRRIQ1 RAPGEF5 NDUFA11 SLC39A10 RPL23A AP2M1 PREPL CAP2 JUND SERPINI1 RAB3C YWHAZ PCSK1 ZFAND5 PSD3 SCN3B CADM3 SEPW1 EPHA6 ZBTB18 CADM2 ATP6V1A DYNLL1 UBC MLF2 RPL13 GMFB DPP6 ITM2C SUMO1 SYNGR1 PEBP1 RPL26 SLC38A1 RPL41 GAP43 TOLLIP INPP5F TESPA1 PITHD1 UQCRH RELN PGM2L1 ATP1A1 TMEM61 CABP1 SUB1 CDK5R2 CLTC GRIN2A CTC-575D19.1 MT-CO3 RPL3 FABP5 NDUFAF3 NEFL TMOD2 SPARC MDH1 COX7C TUBB4B TSPYL1 APP ATP6V1B2 PLD3 OXR1 NCAM2 HSP90AA1 LPPR4 SV2B PNKP PFDN4 SERINC1 STMN3 YWHAQ PI4KA NELL2 ATP6V0C RP11-20I23.1 OPRM1 BIRC5 ARPP19 NUPR1L ABRACL PEX5L RAB6B NAP1L3 NDUFC2 STAG3 CAMK4 MAP2K2 DIRAS2 FRZB NDUFA1 SPRYD3 CPNE4 METTL7A COX14 AC011043.1 STX1B CHCHD2 RPL38 CYBB HILPDA FKBP1A PROM1 CPE MAPK8IP2 NSF UBA52 PSMA7 GABARAPL1 SLC9A6 ACLY ARPC5L S100A6 C14ORF2 MFSD6 CDC37 UBE2V2 IDI1 PNKD CTNND2 UQCR10 NPTX1 RPS26 NAT8L KIF1A BEX1 CX3CL1 EIF5A2 SLC25A5 DCTN1 ELAVL4 TUBA4A RPL11 FBXO40 HMGCR HBQ1 SLC8A2 SCD5 NDUFB8 CCDC25 TMEM59L GRIN1 STX1A STAG3L5P RP11-632C17__A.1 TBCB SNX10 LINGO1 UQCRC2 CTBP1 TOMM7 PPA1 OAZ1 ITM2B EIF4A2 EPAS1 RASGRF2 SCOC YWHAH EIF1 NCEH1 TSPAN7 MZT2B PPP2R1A CDK5R1 RPS4X CCDC74A C11ORF31 PTPRT C3ORF80 PNMAL1 ELMO1 CKB NEGR1 MAPRE2 DMKN BCAP31 HMP19 COBLL1 RAB6A CSDE1 UQCRB LDB2 PSENEN PKM KLHL12 MT-ND4 PFKP YWHAB ANXA1 CMAS PINK1 APOE GPR158 ZNF365 MTCH1 CCDC110 WBP11 C19ORF70 GUK1 ETV5 C1ORF52 RPL21 TMEM132C UQCRFS1 HSPA8 NWD2 RAB2A KLC2 LMO4 ADAM23 GOT1 MAST3 SYT10 PAK1 NDUFB5 FILIP1 PLCB1 SNAP91 TUBB2A DNAJC6 NPTN ATP6AP2 KIF3C RAB7A TPPP RTN3 COX7A1 TMX4 RGS4 KLHDC3 AP1S1 COX5A SLC6A1 APLP1 TAGLN3 CFL2 EPHB6 CHL1 DLD TALDO1 D4S234E ROBO2 LDHB C18ORF32 CBLN4 HRK HNRNPH2 DMTN WBP2 LMO3 SKP1 TXNDC17 PRPS1 FAM84A CYP2R1 PID1 MORF4L1 UBE2D2 TMA7 ARF1 COX7A2 AZIN1 OLA1 AP3S1 NDFIP2 ITFG1 COL5A2 CAPZA2 ELAVL2 ATP5J CDK14 ATG9B MTPN NCDN SOX6 ATP1A3 ATP1A2 COX7B MT-CYB POLR2L POLR2M ATP6V1E1 MAP2K1 PPP2R2C ATP2B4 RPL15 KCNK1 NGEF SH3GL2 ERBB4 RFX8 SYNPR TMTC4 DDN NDRG2 GAPDH RPL17-C18ORF32 NDUFA5 C2ORF80 CA11 F3 FAM163B BMP3 TMEM144 PPP3CB RSL24D1 SYT4 RPS28 COPG1 COX6B1 PHYHIP PPP3CA CISD1 WFS1 CHP1 CCDC85B PPP2CA TCEAL5 SERPINF1 DCLK1 C1ORF115 NPTX2 SNX3 MYL6B PRKACB BANF1 CYFIP2 ADD2 HOPX NUAK1 ATP6V1F PCMT1 STMN2 PSMD2 RPS6 BEND5 PHF11 BAALC EFR3A TRAPPC1 ID2 CALB1 COL11A1 NAPA BSG ARF3 FAM127A SNX17 MLLT11 CLU UBA1 PPP2R2B COX5B APLP2 RAP1GAP2 CPLX2 BIRC3 RPL35 PIP5K1B AP2S1 RAB11A CLTA PTPN20A CMPK1 FABP7 CLSTN1 YJEFN3 ZCCHC17 BASP1 ALDOA COPS7A IGFBP6 TOMM20 EIF4G2 TUBA1B TMEM35 PCSK1N PSAP UBB ATP4A RORB RASGRP1 TERF2IP SERP2 SPON2 RAB40B SNN STMN1 PFN2 PIN1 ISCU TMEM151A GDA FXYD7 MCHR2 SOD1 NTNG1 PRDX2 CORO2B CAMK2G RPS3A OCIAD1 RPL12 CCDC168 STXBP6 FAT3 PACSIN1 COX4I1 KRT17P6 ARL8B STMN4 ATP6V0E2 RHBDD2 C5ORF63 RPS10 MAP1LC3A RPL32 PGRMC1 PSMD8 IFI27 NUDT4 RNASEK-C17ORF49 RPL6 APOLD1 ATP6V1G2 HNRNPA1P40 AC244489.1 PCDHGA10 PCDHGA5 PCDHGA6 SYTL2\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "cortical layer 2-3 excitatory neuron B" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: SNAP25 MTRNR2L1 CHN1 CLU CALM2 PSD3 ENC1 GPM6A PRNP MT-CO2 ENO2 ATP1B1 RPL31 MT-CO1 MT-CO3 PPP3CA PSAP PNMA2 DKK3 RTN4 SYT1 FAIM2 SERINC1 RPL36A RP11-111M22.2 SYTL2 OLFM1 RPS26 PHYHIP PREPL MT-ND1 MTRNR2L6 RTN3 UQCRB MT-ND2 CALM1 TUBB4A PRKCB ARL6IP1 UBE2QL1 IPCEF1 ZBTB18 ATP2B2 EIF4A2 YWHAB TMA7 OAZ1 MTRNR2L12 KCNAB2 FAM84A OCIAD1 SSBP3 GNAQ ZNF385D MAP1B REEP5 TUBA1B TSPAN7 MAP2K1 APP STXBP1 PKM GUCY1B3 TMSB4X SLC17A7 RAP2A MT-ND4 SCN1A HSP90AB1 RPS28 CNTN1 BEX1 SERPINE2 THY1 CPLX2 CDK5R1 SARAF NDFIP2 SPARCL1 RPL23A RPL38 PEBP1 RPL37A CERS6 FXYD6 CALM3 RPL26 RPL32 RPS27A MTRNR2L8 GABRA1 SYN2 RTN1 TPPP NPTX1 VSNL1 CLTC RASGRF2 MAST3 ATP1A3 MTPN NDRG4 BIRC5 RP11-219A15.1 RPL41 BEX2 DPP6 DSTN EIF1AX NAT8L MYEOV2 ISCA1 NPTN DNM3 MT-CYB MRPL20 PIK3R1 NRSN2 ATP2A2 PPP2CA TSC22D1 ANO3 BSG PHYHIPL ATP1A1 HEY1 MAPK1 SYT4 SERINC3 SV2B PGRMC1 ARL6IP5 NAPB SIRPA RPL18A CTSD STMN1 RPS3A ATP6V0E2 NAP1L2 TMEM130 RAPGEF5 SYT13 UQCRH RPL13A LMO4 PJA2 ACTB ARF3 TRIM36 HAPLN4 NAP1L3 CA11 CSDE1 CAP2 CHL1 WASF1 WSB2 TOMM20 PEA15 PTK2B ENO1 RPL35 MMD CCK PCMT1 COX6C EIF1 SLC25A22 VAMP2 ATP6AP2 PGM2L1 CAB39 IDS EDIL3 RPL11 STMN4 GRIN2A SCAMP5 ARF5 CLSTN1 ATP6V1A DYNLL1 KIF1A ITM2B SCN3B PPIA RPL17-C18ORF32 RPL17 ARFGAP2 TF CMAS TBCA HPRT1 ISOC1 BAI2 LYNX1 ANLN NFE2L1 MRPL33 PPP2R1A NCOA4 GMFB FAT3 PCDH8 ISCU NGEF CAMK2G FAM19A1 TMSB10 VSTM2A OAT SLC24A2 CLTA CAMKK2 ATP9A STMN2 HSPE1 RAP1GDS1 NAPA ZFAND5 YWHAQ PCDH19 C14ORF2 PPP1CB ARPP19 CNR1 SCOC SYT11 REPS2 ATP2B4 LPPR4 SYNJ1 AP2B1 TMEM70 COX14 ATP5I AES SOX9 QKI KRAS VDAC1 PPP2R4 ROBO2 KCNK1 CTNND2 ARF1 MAP7D1 RPH3A TRAPPC1 GUCY1A3 GDA ATP5C1 LAMP5 RPL17P50 FAM134A NPTXR STX1A NFIA GPR88 PFN2 YWHAG DYNLL2 ATP5E ATP6V0C STXBP6 YAF2 ARL8A MRPL52 SLC30A3 CA10 ABCC12 MTCH1 CACNG3 SLC35B1 RPL7 EID1 MCHR2 DIRAS2 RBP7 FTH1 RSL24D1 CDK17 CYFIP2 RRAGA UBE2N OR6D1P NCEH1 MORF4L2 PRKACB ACTG1 MPI HCN1 KCNA1 MRPL11 GPR158 RPL10A CD63 ZMAT2 H2AFZ ATP5H SMIM13 VSTM2L OPN3 MFSD6 RPL15 RHBDD2 SNRNP25 PTMA SNX10 RPS6 PFDN4 HSP90AA1 COX7A2 ATP6V1G1 SALL2 CREG2 NRCAM NPAS3 CBLN4 NELL1 NUAK1 SLC39A10 PDP1 NDUFA2 NOP10 MZT1 MAP1A GAPDH MAL2 SNAP91 CLDND1 NREP CADM2 ETV5 ADAM23 GSK3A DDAH1 ATP6V1B2 RPL21 CAMK4 RP11-20I23.1 NMNAT2 AK5 MAPRE2 MTND2P28 PHB PPARGC1A HDLBP KITLG BANF1 BSN ARHGDIG TMEM59L HTR2A EPB41L3 HS6ST3 COQ10B TMEM65 RAD23B BCAP31 ASAP2 C2ORF80 TPT1 DNAJB9 LDB2 CDC37 PPP2R2C MLF2 SLC25A11 YWHAH S100A6 EHD3 GUK1 ATP5G2 PRKCE LDHB NEFL ITM2C KCNV1 CKB ARL2BP CD59 GPATCH4 TOMM7 TUBA1C USMG5 STMND1 TCEAL5 GABARAPL2 C1D CD99L2 RAB3A CYSTM1 CLIP3 PRIM1 SCN2B IQSEC1 PDE1A RPL8 DMTN HSPA8 FXYD7 DKK1 HNRNPH2 UROD PPP2CB PPP1R9B SSTR1 OPCML RAB2A SAP18 WBP2 PI4KA ERH REEP2 APLP1 NECAB1 TMEM155 WBSCR17 PAK1 RAB6B RAB1A TSPYL4 ATP6V1C1 NDUFB8 KIF21A SYN1 ARL4C NCDN RAB3B RPL3 EPHB6 RPL6 NUDT4 KLC1 RNASEK-C17ORF49 ATP6V1G2 CYB5R3 TBC1D15 DNAJC21\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "cortical layer 2-3 excitatory neuron B" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: TBC1D15 ZNF385D RPL37A SNAP25 RTN4 RTN1 MORF4L1 UQCRB CCK PRKACB CABP1 TMA7 HSP90AB1 WASF1 CNTN1 PJA2 TSC22D1 YWHAG CA11 TMSB4X NWD2 CALM2 SCN1A NECAB1 DYNLL1 RPL7 SERPINI1 ACTB HOPX ARPP19 PFDN1 MACROD1 PPP3CA SARAF THSD7A ATP5C1 NDUFB8 IDS IMMP1L ACTG1 ENC1 STMN3 PLD3 HMGCR TENM3 APP ATP6AP2 RP11-219A15.1 SEPW1 CD99L2 USMG5 CRIP2 RAB1A TOMM7 MAP1B PIK3R1 TMSB10 RP11-111M22.2 NAPB COX4I1 ARL2BP RPL10A GABRA1 MRPL55 VDAC1 RPS27A PPIH ATP2B2 C16ORF93 GNAQ RPS28 SLC12A5 GRINA NDFIP1 TMEM117 ATP6V0C RP11-20I23.1 ARFGAP2 SSTR2 ENSA GRIN1 PKM KCNAB2 MAL2 SMAP2 RPL3 TUBA1B LPPR4 NPTXR SRP14 OSMR HSPB3 RAB3A KIF1A CDS1 DGUOK PRKCB BSN PSD3 KLHL12 C19ORF70 GNG2 RASGRF2 ANGPT2 STMN1 PNKP BNIP3 IQSEC1 YWHAH MAP2K4 UQCRH PGRMC1 ATP5J2 RPL26 C1QL2 TBCA RPL13A NRGN PSMC1 BEX1 PPARGC1A REPS2 KLC1 ARF5 CLIP3 SYT13 MZT2B ARL8A EIF1B RTN4R CLTA FBXL15 C6ORF141 NDN BSG EDF1 TBR1 SUB1 RAPGEF5 NDUFS5 H2AFZ AP1S1 PTGES3 RPS26 MYEOV2 COX6C TDRD7 NUDT21 LAMP5 IGSF21 SUMO2 CAPZA2 EGR3 C2ORF74 MIEN1 CDK17 CKB PTPRT MT-CO1 DSTN MESP2 YWHAB NDRG4 SPARCL1 RPS4X KIF21A ITM2B C1ORF233 ATP6V1A SLC39A10 DLD RPL23A NPTN MT-ND2 CHL1 NDUFA4 RPL38 PPP3CB NGFRAP1 RP11-195F19.5 NOP10 RPL15 SCAMP5 SERINC3 TUBD1 CADM2 CDK5R1 OAT LINC00116 MRPS21 PRKAR1A NDUFB4 RGCC EFR3A PTPRS SNRPN CLSTN1 RPL39 SLC22A17 ELAVL4 MAP1A RTN3 PGAM1 NRAS SUMO1 CBX3P5 TMOD2 YWHAQ REEP2 CBLN4 PPP2CA MT-ATP6 HIGD1A FTH1 TMEM130 NCDN CD63 COX14 SNX10 PPP2R2C ATP6V1F ATPAF1 APLP2 NEGR1 PNMA2 SYNJ1 SYNGR1 NREP MT-ND1 CHN1 ATP5F1 NDUFA5 OLFM1 MYOM2 KIF5A STMN2 RFK OCIAD1 SOD1 TMEM65 SYN2 PLCB1 NTNG1 NCALD PPP2R1A APBB1 LANCL1 RRAGA ATP5E IDI1 CLPTM1 CDH13 MT-CO3 SALL2 GRIN2A EIF1AX HPRT1 OPN3 TSPYL5 MTCH1 PIN1 COX7A2 OPA1 MAP7D1 TMTC4 CDK14 STMN4 SLITRK1 RPL17 PREX2 JOSD2 THY1 GPM6A TOMM20 NDUFB11 RAB3C UQCRC1 FAM19A1 TRIM36 ATP5I ANKRD20A11P YWHAZ TPI1 TMEM150C NDUFA1 FBXW11 YJEFN3 RGS4 RAB6A TPD52 RLIM ATP5H CACNG3 SNX3 ADD2 NGEF APLP1 GHITM SCN3B PDE1A GNB1 PEX5L RAB2A EIF4A2 NDUFA13 PTGER3 ARPC5L MLLT11 EPHA6 AC244489.1 MTHFS RPL21 C11ORF31 PLEKHD1 RAB3B SYTL2\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "cortical layer 2-3 excitatory neuron B" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MT-CO3 MT-CYB MT-ND1 MT-CO1 MT-ND3 ZNF385D HSP90AA1 SNAP25 CALM1 CDC37 CALM2 MT-CO2 MT-ND4 RP11-111M22.2 MT-ND2 RASGRF1 PPP3CA HSP90AB1 DCTN1 JUNB ATP1B1 MTND1P23 UQCRQ NRN1 ATP6V0D1 UCHL1 TCEAL5 DPYSL2 ATP1A3 PEG10 ATP6V1E1 DIRAS2 KCNA1 VDAC1 CHL1 SYT1 RPL37A NPTXR LDB2 ITFG1 ATP6V1B2 KCNMB4 TMSB10 RAB7A MAP2K4 BSG MORF4L1 NHP2L1 LMO4 RPL21 UROS PPDPF PFDN1 ZMAT2 CREG2 CPE ARPP19 PSD3 PDE1A SERPINI1 PRKCB ATP6V1C1 SIRPA KCNK1 NECAB1 NCDN ELAVL2 VSNL1 RPS6 NGFRAP1 RPL35 RTN1 RSL24D1 MT-ND4L SCOC CLDND1 MTRNR2L8 BAG4 YWHAG CHMP4B SEZ6L2 TRIM36 PRNP MAP4 CRIP2 RAB2A FBXL15 BIRC5 DCLK1 TBR1 PTCHD4 MAPK8IP2 CTSD COX14 PSAP MTRNR2L1 GPR56 RAB6A LL0XNC01-16G2.1 CFH MT-ATP6 NSF IDS MTATP6P1 MTRNR2L6 RELN\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "cortical layer 2-3 excitatory neuron B" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: SNAP25 RAB3B TMSB10 TMSB4X CALM2 ARPP19 MT-CO2 CALM3 MT-CO1 MT-ND4 RP11-111M22.2 SYT1 RTN3 MT-CO3 CARTPT CALM1 ATP2B2 RTN1 CHN1 RTN4 CCK YWHAH RPL17-C18ORF32 YWHAZ NRGN MT-ND1 SYTL2 FTH1 YWHAG TSC22D1 HOPX RPL38 EIF4A2 PSAP NEFL RPL37A SPARCL1 ATP5E GAP43 OCIAD1 GABRA1 OLFM1 NDUFA4 MT-ND2 TSPYL1 ARL6IP1 LMO4 RPL41 ENC1 GPM6A VSNL1 ATP1B1 TUBA1A PTMA UQCRB STXBP1 COX7C LMO3 CLU NDRG4 DYNLL1 NECAB1 PDCD5 RPL31 MTCH1 PRNP HSP90AB1 SNRPN PKM TPI1 RPS6 COX6C DCLK1 PREPL PHYHIP PPP3CA SLC38A11 SERPINE2 DSTN RGS4 SRP14 RPL32 NRCAM PGM2L1 CKB SARAF STMN2 CYCS PEBP1 CADM2 RPL6 MT-CYB GNG3 THY1 TPT1 AP2M1 DPYSL2 RPS28 NGFRAP1 VDAC3 COX6B1 ATP6V0C SNCA RP11-20I23.1 SERF2 RPL21 ENO2 ATP5I RPL13 SERPINI1 SLC22A17 MTX3 PSMC5 WASF1 ATP1A3 ATP5H MORF4L1 CLSTN1 FAT3 RHEB MYL6B RPL35 RPL18A MYEOV2 SEPW1 FKBP1A DYNLT3 SNX3 APP ATP5J2 NDFIP1 COX5B BEX1 PRKACB MT-ATP6 GDI1 RAB6A MAP1LC3A SKP1 ELAVL2 PSD3 KLC1 GAPDH STMN1 WBSCR17 TMEM150C PINK1 CNTN1 COX8A TBC1D15 RPL26 TF BNIP3 GNAQ PJA2 SNCB RPS27A PPDPF SCN1A STX1A DYNLRB1 ETFB EIF1AX STMN4 EFR3A DYNLL2 CERS6 IDS CREG2 TOMM20 FAM84A ATP6V1B2 NHP2L1 ACTB DIRAS2 HS6ST3 SERINC1 ARF5 PGK1 HSP90AA1 HOMER1 ARL6IP5 FXYD7 NDUFB2 DNAJC6 UQCRQ ATP5J PGAM1 MRPS21 USMG5 SPTBN1 NDUFB8 KLHDC3 SNCG NDUFS5 SNX10 TUBB4A KIFAP3 EPHA6 EDF1 YWHAB EIF1 RNASEK-C17ORF49 ITM2B MAST3 PRKCB SNAP91 GHITM NPTXR LPPR4 NELL2 UQCR11 ANO3 CLTC PRDX5 MT3 NCALD SH3BGRL2 VPS35 ARF3 MAP1B AP2B1 COA3 SCOC TERF2IP ELAVL4 VAMP2 RPS3A MT-ND3 ZNF365 COX4I1 RPL23A KCNV1 TGOLN2 MGST3 SNRNP25 PPIA ALDOA GTF2H2C_2 OR6D1P APLP2 ERH OPRM1 SLC24A2 PPP2CA MAPRE3 HIGD1A SMS EHD3 RAB40B HINT1 UBL5 RORB POLR2I MTATP6P1 D4S234E NEGR1 NDUFAB1 NSF CNGB1 GLO1 TCEB1 ATP5F1 BHLHE40 CHMP5 CHCHD2 ATP5A1 NAPA UQCRC2 CDH13 TPGS2 C1QBP POLR3H MCHR2 RABAC1 NCEH1 TUBB2A CACNG3 SCAND1 NAP1L3 IDI1 APLP1 C14ORF2 LSM4 FAIM2 POLR2K NDUFB5 PEX5L RAPGEF5 LINC01296 TMEM65 LYNX1 FKBP8 SLC12A5 NCDN TAGLN3 SCN1B PCDHGA5 NUAK1 WBP2 RPS4X ZNF725P TBCB PACSIN1 SLC17A7 OAT CAPZB SEZ6L2 RAB6B GRIN2A COX7A2 TMX4 CAMK2D TCEAL5 TMEM230 ATP6V1F PET100 CRYM BCKDHB CPE NPTX1 RRM2B GDA GPX4 KLK5 ACLY TMEM59L C19ORF70 EGR1 SCN2B COX14 PLCB1 DNAJB6 MUM1L1 MTRNR2L1 ITFG1 LINGO1 NDUFS6 RPL7 FAM163B ABHD14A SUMO1 C1ORF52 SULT4A1 PSMD8 MT-ND5 PHPT1 SSTR2 TMEM35 ARHGAP35 NDUFB7 COPE SYT4 RPL13A GOT1 TPD52 RPS15 ATP6V1A ARL1 ANXA6 UBB ZFAND5 MAPK1 OAZ1 GNB1 BCAT1 HCN1 C19ORF53 UBE2QL1 TEFM WSB2 FXYD6 ATP1A1 DPY30 PPA1 COX6A1 ATP5B SV2B CMAS BCKDK ATP9A NDRG3 SCG2 RPL10A MDH1 EPDR1 NDUFA1 SYNPR CDC37 PI4KA RBX1 CEND1 SOD1 HMGCS1 BASP1 TM2D3 NAPB CAPNS1 PFN2 MSMO1 BSN UQCRH SLC9A6 SNN UBE2D2 GRIN1 NEUROD2 SMAP2 MAL2 SYNGR1 NAT8L TCEB2 TLN2 TOLLIP NCBP2-AS2 ATP6V0B INSIG1 RHBDD2 ATP2A2 CPLX2 SLC39A10 GRM3 CA10 ASAP1 ATP5G3 RPL12 TUBB NR1I3 BIRC5 CCDC168 WDR47 OXR1 MET MYL12B CRIM1 BANF1 MTRNR2L12 BRICD5 CBX3P5 ATP5G1 NRN1 IPCEF1 PNKD ATP5C1 TMEM151A SPDL1 HRK KCNH5 NAP1L2 PROCA1 TBCA TPPP LGALS1 RFK TXNDC17 MRFAP1 AP2S1 MRPL37 UBE2V2 NEUROD1 BAI2 PPP3R1 TMEM164 LRP1B DCTN3 SUMO2 RPL11 NFIA SSBP3 CISD1 SYT11 MRPL11 TOMM7 PSMA7 GMFB SERP2 FAM219A MAGED2 CADPS2 SELM FAM19A2 TENM3 RAB11A EDIL3 SLC38A1 NDUFA12 ARF1 PTPRN2 RPL3 CABP1 UBE2N TIGD4 AZIN1 FAM174A RPL15 CASP7 SMIM1 GPR88 PIK3C2G LIPT2 ADAM23 ID2 CTSD RASGRF2 NBL1 RP11-195F19.5 PPP1CB HAPLN4 KIF1A SELT CAB39 SRP9 SYPL1 PPP3CB RAB3C SLC25A5 MT-ND4L CDS1 TMEM14A MLF2 LINC00116 YJEFN3 NNAT BRK1 ARPC5L UROD PRDM8 PSMB5 NGEF IDH3A PBX3 C14ORF132 C4ORF3 MMD ATP6AP1 CAMKK2 BEX4 MLLT11 RAB1A KCNMB4 PTGES3 AP1S1 TMOD2 CSDE1 ELMO1 DIRAS1 JUND ARL8B APOD DPP6 SYNPO MB21D2 CNTROB GMFG SLC30A3 NDUFB1 MAPRE2 ADD2 ACOT4 PPP2R2B MTRNR2L6 CLIP2 COX7B SMIM13 TMA7 RPS12 ROBO2 CCDC184 RAB7A LAGE3 NFE2L1 NPTN PTPRS DNAJA1 C9ORF16 GRINA CHL1 DDAH1 DCTPP1 ARL2BP SYT5 PRKAR1B MTRNR2L8 ASPDH TRIM47 MPC2 AURKAIP1 DNAJB9 RAN RASGRF1 LAMTOR5 COX17 GPR171 GDE1 TCEA2 IGFBP6 STMN3 CMPK1 KIF21A SDHAF1 PEA15 ZBBX GABARAPL2 RPL39 CCDC115 TMEM160 SLC6A17 SIRPA GSTO1 NTNG1 COX5A PCBP1 ALDH5A1 TRAPPC1 RASGRP1 PRDX1 RHOB ATP5O POU3F1 RAP2A SDCBP PPP1R9B CACNB1 RHOA PIN1 TUBA4A NDUFA11 DOCK10 GPCPD1 UQCR10 TOMM70A SH3BGRL3 REEP5 FNDC4 ATP6V1G1 SUMO3 ATP6V0D1 DYNC1I1 KIF5A FKBP4 GPR116 GPR6 STX1B OTOA SEC61G NME1 PSMD2 UBA1 SCD5 SPOCK1 MAP2K2 ITM2C PCMT1 TMEM147 SPOCK3 HPCA MTPN CTNNA2 FTL IQSEC1 HILPDA CYP2R1 C2ORF80 WARS NMNAT2 NPAS3 HMP19 MKX THYN1 JUN SLC1A2 C3ORF80 SLIT1 MRPL55 GUCY1B3 PTK2B PCDH19 MAP1A LZTS1 MAPK8IP2 RAB3A COQ10B NEFM EPB41L3 CTXN3 ABCC6P1 RCAN2 LUZP2 RP11-97O12.3 FILIP1L ALCAM TCEAL2 POMP SRP54-AS1 RAB4A KLC2 NDUFA5 FAM127A ANXA7 ZBTB18 ABRACL RP11-133L19.3 PRKCE ATP6AP2 KCNF1 B3GNT1 TESPA1 CAMK4 PMEPA1 SLC8A2 KCNAB2 VSTM2A RNF208 FRMPD2 SLC35B1 TMEM141 TKT S100A6 SGK223 ACTR1A ISCU PLD3 OPN3 SEMA3A DPY19L1 GYG1 GUK1 OLA1 ACTR10 PIP5K1B NGRN NRSN2 DKK3 MAGEH1 TRIM37 EIF4G2 EIF1B VAPB BTBD1 PREX2 NDUFA2 ENOPH1 KCNC2 NOS2 ARL8A EGF AKAP12 RP11-632C17__A.1 RSL24D1 TSPYL5 ASAP2 UROS PRUNE2 COMMD6 PFDN1 LDB2 BEX5 RPL36A C12ORF49 VDAC2 GTF2B VDAC1 FAM149B1 MAGED1 BSCL2 MDH2 GADD45GIP1 FUNDC1 RPH3A SYT13 TUBB3 UBE2M PFN1 TEX40 SPRYD3 NARS RPL8 PGRMC1 TXN ETV1 TUBA1B CAPZA2 PNMA2 CHRDL1 MZT2B FIS1 TRHDE STAG3 AC005042.2 CHGB DCTN1 PAK1 MPPED1 PRDX2 DCLK3 RANBP1 PCGF1 PIK3R1 DAB2 CD63 NDUFA13 RPS10 NUDT21 LDHB APOLD1 ATP6V1G2 CDH8 LAMA2 RPS26 RPL17 AC244489.1\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "cortical layer 2-3 excitatory neuron B" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MT-CO3 MT-CO1 MT-CO2 SYT1 CHN1 MT-ND4 CALM2 ENC1 NRGN SNAP25 MAP1B GDI1 GPM6A SERINC1 MT-ND3 TSC22D1 SYTL2 CALM1 ATP1B1 ARPP19 NPTN MT-CYB RTN4 MT-ATP6 CALM3 HSP90AB1 RGS4 RTN3 YWHAZ DCLK1 CNTN1 CABP1 CDK5R1 CLU ZBTB18 OLFM1 SLC39A10 PJA2 EIF4A2 HOMER1 NECAB1 EGR1 TMSB4X FKBP1A FTH1 PLD3 PKM MTRNR2L12 YWHAH MT-ND2 HTR2A STMN2 GRIN2A PNMA2 LMO4 CAMK2G NAPB GAPDH PPP1CB SPARCL1 RAN MTATP6P1 PRKACB RP11-20I23.1 OXR1 TMSB10 UCHL1 TSPAN7 REEP2 RTN1 RNF11 LMBRD2 DPYSL2 TOMM20 STMN1 TSPYL1 SERPINE2 ACTB VSNL1 PRKAR1A SELT MAPK1 PRKAR1B RHEB ATP6V0C MT-ND5 ATP2B2 PHYHIP CADM2 SNCB PSAP SCN3B TAGLN3 ACTG1 CCK DNAJC21 TBC1D15 NDFIP2 CLSTN1 PDP1 PTPRS NDFIP1 GMFB JUND TGOLN2 FAIM2 TMEM130 TESPA1 RAB3A SARAF KLC1 COX6B1 GABRA1 NGFRAP1 BASP1 SLC17A7 MTRNR2L1 TIMP2 NEFL RHBDD2 PPP3CA STX1A MAP2K1 HOPX MT-ND1 ATP2A2 PSD3 SERINC3 UQCRH NAT8L SLC12A5 SLC9A6 GRIN1 SLC30A3 PRNP GUCY1B3 MT-ND4L APP HMGCS1 MAST3 ADCYAP1 RPL15 ATP6V1G1 NDRG4 MTCH1 ITFG1 CHL1 APLP2 THY1 ENO2 SCOC PTMA BTBD10 ITM2B CPE IDS ARL6IP1 BSN TUBB4A EPHB6 PVRL1 TMEM70 RASGRF2 UBQLN2 DYNLT3 RABAC1 PMEPA1 TOLLIP NCDN MMP24-AS1 SLC1A2 TMEM151A ATP6V0E2 ATP1A3 PTK2B ADAM23 CLTC PITHD1 SYT11 CEND1 DYNLL1 SCAMP5 AP2B1 ERH PRKCG SULT4A1 TM2D3 NAPA SPOCK2 INPP5F ELAVL4 EIF1AX SGK223 SNX10 FAM84A HSP90AA1 ISCU RPL41 HAPLN4 NEUROD6 PPIA CAMK4 CAP2 MGST3 LPPR4 PRUNE2 NR4A1 CREG2 WBP2 CLIP3 DKK3 TENM3 CORO2B CD63 GPR26 RPL36A MAP4 CSDE1 PEBP1 SERPINI1 CX3CL1 PREPL NMNAT2 SLC7A5 AK5 SLC22A17 RP11-111M22.2 TMOD2 CDK5 NDUFA11 PAX7 CADM3 IMMP1L MAPRE3 SNCA WASF1 PEX5L PPP3CB PPP2CA CKB SLC25A11 TUBB2A EGR3 DNAJC6 AZIN1 BNIP3 COL11A1 IPCEF1 PGAM1 SLIT1 ANXA6 JAKMIP1 SNAP91 YWHAG C1ORF115 SYNGR1 BEX1 ARF3 OAZ1 FOS DHCR24 ARHGAP29 STXBP1 DMTN YWHAQ EPDR1 YWHAB MAPRE2 ATP6V0B DDAH1 ENO1 CAMKK2 NEFM CFL1 EFR3A RPS28 RP11-219A15.1 MTRNR2L6 ETFB MIR6723 OR6D1P YJEFN3 TKT RAB40B NAP1L2 PCSK1 LSM4 RAB11A INA GRINA BAI2 NDUFS6 PSMD8 D4S234E FKBP8 NPTXR MPC2 CLPTM1 OPA1 NCEH1 MAP7D1 ANAPC13 COX5A TPPP UBE2QL1 TMEM14A GNAQ EPS15 UBE2M LZTS1 CERS6 HMGCR PGRMC1 ATP9A COL21A1 DNAJB9 GNB1 SRD5A1 MRPL33 WARS NDUFS5 CACNG3 ATP5C1 SHARPIN ATP6V1E1 CDK17 LDB2 SYNPO NDUFB10 SSBP3 CACNB1 PIN1 FAM150B SYNJ1 MAPKAPK2 TBR1 ATXN10 MRAS MAL2 SYT4 ELAVL2 GPCPD1 MPI MYL12B TPRG1L SLC6A17 KCNH5 NEGR1 NRN1 CTXN1 TBCB BSG RAPGEF5 KCNC3 GSK3A NDRG3 C19ORF43 RAB11FIP5 GDF10 EFHD2 ATRN SRP14 ARF5 PFN2 PLP1 LDHB MPPED1 COL5A2 ACTR1A BAG4 NREP EFNB1 EGF RPL18A GABARAPL1 B3GNT1 HS6ST2 CXXC4 VDAC3 DYNLL2 HSPA8 RANBP1 NDUFB2 RPL39 FBXW11 UTRN PCP4 FAT3 LRFN3 PSMD12 TPI1 PRKCB BRK1 RNA5-8SP6 DACH1 HSPBP1 PPARGC1A RASGRF1 CRIP2 PPP2R1A TLN2 HN1 ENOPH1 VAPB TUBA1B CDKN2D IQSEC1 NSF NGRN RAB4A EIF1B PARM1 BHLHE40 CTNNB1 CTU2 GSKIP BIRC5 CTNNA2 RILPL2 PPP2CB FAM127A SLC38A1 KCNAB1 HDDC2 GSG1L SCN1A BEX5 FLOT2 RNF208 RPL38 TCEAL7 DCTN1 SRM ATP6AP1 TMTC1 MRPL20 KCNV1 ATP5G3 SPCS2 KRAS EIF4G2 GHITM RPS15 NPTX1 MT3 OCIAD1 FBXL16 NGEF HEY1 TMX4 LYNX1 RAB3C DUSP6 DNAJA1 CAPNS1 MFSD6 KIF1A KCNK1 CLDND1 SNCG CTSD KCNAB2 NDUFA13 WASL LINC00116 TUBA1A ZFAND5 STRAP ARF1 FKBP1B YIPF3 SPOCK1 COX6C TMEM132D RHOB CCDC184 DNAJB6 CDK14 CA11 ATP2B4 PSMB7 C1ORF95 FNDC4 NCAM2 KIF3C ATP1A1 EFHC2 PEA15 SKP1 RFK RPL35 RP11-195F19.5 RPH3A SNN ARHGDIA MANBAL SIRPA RORB SHD MLLT11 CARTPT GPX4 CLTA PSMC3 SUCLA2 SPTBN1 COL24A1 RAMP1 ZBTB20 NAP1L3 THOC7 TERF2IP FAM163B VDAC1 LANCL1 RLIM PRKCE IGFBP5 ATP5I PRDX5 CPLX1 JUN ISCA1 SCD5 WSB2 HMP19 CBX6 FAM19A2 MORF4L2 APBB1 VPS35 CYFIP2 EDF1 DNER GAP43 C3ORF80 COL12A1 TPT1 LAGE3 COPS8 CHCHD2 CTXN3 ADD2 GABARAP SLC25A6 PTPRN TUBB4B SUMO2 HINT1 EPHA6 AP2M1 NUTF2 MSMO1 CAMK2D FBXO8 PLS3 NDUFA5 EGFL7 MAP1LC3B CRYZ SCN5A FUNDC1 SMS ACOT7 WBSCR17 PSMC5 SUSD4 ATP6V0D1 RPL13 ITM2C RTN4R UBA1 COX7B CAB39 SUMO3 CDC42SE2 TPD52 MCHR2 FAM219A TSPAN33 TALDO1 ETV5 LMO3 TPGS2 CCDC25 PFDN4 TMEM59L COX6A1 FRMPD2 RPL13A NUDT4 TUBB3 RPL17 RPL17-C18ORF32 UBE2F RPL26 ATP6V1G2 PCDHAC1 PCDHA10 PCDHA9 PCDHA4 ARFGAP2 RAB3B\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "cortical layer 2-3 excitatory neuron B" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: SYT1 SNAP25 CALM2 RPL31 TMSB4X RP11-111M22.2 SYTL2 STXBP1 SLC39A10 PREPL MT-CYB CALM1 RPS15 MT-ND4 MTRNR2L1 MT-CO1 RPL26 RTN4 EIF4A2 TPD52 DYNLL1 NRGN RPL32 RAB6A RTN1 MLLT11 ATP1A3 HSP90AB1 RAB3B ACTB ATP6V0B CABP1 PRKACB MT-ND2 FTH1 CYCS RHEB PTMA NGFRAP1 STMN1 SYNGR1 RPL10A CHN1 C18ORF32 ATP1B1 ENC1 USMG5 MAST3 NRN1 CADM2 SRP14 PEX5L OLFM1 MT-CO2 NREP WASF1 CALM3 UQCR10 RPL38 CKB MAP1B ATP6V1F BSN GNG2 SV2B MT-CO3 TUBB2A ZNF385D NDRG4 DLD MT-ND1 PPP2R1A HMP19 NDUFA11 RANBP1 COX4I1 SERINC1 PKM RPL35 BASP1 WASL VGF LDHB SERPINI1 UBE2QL1 C19ORF43 PENK SYT11 HSP90AA1 PPP2R2B PRNP ACOT7 TCEA2 TUBA1B C19ORF70 ENO2 NECAB1 ATP5E DPP6 ADAM23 PDP1 DIRAS2 RTN3 PNMAL1 LAGE3 OLA1 DRAP1 TMEM155 THY1 RPL37A TMSB10 SNCB PEBP1 DPYSL2 TMA7 GNB1 MED10 VAMP2 ACLY B3GNT1 UQCRH BEX4 ATP2B2 DYNLRB1 TPT1 PFN2 GRIN1 NGEF MRPS21 TMX4 RPL41 DNAJC5 PRKCB CLTC BAI2 SNCA NBL1 NDUFB8 RAB40B ARF1 NDFIP2 PNMAL2 TOLLIP IDS OPA1 NRCAM LMO3 CIAPIN1 LGI3 C14ORF2 ARPP19 UQCRC2 PDE1A STMN4 NAP1L3 SPOCK1 SCOC MAP4 PRKCE MTRNR2L6 RPL13 NR1I3 CTC-575D19.1 NSF BSCL2 NDUFA5 SYNGR3 TM2D3 FKBP1A FAM219A KIF21A YAF2 NFIA CORO2B LMO4 RAB3C CA4 SLC6A17 PSAP RLIM PNMA2 RPS28 UBA52 SLC7A1 SPRYD3 UQCRB NUDT21 PPIH RAB3A AP1S1 TAGLN3 FABP6 GAP43 KCNMB4 FAIM2 PCBP1 RPL21 PGM2L1 GUK1 RPL3 CNTN1 H2AFZ YWHAH PPP3CA KIF1A MAP1LC3B GABARAPL1 ATP6V1A CTNNB1 RGS4 NEK7 SLC25A5 CTNNA2 BEX1 CDK5R1 FAM174A CLSTN1 PLOD2 RAPGEF5 EGFL7 ATP5F1 S100A6 SRM CAPZA2 KIF3C FGF12 PRSS3 SEZ6L BSG STMN2 NDRG3 CFL1 GCNT1 NPTX1 MTND2P28 SLC2A1 GPX3 HTR1F MAP2K1 SOD1 ATP6V0D1 PTPRN CHCHD2 CADPS2 ATP5G3 RPS27A CLIC2 PPP1CB BEX2 EPB41L3 ATP6V1C1 GOT1 SLC25A4 IQSEC1 ITFG1 PGRMC1 PINK1 TSPYL4 CPE RPS4X YWHAB CTBP1 SLC25A11 ATP5O GFRA2 C1S RAN MIEN1 NCOA4 HS6ST3 GRIN2A ALCAM ETFB TMEM130 MPC2 NDUFAF3 TKT REEP5 MET ANO3 SAP18 COTL1 HINT1 IL10RA CHL1 NAPA GSK3A TBCA RHOB GADD45B TOMM20 ATP5I LAMA2 C1ORF115 FAT3 PSD3 CLTA RPL8 ATP9A SCN1A CD63 FTL DNM3 UQCRQ BCAT1 OXR1 FIGN ATP6V1E1 HSPE1 RPL12 GAPDH BNIP3 CDKN2D CNTNAP5 ARF3 PSMA7 SH3GL2 ANGPT2 KLF10 MSMO1 JAKMIP1 WBSCR17 YWHAG MRPL11 ENSA ATP6V0E2 CHMP4B NDUFB11 WSB2 NOP10 CDS1 CYC1 NDUFB1 HAPLN4 PNKD CCK GALNT12 RPL39 ZNF365 B3GALT2 CTSD BANF1 TMEM117 MFN2 ATP5G2 TOMM7 POLR2I NDFIP1 UQCR11 AP2B1 PHYHIPL AK5 YWHAQ ATP5G1 MAP2K4 SCAND1 AP2M1 EGR3 RAP1GAP2 ELMO1 SMS CDH8 RAB6B INHBA STXBP6 POLR2M BTBD1 BRK1 NCAM2 MRPL33 COX6B1 ARPC4 WBP11 DKK3 NDUFS6 BIRC5 PCDH8 TPI1 NDUFB4 SERINC3 MT-ND3 SCN3B UHMK1 ARL8A YWHAZ PRKCG MRAP2 ACTR10 APLP1 TENM3 COX7C PFDN1 MT-ATP6 RAB2A FKBP1B TPGS2 NDUFA13 COPRS PPP2CB ZFAND5 ZNF804A RP11-664H7.2 MT-ND5 ATP5J MRPL37 RPL26L1 FKBP8 RPL15 NDUFA1 MTPN NAP1L2 MORF4L2 SLC38A1 GLRA3 REEP2 CPLX1 ARL6IP1 HOPX NEFM CD99L2 MYL6B GPX4 UBE2N SCD5 CYFIP2 WBP2 MTRNR2L12 PRDX1 CAMKK2 TSPAN7 PPIA PACSIN1 SCN1B RABAC1 NPTN LSM4 DDN HPCA FAM134A JUN HDHD1 NDUFA4 NDUFS5 POMP SERF2 TUBB3 NUDT4 RPL36A ATP6V1G2 AC244489.1 PCDHGA5 PCDHGA10 PCDHGA6 TBC1D15\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "cortical layer 2-3 excitatory neuron B" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: RTN4 NRGN TBC1D15 HNRNPA1P40 GLRA3 AK5 SSUH2 ATP1B1 PRDX5 RPL36A CHN1 APLP1 CREG2 SMS MT-CO3 SYT1 PRKCB DMKN BIRC5 ATP6V1B2 SLC22A17 ENC1 VSTM2L RTN3 CLTC RAB3B SYTL2 ESCO2 AP2M1 RGS4 RPH3A VAMP2 RPS28 ZFAND5 FAT3 RPS12 OR6D1P CNGB1 EIF1B RPS15 CPLX2 SV2B C20ORF24 ARPP19 NBL1 GPR37 CX3CL1 SLC9A6 PDE1A CALM2 RAP1GAP2 NAT8L LDB2 PPP3CB DCLK1 TMSB10 TMEM151A CSDE1 ADSS DNM3 ACTB PREPL COX4I1 MFN2 ATP1A1 MT-ND3 LMO3 GDA MT-CO1 MAPK1 MT-CO2 DPP6 BEX4 PRNP VAPB SLC39A10 PRUNE2 DDAH1 MT-ATP6 UROS UQCRH ARL2BP FAM131B SOD1 FKBP1A JUND REPS2 RP11-111M22.2 TMEM59L RTN1 WASF1 GNAQ CDKN1A MAL2 ATP5J UBC DLD KCNK1 CCDC25 FBXW11 TF ATP5I GNB1 NCDN PSAP COX6C MYEOV2 PDP1 DMTN SNAP25 HINT1 ANO3 GAP43 CHGB RHBDD2 SARAF CCK PEX5L RPL26 CALM3 MORF4L1 CHMP4B ARL6IP5 TUBA1A CKB UBE2D2 C12ORF57 HSP90AB1 TESPA1 HSP90AA1 IGFBP6 CA11 CMAS SUCLA2 SPRTN CYCS NDUFB10 SEPW1 CAP2 ATP2B4 RPL41 DIRAS1 ITM2B ASB13 NECAB1 CALM1 ATP5E CDH22 MAP2K1 NGFRAP1 HPRT1 SLC30A3 RPL3 FBXO2 PAQR9 DPF3 SMAP2 STMN1 CERS6 PPP3R1 ALG3 NSF RPS3A RNASEK-C17ORF49 ARF5 ATP6V1G2 PCDHGA5 PCDHGA6 PCDHGA10\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "cortical layer 2-3 excitatory neuron B" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: ZNF385D PPP3CA ATP1B1 RAB3B SNAP25 MAP1B CALM2 RTN4 GPM6A MT-CO3 CALM1 MT-CO1 GAPDH MT-ND2 CHN1 CCK MT-ND4 RTN3 SYT1 PRKACB TSPYL1 TMSB4X CLU SLC22A17 ARPP19 NECAB1 PRKCB PSAP MT-CO2 VSNL1 SLC39A10 CPE PSD3 HSP90AB1 YWHAH CHL1 PRKCG PREPL ENC1 SKP1 NRGN GRIN1 MT-ND1 PRNP NRCAM PNMA2 MT-ATP6 OXR1 TUBA1A CLTC RP11-111M22.2 AK5 ENO2 CREG2 TMEM59L ACTB PTPRS PGM2L1 RPL37A RPH3A DKK3 CABP1 YWHAZ CALM3 UCHL1 ATP2B2 PJA2 PDP1 CLSTN1 PCMT1 NGFRAP1 AP2M1 MT-CYB TUBA1B WASF1 SERINC3 APLP1 HSP90AA1 COX4I1 HOPX GHITM RTN1 SYTL2 CEND1 REEP5 SCN3B SEZ6L MTPN KIF5A ARL6IP1 CFL1 APLP2 GABARAPL2 SLC17A7 PPIA HMGCS1 C14ORF2 DNAJB6 ITM2B CTNNB1 MLF2 PIK3R1 KCNC2 CRIP2 NPTX1 PLD3 TUBB2A BSG PHYHIP NGEF TSC22D1 RHBDD2 GABRA1 YWHAB ATP2A2 GOT1 SPTBN1 RAB7A EPB41L3 SERINC1 FAM127A MTATP6P1 YWHAG STMN1 PCDHGA5 SPARCL1 GAP43 KIF21A NDUFA13 PPP3CB NELL2 MT-ND3 BIRC5 OPCML SUMO2 NDUFB1 TESPA1 SH3GL2 GRIN2A RGS4 GABARAPL1 ARHGDIG HNRNPA1P40 ARFGAP2 ATP1A1 CAPZA2 BEX1 STMN3 MAP2K4 RAB6B MPL TOMM20 RNF11 NRSN2 UQCRB PTK2B PRKAR1B GUCY1B3 SYN2 TPI1 FAM84A PPP2R2C APP RPL13 NDRG4 MRPL20 RPL31 VDAC3 PKM PEA15 TMOD2 CAB39 DMTN ISCU EGR3 CYCS ANO3 RAP1GDS1 FABP7 LMO3 MAPK1 THY1 SYNGR3 RPS12 RPL41 OLFM1 RPL13A C14ORF132 HSPA8 STXBP1 NHP2L1 GRM3 TOMM7 ZFAND5 STMN2 GUK1 PI4KA VSTM2A SNRPN ANGPT2 SPAG17 DSTN TOLLIP TMEM147 CYFIP2 CISD1 MFSD6 PLCB1 SNX10 YR211F11.2 PCDHA4 NEGR1 ATP6V1B2 SMAP2 MDH1 UBA52 CTC-575D19.1 FKBP1B DYNLT3 MRFAP1 TCEB2 CAMKK2 STMN4 DYNLL1 BAI2 BSN KLC1 RAB2A VDAC1 ACTR10 NDUFA1 BLOC1S1 PTPRN SOD1 TPD52 C1ORF56 MTX3 OPN3 MAPRE3 UBB PPP2CA OAZ1 COX6B1 GPR171 LMO4 GDI1 CADM2 RAB6A ZBTB18 MFN2 CDC42SE2 JAKMIP1 ZNF804A NDUFS5 CKB NDUFAF2 GNG2 TUBB4A MTRNR2L12 NREP UQCR10 HCN1 MCHR2 PEX5L TPT1 CACNG3 FSCN1 RPL21 TUBD1 TERF2IP ATP5O UQCRH MAST3 RAPGEF5 NIPA1 NFE2L1 MRPL55 NR1I3 PCDHGA6 SLC1A2 COX5B MAP2K2 TUBB4B RPL10A ARL4C IQCK SUMO3 TM2D3 REEP2 MAGED1 NDUFAF3 CNGB1 SNX3 MTRNR2L1 PSMA7 C2ORF80 CRKL ADSS HMGCR MRPS21 UBE2V2 RSPH9 PRKCE SLITRK1 ZBBX KCNAB2 CA4 CLTA USMG5 INPP5F ARL6IP5 HN1 STRAP ITM2C ONECUT2 YWHAQ MT3 MTRNR2L8 GPX4 FILIP1 TEX2 MMD OPA1 PPM1A FXYD6 PCDH8 ITFG1 LCNL1 FAM19A1 PET100 GPD1 C1ORF95 TKT NELL1 RAD23B RAB37 NBL1 RASGRF2 TAGLN3 GADD45GIP1 FAM174A SRP14 GTF2B SIRPA MTRNR2L6 MYL12B RELN ATP6V0C ATP2B4 SUB1 TMEM230 GRINA SPRYD3 TPGS2 SYNPR NAP1L5 GPX1 TSPYL4 PACSIN1 KCNV1 LDOC1 NDUFC2 NPTN ARL8B SQLE TUBB3 RPL7 ZMAT2 CHP1 BCL11B ATP1A3 OST4 ATRN ATP6AP1 KCNMB4 EPDR1 FAM229A SYT17 KIAA1045 CYP26B1 NTNG1 UQCR11 C9ORF16 COX7A2 WBP2 CTBP1 RASGRP1 TUBA4A BANF1 ELAVL2 COX7C MRPL33 TMEM130 CA11 UQCRC1 CORO2B EPHB1 TPRG1L RHOA FAM96B AKAP12 ADAM23 SLC12A5 C11ORF31 TCEAL7 TMX4 OCIAD1 NAT8L CDK14 NPTXR BEX4 TSPAN7 CDH13 CHMP5 RPL38 ATP5F1 HEY1 CDHR1 NAPA RP11-195F19.5 MAP1LC3A SERPINE2 GSTO1 FBXL15 CNTN1 SCAMP5 LPPR4 RPL32 MORF4L2 DIRAS2 FXYD7 MORF4L1 COX5A FTL ZNF880 SYT11 PAFAH1B2 POLR2K MPZL3 CLIP3 CTU2 HK1 ARF1 ATP6V0E2 ATP6V1E1 TMSB10 TCEB1 SLIT1 PPP3R1 PINK1 EGR1 RPS4X HINT1 RPL39 GJB5 UBC CNR1 NDUFV1 FBXL16 LDOC1L SYNPO SYT4 SLC25A6 PNKD NCAM2 PDE1A RPL36A SDCBP OR6D1P DHCR24 CAMK4 EID1 BASP1 HSPBP1 PTPN20A ALCAM RPL26 PAK1 RFK CDK5R1 EPHB6 JUNB KIFAP3 C1ORF115 ZBTB45 SLC8A2 MAL2 PPP2R1A AP1S1 FAM19A2 SEPW1 RABAC1 ANAPC13 KCNK1 RCAN2 CDKN2D HAPLN4 GALNT12 PRUNE2 SLC25A53 DPP6 MT-ND5 PITPNA VAMP2 CADM3 HMP19 BTNL9 CDC37 SPCS2 SUCLA2 SV2B ACTG1 ATP5B CAP2 DCLK1 MFSD2A FAM134A NCALD IGSF21 FTH1 REPS2 PTMA EIF4A2 SPOCK2 NDUFA8 ATP5J NDUFB7 TMEM132D FIS1 CCDC85B FAIM2 NCEH1 RPL35 RPS6 LAMP5 PSMD8 GPR98 MYOM2 CHI3L1 DYNC1I1 ATP5A1 RAN ALDOA NMNAT2 AES JUND NAP1L3 PFDN4 SH3BGRL3 TBCA SLC24A2 DNAJA1 SYT13 PCDH19 IDH3A BSCL2 HSPA4 RASSF3 MYL6 SPOCK3 VSTM2L PCBP1 WSB2 SERF2 UQCRC2 PCDH17 ZNF365 VPS35 CRYM FOSB ADD2 MYBL1 BTBD10 MZT1 RP11-20I23.1 PPIH CENPVP3 CDH8 RNF208 NUAK1 NSF CBLN4 APBB1 TMSB4XP4 MLLT11 EGFL7 NDUFB4 RRAGA GPR26 UBA1 LDB2 TCEAL3 THSD7A NNAT NGRN SARAF BDNF WASL CPLX1 PRDM16 STX1B TBC1D7 ATP6AP2 EIF1 NRF1 HS6ST3 SYNJ1 SLC25A4 KIF3C ARF5 NEFL OAT ID2 PPP2R4 ATP6V0D1 MAP2K1 PTGDS PHYHIPL MARCKS BUB1B TMC2 COPS8 KLC2 LRRIQ1 CXCL14 NWD2 TRABD2A SCN1A PCDHGA10 PDCD5 H2AFZ NDFIP1 CYSTM1 HOMER1 C1ORF52 ATP6V1G2 RPL3 RNF212 PSMB3 RPL17-C18ORF32 RNASEK-C17ORF49 COX6A1 NUDT4 PSMC1 RPL17 IDS\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "cortical layer 2-3 excitatory neuron B" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: SNAP25 SYT1 CALM2 MT-CO2 CHN1 CALM1 RTN1 SYTL2 MT-ND4 MT-CO3 GPM6A RAB3B NECAB1 RTN4 NRGN CDK5R1 ENC1 PPP3CA LMO4 TSPYL1 ARPP19 HSP90AB1 TUBB2A CLU APLP1 ATP1B1 SPARCL1 SEPW1 MT-ND2 EIF4A2 GRIN2A ATP1A1 YWHAG PRKCB MTRNR2L12 MT-CO1 SLC22A17 ATP6V1A GDI1 CALM3 CCK PGRMC1 SERINC1 PREPL RPL37A CREG2 NPTN ATP2A2 GAPDH NGFRAP1 HNRNPA1P40 MDH1 PPP3CB PRKACB CLSTN1 PRNP CKB YWHAQ GHITM ACTB RPL38 NDFIP2 CADM2 CBLN4 C14ORF2 RPS15 MT-CYB VSNL1 LMO3 YWHAZ PJA2 STXBP1 SYT11 HSP90AA1 RPL21 TBC1D15 ZNF385D PSAP SCN3B CNTN1 RLIM TMSB4X PKM TSPAN7 OLFM1 EPB41L3 TUBA1B CABP1 PGAM1 MT-ATP6 VAMP2 DCLK1 SCG2 RP11-111M22.2 CDH13 SCN1A GRIN1 DKK3 HMP19 NDFIP1 SIRPA ATP1A3 PSD3 NAP1L2 BNIP3 APP NPTXR DNAJA1 RPS12 CAMK4 ARL6IP1 RPS28 KCNA1 B3GNT1 SUMO2 GUCY1B3 SLC24A2 STMN2 PRKAR1A KIF5A PNMAL1 ATP6AP2 ZBTB18 ENSA FXYD6 RAB6A TESPA1 UQCRQ SLC39A10 RPL36A SERPINE2 RPL31 FAT3 BEX4 NPTX1 SUSD4 FAIM2 PPP1CB NEGR1 HPRT1 NAT8L LDB2 NDUFB2 OCIAD1 TMSB10 SH3GL2 KCNK1 TBR1 RPL26 AK5 MYL6 RPL41 ENO2 SLC9A6 SARAF SYN2 RTN3 NEFL OPA1 RAB6B CAP2 MARCKS GRINA YWHAB ARL8B RAB3A ATP6V0E2 PIK3R1 NUAK1 RPL13A ATP6V1B2 SLC12A5 WASF1 ATP5J2 ARFGAP2 RP11-20I23.1 ATP6V0C IDS PHYHIP SV2B SMAP2 KCNAB2 RGS4 SLIT1 RAN PPP2R1A LMBRD2 PNMA1 TCEB1 RAB3C WBP2 SYNJ1 PLD3 MTRNR2L8 REEP5 RPS3A PCP4 BSN NREP SNRPN H2AFZ PDE1A MT-ND3 HCN1 TMA7 AP2B1 SUB1 TMEM59L TOMM7 TLN2 RPS6 ITM2B GLO1 PI4KA RASGRF2 C1ORF56 PCDH8 RPS19BP1 VPS35 CADM3 MTATP6P1 ELAVL4 ACTG1 IPCEF1 RSL24D1 CSDE1 THY1 CLIP3 DPYSL2 STMN1 BAD RPH3A CADPS2 ATP2B4 MAP1LC3A SPCS2 COPS8 ATP5E PARM1 YJEFN3 TUBB4A SEZ6L REEP2 CDH22 CD99L2 AP2M1 RPL13 ATP6V1E1 FAM134A ITFG1 ISCU CHL1 KCNC2 DIRAS1 MBOAT7 RAB1A ARF3 SPOCK1 RPL6 HS6ST3 RPL39 CLTC TM2D3 KLC1 TSPYL4 PPP2R2C CERS6 RPL12 RPS27A CPE RCAN2 FTH1 SQLE FSCN1 RPL35 YWHAH PPP2CB CDK17 NAP1L3 PRKAR1B PTMA TMEM130 TUBA1A SLC17A7 OXR1 SYN1 ATP5B APBB1 SULT4A1 BEX1 SYT5 NDRG4 MORF4L1 CPNE8 VGF STX1B MYEOV2 RPL11 DYNC1I1 FABP3 PEA15 SYT4 PLEKHD1 RP11-219A15.1 EPHB6 NSF CFH CMAS PHPT1 UBE2M ADD2 ATP9A KIF21A HMGCR YAE1D1 CX3CL1 HSPE1 FAM3C HEY1 NDUFB8 SNAP91 CLTB HOMER1 CAPNS1 NDUFA8 SKP1 ATP5F1 PPARGC1A PLOD2 HSPA4 ARL6IP5 CLPTM1 VDAC1 SLC25A6 JUND SLC7A1 TMEM141 BLOC1S1 RPS4X MTPN LPPR4 PEBP1 TUBA4A NUP37 NCBP2-AS2 CBX1P1 MTRNR2L1 RASGRP1 POLR2L MAP2K1 NUDT21 VAMP1 PRDX5 CCDC124 ASAP2 ARPC4 TCEAL2 BDNF CHMP5 DCTN3 PRKCE CALN1 CAPZB CTNNA2 NDUFA4L2 ADSS SOX6 ZNF208 CAMKK2 NDUFS5 CHGB FBXL16 SPHKAP ENO1 RPL32 ZNF365 UQCRFS1 SLC38A1 LZTS1 MTCH1 DPP6 DYNLL1 IDI1 SLC8A2 ATP6V1C1 CYFIP2 NDUFA4 KIF1A NR4A1 APLP2 CAMK2N2 CCDC68 C1ORF233 MAGED1 ZFAND5 PPP3R1 GAP43 UBA52 TMEM120A BASP1 KIF3C RPL10A CORO2B DCTN1 TMX4 COX7B EIF1B RPL23A CCDC85B BEX5 MZT2B THSD7A RELN PPP2CA ATP5A1 TERF2IP TPPP PTPN20A NAPA SLC1A2 PDGFRB UCHL1 NDUFB10 CTBP1 SCN1B TUBD1 ATP6V0B PPDPF EPS15 NEUROD2 NCALD MTX3 ANXA7 FKBP1A LSM4 SELT REPS2 TAGLN3 NHP2L1 JAKMIP1 C12ORF49 CSRP2 DMTN LLGL2 LAMP5 TMSB4XP4 NCOA4 SNCA RPS5 ADAM23 TSC22D1 TOX2 NRCAM NDUFB7 CPNE4 TPD52 NRSN2 RASGRF1 MGST3 GPR158 KIAA1045 SYNPR SLC7A8 TBCA SSBP3 PFN2 PGM2L1 RAB40B TENM1 BCAS2 SGCD OPN3 DUSP1 CTNND2 CAMK2G NRN1 LDOC1L SRM MSMO1 TMEM158 SERINC3 TMEM230 FAM149B1 COX8A NDUFB4 CBX6 SMIM13 NDUFA13 MT-ND5 CYCS LIMK1 MDH2 TXN SERPINI1 NHP2 NDUFA2 LAMA2 PSMD8 ATP5I SERPINF1 BAALC ITM2C RPL15 GOT1 PMEPA1 EFR3A NDUFC2 ALDOA MRPL55 RTN4R CEP164P1 CNRIP1 GSK3A AZIN1 PRUNE2 TOLLIP BTBD1 HDLBP BEX2 PNKD GUCY1A3 NDUFV1 OAZ1 FBXW11 NPTX2 VSTM2L EIF1 RAB7A TMEM35 SAP18 OXCT1 ATP5G1 MORF4L2 GDE1 COX7A1 ATP2B2 LDOC1 EDIL3 SPRN ID2 DRAP1 TMEM14A POLR2I ELAVL2 SUMO3 TRMT112 CPLX2 MAP1A ABHD8 UQCRC2 WSB2 HNRNPH2 SDHAF1 BSG NCAM2 NAPB PDP1 USP5 S100A6 LDHB GTF3A RPS26 MT3 PSMD2 LANCL1 RPS2 HMGCS1 UBL5 INSIG1 ISCA1 RFK PPP2R2B VDAC3 NDN CPLX1 CHCHD2 GPX4 SNCG COX7C UBE2V2 SMS UBE2QL1 SNAPC5 PVRL1 SNCB MPP1 RAP1GDS1 CNTNAP5 UBE2N RAB2A PAK1 SPRYD3 PCDH17 ACTR1A SLC6A17 KITLG NFIA PPM1A AP1S1 NEK7 MAP1B GAPDHP33 DNAJC5 COX6B1 NIPA1 DNAJB6 MAGEH1 SRP9 CDC37 GNG2 FGF12 EPHA6 DDAH1 NELL1 SCAMP5 ANO3 GABARAPL2 NELL2 GABRA5 UBC MAPK8IP2 MRFAP1 RRM2B RAP1GAP2 SOD1 PHYHIPL NME1 CALCRL MT-ND1 ARL4C FAM19A2 RPL7 COX7A2L MST1R OLA1 RAPGEF5 RHOA NDUFA12 SSTR1 PTPRN CALB1 NDUFB1 CA11 POMP TRIM36 FLT1 PCMT1 PAM SLC30A3 C9ORF16 KLF2 EFHD2 RANBP1 PFN1 FAM174A RPL18A BSCL2 PSMB3 MTRNR2L6 NDUFA11 NUDT4 ATP6V1G2 MIF PCDHGA5 PCDHGA10 PCDHGA6 GTF2H2C_2\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "cortical layer 2-3 excitatory neuron B" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: CHN1 MT-CO3 MT-CO1 MT-ND4 NECAB1 SNAP25 ENC1 MAP1B RTN4 PPP3CA PRKCB RP11-111M22.2 TBC1D15 CHL1 GRIN1 PGM2L1 STXBP1 GPM6A PRNP NPTN FSCN1 CALM1 SLC22A17 MT-ND3 PPP2R1A ATP2B2 OLFM1 STMN1 SYT1 MT-ND1 MT-ND2 CDC37 PREPL SYN2 DKK3 PRKACB SUB1 APLP1 SYTL2 CHGB DNAJC21 NUAK1 LMO3 HSP90AB1 NHP2 PEX5L LMO4 ATP6V1A OR6D1P SCD5 ASAP1 RPL8 PSAP MTRNR2L12 CLSTN1 OXR1 NUDT4 NRGN NPTX1 CKB THY1 APLP2 MAPRE2 ARPP19 SCN3B CNTN1 NAT8L SERINC1 GHITM TPPP BASP1 ACTG1 PCDHAC1 NUDT21 UCHL1 MT-CYB PKM SV2B VSNL1 MTCH1 ANO3 TPD52 CALM2 MAGEH1 NELL2 TSC22D1 NAPB CLTC MT-CO2 EIF4G2 YWHAG CAP2 MAPK1 PPP2R2C GDI1 MT-ATP6 MAP4 ZFAND5 MRPS7 IDS ZNF385D TPI1 SPCS2 DDAH1 YWHAQ STXBP6 SLC16A11 SLC17A7 MCHR2 FAM84A SNRPN EGR4 SYT4 PAFAH1B2 ATP5B EGFL7 PTK2B CERS6 YIPF1 IGFBP5 ALCAM KLC1 CPE MORF4L1 RNF11 PIK3R1 FAT3 SPARCL1 C18ORF32 GPR26 IMMP1L GAPDH UBA52 CDK5R1 ZMAT2 PSMD12 APP PITHD1 BNIP3 CX3CL1 COX7A2L PCDH19 PRKAR1B NDUFA4 LDB2 ANXA6 RPL12 EGR1 SERPINE2 JUND NDUFA5 PPP3R1 C1ORF95 GNAQ EDIL3 RAB6A C14ORF2 LMBR1 TGOLN2 KIFAP3 SLIT3 COPRS TKT PFN2 ARHGAP35 MPP1 FAM134A YWHAB LZTS1 HEY1 ATP1A1 LAMP5 UBE2QL1 WLS MTRNR2L8 YWHAZ CALM3 CDH8 ATP2A2 SLC7A5 PSMB3 TOMM20 SERPINF1 SCAND1 OR2X1P LMBRD2 NEUROD1 FBXL16 EIF4A2 RRAGA PPP2CB USP5 SNAP91 D4S234E CDK14 PPP1CB PTMA NPTXR NGFRAP1 BSG NEGR1 COX8A COX6B1 FKBP1A ATP6V0B TUBA1A SEPW1 NDUFB2 PDP1 ATP9A MTPN PLD3 SUMO2 ATP5C1 WASL NDFIP1 PHYHIP IPCEF1 PLCB1 RPL37A HK1 SYN1 CAPNS1 NEFM TMSB4X CDK17 CTBP1 ATP2B4 SLC25A11 LYNX1 LDOC1 ZNF365 GRIN2A SLC38A11 CAPZA2 RPL13 EPS15 SYNGR1 SLC30A3 TMEM70 RRM2B NDRG3 CNR1 KCNC2 CAMKK2 PSD3 SULF2 TRIM37 NCAM2 DIRAS1 PRKCE TUSC2 SNX10 AK5 STMN4 MAPK8IP2 VDAC1 SLC24A2 NDFIP2 PSMB5 PTPRN CNTNAP5 BTBD10 GNG2 RAB6B HTR2A CLU AP3S1 ZNF703 GRINA FAM19A2 SYT11 CCDC154 SCN1A REPS2 HCN1 CBX6 BHLHE40 RGS12 CTNNB1 MAPRE3 PEA15 UQCRB YWHAH RAD23B TOLLIP DPYSL2 TUBB4A MAL2 SERPINI1 ARL2BP ATP6AP1 DYNLL1 KCNK1 SPARC C16ORF13 ZBTB18 ETV1 WSB2 FDPSP4 SKP1 ITFG1 GAP43 DPP6 KIF21A NFIA CMAS PCBP1 RPL32 SERINC3 RTN3 OCIAD1 PPP3CB LINC00086 RNASEK-C17ORF49 CFH RP11-20I23.1 MIF BCAS1 SERF2 NSF RP11-219A15.1 ATP6V0C ATP6V1G2\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "cortical layer 2-3 excitatory neuron B" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MT-CO3 RAB3B MT-ND4 MT-CO1 SNAP25 SYT1 RP11-111M22.2 MT-CO2 CALM2 CHN1 CALM1 CCK RTN4 PRNP C14ORF2 ENC1 USMG5 GPM6A TMSB4X NRGN APP GAPDH NECAB1 HSP90AA1 PRKACB MT-ND3 RTN1 YWHAG GRIN2A PTMA STMN2 NGFRAP1 MT-ND4L ZNF385D COX6C PRKCB MT-ATP6 RAB6B YWHAB MAP1B COX5B GNAQ RTN3 SPARCL1 PPP3CA COX4I1 APLP1 SYN2 SV2B NDUFA13 VAMP2 SLC39A10 ATP2B2 OXR1 PREPL SERINC1 TSPYL1 ZNF365 MT-ND2 TUBA1B GAP43 RPL15 MT-ND1 RGS4 COX7C MT-CYB CAP2 STXBP1 ACTB PJA2 RPL3 CPE ALDOA RPL41 PIK3R1 RPL6 CADM2 C4ORF3 NEFM FTH1 NDFIP2 CDK5R1 EIF4A2 BEX1 MTATP6P1 RP11-219A15.1 PSAP ELAVL2 IMMP1L GRIN1 CALM3 CSDE1 SNCA ARF3 TBC1D15 ATP1A1 ARFGAP2 PIN1 HSP90AB1 NDRG4 KIF1A EPS15 RPS28 SLC22A17 TMSB10 NFIA ENO2 NDUFA5 ENSA PDP1 AP2M1 PAM BASP1 RNF11 PKM SNCB VSNL1 BDNF SCAMP5 COX6B1 MAP1LC3B APLP2 TERF2IP UQCR11 ARPP19 CFL1 MAPRE2 PPP3CB LDB2 OAZ1 WBSCR17 C16ORF13 CLSTN1 SULT4A1 RAPGEF5 ZFAND5 PNMAL1 GNB1 LGALS1 CRIP2 RPL21 SLC24A2 UQCRB ATP5I TUBB2A LMBRD2 TMA7 PSD3 NPTXR SCN3B SYN1 SCG2 NEFL ATP2A2 TUBA1A DNAJC21 MZT1 DKK3 TRIM37 HMP19 GSKIP CLTB MTND1P23 PPP1R7 CLU NDFIP1 ATXN10 DCLK1 MLF2 HMGCS1 PNMA2 YWHAZ MRFAP1 PPP2CB SUB1 LMO4 NELL2 ELAVL4 DYNLL1 TPPP GHITM CHMP4B CX3CL1 NUDT4 ATP6V1F ATP9A IDH3A SYT5 MYEOV2 OCIAD1 MAP2K4 ATP1B1 REEP2 PLCB1 RPL36A GABARAPL1 TPT1 SCOC MAOB HIGD1A UBC BEX4 SLC9A6 PFDN4 D4S234E CAB39 CABP1 MAP1A STMN3 CADM3 PEX5L NAP1L3 KLHDC3 KIFAP3 NARS KIF5A GNG3 SEZ6L2 PHYHIP NAP1L2 CAMK4 RAB40B NNAT AP3S1 YWHAH ITFG1 SUMO2 C19ORF70 GDI1 SERPINI1 BRK1 RPL38 GUCY1B3 AP2S1 TRMT112 EZH2 SLC17A7 GMFB MDH1 C1D SLIT1 SNX10 TAGLN3 MTRNR2L1 DCTN1 ATP5J2 RABAC1 TBCA FKBP1A NUAK1 MAST3 SRP9 LMO3 ASAP1 NPTX1 GTF2H2C_2 RAB3C HS6ST3 SLITRK1 CLTC RAB11A CREG2 CDH13 NEGR1 WASF1 UCHL1 ACTG1 NDUFV1 SYT11 SLC35B1 DPP6 PRDX2 FTL EIF1 ALDOC NPTN MMP24-AS1 SKP1 EFR3A PPP1R9B RAB6A GOT1 KIF21A ATP5B CA11 OR6D1P FGF12 RPL31 PPDPF VDAC1 MARCKS GPX3 TESPA1 RPL11 NDUFB2 AK5 GDA TMEM14A SPOCK1 NDUFA4 HNRNPA1P40 BIRC5 TF RNASEK-C17ORF49 PLEKHD1 PPIA B3GALT2 ERBB4 ATP1A3 LAMA2 FIS1 B3GNT1 PPIH EIF4G2 DMTN INPP5F IQSEC1 FAM84B SYT13 TMEM132D GABRA1 RAB2A C12ORF49 ARPC5L CAPZB WSB2 NDUFB1 JAKMIP1 GRAMD3 MRPL15 ETFB LINC00087 ATP6AP2 PSMC5 ATP5J MRPL55 PCMT1 MIEN1 MYL6B LANCL1 TANC1 NUP37 PDE1A RPL26 UBE2V2 MORF4L2 SLC30A3 C1ORF64 TMEM230 SLC1A3 PTGER3 MTRNR2L8 SYNPR SLC1A2 EIF1AX ZBTB18 BANF1 CTXN1 HDLBP ATP5G1 SLC8A2 NRCAM SEPW1 RP11-20I23.1 SCD5 UBB LIG1 OLA1 NMNAT2 LPPR4 PPP1CB NAPA LDHB ARF5 BRICD5 NELL1 PGD PACSIN1 SYNGR1 IGSF21 TSC22D1 ITM2B CDKN2D FAM131B COL11A1 MTPN TBC1D7 ATP5C1 RAP2A VSTM2L PEBP1 WBP11 TMEM160 POLR3H ANXA6 CCT5 MAGED2 ATP6V1B2 UBL5 GPR158 FAM3C LHFP TRAPPC1 COX7A2L RAB11FIP5 PFN2 CD63 NWD2 ATP6V1E1 IPCEF1 GPR116 RPS2 ATP6V0E2 PRKCG PPA1 STK39 PITPNA AZIN1 UHMK1 HPCA CLSTN2 RCAN3 TMEM117 IDS VCAN ADD2 TMEM120A C10ORF10 CNR1 TMEM130 TMOD2 YAE1D1 BSG MAP7D2 ACAT2 APEH ARF1 SCAND1 OPA1 NAT8L CIAPIN1 LINGO1 SUMO1 CYFIP2 SLC9A1 TMEM70 SYT10 RHOA PSMC1 RAB3A CDK5R2 SDHAF1 MAPRE3 BAI2 CITED2 TM6SF1 DNAJC5 MOBP GNG2 CLDND1 PCDHGA5 MAPK1 BAALC RASGRF1 RPS4X NCALD EGFL7 ADAM23 RPL12 HEY1 ISCA1 NSF SNX17 COX7A2 CAPZA2 NDUFA11 STMN4 GPX4 RPL23A TUBA4A TEX2 CPLX2 PPP2CA BEX2 ZBBX REEP5 PCYT2 TUBB4A CDK14 NDUFA1 PRDM8 MRPL33 GABARAPL2 PCDH17 ATP6V1G1 PEA15 UQCRH TRIM36 PPP3R1 MYO1B FBXW11 NDUFAF3 SARAF ANLN TXN CCDC124 THOC7 PGK1 NCBP2-AS2 NAPB SH3BGRL2 RPS27A YJEFN3 CTNND2 DYNLT3 ATP5E MDH2 SERF2 C19ORF43 EFHC2 COPE KCNAB2 SNAP91 HINT1 PFDN1 ENOPH1 PGRMC1 ACTR10 GOT2 NHP2L1 PGAM1 SIRPA NOP10 NDUFC2 ALCAM ATP5O MTHFS CNRIP1 GRINA CCDC85B TUBD1 PINK1 KCNC2 NRSN2 OST4 MRPS7 RAP1GDS1 TMEM150C PRKAR1B ESYT1 KCNF1 ACLY STMN1 SLC22A3 NGEF LRRIQ1 RPS5 ZBTB20 CORO2B PTPRN PNMAL2 NCEH1 PPP2R2C KLC1 NDUFB10 PRELID1 CADPS2 INA RPS3A RPL35 NDUFS5 TCEB2 SYT17 AP2B1 FAM163B GPR26 SYNJ1 ARHGDIA CYCS IFI6 RPH3A BAD NEUROD2 VIPR2 COX8A SLC6A1 PSMD2 SYNPO FAIM2 COPS8 LCNL1 EID1 HSPA8 CAMKK2 PPARGC1A ATP6V0C UBA1 RBX1 DNAJC6 HDDC2 ARHGDIG OLFM1 PEF1 GUK1 GRPEL1 TCEB1 PTPRN2 C12ORF57 DNM3 CNIH3 CERS6 UQCR10 MT-ND5 SLC38A1 PET100 TPD52 KCNC3 FSCN1 CISD1 VPS35 SOD1 TIMP2 RORB DGUOK CBLN4 TMEM59L RASGRF2 ETS2 YWHAQ LAGE3 ACP1 GPR150 HTR2A RPL39 DYNLRB1 MTRNR2L12 LYNX1 AC244489.1 RPL17-C18ORF32 MTRNR2L6 RPL17 BSCL2 MIF ATP6V1G2 CYB5R3 CFH SYTL2\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "cortical layer 2-3 excitatory neuron B" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: SNAP25 RTN3 GPM6A ATP1B1 NRGN RPS27A MT-CO3 EFR3A MT-CO1 PRNP CHL1 PTMA ARPP19 MT-ND1 PNMAL2 RPL3 ATP2A2 ZFAND5 DPP6 PEBP1 RPL31 NAPA GNG2 TOMM20 MT-ND4 PPP3CA ENC1 TSPYL1 SYT1 CLTB CHN1 PREPL ARFGAP2 TUBA1B NDFIP1 SLC24A2 NPTN MTRNR2L1 RAB6B NEUROD6 CSDE1 MAL2 PKM CCK IPCEF1 AP3S1 PSMC3 SPTBN1 GABARAPL1 YWHAZ TOMM22 GNAQ RP11-195F19.5 SCN1A USP5 ANAPC11 ATP1A3 PRKAR1B OLFM1 NECAB1 VAMP2 CTNNB1 DNER PRKACB CALM2 RAB3B SELT RPS15 ATP5G2 SYTL2 FKBP1A STXBP1 PPP3R1 REEP5 MCHR2 ARL6IP1 SV2B THY1 ANAPC13 CPLX2 SLC38A11 NRN1 PSMC1 CDKN2AIPNL EIF4G2 SCAMP5 STXBP6 UQCR11 USMG5 APLP2 PDP1 PSAP BIRC5 PPP2CA OAT ATP5I ACTB PLCB1 PEG10 SLC35B1 TCEAL5 RPL32 ATP6V1G1 RTN4 MAP2K1 CNTNAP5 ARL8A SERPINE2 AP2S1 ATP5J2 CDK5R1 TGOLN2 RAPGEF5 PHYHIPL GRINA SYNGR1 CDK14 PEA15 SLC7A1 PTK2B RTN1 PJA2 ATP2B2 VSNL1 YWHAQ FXYD7 MT-CO2 HSP90AB1 MLF2 YWHAB LMO4 NBL1 ATP1A1 SNRPN NAPB EIF1AX SNN APLP1 CD59 MTRNR2L6 IDS GTF2H2C_2 DNAJC21 TBC1D15 TF\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "cortical layer 2-3 excitatory neuron B" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: RAB3B SNAP25 RP11-111M22.2 MT-CO1 RPL31 CALM2 VSNL1 MT-ND2 CHN1 RPL37A ENC1 RPL36A CALM1 SYT1 IDS PPP3CA COX6C ZNF385D SYTL2 APP BEX1 CLU PRKCB NGEF RTN4 RPS26 CCK NRGN GPM6A ARPP19 RTN1 FXYD6 TMA7 NDFIP2 NRCAM RPL13A HNRNPA1P40 PTCHD4 PET100 RPL35 HINT1 OAT PGK1 AK5 TMSB4X SCD5 STMN3 PRKACB NELL2 ATP2A2 FTH1 RPS12 TMEM130 TOMM20 OLFM1 SYT11 NGFRAP1 RPS27A CREG2 MT-ND4 RPL23A TESPA1 COX4I1 COX7C HSP90AB1 TF BIRC5 NR1I3 NDUFS5 KIF21A CLTC PSD3 CERS6 MED10 OR6D1P DPP6 ATP5B RPL7 RPL11 SLC39A10 CNR1 CD99L2 BAI2 SERP2 RPL39 CRIP2 OXR1 ASAP1 TUBA1A PRNP ERH CKB RAB40B MORF4L2 RTN3 PCGF1 ENO2 NPTXR HMGCR KCNAB2 RPL32 NPTX1 PNMA2 PKM UBC FAT3 LGI3 COL24A1 EPHB6 CCDC85B H2AFZ SPCS2 SCAMP5 KLC1 COQ10B RBX1 CALM3 SNRPN YWHAH RNF11 SEZ6L2 PIK3R1 DCLK1 GNAQ SYNJ1 CABP1 TUBB4A MAP1B ATP6V1E1 GRIN2A RAN HOPX PDP1 CYFIP2 MT-CO3 RPL41 MAP1LC3B ACTB FAM19A2 MRPL52 MT-CO2 PHYHIP SLC12A5 SPARCL1 REEP5 RPS15 ALCAM PSAP SERPINE2 SERINC1 SLC35B1 TOMM7 RGS12 NMNAT2 THY1 NCEH1 ZMAT2 PFDN1 MT-ND1 PRKAR1A AZIN1 TRMT112 C2ORF74 SKP1 PEBP1 PGRMC1 ATP1A1 NGRN MTATP6P1 MT-ATP6 NSF ARFGAP2 RP11-219A15.1 SUMO2 POLR2M PDE1C TAGLN3 COL5A3 PIN1 HOMER1 TSPAN7 KIF3C RAB6B C14ORF2 DYNLL1 RHOA PITPNA TMEM160 ATP5O C14ORF132 PSMC5 DDN UBE2V2 SEZ6L TSPYL1 FKBP1A COX7A2L DIRAS2 HMGCS1 OPCML MT-ND3 MDH1 NPTX2 NRF1 GUCY1B3 WASF1 CAMKK2 GRIN1 BEX5 FAM96B ATP5J RELL2 YWHAZ ZCCHC12 LAMP5 RP11-404G16.2 ZNF365 DKK3 PI4KA PJA2 CYBB ATXN10 DYNLRB1 PVRL1 ARF3 AP2M1 CYP1B1 MAPK8IP2 TRAPPC1 SCN3B FAM149A COX6A1 PPP2R2B PCBP1 RHOB RP11-705C15.2 RRM2B ACTR1A HTR2A TERF2IP ATP5G1 PPP3CB ENO1 PREPL PRDX1 VAMP2 RPL10A C1ORF52 LANCL1 KITLG FAIM2 LINC00087 TMSB10 TM2D3 GUK1 SLC38A1 FKBP8 RGS4 SLC25A22 ARL6IP1 PSMC3 PSMB7 UQCR11 NDUFB10 CNTNAP5 PIP4K2A NEFL SHC4 C2ORF80 INPP5F ATP5J2 UCHL1 SPRYD3 NDRG4 KRAS TCEAL5 PCDHGA10 UQCRB CDH6 NNAT PPP2CA MAPK1 NDUFA12 CACNG3 PPIA YWHAG CAMK2D SOD1 ITFG1 GSK3A NAP1L3 NECAB1 OPA1 JAKMIP1 WDR47 MANBAL ALG3 WBSCR17 SPOCK2 SNX3 BNIP3 CDK5R1 APBB1 ITM2C SARAF CADM2 MAP2K1 GUCY1A3 ISCA1 WBP2 RAMP1 MPZL3 ARL6IP5 CPLX1 HSP90AA1 RAB3A ATP1A2 CYCS NHP2L1 ITPR2 ATP6V0B LDOC1 PTPRS TPRG1L SLC9A3R1 RPS28 TMX4 TUBB3 PLCB1 PRDX5 FAM174A ACLY CDH13 SIRPA COX8A ACTG1 ABCG2 C1ORF233 KCNV1 YWHAQ SRM YDJC ATP6AP2 DNAJC5 NAPB LMO4 KLHL5 MSMO1 FGF12 SYN2 RHBDD2 RRAGA PNMAL1 SLC22A17 PTMA ATP5G3 GAPDH SERPINI1 D4S234E ANO3 RAB4A PFN2 RPL13P5 NDFIP1 EID1 HMGB1P8 MPPED1 DPY30 PRKCE ARHGAP35 NEXN PCMT1 FAM3C ARHGDIG C19ORF10 WARS UQCRQ COX5B TUBA1B ACOT7 CHIT1 ATP6AP1 LZTS1 MTRNR2L1 SLC17A7 GPR171 ATP5F1 YJEFN3 EPB41L3 MRAS FTL NDUFA4 WASL EIF4A2 REPS2 PSMD12 LDB2 SGCD ATP5C1 LDHB DNAJA1 NDUFB2 OCIAD1 NUAK1 MAP7D1 RAPGEF5 PINK1 SERPINF1 STXBP6 KCNC2 FAM134A NDUFB8 TUBB4B HSPE1 MAP1LC3A KIAA1045 PAK1 SUMO1 HSPA8 CDK17 APLP2 RSL24D1 CNP BASP1 CA4 VDAC3 VSTM2L ADD2 SERF2 PRKAR1B SRP14 PSMA7 RPL38 RPL3 PDE1A MB21D2 RPL18A AP1S1 TMEM14A NBL1 SCOC KIT PACSIN1 RPL26 ADAM23 MYL6 RAB2A CBLN4 FSCN1 ATP6V1F MFN2 PHB GNG2 MT-ND4L NEFM MTRNR2L6 RPL17 RPL17-C18ORF32 PTGDS MBOAT7 AC244489.1\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "cortical layer 2-3 excitatory neuron B" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: SNAP25 SYT1 CALM1 CHN1 MT-CO1 RTN4 MAP1B CLU MT-CO3 RTN1 ARPP19 PPP3CA CCK PRNP GPM6A PSAP RTN3 THY1 CALM2 BASP1 APLP1 NELL2 YWHAH ATP2A2 SLC17A7 VSNL1 TMSB10 NRGN STXBP1 ENC1 MT-CO2 ATP1B1 NDFIP2 C4ORF3 HSP90AA1 CABP1 OLFM1 VAMP2 ATP1A1 CADM2 APP CDK5R1 FAIM2 RGS4 NSF PSD3 DIRAS2 TSC22D1 ALCAM SEPW1 UBE2QL1 HSP90AB1 MT-ND4 PDP1 FTH1 SLC22A17 CARTPT GDI1 ATP1A3 CPE CALM3 PIK3R1 NCEH1 TMSB4X ARF3 RPL35 SERINC3 PREPL MTRNR2L1 TSPYL1 STMN2 NFE2L1 WASF1 KIF21A CA11 LMBRD2 VSTM2L TSPAN7 OXR1 EIF4A2 SLC12A5 GAPDH CKB ATP6AP2 RHEB PKM SCAMP5 SLC24A2 TPD52 CAMK2G TBR1 NAPB ITM2B PRKACB HMP19 GHITM ATP2B2 ZNF385D RAB3B DYNLL1 PGAM1 BEX1 NDUFB2 CREG2 PEBP1 PLD3 YWHAG WBSCR17 NEFL TMX4 CADM3 NAP1L2 ATP5J2 H2AFZ ATP5E ATXN10 TOMM20 HOMER1 DCTN1 NDUFV1 B3GNT1 PCMT1 IDS GRIN1 ATP5B RAB3C MTPN PSMC5 DIRAS1 NPTXR KIF1A UCHL1 CNTN1 EIF1 MTRNR2L12 NDRG4 SPARCL1 SERPINF1 TPI1 TUBB2A SARAF RPS2 DYNC1I1 TMEM59L FTL PGM2L1 CORO2B GOT1 ZBTB18 RAN COX6A1 TUBA1A GUK1 COX4I1 ACTG1 SERINC1 NCALD STMN1 LPPR4 SOD1 FAM3C NAP1L3 AP1S1 CLSTN1 RPL15 PGK1 ALDOA TRIM37 SYNPR VGF NEFM MRFAP1 NCDN MAP2K4 LAMTOR2 GDA ATP6V1C1 DYNLL2 DKK3 TCEAL3 ETS2 SIRPA SPRN PPP2R1A SYNJ1 PNMA2 BRK1 SNCA PRKCG YWHAB GRIN2A ACLY RPL17-C18ORF32 ZMAT2 SUMO2 SYN1 COX8A VPS35 NECAB1 GABRA1 ATP6V1A KCNAB2 MT-ND3 PLCB1 MBP RAB1A HEY1 SERF2 MSMO1 C7ORF50 ATP6V1B2 STMN4 SH3GL2 SKP1 EGR3 ATP6V0E2 PFKP DNAJB6 CAPZB SYT13 PPP2R2B MAPRE2 PRKAR1B ATP2B4 ARL6IP5 AP2B1 ENO2 RPL13 MAL2 NME1 CPNE8 CAMK4 LMO4 ATP6V1G1 UBA52 TKT RAP2A HSPB8 SLC8A2 UQCRC1 SLC39A10 BAALC TUBA1B GPX4 HOPX GLRA3 IQSEC1 PTPN20A PGRMC1 ARL6IP1 SULT4A1 RLIM NDUFB8 SYT5 ZFAND5 DCLK1 C18ORF32 INA PPIA TOMM7 SYN2 SERPINI1 C11ORF31 RPL21 SEMA3C MAST3 TUBB4A JAKMIP1 AP2M1 ACTB RPL8 RRM2B BSG MAP1A NDFIP1 RPL11 SCD5 SLC38A1 DNAJB9 RPS15 SUSD4 SV2B GABARAPL1 UQCR11 VDAC3 REEP5 MT-ND2 NIPA1 SNAP91 CEND1 SYT11 CAB39 TGOLN2 KLHL12 CNR1 ATP6AP1 CAPZA2 MT-ND1 SSBP3 RPL41 NUDT4 NDUFA2 HSPA8 CA10 CFL1 ARMC3 MRPS7 CD99L2 FABP3 VDAC1 PSMC3 DYNLRB1 YWHAQ DPP6 ATP6V0C ARL8B CTBP1 UQCRFS1 CBX6 RANBP1 HINT1 COPRS MT3 GPR6 SPTBN1 FAM134A NMNAT2 NDUFA13 TRAPPC1 EXTL2 GUCY1B3 TCEAL5 SH3BGRL3 DMTN PPP3R1 NDUFA8 SNX10 BAG4 MAGEH1 GPCPD1 RPH3A PSMD8 BNIP3 NDUFB7 RPL37A SQLE ATP5G3 HCN1 RASGRF1 PIN1 PCDH19 DNAH11 PRKCB TPRG1L PI4KA CHRDL1 MANBAL SYNPO RPL23A PAM CTNND2 MRPL33 MYL12B CTSD MAOB RAB6A POLR2L AURKAIP1 RAB11A EDF1 TMEM35 RPS12 ATP5A1 RAPGEF5 TMEM132D CLIP3 CYSTM1 CHCHD2 IDH3A ENOPH1 COX7A2 RP11-20I23.1 FGF12 CYP1B1 VEGFA PPDPF IGFBP5 PIP5K1B JUND CCDC85B SNX3 ITM2C NELL1 CDC37 ATPAF1 C1ORF115 GABARAPL2 TM2D3 WSB2 NRCAM TMEM158 FSCN1 BEX4 TMA7 PEX5L VDAC2 NUAK1 OR2X1P MYRIP LANCL1 NAT8L C14ORF2 NGRN CMAS FAM84A SRP14 LIMK1 WBP2 RGS12 SMAP2 ATP6V1F MFN2 EID1 THOC7 ISCU MGST3 NRN1 SMS NDUFB4 MTCH1 PJA2 RAB37 DGAT2 UBQLN2 UBE2D2 EPHB6 AK5 FXYD7 DPYSL2 OPA1 NCBP2-AS2 PAX8 CX3CL1 SAP18 MZT2B CNGB1 PPP3CB PCSK1N APLP2 IDI1 ARPC5L PAK1 TPT1 COX7B PEA15 PPP2CA YIPF3 SPRYD3 NNAT OPCML CYCS USMG5 SEZ6L COX6B1 NPTN TMEM160 SNRPN NAPA TEX2 RPL32 ACTR10 HSPA4 PELI3 PTPRZ1 FXYD6 FAM131B TMEM155 MAP4 RAB2A MAGED2 PRSS3 CYC1 GNB1 IGSF21 RAP1GAP2 FIGN B3GALT2 C1D NDUFA4 C20ORF24 APBB1 RBX1 SLC30A3 UQCRB EIF1B PTMA GLDN ARHGDIA RPL18A PDE1A RASGRP1 CTNNA2 HPCA KLC1 CD59 KIF3C HN1 JUN PRUNE2 TIGD4 CKLF CDK14 CLTC PPA1 MOBP TCEB1 PPIF ATRN PVRL1 COPS8 MT-ATP6 SLC25A4 KIF5A EIF1AX RNF11 ARF5 CDH8 UROS RPL3 PNKD ATP5G1 OST4 STRAP TPPP RP11-632C17__A.1 SEZ6L2 PNMA1 HMGCS1 NPTX1 LDB2 CRIP2 SCN3B TBCB PSMA7 KIFAP3 GLO1 OAZ1 ADSS COX7C TESPA1 CACNA1H ADAM23 DDAH1 TXN RAB11FIP5 CDK17 CHP1 CDK5R2 RHBDD2 UBE2L6 SYNGR3 ATP9A ANO3 GPR98 RPL10A FILIP1L RAB6B FKBP8 KCNC2 PRKCE GPR56 TCEAL7 FABP5 CNRIP1 RNF181 MPC2 NCAM2 ANXA7 SMIM13 ENSA C12ORF49 C11ORF84 MFSD6 PTPRN SERP2 BEX2 HMGCR STMN3 OLA1 LINGO1 ACOT7 GDE1 TUBD1 HSPA2 SERPINE2 RAB7A NDUFA5 NEGR1 FIS1 SH3RF1 SUMO3 KCNMB4 RPL38 EFR3A C14ORF132 TCEB2 CPLX1 PRDX5 LMO3 NDUFB10 SLIT1 PHYHIP AES SNCB BHLHE40 CAP2 CYFIP2 RAB27B RRAGA FASN FKBP1A CADPS2 CLPTM1 KRT17P6 MAPK1 ATP5I COX5B HS6ST3 DUSP6 TERF2IP KRAS PNMAL2 GRINA MAP2K1 NGEF MRPS21 LGALS1 CHL1 MTRNR2L6 HBA2 TUBB3 FRMPD2 APOLD1 GABARAP NUDT21 RPL7 HBA1 PVALB RNASEK-C17ORF49 BSCL2 CTC-575D19.1 RPL36A ATP6V1G2 MIF PCDHA4 PCDHA9 PCDHAC1 PCDHA10 CFH\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "cortical layer 4 excitatory neuron" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MT-CO1 MT-ND4 MT-CO3 OLFM1 DPYSL2 SNAP25 SERINC3 RORB SYT1 VSNL1 TMEM35 MT-ATP6 CCK THY1 RPL37A STXBP1 SLC24A2 CLSTN1 DKK3 NPTX2 PREPL SCN1A MT-CYB SERINC1 MTRNR2L1 SLC9A6 HSP90AB1 NPTN PPP3CA RGS4 PSMC3 GNG3 CALM2 CALM1 IDS SCN1B NRGN BEX4 CHCHD2 BEX1 KCNH5 LINGO1 CBLN4 ARF3 PCDH19 CCDC183 IPCEF1 TUBB4A NEFM PSMD12 C11ORF31 ATP6V1E1 GPM6A SARAF RTN4 ITFG1 ITM2A PSAP ATXN10 SNCA AZIN1 RTN3 CAMK2G ELAVL2 HOMER1 BSG NECAB1 MT-ND4L SRP9 GTF3A CDK5R1 NPTX1 SERPINI1 ZNF365 GABARAPL2 ALDOC JUND CFL1 ATP6V0B USMG5 GABRA1 TMEM155 TUBA1B ZFAND5 FARSA CHN1 MORF4L1 NAT8L NUDT21 SNCG GUCY1B3 HMGCR LMO3 NUAK1 SLC1A2 TENM1 RHOA MT-ND2 LANCL1 BCAP31 CMAS RPS27A FKBP8 CEND1 FTH1 MORF4L2 DAB2 PPP2R1A LYNX1 PGK1 BAG4 HN1 PID1 SIRPA SLC17A7 SNCB EIF1B NFE2L1 MTCH1 GSKIP PRKACB FAM3C OPA1 VIPR2 UQCRH BASP1 ATP1A1 PPP2R2C CDC42SE2 KCNC3 CYCS SELT FBXL16 UBE2E3 FAM134A VDAC3 CTNNA2 DSTN SLC6A1 FAM19A2 TMSB10 NDUFA4 GABRG1 PPIA COL6A1 SKP1 RAP2C CDH22 RAB3IP PIK3R1 SNAP91 CLTC CD24 TUBA4A SYN2 DCLK1 C6ORF1 STMN2 HPCA TM2D3 SPARCL1 NGFRAP1 COX6C COX5A SPRYD3 KCNF1 CADM3 KLC2 PPDPF FAM43B C19ORF53 ANO3 HOPX DYNLRB1 CHMP4B MAP1A SV2B ACTB RP11-20I23.1 ALDOA MTRNR2L6 TBC1D15 ATP6V0C DNAJC21 HNRNPA1P40 RAB3B ZNF385D SYTL2 ESCO2 PCDHGA6 PCDHGA5 PCDHGA10\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "cortical layer 4 excitatory neuron" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: SYT1 NAPB PRKCB RPL26 RTN3 FAIM2 IPCEF1 SNAP25 ARL6IP1 DPYSL2 FTH1 PRNP TRIM37 YWHAB OLFM1 RPS26 CABP1 STXBP1 PAM REEP2 PHPT1 C11ORF31 GNAQ ANKRD20A11P PSD3 MAPRE2 KIF1A ZFAND5 COX4I1 LMO4 CALM1 RPL31 RPL37A TSC22D1 ATP5O CALM2 PFDN1 ATP2A2 OPCML SYTL2 GABRA1 NR1I3 NAP1L2 RPL38 PRKAR1B MT-ND3 KCNA2 COX7C CCDC158 MTRNR2L12 TEX40 FOXP2 RPL10A SPOCK1 CACNB1 NARS NRCAM MZT2B YWHAQ ALDOC PREPL MAP1B PLD3 SYNPO RPL23A MT-CYB GPR150 LINC00087 MTCH1 ATP1B1 ARL4C VAMP2 SRP14 RAB6A SHARPIN NDFIP1 EIF4A2 PFN2 CREG2 SRD5A1 SYNPR CACNG3 STX1A COX7A1 SYN2 MT-CO2 PARM1 PMEPA1 C3ORF80 TSPYL1 SNCA EXTL2 FBXW11 COL6A1 ANXA7 SLC8A2 PDP1 SLC12A5 CEND1 SNRPN TKT PDE1A TMEM59L NR4A1 CERS6 TBCB DMTN ARF1 IFT52 CYB5R3 SEZ6 ATP6AP2 CAP2 NDUFV1 NAT8L NGFRAP1 ARF3 PPP1R9B NKIRAS1 TPRG1L TSPAN7 SYT13 DCTN1 ARHGDIA ACTB RPL13 ATP2B2 STMN1 TPPP SCN3B SPARCL1 SLC9A6 NDRG4 NREP HSP90AB1 PRKACB MT-ND2 GUCY1B3 APEX2 KLHDC3 CFH SCOC PCDH17 PLCB1 NUAK1 ATP5G3 IMMP1L NPTX1 INPP5F TCEB2 PCMT1 ZBTB18 RPS2 NCALD SLC24A2 ATP1A1 KCNK1 RNF11 RTN1 ATP6V1G1 NPTXR NEGR1 RAP1GDS1 SLC38A1 ARL8A LMO3 HTR1F ITM2B RPL32 TAGLN3 OR6D1P CSDE1 MTRNR2L8 RSL24D1 CLU TBR1 ATP5I SYT11 KCNC2 SERP2 UCHL1 CLTC CAMKK2 PIK3R1 HMP19 PPP3CA RPS28 MAP2K1 MTX3 BIRC5 UQCRC2 TMEM141 TMSB10 SLC17A7 TLE4 RAPGEF5 PLEKHD1 NSF SERF2 RNASEK-C17ORF49 IDS TF\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "cortical layer 4 excitatory neuron" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: SNAP25 ATP1B1 CALM2 SYTL2 MT-CO2 MAP1B MT-ND4 TRHDE MT-CO1 TUBA1B SYT1 TBC1D15 CAMK2G FXYD6 CHN1 SLC24A2 RTN4 CALM1 DCLK1 GTF2H2C_2 RPL26 GPM6A GAPDH ATP5J2 OLFM1 DPYSL2 CIAPIN1 YWHAG FAM127A CPE SCN3B SLC25A4 EIF4A2 NPTX1 STMN2 GAP43 PRKCB MT-CO3 HTR2C ARL6IP1 PCP4 RTN3 RP11-111M22.2 NRGN ZNF385D KIF5A RANBP1 CADM2 TCEA2 CDH8 SH3GL2 IDS FSTL5 YWHAZ TPT1 RPL31 KIF1A GDI1 ATP2C2 MAP2K2 MAP4 MT-ND5 PPP3CA ATP6V0E2 EPHB6 MORF4L1 UQCR10 SPHKAP TMEM35 HMP19 NDUFB4 ATP2A2 ABHD8 ENO2 KLC1 DPY19L1 MT-ND3 TSPYL1 BCL11B SARAF SPTBN1 PKM MORF4L2 MT-CYB PLCB1 MYBPHL FAIM2 IPCEF1 COL9A1 PPIA RPL13 ELAVL4 MAPK8IP2 NDFIP2 ARF5 PRKACB PLAUR RAB6B MAP2K1 TPI1 RPL15 TMEM14A BASP1 NUAK1 IMMP1L RSPO4 SULT4A1 PIK3R1 IQSEC1 CAB39 NRCAM PFKP TUBB2A CYP26B1 TMTC1 RPL21 TLE4 TPPP GTF3A ATP6V0C ALDOA RP11-20I23.1 NR1I3 ARFGAP2 PNKD UCHL1 KANK3 SCN1B TSPYL4 PAM GRIN2A NDUFS5 ATP6V1A ATP9A PRNP THY1 CCDC85B SLC1A2 CKB OR6D1P HRK PGM2L1 VAMP2 APLP2 CAMK2D ATP5I SERPINI1 ARL4C SERINC1 PSMC3 NAA38 CLU SMIM13 NECAB1 RPS6 MS4A4A C1ORF115 RPL7 VSNL1 UQCR11 PIP4K2A EIF1AX NPTXR MT-ND2 DDN LMBR1 PGRMC1 TMEM155 TPGS2 NOV ITM2B D4S234E SUMO1 PTPRT TUBA1A MTX3 SEMA3A BRK1 TSPAN7 NEFL GABARAPL1 CALM3 NAP1L3 ESYT1 TMOD2 UBA1 PPP3R1 DLC1 APLP1 RAP1GDS1 GABARAPL2 USMG5 PTGES3 UBA52 MRPL55 FAM89A YWHAH NDUFB5 MTRNR2L1 YBX3 CDK5R2 BSG RNF11 TMEM160 EIF4G2 VWA2 FKBP1A GRM3 DCC RPS2 SEPW1 MT-ND1 PTMA ACOT7 REEP2 OAZ1 NGFRAP1 SLC25A6 OAT CPLX2 ZNF385A CCDC183 PDCD5 RPS28 STX1B ACTB CA11 PAQR9 NGRN ATP5E MAGED1 NDRG4 COX7B CCK RHBDD2 KCNAB2 ECM1 UBB MRAS COPRS NRIP3 CPNE2 PPP2R4 CDC37 SNCB SEZ6L ERBB3 LDB2 MRPL33 UHMK1 TCEB2 NAP1L5 COX8A LAGE3 PDLIM1 PTCHD4 SLC22A17 NAPB BEX1 PAK1 PPP2CA DYNLL2 SLC12A5 RLIM DAB2 ANXA6 C19ORF70 MTRNR2L12 CAMKK2 ATP5C1 PFN1 SLC38A1 DDX3YP1 OPCML UBE2V2 GPR158 MAPRE3 SLC7A5 TERF2IP TUBB3 LRP1B PEBP1 PFKFB4 SLIT3 RPL37A ACTG1 CABP1 WDR78 SCOC C18ORF21 C16ORF93 ITPR2 NDUFB10 CLSTN2 DCAF12L2 NCEH1 SYN2 FXYD7 JUND ETV1 MT-ND4L EPS15 COL11A1 KCNMB4 PEA15 KIF21A VPS35 LYNX1 RAB1A PTPRS NDUFC1 SPARCL1 UBC PPP2CB ATP1A1 AGA RTN1 THOC7 CNTN1 SNCA BCKDHB ONECUT1 BSN PPM1A CLDND2 PRUNE2 OPA1 PCSK1N TRPC3 PDP1 MAGED2 ALCAM OCIAD1 SSBP3 NDUFA5 ATP6AP2 IKBKE PI4KA PRKCG HSP90AB1 SCN2B RPS27A ZCCHC12 KLHL5 CXXC4 YJEFN3 SRP14 CALCRL SIGIRR STX1A MT-ATP6 COX5B ACP1 PPA1 PEG10 SV2B ATP5A1 ZBTB18 LANCL1 PSAP TMSB10 RGS12 EFR3A CREG2 COX7C ITM2C GSTO1 NDUFA4 MDH1 CACNG3 SLC39A10 TENM1 GRINA APP SKP1 CTNND2 HK1 OST4 C12ORF49 MTCH1 SH3RF1 DYNLL1 AKAP12 PPP1CB INPP5F PRKAR1B RPS3A MRPS28 MTRNR2L6 ETFB NDUFA13 C11ORF31 BSCL2 RPL13A IFITM1 IFITM3 TMEM191A RPL17 AC244489.1 RPL17-C18ORF32 RAB3B\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "cortical layer 4 excitatory neuron" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: RAB3B MT-CO3 SNAP25 DNAJC21 MAP1B SYT1 NREP MT-CO1 TMSB4X GRIN1 CALM1 THY1 MT-ND4 GAPDH MT-CO2 LMO4 RTN3 TSPYL1 SLC6A17 ATP1B1 RP11-111M22.2 LRP1B AES SLC39A10 SLC17A7 PSAP VAMP2 STXBP6 SNCA PKM JUND MT-ND2 OLFM1 HNRNPA1P40 HMGCS1 PRNP AK5 DPYSL2 ATP6V0D1 ACTG1 SYN1 ADAM23 TMEM59L RSL24D1 FKBP1A RPS3A SPTBN1 MT-CYB BASP1 C14ORF132 PREPL BTNL9 RAB2A CADM2 PNKP SNAP91 RTN4 MT-ATP6 RPL26 SEPW1 CALM2 MAP1A PTPRS RHBDD2 CAPZB TSPAN7 COL6A1 TUBB2A GDI1 ITFG1 ARPP19 CTXN1 YWHAZ CHN1 C16ORF13 COX5B STMN2 SPOCK2 ENO2 RPL37A FAIM2 CD99L2 KIF21A UQCRH PGAM1 PSD3 NDUFB10 HDLBP TMEM144 NDUFA4 FTL ATP6V1A RPL38 PGRMC1 PPP3CB SERF2 COL5A3 CDH13 CSDE1 TUBA1B TRIM37 TOMM7 CAMK2G AP2B1 NCAM2 DNAJB6 POLR2L HOMER1 EPS15 PIN1 SEMA4G GUK1 ZBBX ATP2A2 TEX2 GABARAPL2 ZMAT2 TMEM141 RAB3A SCN1A RPS6 RTN1 OXR1 ACTR10 C6ORF1 RPL13A TUBA4A ATRN DHCR24 KIFAP3 EIF1B FAM84A BEX1 PLP1 CLSTN1 PIK3R1 LMO3 DNAJB9 IQSEC1 GFRA2 KCNV1 GMFB TTN NDUFV1 VDAC1 GABRA1 MT-ND1 CLPTM1 ALCAM DYNLL1 COX4I1 HSPB3 PRKCB ATP5J2 FAT3 GABRQ CHGB CRYAB RPS15 RGS4 NDRG4 SLC30A3 SLC12A5 HSPA8 TMEM130 YWHAG TPPP NDUFA11 NDUFB1 NDUFB4 FKBP8 ENC1 COX7A2L CNTNAP5 ZBTB20 CPNE4 NRN1 SERINC3 REEP5 MLLT11 AZIN1 MAPRE3 PDYN ACTB C11ORF31 TRHDE YAF2 SERINC1 STXBP1 GPR133 STMN3 RAB11A H2AFZ PITHD1 PDP1 LPPR4 PCDH8 PTPRN FGF12 HRH3 RAN MFSD6 FTH1 RP11-115A14.1 KCNC2 GPM6A PRDM8 SLC9A6 PTK2B HOPX SUSD4 RPL41 ARL8B NDFIP1 RNF182 APBB1 INSIG1 EPHB6 PEBP1 ASAP2 RPL31 CPE PFKFB4 SMAP2 CYC1 CCK RAP2A TMEM14A SOD1 SCOC RPS10 RCAN2 RELL2 FKBP4 ELMO1 PI4KA GPR171 STX1B SYT13 DCC PTMA BSG C2ORF80 CLSTN2 PPP2CA IDI1 YJEFN3 ARL6IP1 PGK1 MT-ND3 PGM2L1 GPR56 STMN1 MTATP6P1 STPG2 C1ORF115 OLA1 OAT NDUFA1 RNF11 NAA38 CDK5R2 SERPINI1 LDB2 CBX6 PINK1 SYNGR1 CLTC VSNL1 SCN2B SYT11 C1ORF95 ELAVL4 CNTN1 ELAVL2 APP ITM2B NRCAM RABAC1 NDUFC1 DNAJC5 ARHGAP24 RPL8 GUCY1B3 SLC22A17 CYCS ZFAND5 SCN3B NRGN RPS5 SUB1 HSP90AB1 MARCKS RPL6 GRM3 NFE2L1 NECAB1 PRKCE S100A10 CHL1 SARAF KIF5A UQCRQ TSC22D1 SH3GL2 ARL6IP5 UQCRC2 SYT4 CLU VDAC2 BEX2 LRRIQ1 TBCB HK1 PTHLH PTPRVP FAM198B C19ORF53 DCLK1 ETV5 SEC61G UBC RIIAD1 FAM43B PTCHD4 EPB41L3 THYN1 SCAND1 USMG5 AP2M1 TOLLIP GCHFR RPL17-C18ORF32 RNASEK-C17ORF49 PPP3R1 FABP5 IDS NGRN RPL17 NSF RP11-219A15.1 AC244489.1 RPL36A ATP6V1G2 SYTL2 ZNF385D\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "cortical layer 4 excitatory neuron" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MTRNR2L1 MTRNR2L12 MT-CO3 MT-CO1 SNAP25 MT-ND2 MT-ND1 MT-ND3 MT-ATP6 CHN1 MT-ND4 CADM2 MTRNR2L6 MAP1B PTMA MT-CO2 NPTXR RPH3A LMO4 RTN4 NEUROD6 OLFM1 COL6A1 SPOCK1 SYT1 MTATP6P1 RTN1 TSHZ2 MT-CYB PLEKHD1 SNAP91 USMG5 CALM2 GHITM ARL6IP5 PREPL CYC1 IDS ZNF365 TUBB4B RAB3B TSPYL4 ATP6V1F RPL32 RPL7 SNCA PLCXD2 SUMO2 MRPL12 DKK3 TMEM150C CHL1 ATP1A3 ITM2C INPP5F CTBP1 ATP1A1 FASN TMA7 PRKACB B3GALT2 TUBD1 NGFRAP1 ATP2B2 LAMTOR1 PTCHD4 GABRG1 ATP6V0E2 BAG4 SYT5 CAP2 RGS4 ATP5O NPTN KCNAB1 ATP1B1 STOX1 RPL35 RPS12 PGM2L1 TMX4 CREG2 FGF12 ELAVL2 PJA2 CACNA2D2 OPA1 ARPP19 NIPA1 EFR3A OXR1 SV2B CNR1 DYNLL2 HOMER1 RP11-111M22.2 ERH CABP1 SCN1B CLEC2L SCAMP5 ARL8B TSPYL1 OPN3 FAM163B SERPINI1 PCDHA9 APOD KCNK1 EIF4G2 CALM1 OR6D1P ADD2 NPTX1 CADM3 VSNL1 COX6C RAB6B VAMP2 CLTC HTR2A NRGN BASP1 SYTL2 NDUFA1 VGF BEX4 RASL11B ATPAF1 ATP6V1E1 SERINC3 DCLK1 ATP6AP2 SEC61G RTN4R VEGFA CD53 ATP5G1 CHMP5 PRNP FKBP1A SEZ6 C1ORF52 DPP6 WBP2 PSD3 GDI1 CTNND2 EIF4A2 MTRNR2L8 NUAK1 REEP5 ATP9A RPL3 RP11-20I23.1 ATP6V0C ATP6V1G2 LMBR1 PCDHGA6 PCDHGA5 PCDHGA10 HNRNPA1P40 TBC1D15\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "cortical layer 4 excitatory neuron" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: RP11-111M22.2 SNAP25 IDS PGAM1 CHN1 RAB3B SYTL2 CCK MARCKS MT-CO1 SIRPA PRKCB CALM2 RPL31 SYT1 MANBAL TSPYL4 MAP1B SLC17A7 TOMM20 SCG2 SLC12A5 RORB SERF2 CD63 ATP6V1A PRNP ARPP19 PGRMC1 PPP3CA RPL38 CHL1 SERINC3 NDRG4 TSPYL1 GNAQ TSPAN7 PPP2CB RPL13A NPTX1 GHITM ENO2 PSD3 CRH SARAF KLC1 NDUFB2 SNCA RAB11A BAG4 RPL17 CAPZA2 PKM RPS15 PDP1 SERINC1 SEZ6L2 THY1 PSAP HSP90AA1 MORF4L1 RHOB ARHGAP29 SPARCL1 PPP3R1 TUBD1 RNF11 PRDX3 NTNG2 SCAMP5 NCEH1 CDK5R2 PEPD NRCAM COMMD6 PCSK1 MFSD6 TOMM22 CNTN1 VDAC1 CPE ZFAND5 RPL13 MOBP CCT5 MAGED1 NDUFA5 ACTB RHBDD2 RAP1GDS1 CAMK2G KCNMB4 CLMN RPL32 SLITRK1 CADM3 BASP1 MAP1LC3A SPOCK2 LANCL1 PLD3 POLR2I TPD52 TMEM151A TOX UQCRC2 RFK TMEM120A C6ORF1 PEG10 FAM131B SUB1 PPP3CB FASN ZBTB18 RPS3A TMSB10 NAP1L3 HCN1 LDB2 TCEB2 DNAJB6 TFEC TM2D3 TBCA RPS5 ADD2 EIF4A2 SYN2 MYL6B TCEAL7 BEX4 OCIAD1 ACTG1 TMEM59L RPS6 SOD1 CDHR1 RPL10A COL5A2 ATP2B2 ENC1 GPM6A RPL37A NUAK1 AP2S1 CPLX1 SLIT1 FAIM2 BIRC5 SLC24A2 CLIP3 FAM127A SERPINI1 DNAJC6 PGM2L1 FAM163B RPL26 PTMA RPL15 ATP6AP2 YWHAG NRGN REEP2 ARPC5L SNRPE MTATP6P1 PODXL TMEM35 STMN3 PRKAR1B OLFM1 CPLX2 DPYSL2 NREP SYNGR1 SLC8A2 CTNND2 PFN2 SNRPN SYT4 GDI1 DPP6 PET100 MT-ATP6 HOMER1 CCDC69 LINGO1 RANBP1 MT-ND2 KRAS PEF1 SLC6A17 APP TMEM14A MIR6723 PSMD12 EEF1A2 IQCK CRYM RAP2C SCD5 MT-CO3 STX1A PEX5L BSG BANF1 ATP1B1 DSTN COPS8 FAM219A C1ORF52 OPA1 STXBP1 USMG5 ENO1 TUBA1A CADM2 UBA1 ACTR1A SPP1 EPS15 MED31 SNCB ANO3 CHGB PTPRN MZT1 PJA2 RPS28 YWHAZ DCLK1 NAT8L NPTXR DKK3 WBP2 LMO4 PIK3R1 MSMO1 SCN4B PITHD1 CCDC68 CLIP2 SLC25A5 VAMP2 RAB3IP RAB6B NCBP2-AS2 ARL1 RPS27A TMOD2 IPCEF1 CLTA KLHL5 BAI2 OLA1 CALM1 HEY1 SEPW1 TOMM7 COX7C D4S234E MAPK1 BSCL2 NSF RPS12 AC244489.1 ATP6V1G2 TUBB\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "cortical layer 4 excitatory neuron" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MTRNR2L1 MT-CO3 MT-CO1 MTRNR2L12 MT-ND5 SNAP25 MT-ND4 MT-ND1 MT-ND3 MTRNR2L6 TNNT2 RTN4 TUBA1B CREB5 YWHAG SERINC1 MT-ND2 PJA2 MT-CO2 NECAB1 MYL6 PPP3CA GPM6A LINC01296 SSBP3 PRKACB CLIP3 KIF21A CALM2 PGM2L1 BASP1 KLC1 KIF1A RPL26 SYT1 SULF2 ELAVL2 RANBP1 MAP1B ETS2 ZBTB18 MTRNR2L8 CNTN1 SCN1A NPTN TPT1 BIRC3 BEX4 PEA15 CXXC4 MAPK1 NUTF2 RPL13 IDS TEX2 OPRM1 UBE2N PTMA SARAF NDRG3 OPCML KLF10 FAM127A CFH CNTNAP3 NPTX1 NDUFB7 PPP2R1A RNF11 DNER OPA1 CLTC GUK1 NARS PPP2R2C RTN3 COX7C DIRAS2 NGFRAP1 PDP1 TFEC NPTXR SYN2 GUCY1B3 NEUROD6 AK5 PAFAH1B2 RAP1GDS1 IPCEF1 LPPR4 LRRC69 RPS12 ATP6V1C1 SSTR2 EPHB6 ARFGAP2 RPL7 RPL3 RP11-219A15.1 PCDHGA6 PCDHGA5 PCDHGA10\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "cortical layer 4 excitatory neuron" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MT-CO1 MTRNR2L1 MTRNR2L12 MT-CO2 MT-ND1 MT-ND4 MT-CO3 SNAP25 IPCEF1 RP11-111M22.2 MTRNR2L8 MTRNR2L6 MT-ND2 RAB3B SYTL2 ZNF385D PTMA PPP1CB DCLK1 MAP1B NRCAM TUBA1B UCHL1 NEFM ATP6V0B MT-ATP6 SYT1 MT-CYB YWHAG SLC22A17 BIRC5 CFH TBC1D15 SLC39A10 CYP26B1 ACTB KIF21A GRIN1 GSTP1 RPL8 ACTG1 FAM219A INPP5F NRGN APLP1 MT-ND3 OPCML VGF EGFL7 SSBP3 CALM1 CABP1 HMP19 COX4I1 MAPRE2 NDUFB10 RLIM SYN2 MTPN HMGCS1 PSMD2 MTATP6P1 RPL6 ARHGAP29 STMN2 MT-ND4L PIK3R1 TAGLN3 CIAPIN1 RELN RAP2A GABRA1 MPPED1 WDR47 TERF2IP GABRG1 PRNP PPA1 SIRPA SLC38A1 BLVRB CLSTN1 OLFM1 NDUFAF2 PPP3CA RNF11 SLC24A2 RTN1 SPOCK1 TSHZ2 STRAP PCSK1 RHOJ CALM2 CSRP2 ELAVL4 MAP4 GOLIM4 EGR1 SUB1 TMEM144 LAMTOR5 PFN2 LPPR4 RTN3 SLIT1 AHNAK2 NCEH1 FBXO40 STX1A FGF12 ARF1 RELB BEX1 SEPW1 SERINC3 RPS28 GTF2H2C_2 RP11-219A15.1\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "cortical layer 4 excitatory neuron" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MT-CO1 MT-CO3 RAB3B MT-ND4 PPP3CA MT-ND1 SNAP25 MT-ATP6 CHN1 ZNF385D ANKRD20A11P MTRNR2L12 RAB4A GRIN1 PSAP HSP90AA1 RPL39 MTRNR2L8 MT-CO2 PRNP RP11-111M22.2 PIK3R1 MT-CYB ACTB MT-ND3 RORB CAP2 STXBP1 MT-ND2 TBC1D15 GTF2H2C_2 ARFGAP2 BIRC5 PAM ANO3 TSHZ2 YWHAB PPIH ABHD8 ABHD14A RTN4 NPTN COMMD6 SOD1 YDJC PLD3 SSBP3 ARL1 EPS15 RAB3IP SULF2 ATP6V1C1 SCN1B KLC1 RTN3 MAP4 SNRPN FKBP1B MRFAP1 CALM2 RPL31 NAP1L2 OLFM1 RAP2A SLC38A1 PTGES3 SPOCK1 CAMK2G SULT4A1 MAPK8IP2 DYNC1I1 CADM3 WSB2 RPS27A MAP1B NELL1 PSMC1 GDI1 SCOC KCNA2 SCN1A CPLX2 AHNAK2 FAM131B NFE2L1 GFRA2 MTND1P23 KCNAB3 SV2B ATP2B2 OPCML CHL1 SLC6A17 LMBRD2 SLC17A7 PTPRT PFN2 CEND1 SEZ6 STMN1 TMOD2 SYT1 DPY19L1 SLC39A10 NDUFA12 ARF1 ARL6IP1 HMP19 CALM1 MTCH1 BEX2 DNAJC6 UQCRH ARF3 DPYSL2 NAP1L3 CTBP1 UQCR10 SLC30A3 PRKACB CLTC SLC24A2 UQCRB NPTXR BNIP3 PGM5 AES GABRG1 PTMA ELMO1 REPS2 ARPP19 MTRNR2L1 APP KCNK1 RPS15 WASF1 NCDN BSN MT3 FAIM2 GNAQ TUBA1B PEBP1 RPH3A ACTG1 IDS ELAVL2 PHYHIP HNRNPA1P40 NSF RPL17-C18ORF32 C18ORF32 RPS10 RPL15 NGRN MTRNR2L6 LMBR1 SYTL2\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "cortical layer 4 excitatory neuron" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: SYTL2 SYT1 MTRNR2L12 MT-CO1 SNAP25 CHN1 HSP90AB1 CALM1 MTRNR2L1 RTN1 MT-ND1 NDUFB1 MT-ND4 PGRMC1 KCNMB4 NPTX1 ARL6IP1 SYN2 ADAM23 MCHR2 RPL21 PRNP SPTBN1 FBXW11 GRIN1 SPCS2 COA4 NDFIP1 PRKCB MAPK1 LPPR4 SPARCL1 COBLL1 MT-ND2 PSAP MAP1B RPL37A RPL32 CKB PTCHD4 PCDHA4 PLEKHD1 ARL6IP5 REEP2 RAB3C SYT5 CABP1 RPL13 PPP2R2B MT-ATP6 RPS26 GPR26 TCEAL5 ANXA6 ATP1B1 CNTNAP5 SYN1 ATP6V1G1 DIRAS2 PLCXD3 HCN1 TUBA1A IPCEF1 MRPL47 SYNGR1 GPM6A HTR1F SERINC1 CXXC4 ATP2B2 TMA7 PPP3CB NAP1L2 DUSP6 COL12A1 PPP3CA CLSTN2 ALDH1A1 LAMA4 SCN1A SPRYD3 ACTG1 ATXN10 C14ORF132 SEPW1 RORB POMP PRKAR1B ACTR10 RAB40B PIP4K2A NUAK1 PRDM8 NDUFC2 ATP5J2 PCDHGA5 ATP5A1 GADD45GIP1 SYT4 YWHAH PPIA NGFRAP1 MTCH1 TMEM130 ARPP19 TOMM20 UCHL1 TMSB4X PSMC3 KIFAP3 ATP5B TCEB2 COL22A1 CCK BEX4 MT-ND3 PDCD5 NDFIP2 RPL26 PPARGC1A ATP5E SLC1A2 LINC01296 NELL2 NCAM2 SPOCK1 CTXN1 ENC1 YWHAB EIF1 MAP2K4 IDS OLFM1 GNAQ FKBP1B SCD5 SLC12A5 TOMM7 SLC9A6 FAIM2 NDRG3 BSN EGR3 LMO4 UBA52 SLC22A17 RAB11FIP5 TAGLN3 NRGN QDPR DPP6 NFIA ENO2 PSMC1 ATP6V0B CALM2 ASIC4 GSTO1 CA2 BASP1 RPH3A NAPB CAP2 AKAP12 ATP5C1 MORN2 RPL35 RGS4 CDK5R1 RPL17 KLF10 IQSEC1 GUCY1B3 UBE2N CTC-425K20.1 CPE SPOCK2 SULT4A1 PLCXD2 OR6D1P SLC17A7 CSDE1 KIF21A NREP CREB5 MT-CO3 ARFGAP2 RELN RPS10 NSF C18ORF32 RPL17-C18ORF32 ARF5 RPL13A RAB3B\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "cortical layer 4 excitatory neuron" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: SNAP25 SYT1 MAP1B ACTB BASP1 TSPYL1 CADM2 ATP1B1 RTN3 PRNP PREPL RPL11 OLFM1 RTN4 SPARCL1 CALM1 HSP90AA1 ATP6V1B2 ATP2B2 RPL37A PIK3R1 AP2B1 CALM2 FOXP2 STX1B RPL17-C18ORF32 VAMP2 PJA2 TOMM20 PRKACB TSPAN7 IPCEF1 SLC39A10 UBC KIFAP3 ARL6IP1 ZNF365 SYT4 RPS27A SARAF MT-ND1 SYN1 PPP3CA ITFG1 CDK5R1 PFN2 CPLX2 PEX5L NDFIP1 DPYSL2 IDS ESCO2 ACTG1 TOX MGST3 UQCRQ DNER AKR1E2 RPL26 CLIP2 AP2M1 DYNLL2 SEZ6L2 TBR1 PKM NGFRAP1 APP MYRIP SNX10 GAPDH CMAS ARL8B RAP2A GABARAPL1 HSP90AB1 ENO1 NRCAM NAT8L SPTBN1 CLU UQCRB PPP3CB ATP5J SULT4A1 MTRNR2L12 MTRNR2L1 MKX EIF4A2 THOC7 PRUNE2 ENO2 MT-CO2 WBSCR17 PNMAL2 RPL8 YWHAB MTX3 HTR4 SSTR2 ELAVL2 SEC61G CALM3 CTNND2 VSTM2A BAG4 KITLG CDK14 FGF12 AZIN1 DCTN1 YWHAH TPD52 RPL38 KCNMB4 RPS6 APBB1 SGCZ PSD3 NECAB1 B3GNT1 SLC12A5 DRAP1 MORF4L1 TOLLIP PPP1CB CEND1 FAIM2 RASGRP1 VSNL1 CLTA MYL6B FBXL16 PEG10 PVRL1 MDH1 STMN2 NDUFA4 MTRNR2L8 DUSP1 TUBB2A OAT CXXC4 SELT RAB3C MARCKS MAPRE2 PGM2L1 GLIPR1 POMP SLC30A3 NDN PNMAL1 SCAMP5 CHN1 MAST3 ATP9A LRP1B RPS28 RXFP1 TUBA1B RAB7A BAALC CSDE1 MORF4L2 PLCXD3 SLC7A1 PSMA7 PRKCB RNF181 MTPN RAN QDPR PNMA1 TRIM37 CADPS2 SERINC3 ATP6AP2 NDRG4 OPA1 YWHAQ FXYD6 CBX6 PAFAH1B2 XX-CR54.1 MAP7D2 PPP2R1A TMSB10 TMA7 ARPC4 ACTR1A RNF11 FAT3 RP11-111M22.2 FSTL5 LYSMD2 APLP1 NCAM2 D4S234E RAP2C SH3GL2 ENC1 SEPW1 COX7C GUCY1A3 TRAPPC1 TIMP2 SNAP91 PDE1A PELI2 TMEM59L NDUFB4 PDCD5 CAMK2D NGRN RPL13A ARFGAP2 CFH RPL36A RPL6 TUBB GTF2H2C_2 PCDHAC1 PCDHA4 PCDHA10 PCDHA9 ZNF385D SYTL2 RAB3B TBC1D15\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "cortical layer 4 excitatory neuron" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MT-CO1 CHN1 MT-CO3 SNAP25 CLSTN1 RAB3B RPL38 SYT1 RPL7 PPP3CA HNRNPA1P40 NR1I3 NDUFA13 PPP2R2C SLC9A6 CRIP2 MT-ATP6 PCDH17 NKIRAS1 STX1A NDRG3 MT-ND4 OCIAD1 HMP19 SCAMP5 RPL21 CNTN1 STXBP1 GABRG1 RP11-111M22.2 NELL2 RPL37A TOMM7 SYN2 TSPAN7 RPS15 HSP90AB1 PAFAH1B2 GRM3 VAMP2 TMEM59L CABP1 KIF1A HTR2A NRGN COX7A2 SLC39A10 NECAB1 GPM6A SERPINE2 BCAT1 NAPB TALDO1 GDI1 TMSB10 PCBP1 GUCY1B3 KIFAP3 CTBP1 PTCHD4 CAP2 MBP KCNA1 RPL10A CITED2 TSPYL1 RPL11 ITM2A NPTN ABHD8 IPCEF1 THY1 EXTL2 ARL6IP1 MFN2 C9ORF16 GABARAPL2 MED10 YWHAQ BCAP31 SH3GL2 CADM3 CAMK2D RPL32 SERINC1 TSC22D1 PLCXD3 RPL39 ATP5G3 YWHAZ TUBD1 MZT2B CREG2 MAP1B FAM163B CTNNA3 GPR26 GHITM STMN2 RPS27A SYT5 CD99L2 OR6D1P PRNP SCN3B RBX1 EFHD2 RPS4X CCK RPS28 MORF4L1 FXYD6 ZBTB18 PINK1 UBL5 MT2A TM2D3 FTH1 PTMA PDP1 MT-ND4L MTG1 CRIM1 CACNG3 BIRC5 LMO4 BSG ARPP19 OAZ1 UCHL1 AZIN1 CDH8 TSPYL4 TERF2IP SV2B HSD17B14 FXYD7 AP2M1 SLC30A3 RPL3 ATP2A2 INPP5F MTATP6P1 FGF12 SYT13 RPL17 RPL41 MT3 ADAM23 PRKCB CAMKK2 CDS1 PSAP CNIH3 NDUFS5 SERF2 ATOX1 HINT1 SLC25A6 PKM TOMM70A NEGR1 BEX1 SLC7A1 AP1S2 RPL13A PSMD12 CALM2 IDS RP11-219A15.1 PGAM1 MIF\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "cortical layer 4 excitatory neuron" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: RAB3B ITM2B GDI1 PPP3CA SELT CCK RTN3 RP11-111M22.2 ZNF385D BIRC5 SYT1 STMN1 TMSB10 ATP1A3 FXYD6 SYT4 SERPINI1 MT-CO1 NAPB BDNF CYFIP2 SYT11 SNAP25 LMO4 NPTXR CKB CLSTN2 SERINC1 CALM2 FAIM2 SARAF CHN1 MT-ND4 IQSEC1 PRNP EIF4G2 SLC39A10 ATP1B1 SLC9A6 TGOLN2 FGF12 TSPAN7 NPTX1 SERINC3 LINGO1 DYNC1I1 VGF MORF4L2 CALM1 PEX5L HSP90AA1 NDUFA4 COL12A1 SLC22A17 NFE2L1 FTH1 MT-CO3 GPM6A NECAB1 ZFAND5 MT-CO2 RNF181 ATP1A1 ATP6V1A TSHZ2 NR1I3 CYB5R3 ESCO2 CNR1 ARL8B PACSIN1 GRIN1 YWHAG NDN ENSA PPP2CA GOLIM4 IPCEF1 PCDHB10 LAP3 NAP1L2 PKM RTN1 ARL6IP1 DYNLT3 TUBA1B RNASEK-C17ORF49 ATP6V1B2 STXBP1 RASGRF1 SCD5 COA4 SPON1 EIF1AX ALCAM TSPO RPL35 ZBTB18 ACTB REPS2 STX1A PCDH17 OR6D1P MFN2 RPS15 CX3CL1 TMSB4X AP2S1 LINC00086 RLIM PIP4K2A NELL2 C11ORF31 MRAS STK24 RPL32 MAP1A PPP1R9B ATP9A HMGCR PRKAR1B APBB1 COX5A LGALS1 MPPED1 CTNNB1 ATP6AP1 CCDC115 HSP90AB1 CADM2 RCAN2 ZBTB39 ATP6V1E2 PPP1CB GRINA CAPZB PLSCR1 ARHGDIG KRAS CREG2 DMTN BEX2 CPE RPL26 ASAP1 PRDX1 MAP1LC3A DPYSL2 CRIM1 TMEM120A MAPRE2 PDZD11 DMKN MAP2K1 RAB11A ATP5E CHL1 MMP24-AS1 GPNMB SCN1B COPRS CADM3 UQCRH PITPNA RPL41 WBP2 EIF5A2 PRKCE VSNL1 NREP PPP2CB STMN3 COL5A2 TOMM7 TMEM14A C2ORF74 H2AFZ TSPYL4 CEND1 TM2D3 GMFB SLIT1 NOV NPTX2 NUAK1 SPOCK1 NDFIP1 SCG2 NGFRAP1 PVRL2 OLA1 KLHL12 GLDN HMGCS1 SCN3B PGK1 NDFIP2 ATP2B2 EDF1 PDE1A ELAVL4 TBR1 DNAJC5 PRDX2 SNCA SYNPO RPS27A ARF3 CCT5 SULT4A1 CLU KIFAP3 CRYM CHMP4B MOBP ATP6V0E2 PREPL SCN2B TERF2IP COA3 NCALD FNDC4 SIRPA TMEM59L PSMC1 CRH MTCH1 HES1 ATG101 COX4I1 RTN4 ATP6V1C1 PSAP EIF4A2 DCLK1 IDS RPL18A NGRN NSF SERF2 SYTL2\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "cortical layer 4 excitatory neuron" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MT-CO3 MT-CO1 MT-ND4 MT-CO2 SYT1 CALM1 SNAP25 TMSB4X MT-ATP6 CALM2 MT-ND2 MAP1B CHN1 MT-ND1 MT-CYB FAIM2 ATP1B1 NECAB1 RTN1 ATP6V1B2 PPP3CA RTN3 BASP1 ACTB SNCA HSP90AB1 CALM3 STMN2 MT-ND3 TUBA1B CDK5R1 MTRNR2L1 PSD3 TMSB10 SEPW1 PPIA YWHAG ATP2B2 YWHAB LMO4 PJA2 CADM2 CFL1 ITM2B FTH1 GAPDH CPE RTN4 KIF1A NRGN PPP2R1A SLC12A5 SULT4A1 PRNP PNMA2 ARL6IP1 YWHAH ENO2 EIF1AX VAMP2 TSC22D1 ATP6AP2 PSAP PTMA NDFIP1 NDRG4 CLSTN1 RAB6B PIK3R1 FAT3 BSN SYTL2 TSPAN7 OLFM1 NAPB PTPRT MTATP6P1 EPHB6 WDR47 APLP2 TRHDE YWHAZ PHYHIP SERPINI1 SLC17A7 GRIN2A UCHL1 RORB OXR1 CDK14 GHITM SPARCL1 RHBDD2 KLC1 TUBB2A PPP2CA CKB GABRA1 ARF3 EIF4A2 SNX10 HSP90AA1 IDS ACTG1 APP GPM6A PDP1 NELL2 AES APLP1 ZFAND5 NEGR1 NDUFV1 PFN2 NEFL MAPRE3 PGAM1 MORF4L1 NSF NGRN MTRNR2L6 MTRNR2L12 SERINC1 TUBB4A MZT2B PRKAR1B INA CDS1 STMN1 PRKACB ASAP1 DNAJB6 CHL1 PREPL FXYD6 ATP2A2 TMEM130 SLC22A17 SYNGR1 TUBB EDF1 JUND HMP19 DPYSL2 TPI1 RPS15 CA11 WBSCR17 THY1 NUDT4 HS6ST3 ATP6V1E1 ANXA7 RPH3A SNCB BCAT1 TOMM20 EDIL3 NHP2L1 DPY19L1 SLC24A2 ATP1A3 NAP1L3 NEUROD6 PRKCB MLLT11 MT-ND5 MDH1 SLIT1 GDI1 OAZ1 TCEAL5 RPL41 CTSD CCDC85B HPRT1 CAMKK2 PPP2CB ATP9A SUMO2 LMO3 RGS4 MAPK1 KIF21A SERINC3 CLU GPR26 NDUFB8 CAMK2D VDAC1 PPP3R1 SNRPN ARFGAP2 ATP6V0C TUBB3 RP11-20I23.1 COX5B SLC25A22 NUDT21 CTNND2 RAB4A RASGRF1 BCAP31 PEG10 ZBTB18 CCK RAPGEF5 C1ORF233 TERF2IP DYNLT3 TUSC2 UQCRH DYNC1I1 RPS27A BAI2 ARPP19 DIRAS1 CHMP4B PACSIN1 CNTNAP5 PCBP1 UBE2N SV2B SLC38A1 ENO1 VSNL1 KCNAB2 PCDH19 AURKAIP1 PRKCE TSPYL1 RP11-219A15.1 RFK GNB1 DNAJA1 DIRAS2 RPS28 PCSK1N VWC2L BNIP3 STXBP1 CLSTN2 ADRA1D RPL11 CABP1 SLC9A6 PRUNE2 COX7C SLC6A17 SYNJ1 KIF5A PLCB1 FAM163B TOMM7 VPS35 KLHDC3 TAGLN3 CNTN1 ENC1 FKBP8 UQCRQ RAB3A NGFRAP1 NCOA4 MARCKSL1 CDK5R2 PLCH1 OCIAD1 TBCA FAM134A INPP5F EPB41L3 AP2B1 AK5 SYN1 PFN1 TUBA1A WBP2 SLC1A2 UBE2E3 UBQLN2 CNIH3 CD63 SKP1 COX17 ETS2 ASPDH ADCYAP1 SYT11 RPL37A SYNPO ARL8A MAP4 LDB2 COX4I1 ATP5B RNF11 DYNLL2 PCSK1 PFDN1 NBL1 PPP1CB HMGCS1 PAFAH1B2 C3ORF80 EIF1 SOD1 MRPS21 ATP6V1G1 ATP1A1 RCAN2 HNRNPH2 AP1S1 ELAVL2 NDUFB11 RABAC1 FAM127A PRDM8 PGK1 CLTC PEA15 NPTN TOLLIP KLF10 OPCML DNAJC5 CSDE1 TSPYL4 DNAJC21 BSCL2 MTND1P23 C4ORF3 MRPL55 ALDOC GPX3 AZIN1 MIEN1 TRMT112 PTK2B RHEB CYSTM1 TESPA1 GNG3 ACP1 UQCRFS1 ATP6V0B MMD NDUFC2 DYNLL1 NRSN2 SUB1 COX6A1 RPL31 SERPINE2 ETFB IDH3A EXTL2 RPL35 COBLL1 NCDN PPP3CB YWHAQ TCEB1 CREG2 SUCLA2 DNM3 CACNG3 ATP6V1G2 NDUFA5 EIF4G2 IDI1 ELAVL4 SCN1B SLC39A10 C19ORF43 HEY1 KCNK1 SPOCK1 OLFM2 NAP1L2 PCMT1 CERS6 CBX6 TUBA4A NDUFA13 RPL13 CA10 AKAP12 SDCBP RAB3C CAP2 CAPNS1 CD24 LYNX1 VDAC2 RHOA ALDOA CHCHD2 MGST3 ETV5 ARF1 GPX1 AP2M1 RPL8 MORF4L2 KCNMB4 BSG NTN4 CCDC68 OPA1 GUK1 LINC00087 RSL24D1 CADM3 LMBR1 PLCXD3 UBC BHLHE40 CPLX2 NCAM2 TOMM34 PEBP1 WASL PITHD1 GPR158 ANXA6 PPM1A ELMO1 BCAS2 PIP4K2A C1ORF115 TRIM37 COX5A TRAPPC1 IGSF21 ENOPH1 APBB1 PSMD2 EPS15 FRMPD2 BCKDHB YJEFN3 TMEM35 SYNGR3 ENSA HCN2 C6ORF1 CHGB CCDC124 AMIGO2 ITFG1 HPCA SYT4 WSB2 NGEF ATP6AP1 SEMA5A SCD5 FBXL16 RLIM RPL38 RASGRP1 KIF3C SYT13 DPY30 HOPX DYNLRB1 NEFM NUAK1 FTL RAB7A CHMP5 GOLIM4 LINC00086 CTBP1 CTU2 SIRPA ARL4C DCLK1 SPHKAP F8 RP11-1016B18.1 PVRL1 CIAPIN1 GSKIP SCN2B MAGED1 COPS7A HIGD1A RANBP1 EGFL7 PITPNA ARL2BP LMBRD2 OAT NEUROD2 SMYD2 TXN SCN4B HTR2A KRAS SUSD4 KCNH5 CLTA MAPRE2 MAPK8IP2 VEGFA ARHGAP35 MAL2 EFHD2 EFR3A TBCB RPL3 SNAP91 RAB6A PCGF1 SMIM13 SYNPR TGOLN2 COTL1 STUB1 LSM4 KCNV1 RAP1GAP2 RNASEK-C17ORF49 TMSB4XP4 CYCS TMEM150C PGD PHB BEX5 UBB HMGCR CAB39 CORT LDOC1L UROD BAD GRIN1 ARL1 KIFAP3 GABRA5 MED10 GRM3 DNAJC6 GAP43 GNAQ RHOB UBE2M SULF1 ARL6IP5 YDJC MTRNR2L8 NDUFA12 OR6D1P ATP5H SCN3B PGM2L1 SNX3 NDUFAF3 UTRN HINT1 BCKDK UBE2V2 CETN2 PTPRN2 TRIB2 MARCKS SSBP3 LGI3 DHCR24 CAPZB ACOT7 STX1A ZNF536 SYN2 ITM2C BEX1 SEZ6L CAPZA2 PLD3 MAP2K1 CYFIP2 RRM2B NDFIP2 DCTN1 STRAP COL6A1 GNG2 MAP1LC3A SELM RPS10 ISCU RP11-195F19.5 FAM84A PCDH8 NTNG1 POLR3H UQCR10 REEP5 NAT8L PSMC5 CDKN2D PHKG1 SLC7A1 TPD52 HK1 SCN1A LDOC1 UBL5 MAST3 MAP1LC3B NDUFB4 DKK3 NRCAM COPS8 SPOCK2 UBA1 SPCS2 NPAS3 SLC39A3 COX6C SLC25A11 GLIPR1 NDRG3 RELL2 SCG2 UBL4A RAB11A DGUOK RPL15 CLIP3 SAMM50 APEH STX1B HSPA8 BRK1 GABARAP RPS12 PSMB3 RPL13A MIF RPL18A AC244489.1 RPL17 RPL17-C18ORF32 PCDHGA5 PCDHGA10 PCDHGA6 PCDHA9 PCDHA4 PCDHAC1 PCDHA10 TBC1D15 PLEKHD1 NR1I3 RAB3B\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "cortical layer 4 excitatory neuron" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: SNAP25 MT-CO3 RAB3B RP11-111M22.2 PSAP RTN3 CREG2 CHN1 MT-CO1 CALM2 SYT1 MT-ND1 MAP1B DNAJC21 GPM6A NDFIP2 CCK CAP2 ATP1B1 RORB SCN1A NRGN MT-ND4 YWHAB CNTN1 TSPAN7 PREPL OCIAD1 YWHAZ LMO4 CYFIP2 NELL2 ENO2 SERINC3 STMN2 PTMA FXYD6 CTNND2 SIRPA PJA2 CADM2 RPL41 RAB6B OLFM1 OXR1 NPTN PTCHD4 SNCA GNB1 ARPP19 PRNP MTRNR2L1 NPTXR RTN1 ITM2B UQCRH SPARCL1 KLC1 GNAQ RTN4 MT-ND3 TRHDE NAP1L3 EIF4A2 ARF5 REEP5 PHYHIP PCDHA4 FBXW11 COX6B1 ATP6V1B2 PEBP1 BSCL2 PGM2L1 SLC9A6 APP SLC22A17 PPP3CA RPL7 GNG3 ARHGAP35 PLD3 GPR6 TSC22D1 JUND ZCCHC17 SLC17A7 YWHAH SCN3B CLSTN1 ENSA TMSB10 COX7C MAP2K1 RPL10A RHBDD2 RAD23B MT-CO2 NGRN BAG4 SERPINI1 C19ORF70 CPNE8 CALM1 TPI1 DPYSL2 ARL6IP1 AP1S2 GABRA1 SRP14 C19ORF53 RPL13A TUBA1B BSN NDFIP1 MT-ND2 APBB1 ALCAM STXBP1 COX8A CPLX2 CDH24 NDRG4 TLE4 PCMT1 LANCL1 YWHAQ EID1 IDS NEGR1 RBX1 FAT3 PHB NGFRAP1 MAPK1 MTRNR2L6 COL6A1 NDUFB4 SLC30A3 FGF12 GSK3A NSF NUDT4 ARFGAP2 BIRC5 ALDH1A1 RPL37A NFE2L1 B3GNT1 LPPR4 ACSS1 SOD1 PNKD PKM PLCXD3 NRCAM RPS27A ELAVL2 DPY19L1 CDK5R1 GRM3 STMN3 EIF4G2 MTATP6P1 CHP1 AP3S1 SEZ6L C19ORF10 UCHL1 PCBP1 GMFB FAIM2 CPE ACTB OPN3 RABAC1 OR2X1P AZIN1 CAPZA2 NPTX1 FKBP8 IGFBP6 UBC SPRYD3 STX1A LDHB ACLY SH3RF1 EFR3A ATP6AP1 SNAPC5 CORO2B MT-ATP6 KLHDC3 ELMO1 MAST3 RPL11 NCAM2 NR1I3 SEPT4 SARAF ALDOC GADD45GIP1 MYL6B VAMP1 MAGED1 SCOC SYNJ1 ATP2A2 C18ORF21 COA3 MZT1 UROS CBLN1 FJX1 ATP2B2 SH3GL2 NR4A1 MLLT11 SUMO2 NDUFA5 CALM3 SPCS2 TUBA1A KIAA1045 PDP1 CLSTN2 CAMK2D RAB3A DMTN ARL6IP5 YAF2 DSTN KCNA2 PNMAL1 RPS3A MTCH1 NDUFA2 RPS10 TBC1D7 TM2D3 RFK APLP1 EIF1B PSD3 NDN PPARGC1A DDAH1 BEX1 C11ORF31 RPS5 BLOC1S1 ATP6V0B C14ORF2 SKP1 INPP5F TMEM35 SLC39A10 DIRAS2 PINK1 JUN IPCEF1 CBX6 LRMP SYNGR1 CSRP2 EFHD2 BASP1 FNDC4 CD59 PGRMC1 DNAJC5 RP11-195F19.5 KIF3C BCAT1 HMP19 SPRN GAPDH OAZ1 LGALS1 GPX4 RNF11 RPL26 TMX4 COBLL1 TAGLN3 NEFL DUSP2 SNRPN TAC3 BTNL9 ATP5G2 DPP6 ATP1A3 WBP11 SPOCK2 RPL31 SPTBN1 BRK1 RPS15 ENOPH1 PRKACB CRIP2 MARCKS CLTB PRDX5 VDAC1 NCOA4 SNX3 SLC38A1 MTRNR2L12 PRKAR1A GRIN1 IQSEC1 GABARAP NREP VAMP2 ARF1 TXN CADM3 MAP2K4 APLP2 RAN DMKN PITHD1 OPCML NECAB1 FBXL15 C1D LINC01296 ATP6V1E1 DNAJB6 HSP90AA1 PPP2CB REEP2 TSHZ2 BAI2 SHISA8 STMN1 TSPYL1 HINT1 SYN1 FXYD7 TMSB4X ATP6V1A ETS2 CDK14 FIS1 CKB PNMAL2 ALS2CR12 SLIT1 NDUFV1 CHMP5 KCNC2 ATP6V0D1 TEX2 THSD7A PSENEN SCN4B POLR2K GFRA2 RHOB ADD2 BCAP31 FAM134A PPP1R7 SNX10 ATP5E KCNK1 KRAS NDUFB7 GLDN INA KCNC3 DKK3 UQCRB PI4KA CLTA PTPRN ATP6V1G2 MRPL37 KIF5A RPL23A SLC9A1 IFI16 HSP90AB1 RAB27B FLOT2 MRFAP1 VWC2L ATP5B SLC12A5 MORF4L1 SSBP3 SERPINE2 BHLHE40 SUMO1 CABP1 CISD1 EIF1AX GPR98 PGAM1 MORF4L2 PAK1 D4S234E ATP9A RELL2 GABRG1 DYNLL1 CTNNB1 MAP7D1 TCEAL7 PPP3CB CITED2 UQCRC2 MRPL33 NARS PIP4K2A ELAVL4 PEG10 PHPT1 EIF5A2 SLC25A11 SLC8A2 RP11-20I23.1 ALDOA THY1 RNASEK-C17ORF49 ATP6V0C TUBB SYTL2 ZNF385D TBC1D15\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "cortical layer 4 excitatory neuron" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MT-CO1 MT-CO3 MT-ND4 MT-CO2 MT-ATP6 MT-ND2 MT-ND1 MT-CYB MT-ND3 SNAP25 MTRNR2L1 SYT1 MTRNR2L12 CHN1 MAP1B RAB3B MTATP6P1 CALM1 IDS PRNP IPCEF1 SYTL2 ENC1 RTN1 GNAQ RTN4 TMSB10 LMO4 RP11-111M22.2 NPTX1 TMOD2 DPYSL2 PDP1 GPM6A RTN3 PLCB1 FTH1 PRKCB EIF4A2 PPP3CA MT-ND5 APP NAPB YWHAZ SERINC1 ATP1B1 PSD3 RGS4 MTRNR2L6 MTRNR2L8 SLC24A2 OXR1 KLC1 PSAP AP2M1 CABP1 CPE FAIM2 PEX5L ATP2B2 RPL37A TUBA1B PGM2L1 SPOCK1 ETV1 RPS6 CADM2 PREPL ITM2B STMN2 CAMK2D CFH KCNC2 GRIN1 UHMK1 ENSA PIK3R1 HTR1F TSPAN7 NGFRAP1 CAMK2G NRCAM AK5 OAZ1 SNRPN NUDT4 SCN1A CLSTN1 RORB TOMM20 CALM3 SLC17A7 PEA15 DNAJC6 NDRG4 MT-ND4L SEPW1 COX7C YWHAB BIRC5 NECAB1 SV2B GDI1 SCD5 PSMD12 SCN3B BASP1 DYNLL2 SLC22A17 NDUFA4 DCLK1 HMP19 KIF21A PPIA PRKACB TSC22D1 PRDM8 GUCY1B3 PPP2R4 CEND1 CPLX2 TUBB2A RAB3A ZFAND5 PEBP1 CAP2 STXBP1 CHL1 SERPINI1 DKK3 HSP90AB1 NEUROD2 CLTC OPRM1 RPL12 ELAVL4 RPS3A KIF1A VSNL1 GABRA1 SYN2 NEFL SLC30A3 PJA2 ARL6IP5 FAM3C APLP2 FAM19A1 RAPGEF5 MAP2K4 STMN3 SPOCK2 RAB6B MARCKS ELAVL2 WBSCR17 SPTBN1 ATP6V1C1 WDR47 SSBP3 FAT3 RPL13 HNRNPA1P40 TF NR1I3 YWHAH ATP6V1A MAP7D1 RPL23A SCAMP5 CD63 CHMP5 CDS1 GHITM ARL8B DNAJC5 TLE4 COL11A1 NCALD B3GNT1 CISD1 CFL1 B3GALT2 ARPP19 HK1 PTK2B CLU DCC SLC39A10 PRDX1 TPT1 SCN2B GUCY1A3 SYNJ1 KCNC3 SLC25A22 CTNND2 TRABD2A LDB2 LRP1B CLIP3 SKP1 VAMP2 ASAP1 LANCL1 CDC42SE2 ARF1 PDE1C RPL35 WASF1 SLC9A6 PTPRS ACTR6 TSPYL1 NPTN SYT4 CDH8 MAP7D2 PRKCE SH3BGRL2 UBE2V2 C14ORF2 VPS35 CDK14 HSP90AA1 BEX2 ATP1A3 UBE2QL1 ANXA4 TUBD1 EPB41L3 OPCML PPP2CB ATP2B4 UQCR10 CAMK4 EIF1B PCP4 CHCHD2 PRKAR1A NAT8L KLHDC3 KCNMB4 POLR2I SPARCL1 DMTN NPTXR TLN2 NAP1L3 RPS15 TMEM59L RAN CHMP4B USMG5 SLC12A5 NDRG3 ROBO2 ITFG1 PPP3R1 TERF2IP ZBBX SLC8A2 TCEB2 AP1S1 MPPED1 TCEAL5 RHEB ARL6IP1 CORO2B MORF4L1 GDE1 NDUFA5 KIF3C PPP1CB PPP2R1A SLC38A11 ARHGDIG LYSMD2 MAST3 RPL15 PRDX3 COPG1 MAL2 NEFM SYN1 BEX4 SNX10 SYT11 EPDR1 NUDT21 MGST3 RPL38 MAGED1 PCDH17 NCEH1 TMEM160 RPL13A YWHAG KCNAB2 CRYM ARF3 OLFM1 ATP5E MAP1LC3A ATP5J TKT ELMO1 RNF11 GYG1 STMN1 FXYD6 EFR3A CERS6 ATP5H THY1 GRIN2A RNASEK-C17ORF49 TM2D3 MAPK1 ANXA7 NDUFA1 CD99L2 HIGD1A EIF1AX OAT DIRAS2 GTF2H2C_2 NFIA AC244489.1 RP11-219A15.1 ATP1A1 SYT5 MTND1P23 ALDH5A1 PFKP SOX2 PINK1 LINC01085 GADD45GIP1 PPP3CB GTF2B TP53I11 NDUFB8 DCTN1 BSN PAX7 ID2 CCDC85B ERBB3 COBLL1 CTNNA2 CNTN1 ARL8A IFI35 FKBP4 HS6ST3 PLD3 NDUFB2 CMAS PTMA PHB ANXA6 FGF12 LAMTOR2 NAA38 BTBD10 SNCA AP2S1 MDH1 SIGIRR PTPRT CCDC61 SEZ6L PRUNE2 NCDN CADM3 COX14 CDK5R1 PGRMC1 LPPR4 UCHL1 CCDC69 CADPS2 STX1A ANAPC11 CYCS CSDE1 NDUFB10 NRGN NEXN KCNK2 MRPL52 INCENP FASN ALDOA GRINA MFN2 SIRPA DRAP1 IQCK SUMO2 GORASP2 C18ORF32 DDAH1 C4ORF3 CKB OXCT1 SPON1 FAM189A2 PHYHIP TRIM36 PKM ACTB CHGB COL21A1 KCNF1 KLHL5 SERINC3 MTCH1 SNCB TRIM37 NREP SPDL1 SMIM13 CTNNB1 PPA1 EID1 MYL12B C1S KITLG SPRN C2ORF80 ATP6V1F ALDOC HCN1 ZNF547 CRYZ ENOPH1 RAB3C ATP6AP1 NAPA OPA1 ATP5B GDA PTPRN SARAF CKLF PPP2CA SEZ6L2 PPIH JUND RPL39 ADSS ANO3 TUBA1A ENO2 MORF4L2 DCTN3 C14ORF132 SYNGR1 TUBB4B TCEA2 CDK17 TUSC2 DSTN APLP1 BNIP3 DNAJA1 TMX4 PNMAL1 TPD52 ATP5I CDKN2D ARL2BP HINT1 KCTD12 TOLLIP LMO3 CPLX1 CDH7 NDFIP2 GAP43 ITM2C PARM1 SSTR1 ATP6V0C CCDC115 ATP6V0D1 RABAC1 MZT1 CABYR GRM3 ATP2A2 RXFP1 NUAK1 RAB4A WSB2 PDE1A ACTR10 FBXW11 RPL36A EPS15 PNMAL2 INA CYFIP2 TBR1 PCSK1 DNAJB6 IFI6 OLA1 UBE2M SLIT3 C1ORF233 SLIT1 MYL6 CTBP1 NELL2 TMTC4 HMGB3P3 MRPL55 TENM3 PACSIN1 EFHD2 KIF5A HSPE1 PPP2R2B PAM LHFP PDZK1 GSKIP FLOT2 DNER MAPRE3 COX6C FSCN1 ATP6V0E2 CD59 HOPX PSMB5 HTR2A UQCRC1 MLLT11 MORN2 GABARAP SOX9 CYP26B1 CXXC4 RAP1GDS1 PEG10 KCNAB1 RAB7A HPRT1 NCAM2 CST3 STMND1 SERPINF1 NAP1L2 ATP5C1 COL6A1 NKIRAS1 GNB1 EEF1A2 MRPS7 AHNAK2 TMSB4X PCDHA10 TMEM144 PGK1 RPL31 GRPEL1 NDUFB1 CAMKK2 ACTG1 UQCRB FKBP1A TCEAL2 PID1 COX7A2 HAPLN4 COA3 FAM134A CPNE8 BAG4 EFCAB10 STK24 GLO1 TOMM22 MMP24-AS1 AZIN1 TMA7 PFN2 COX4I1 UBL5 ATG101 CYP2R1 PRDX5 CNIH3 S100A13 SNAP91 BEND5 SPCS2 SH3GL2 UBE2D2 STX1B PGD COPS8 EIF1 SYNPO MAP1A C12ORF49 AP3S1 RAB27B ATP9A FTL TMEM35 STAG3 CRIM1 RTN4R RP11-20I23.1 IQSEC1 COX8A ASCL1 RHOA ATRN NARS IDI1 MTPN BANF1 BCAT1 UROS NPM1P30 PTCHD4 HMGCR SRP9 PRKAR1B TAGLN3 SCOC CNR1 PI4KA AP2B1 NDUFC2 TUBB4A MED10 EGFL7 VDAC1 CITED2 GABARAPL2 SNCG OCIAD1 RPL32 NEGR1 NDUFB4 RPL26 CALM2 BEX1 CLSTN2 SLC38A1 HMGCS1 RPL7 NSF RPL6 RPL41 TUBB3 PSMB3 ATP6V1G2 RPL21 TUBB TBC1D15 ZNF385D\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "cortical layer 4 excitatory neuron" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MTRNR2L1 SNAP25 SYTL2 MT-CO1 MTRNR2L12 MT-CO3 ATP2B2 SYT1 PRNP MT-ND1 OLFM1 MT-ND4 RTN3 MDH1 PHYHIP CLTC NAT8L MTRNR2L6 IDS SLC17A7 THY1 ALCAM RP11-111M22.2 PACSIN1 SNCB ATP1A1 PPM1A GABRG1 CCK PDP1 PEBP1 ATP2A2 MT-CYB SAMM50 ATP1B1 MT-ND5 OPCML NREP NPTXR EGR1 PPP3CA ACTB SPARCL1 ATP9A STMN2 NEUROD6 DCLK1 PRKACB PREPL CHN1 FTH1 PJA2 CAPZA2 RTN1 TSHZ2 SLC9A6 VAMP2 YWHAG KLC1 CLU CADM2 OCIAD1 SSBP3 SLIT1 BASP1 PSD3 POMP CFL1 RP11-219A15.1 GRIN1 ZNF385D TF NR1I3 HNRNPA1P40 MAP1B SERPINI1 HK1 WDR47 KIF21A MLLT11 RAP1GDS1 COPS8 SLC2A1 PRKCE MZT1 AP2B1 TSC22D1 ATP6V0E2 YWHAB CPE MT-ATP6 VPS35 DYNLT3 RPL23A LMO4 PNMAL2 RPL41 FAM219A STXBP1 CABP1 RCAN2 COQ10B RAB6B SYN1 SERINC3 PGM2L1 WSB2 NME1 PCDHB10 ATP5F1 EFHD2 SV2B MARCKSL1 C1ORF52 HS6ST2 GOLIM4 FAIM2 HCN1 SPOCK1 SNRPN PPP2R2C ARPP19 MAP1LC3B PCDHA4 WBP11 QDPR CX3CL1 PCDHGA5 MRPL55 UBA52 WASF1 EIF1 MAGED2 NEGR1 ARL4C KCNAB1 C1ORF115 BAI2 HSPA8 SLC24A2 PITHD1 ATP6V1B2 UQCRC1 SCOC PRPH2 SYNJ1 GFRA2 NDRG4 NAP1L3 SNRPE NDUFA5 ENC1 RPS15 COX5A CDH7 RPL35 TNS1 BEX2 RNF11 SH3GL2 SEZ6L2 CTNNA2 CAMKK2 TRAPPC1 MT-CO2 PCSK1N ATP5I PNMA2 RPS27A CALM3 CTNND2 ZNF703 TMEM130 OLFM2 PTGES3 ZBTB18 ARF1 SCN3B SPRTN GLIPR1 SKP1 STMN4 SYT11 NPTX1 GRIN2A PLCB1 ITM2B DYNLRB1 PNMAL1 ARL8A EIF5A2 CALM1 TMA7 COL13A1 MGST3 FBXL16 FAM163B ARL6IP1 ENO2 SLC1A2 CTNNB1 COPG1 BSN LMO3 C1ORF194 RASSF8 NFE2L1 RPS5 MPC2 INPP5F CFL2 BTBD10 ANXA7 RORB TOLLIP OAZ1 STMN3 GDA EPB41L3 MT-ND3 INA GOT1 BEX4 PSMA7 C5ORF63 CAB39 TRMT112 EZH2 ID2 APLP1 ATP6AP2 ATP1B2 TGOLN2 KLHDC3 ZFP36L1 RPL32 PSAP PCDHA9 PRKCB TMEM35 GABRA5 TSPAN7 TPPP PFDN1 GNAQ PPP1R9B SARAF NDUFB2 CLSTN1 CD24 LINGO1 CTSD TAGLN3 PPP3R1 MAPK1 NCDN ADAM23 AURKAIP1 LDHB GADD45B EIF4G2 YWHAQ IPCEF1 B3GALT2 CREG2 SPOCK2 ATP6V1G1 NRGN TMEM147 NHP2L1 BSCL2 NGFRAP1 PFKP RTN4R TUBB4A MTRNR2L8 ARFGAP2 ZNF365 EPHB6 RPL13A ATP6V1G2 TBC1D15 CFH\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "cortical layer 4 excitatory neuron" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MT-CO1 MT-CO3 MT-ND4 SNAP25 MT-CO2 ATP1B1 SYT1 MT-ATP6 CHN1 MAP1B MT-CYB MT-ND3 MT-ND2 CALM1 GDI1 MT-ND1 CALM2 SPARCL1 CKB STMN2 STMN1 RTN1 YWHAH ARL6IP1 PRKACB FAIM2 PKM YWHAZ PPP3CA PIK3R1 ACTB NAPB TOMM20 MTRNR2L1 HSP90AA1 ACTG1 DPYSL2 NUAK1 MTATP6P1 SLC12A5 HSP90AB1 VSNL1 CPE PRNP YWHAG NECAB1 PPIA NRGN TUBA1B SERPINI1 RTN4 RTN3 CTNNB1 ENC1 ZBTB18 SLC30A3 STXBP1 PEBP1 LMO4 SUMO2 VAMP2 DYNLT3 ARPP19 PREPL KLC1 YWHAB OLFM1 APLP2 CADM2 DNAJC6 TUBB2A LMO3 MLLT11 SPOCK1 HMP19 GPM6A EIF1AX IDS TSC22D1 CFL1 CAMK2G GAPDH PJA2 TMSB10 NRCAM PRKAR1A SLC17A7 NDFIP1 SERINC1 SNCB GAP43 TSPYL1 BASP1 TSPAN7 NPTN DCLK1 TMSB4X SNCA IPCEF1 EIF4A2 TBC1D15 B3GNT1 ATP6V0E2 OAZ1 RAB2A RPL21 PCDHA4 CDK5R1 SLC39A10 SULT4A1 SKP1 KIF5A APLP1 SNRPN ATP6V1B2 TPPP CSDE1 TAGLN3 MTPN DYNLL1 TSPYL4 CALM3 CLSTN1 PLD3 FTH1 BNIP3 CREG2 FXYD6 WASF1 ITM2B UBC SYN2 TCEAL2 RAB6B REEP5 GRIN2A CCK EID1 TUBB4A ATP9A ZFAND5 GABARAPL2 CHL1 SYT11 DPP6 PSAP NAP1L2 UBE2V2 FKBP1A KCNF1 PNMA2 RAB3A MTRNR2L6 CAMK2N2 CRIM1 MT-ND5 TMEM130 CAP2 APP MAPK1 ACTR1A PARM1 NMNAT2 CAPZA2 KLHDC3 FAM3C EPS15 RPL31 RAPGEF5 CYCS SPTBN1 TUBA1A JUND RAB3C ARL6IP5 GABARAP AP2M1 PPP2R4 SERINC3 KCNAB2 PRKCB NFE2L1 SPOCK2 INPP5F PRKAR1B PAFAH1B2 CA10 SNX3 AP2B1 PAK1 MTCH1 SLC6A17 STX1B DHCR24 MORF4L2 CEND1 MTRNR2L12 EIF1B NDRG4 CADM3 UCHL1 PGK1 TOLLIP SYN1 RPS15 NPTXR THY1 SLC38A1 CABP1 ATP1A3 HTR2A LMBRD2 VSTM2A PSD3 VPS35 ATP6V1A NBL1 MDH1 MARCKS ETS2 RGS4 MYRIP ELAVL2 PCDH17 KIF1A SUB1 CCDC85B MAP4 SYTL2 RAB3B ALDOA DNAJC21 ARHGAP35 CD59 KIFAP3 NRSN2 RLIM PSMC1 DCC PDP1 FXYD7 ATP2A2 CHMP4B SIRPA TMEM150C ENO2 CA11 UBE2E3 EFHD2 MAPRE3 CDK14 SARAF HSPA4 PTPRN2 OPCML PFN2 BSG OPA1 ETV5 CPLX1 FAM127A PAQR8 MAPRE2 STMN4 PHYHIP ATP6V0C PTPRN SLC8A2 LDB2 GRIN1 ATP6V1E1 CTNND2 CNTN1 NAP1L3 ELMO1 LINGO1 GNAQ SYT4 RP11-20I23.1 MGST3 AES HK1 NUDT4 BEX2 ATP2B2 SLC9A6 HPRT1 CX3CL1 SUMO3 ATP6AP2 CERS6 SLC7A8 MAP2K1 ACOT7 NHP2L1 DNAJB6 VAPB RAP2A SEZ6L2 DUSP6 GNG3 CLDND1 NEUROD6 NDUFS5 CMPK1 CCT5 TOMM70A RNF11 SCN3B RASGRF1 SCG2 STMN3 SNX10 MAP7D2 CLSTN2 ANXA7 AP2S1 ARPC4 NEGR1 RAB11A AP3S1 BSN CTSD ACTR6 FAT3 UQCRH RPL37A PPP2R1A CPNE4 TERF2IP BIRC5 ATP5B TRIB2 MBP RAB5C RPL38 TPD52 SRP14 NGFRAP1 COX7C RPS28 SCN7A ARF3 PTPRS TCEAL5 ZNF365 RRAGA WBP2 PTGES3 EGFL7 COL5A2 RHOB COX5B ATP1A1 DCTN1 GUCY1B3 COX14 TMEM35 FTL NDRG3 SYNPR SH3GL2 KLHL12 ELAVL4 FKBP8 MT-ND4L CDK17 DPY19L1 SLC25A5 PPP1CB CDK5R2 UQCR11 SYNGR1 PTMA PGM2L1 GUK1 ZMAT2 SYT5 TUBA4A NSF TUBB3 NR1I3 SV2B C1ORF233 TMEM160 SLC38A11 CDS1 TSHZ2 REPS2 MAP1A ITFG1 RP11-111M22.2 RPL35 OPN3 RHEB SLC25A6 H2AFZ KCNA2 OLA1 RPL11 ABRACL HMGCS1 VDAC1 EGR1 CAPZB UBE2M GRB14 HS3ST5 C1D BHLHE40 MTND2P28 SERF2 FBXL16 DOCK10 FAM131B MET RPL6 C14ORF2 SYNJ1 MPI TPI1 PRDX5 VGF PPM1A CMAS ENOPH1 OLFM2 UBE2D2 NEFL FUNDC1 ALKBH1 EIF1 NPTX1 ARHGDIA DMTN TRMT112 BAI2 TMEM59L CNRIP1 CDC42SE2 PNMAL2 EIF4G2 GHITM MRAS PCMT1 MIEN1 HEY1 MRPL52 UQCRC2 WDR47 PHLDB2 CAPNS1 COX8A RP11-195F19.5 ADD2 ATOX1 CLTB ITM2C TUBB4B LMBR1 SSBP3 ISG15 CCDC25 GPR6 NDUFB2 FSCN1 SLC35B1 CADPS2 NXPH3 LSM4 SEPW1 PLEKHH2 PPARGC1A PGAM1 PI4KA TBR1 APEH PID1 PRDX2 REEP2 SCOC EDIL3 COX7A1 EXTL2 PSMC5 CHP1 GDE1 FAM84A PTK2B TKT EPDR1 PPP1R9B SYNGR3 ASAP2 MPC2 RAB3IP C1ORF115 PSMD2 TCEAL3 SH3BGRL3 OR6D1P PTPRT MAP2K4 CDKN2D BCAP31 PPP3R1 PITPNA GPR116 RAB7A UBB NDUFB10 SNAP91 MED10 BAD TLE4 MAGED1 ANXA6 PCBP1 FGF12 LYNX1 TM6SF1 WSB2 PAM ATP6V0B NTNG1 SELM LGI3 HS6ST3 GPX4 APBB1 NME1 C3ORF80 PELI3 AHNAK2 SMIM13 CYC1 BCAS2 MZT2B HIGD1A RHOA NAT8L CLIP3 FBXW11 DNER NDUFA1 RHBDD2 SLC22A17 DYNLL2 SLIT1 KCNC3 FASN IDH3A RAB6A CAMKK2 MAST3 WBSCR17 SLC24A2 ARL4C ARHGDIG PITHD1 NEUROD2 C7ORF50 TCEB2 CYFIP2 RCAN2 PDCD5 CCDC115 MBOAT7 CCDC184 OAT MTFP1 NDUFA8 MDH2 THOC7 SRR PLCB1 SCN2B RPL8 CTNNA2 ANXA4 SNN UBL5 MPPED1 LHFP SLC25A22 C1ORF52 GPR68 EIF5A2 PPTC7 CDK5 SDCBP CNTNAP5 RAN UBE2QL1 IGSF21 ZNF503 PSENEN SCN1A OXR1 SYT13 C6ORF1 DSTN GPX1 COL6A1 GDA SEC61G RNF208 COL12A1 GPR26 TRHDE MORF4L1 RAP1GAP2 CNTNAP3 WIF1 SNRNP25 YJEFN3 NSDHL SCD5 BAALC NDFIP2 CPLX2 MARCKSL1 HS6ST2 PRPS1 MAP7D1 NDUFB1 DKK3 ENSA DIRAS1 MTRNR2L8 DYNLRB1 CLEC2L SLC7A5 RORB DYNC1I1 HOMER1 ATP5G3 CRYZ HINT1 MRFAP1 SH3BGRL2 CACNG3 SERPINF1 SLC9A1 TESPA1 SLC25A4 PCDH8 SPRN DNAJA1 KIF3C ARF5 GADD45GIP1 STX1A PSMB7 ID2 CALB1 ATPAF1 BTBD10 ATXN10 ARL2BP NEFM CLU RPL15 PSMD8 PSMD12 PPP2CA RIIAD1 CDH8 RPS5 RPL7 NUDT21 ASAP1 AK5 BEX1 NCOA4 C19ORF70 LINC00086 KCNH5 HMGCR ARF1 PLCH1 PPP2CB CDHR1 CYSTM1 FAM163B FLOT2 CFH KRT17P6 RELN NGRN RPL41 EPHB6 MIF ATP6V1G2 PCDHGA6 PCDHGA10 PCDHGA5 TUBB TF\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "cortical layer 4 excitatory neuron" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: RAB3B SNAP25 GNAQ SYT4 HNRNPA1P40 NDUFB2 VAMP2 BEX1 BAI2 ATP5G3 NR1I3 MAPK1 RPS27A TNNT2 TMSB10 TUBB2A RPL21 CNR1 PIK3R1 HSP90AB1 NUTF2 SARAF SLC39A10 BRK1 RP11-111M22.2 CALM2 ATP5B ITM2B ATP2A2 CABP1 TF GRAMD3 EGR3 CD63 AHNAK2 MT-CO3 SALL2 MT-ND5 PTPRN2 SV2B TLN2 EDF1 NGEF PGM2L1 NFIA SLC38A1 ATP6V1A PRDM8 SCN1B FXYD6 MGST3 SYN2 SERPINE2 UQCR10 PHLDB2 NSF EIF4A2 TMSB4X LDHB CAB39 RPS28 RAB3A UCHL1 TSPAN7 PPDPF WBP2 ATP6V0D1 GPM6A PCDHGA6 ATP1A3 LMO4 PCDHGA10 FAM3C CLDND1 CAPZA2 CDH13 SKP1 APP RPS15 COX14 DNAJA1 CLPTM1 LRMP C14ORF132 SLC22A17 CHN1 EGFL7 NDUFB7 OR6D1P FIS1 RAB11A UBC BCKDK NDRG4 PINK1 TUBD1 TTN NDUFA13 MAPK8IP2 MT-CYB PLD3 MAP2K2 RPL35 EIF4G2 NGFRAP1 SH3GL2 PRKCB RPS10 FAIM2 RPL12 MCHR2 SKAP2 RPL10A AP3S1 ANXA7 KIF3C DLD EID1 NPTN GPR26 PGAM1 ACTG1 OAZ1 CKLF DCLK1 NDUFB1 ELMO1 H2AFZ TMEM132D SNX10 DNAJC5 NAPB BASP1 S100A6 GDA SLIT1 EPHB6 SLC7A8 UBA1 LDB2 IPCEF1 BEX4 BLOC1S1 SYT11 RHEB PNMAL2 CTNNB1 MYO10 MPC2 KLHDC3 PTGES3 PTPRN SYT17 NAA38 PNMAL1 RPL41 SMYD2 PBXIP1 COX4I1 SLC30A3 DPYSL2 NEFM COL6A1 TRHDE GAPDH CRYAB STMN2 MORF4L2 RPL37A RPL17-C18ORF32 ALDOA BIRC5 RPL17 IDS AC244489.1 ARFGAP2\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "cortical layer 4 excitatory neuron" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: SYT1 MT-CO3 MT-CO1 SNAP25 CALM1 TSPAN7 MT-CO2 MT-ND2 GPM6A CCK CALM2 YWHAG CKB STXBP1 EIF4A2 CHN1 RTN1 PFN2 SEPW1 MT-ND4 PSD3 DPYSL2 TMSB10 MT-ATP6 RTN3 MTRNR2L1 NDRG4 RPS28 SYN2 TMSB4X STMN1 MAP1B SPARCL1 HSP90AB1 RPL31 KLC1 SYTL2 RPL13 PRKACB ARL6IP1 GDI1 RPL17-C18ORF32 SERINC1 NRCAM PEBP1 PPP3CA LDHB RPL32 TOMM20 PDP1 RPL18A RPS12 SLC22A17 TOLLIP PSAP CNTN1 PCDHA4 PREPL CPE MT-CYB GRIN1 ENO2 ACTB STMN2 FXYD6 HSP90AA1 THY1 ZNF385D ATP1A1 NECAB1 MORF4L1 SLC24A2 SPOCK1 CMAS NELL2 RAB6B TSPYL1 RPL41 SLC17A7 SUB1 WDR47 NPTN IQSEC1 RPL6 GNAQ BEX1 NDUFS5 ITM2B STX1A RPL15 RAB11A SKP1 PRKCB YWHAZ CPLX2 ARHGDIA PRKAR1B RPRM ARPP19 SOD1 KCNAB2 TMEM59L BAALC UCHL1 FKBP8 CLSTN2 PRUNE2 NNAT CLU PSMD8 PPP3CB TSC22D1 CAMKK2 NREP RPL38 CFH TBC1D15 ATP6V0C RP11-20I23.1 NGRN IDS RPL3 CDK5R1 TPT1 SIRPA ATP5O TUBB TCEB1 TAGLN3 MRFAP1 YWHAB GABRA1 ARF1 CFL1 GAP43 MANBAL CADM2 CALM3 TPD52 ATP1A3 VSNL1 PKM LYSMD2 ATP6V0B RPL26 RPL11 PCDH19 RELN BEX5 BTBD10 ATP2A2 SUMO2 NAP1L3 STRAP FTL ATP5E SCN3B DCLK1 ACTG1 WBP2 NEGR1 DPY30 SH3GL2 EIF4G2 NMNAT2 APLP1 CHL1 PJA2 MAL2 NDUFB10 B3GALT2 ATP6V1C1 KIF5A B3GNT1 TUBA1B MTATP6P1 TSPYL4 LAMTOR5 RPH3A DCTN1 TOMM7 NGEF UQCR10 APBB1 SNRPN SLC1A2 YWHAH INSIG1 MT-ND3 SUMO1 USMG5 RNF11 NUDT4 RORB UQCR11 ATP6V1A SCAMP5 OLFM1 PNMA1 CERS6 GUK1 ZFAND5 COX5B PARM1 BAI2 SNCB TMTC1 NFE2L1 PRKCE GNG3 DCC MAP1LC3A FAIM2 PGAM1 POMP COX7A2 NPTX1 NDUFA5 BEX4 LRP1B ALDOA MORF4L2 GABARAPL1 ATP2B2 ENC1 CABP1 RPL21 MTRNR2L6 ARFGAP2 TUBA1A NAPB NUDT21 NDUFA12 PELI3 NDFIP1 DSTN MMP24-AS1 TMEM11 VDAC3 NDUFB8 CTC-575D19.1 THOC7 ATP9A CHMP4B PCP4L1 IGSF21 TMEM130 EIF1AX EFHD2 GUCY1B3 CHMP5 SLC6A17 HSPA8 UBL5 NDUFA4 DNAJC5 VAT1L POLR2I GAPDH ITM2A CTSD NAP1L2 ATP6V1E1 ATP5J UQCRFS1 MZT1 MAPRE3 SNRPE MAST3 SAP18 DDAH1 UQCRH NGFRAP1 APOL6 SNRNP25 PDCD5 RPS15 SLC30A3 ETV1 C1ORF115 DYNLRB1 RCAN2 YAF2 MAP2K1 PTK2B STMN4 APLP2 MRPS28 LL0XNC01-16G2.1 CAMK4 DYNLL2 TMEM160 UTRN HCN1 PEX5L TERF2IP PCDHB4 EPDR1 SSTR2 NDUFA1 ZBTB18 KRAS FAM131B PHF11 TSHZ2 NDFIP2 CYC1 ITFG1 TUBB4A NSF SELT PRDX3 PIK3R1 EHD3 CAMK2G GDA PGK1 UBC LGALS1 SQLE KLF10 NRN1 NEFH COX7A1 ISCA1 UQCRB TUSC2 PPM1A RAB6A MYRIP SLC9A6 CTNND2 FSCN1 SYT13 BASP1 SLC7A1 DYNLL1 PSMB5 FAM96B TMEM120A PPP2CA PRNP RPS6 MPC2 TPI1 CAPNS1 CPLX1 ATP6AP1 NRAS NDUFA13 BSN PTPRN RRAGA PDE1A CDS1 KCNC2 CAPZB MAP7D2 RPL13A HSPE1 FAM127A CLTC SRP14 PLD3 ZNF365 ATP5C1 ATP1B1 TUBB4B MARCKS UBE2QL1 IQCK REEP5 RPS3A RXFP1 CDKN2D SERPINI1 SYNJ1 CX3CL1 PET100 ABHD8 HS3ST2 CCDC85B VAPB VPS35 H2AFZ VAMP2 OXR1 PPIA FTH1 FKBP1A APP JAKMIP1 COX17 FIBP VSTM2A RAB40B PSMC5 SYT4 RPL10A YDJC SYNPO GSK3A RHOB HN1 LPPR4 ATP6V1G1 PHYHIP SNAP91 RAB37 RP11-632C17__A.1 PCDHGA5 PLEKHG1 PACSIN1 ELAVL2 UBB RAB1A CTNNA2 CLIP2 SV2B ENSA CISD1 PPDPF THSD7A ARL6IP5 STMN3 KCNA2 PCMT1 UBE2V2 HMGCR EID1 CADM3 SYN1 NCOA4 ARL8A GLIPR1 PIP4K2A TPRG1L ISCU MRPL15 GABARAPL2 CLTA COX4I1 NEFL FBXL16 KIF21A PPP1CB PEA15 WSB2 PIN1 RTN4 SCN1B MT-ND1 MRPS7 CSDE1 PSMC3 NCDN RPL35 PRKAR1A TCEAL5 ATP6V0D1 EDIL3 TBCA C14ORF2 MZT2B TPPP KLC2 KIF3C PRDX1 DYNC1I1 ANXA6 AK5 IPCEF1 ZMAT2 DIRAS2 RPL8 ENO1 ACTR6 ID2 RAN ARF3 NDUFC1 CNTNAP5 COPS8 DLD GLO1 OCIAD1 UBA52 CLSTN1 SUMO3 GRIN2A AES PAFAH1B2 NAT8L ACTR1A NDRG3 GPR158 KCNH5 CKLF GPX4 NDUFC2 RHEB NCEH1 GHITM LHFP COX6C MLLT11 NME1 WASF1 SLIT1 RBX1 TMEM14A LMO4 MT-ND5 COPRS PSMC1 PLCB1 CAB39 UBE2M PAK1 LMO3 CCDC115 ADAM23 PINK1 SYT17 ZNF174 CA11 SNCA TSPYL5 TUBA4A FBXL15 PCSK1 CREG2 UQCRQ NBL1 RAB3A CAP2 RAP1GAP2 NAA38 PLCXD3 FAM163B GRM8 PNMAL2 GTF3A PGM2L1 C16ORF13 ATP6V1G2 RNASEK-C17ORF49 PSMB3 DLC1 TUBB3 MIF AC244489.1 NR1I3 PLEKHD1\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "cortical layer 4 excitatory neuron" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MT-CO1 MT-CO3 SNAP25 MTRNR2L12 MT-CO2 MT-ND1 MTRNR2L1 NECAB1 MT-ND3 MT-ATP6 MAP1B HSP90AA1 MT-CYB SYT1 RPL10A ELAVL4 GPM6A MT-ND2 WBP2 PPP3CA RPL36A ATP1A1 YWHAG STMN3 TBC1D15 DNAJC21 RPL17 RPL17-C18ORF32 MTRNR2L8 WASF1 UBL5 MAL2 CALM1 BSN ATP1B1 PEBP1 APP RTN1 PLEKHG1 DPYSL2 RPL41 PGM2L1 WDR47 ATP2B4 KIF1A COX7C KCNAB1 TRMT112 NDUFA12 UQCRB SLC8A2 SLC38A1 CORO2B MTRNR2L6 SLC9A6 RAP1GDS1 PPP2R1A GRIN1 PCDH19 HOMER1 CDK5 CERS6 RP11-111M22.2 SAMM50 PHPT1 PRUNE2 NCAM2 NIPA1 TMTC1 PGD RHOB NAP1L3 CTSD SRP14 NRN1 ARL8A TBR1 EBF4 RPL31 KCNAB2 CLSTN2 CRIM1 MRPS7 SNRPN PPP3CB MYEOV2 KLC1 PREPL CLSTN1 PACSIN1 RPS28 APLP2 SLC25A22 KLHL5 GRIK3 KIF5A RNF208 NPTX1 FAM19A2 PPP1CB DYNLL1 PTK2B TIMP2 MORF4L1 ELAVL2 PITHD1 SYNJ1 NUAK1 CPE ARL6IP1 MARCKS TMX4 CAMK2D TPGS2 KIF21A BAI2 PRKCB SNN STUB1 UCHL1 PGK1 RPL7 ATP5E SEZ6 GAPDH MAPRE3 OLFM1 UBQLN2 PPP2R4 SLC30A3 KLHDC3 CTNNB1 GAP43 CAMKK2 MTATP6P1 CCK PGAM1 ATP6V1G1 ZNF385D SYTL2 RAB3B EPHB6 IDS NSF OPRM1 TPD52 CYB5R3\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "cortical layer 4 excitatory neuron" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: SNAP25 CAMK2D SYT1 EIF4A2 TBC1D15 OXR1 MT-CO3 MT-CO2 RPL36A MT-ATP6 CHN1 BIRC5 TF SSBP3 COX6A1 IDS LMO4 DPP6 HPCA PRKAR1A CPE APP VSNL1 STMN1 PRNP SYN2 ARL6IP1 HOMER1 MAP1B PPP3R1 TESPA1 SAP18 SCD5 HSP90AB1 PJA2 PSAP CALM1 CX3CL1 OAT RTN4 RAB3B SYTL2 KITLG STMN2 VWA1 PHYHIP YWHAZ MTUS1 CERS6 ZFHX4 CPLX2 MAPRE3 ITFG1 CDK5R2 SLC17A7 ANXA7 ARF1 ATP6V1C1 RASGRF1 PTGDS RAB2A CLIP2 SARAF LMO3 CADM3 HS6ST2 LAMTOR5 CTBP1 YWHAB SLC8A2 ATP9A SPATA13 CRKL PEBP1 BAG4 SNAP91 MAP2K2 NPTX1 TRIM37 NR4A1 NRGN RTN3 IPCEF1 PIK3R1 DYNLT3 BOC GSTO1 CABP1 PLIN3 EIF1B ARF3 JUND FSCN1 ACTB SV2B MT-ND2 TPT1 GNAQ PLP1 CYFIP2 TRABD2A AES PCP4 AIF1L VEGFA NECAB1 AC244489.1 CALM2 GAP43 CDS1 REEP2 ZNF536 MT-ND5 TKT CEND1 NELL2 MT-CO1 DNAJC4 ZBTB20 OCIAD1 SNRPN C20ORF24 GLRA3 TGOLN2 NEGR1 SPOCK3 ATP6V1B2 CADM2 DNER TMSB10 NFE2L1 MAP1A GDI1 PDE1A SERPINI1 DYNC1I1 TOMM70A FAT1 CUBN PPP1R9B ASAP1 DOCK10 CLTA RP11-111M22.2 RORB PPM1A PAFAH1B2 TMEM144 NFIA SUMO1 MRPL33 TMEM88B RPL23A YWHAG SCN3B IDI1 ETV5 SLC9A1 GABARAPL1 SYNGR1 PCMT1 NUAK1 UQCRB WDR47 MYL6 PTGES3 UBL5 GLUL LINC01296 ATP6V0B ATP1A1 SEPP1 KLHL5 DAB2 DNAJC6 OLIG1 NRCAM INPP5F MT-ND1 TMTC4 SLC39A10 PHB BASP1 SYN1 QKI ATP11C HTR2A GMFB ST18 PCBP1 PIP4K2A ATP2B4 APLP1 FAM219A PPARGC1A NKX6-2 TRIM59 ATP1A3 ARF5 RP11-20I23.1 NGRN ATP6V0C HNRNPA1P40 ZNF385D\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "cortical layer 4 excitatory neuron" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MAP1B RAB3B RP11-111M22.2 SNAP25 ZNF385D CHN1 TMSB4X SYT1 CADM2 PLEKHD1 BIRC5 ARFGAP2 PTCHD4 MTRNR2L12 LMO3 MT-CO3 MT-ND1 DCLK1 PRKCB FAT3 TF MT-CO2 SLC35B1 ATP5A1 SLC22A17 IQCK OLFM1 ATP1B1 OXR1 KLC1 TMTC1 PGRMC1 NGEF ANXA7 SERPINI1 CTNND2 CALM1 SPARCL1 FKBP1A CMAS PIN1 NREP PRKACB ELAVL4 NPTX1 RORB DPYSL2 PRNP LAMTOR5 OR6D1P MTRNR2L1 CERS6 EFR3A CDK5R2 GNAQ PNMA1 ARL6IP5 EIF1AX GUK1 SLC38A1 TBCA SRD5A1 CDK14 CYFIP2 PIK3R1 MRPL20 MTX3 SYNJ1 ADAMTS6 SEZ6L LIMK1 CNR1 MTCH1 TUBD1 SLC9A6 DNAJC6 MAPK1 RAB4A NIPA1 GRP ENO2 POLR2J BANF1 KIFAP3 ITM2B PFN1 LMO4 KCNK1 RHEB PFN2 PDE1A GLO1 C1ORF52 GSK3A CAP2 SPTBN1 PPP3CA SCN1A ATRN GAP43 LPPR4 BCAP31 MAP1LC3A MT-CO1 STMN3 RPL13 SLC39A10 JUND CA10 GPR158 ATP1A1 RAB11A EDF1 FAM19A2 AES NAP1L3 CX3CL1 CTNNA2 STMN1P1 COL22A1 TUBB2A PODXL SH3BGRL2 NACC2 PHYHIP SARAF SLC17A6 CLSTN1 LRMP NECAB1 EIF4G2 TSPAN7 MT-ND5 ATP6AP2 SLITRK1 MZT1 CPE FXYD6 MT-ND2 ATP6V1B2 ACTB RPL32 CDK5R1 HSP90AA1 EPHB6 APLP1 OPRM1 C1ORF95 PRDM8 PNMAL1 PLD3 ZMAT2 CALM3 DPF3 SCN3B CDC42SE2 RGS4 ANKRD20A11P SNN PRDX5 PJA2 GPX4 ROBO2 RP5-926E3.1 C6ORF1 LMBRD2 KCNH5 PPP1CB MT-ND3 COX7C NAP1L2 SLC8A2 SNCG FAM3C NBL1 PLCH1 TMA7 TOMM20 RPS10 SNX10 CDH8 PPP2R2C PCMT1 SLC17A7 YWHAB SERF2 GHITM PREPL PLCB1 EFHD2 TUBA1A SRP14 BAALC FKBP8 PEBP1 NDUFA12 PCDH17 STMND1 SNCA PRKAR1A RPS28 ELMO1 SPRYD3 OPCML PLSCR1 ATP5J PSMD8 PRKCE TMOD2 NRCAM RAB3A OLFM2 ABHD8 CD99L2 FSTL5 STAG3 FNDC4 VAMP2 GPM6A SKAP2 SDCBP CDK17 SPOCK1 NGFRAP1 RAB40B SCOC RP11-20I23.1 ATP6V0C IDS MTRNR2L6 GPR98 GTF2H2C_2 SYTL2 TBC1D15 CFH\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "cortical layer 4 excitatory neuron" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MT-CO1 MT-CO3 CHN1 MT-CO2 MT-ND3 MT-ND4 MT-ATP6 RTN3 SYT1 YWHAG NRGN SNAP25 MT-ND2 MT-CYB VAMP2 TSPAN7 MTATP6P1 PNMA2 NGFRAP1 CALM2 VSNL1 ITM2B TUBA1B CAP2 CPE CALM1 NDRG4 MTRNR2L1 ZNF385D TF KIF21A KLC1 ITFG1 NRCAM PITHD1 PPIA DPYSL2 CLU C11ORF31 UHMK1 NPTXR SULT4A1 MAP4 PRKAR1B FAM19A1 PRNP SMAP2 RTN4 PNMAL2 CPLX1 PRKCB BSN ZFAND5 MTRNR2L12 PACSIN1 MTRNR2L6 RAB27B STXBP1 MAP1B YWHAB LAMTOR1 MT-ND1 ACTB UCHL1 PLCB1 SARAF RAPGEF5 PPP3CB TSPYL1 TMSB4X SYN2 FKBP1A SLC24A2 SERINC1 ENO2 HSP90AA1 HSPA8 CDC42SE2 TBCA ARL6IP1 ATP1A1 PRKACB CTSD PPDPF PTPRT SLC30A3 PEBP1 ESCO2 TMEM130 OR6D1P RHBDD2 TUBB4A GAPDH NPTX1 YWHAH NAPB PARM1 PNMAL1 PPP3CA ELMO1 PREPL LPPR4 PINK1 SYT11 TCEAL5 GDI1 STMN1 BEX5 ATP6V1B2 PEX5L PHLDB2 MTPN CEND1 PCSK1N EFR3A PMEPA1 UQCRH NEUROD6 KIF1A PRDX2 GMFB SNCG NXPH1 APP SYNGR3 IPCEF1 HSP90AB1 SCN1A SERINC3 FAT3 PRKCG TMEM230 RLIM PTK2B SYNJ1 DNER CADM3 PPP1CB EID1 FKBP1B PGM2L1 STX1A NDUFA5 NDUFC2 CALM3 MAP2K4 GUCY1B3 OAZ1 NDUFS5 ARL6IP5 PJA2 NEFL PCDHA10 CFL1 NREP SPOCK1 STMN2 SLC25A6 CADM2 PSMD2 CHL1 FAM127A SUMO2 SLC35B1 MAP7D2 FAM219A RPL31 H2AFZ RPL6 ARF1 NIPA1 DUSP6 VDAC1 SMIM13 ATP1B1 LINC00086 PHYHIPL MZT1 ELAVL4 TALDO1 TCEAL7 C1ORF95 TMEM59L KCNH5 DYNLL1 RAB3C CABP1 RTN1 NDUFA4 GHITM RBX1 AP1S2 WLS YAF2 SYNGR1 RNF152 YWHAZ OLFM1 PPP3R1 USP5 AMIGO2 SLC9A6 SIRPA ZBTB18 COPS8 AKAP12 DNM3 UBE2N IDH3A LINGO1 TRABD2A CDK14 MAPK1 TBCB TMOD2 SNAP91 APLP1 STMN3 COX7C TPI1 FXYD7 RGS4 RPL32 GPM6A BASP1 FAM43B OPN3 TPD52 MRPL55 RP11-195F19.5 ONECUT1 TUBB2A TOMM20 TMSB10 SPARCL1 TUBA1A LMBRD2 HCN2 SERPINI1 STXBP2 UTRN HOMER1 LUZP2 EIF4A2 ETV5 RASGRP1 LDB2 CDKN2D RHEB FAIM2 TCEAL2 STRAP OXR1 FAM163B CLDND1 KLHDC3 PTMA RPL13 INPP5F WASL PPP2R1A DUSP1 RAB31 CAMK2D NECAB1 EPS15 MAGED1 DMTN SUSD4 UBB NCEH1 CLSTN1 PRKAR1A FBXL16 LIMK1 MDH1 RAB5C SEPW1 PSMA7 GUCY1A3 PCDH19 TAGLN3 SNRPN MT-ND5 RAB7A NCALD ADORA1 RHOA SNCA PDE1A ZMAT2 PHYHIP UQCR11 ATP5A1 TERF2IP RAB3B SYTL2 RP11-20I23.1 NSF ATP6V0C TUBB GPR98\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "cortical layer 4 excitatory neuron" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MT-CO3 MT-CO1 MT-CO2 MT-ND3 MT-CYB MT-ND4 MT-ATP6 CALM2 MT-ND1 CHN1 SNAP25 MT-ND2 GPM6A SYT1 MTATP6P1 PPP3CA CALM1 MTRNR2L1 RTN4 TUBA1B PSD3 HSP90AB1 MAP1B ACTB NDRG4 PJA2 ACTG1 VSNL1 LMO4 ENC1 FAIM2 PRNP PREPL ZBTB18 CKB YWHAZ AP2M1 ATP9A SERPINI1 RAB2A GDI1 PKM PTK2B CCK TGOLN2 ENO2 BHLHE40 STXBP1 ARHGDIG NECAB1 PCDH17 SMIM13 SERINC3 UCHL1 MORF4L1 YWHAG COX4I1 OAT GRIN1 PIK3R1 CHMP4B MAPRE2 TAGLN3 SUMO2 RTN3 SLC25A22 PEBP1 JUND CTNND2 ATP6V1B2 RHEB KIF1A CX3CL1 KLC1 RAB6B PPIA SYT4 PRKAR1B MTRNR2L6 GDA STMN3 PGM2L1 RPS28 PNMA2 RPL37A MAP4 SCN3B LINGO1 UBE2V2 CABP1 PHYHIP NREP NDUFA12 IQSEC1 YWHAB STMN2 PRKACB RAB1A NPTN SNCA CDC42SE2 KIF21A RORB SLC24A2 TMSB10 TOLLIP EIF4A2 SLC7A1 UQCRH OXR1 WBSCR17 SERINC1 MLF2 NPTX1 PIN1 SYN1 ELAVL4 GHITM CDK14 TSC22D1 DCLK1 SV2B FTL RNF11 NRGN SLC9A6 CLU NARS CALM3 DYNLL1 PSAP SPOCK2 WASF1 TBC1D15 SPOCK1 DIRAS1 SPARCL1 EIF1AX SNRPN NRCAM NEGR1 DPYSL2 OLFM1 ATP2B2 SLC17A7 HMP19 BASP1 RGS4 ATP1B1 ARF3 OAZ1 ATP2A2 ARL2BP DIRAS2 EPHB6 NCEH1 ZFAND5 ACOT7 NDFIP1 MRAS APLP2 SCD5 OPA1 C14ORF132 ARPP19 VAMP2 SYNPO DMTN FKBP1A CERS6 PPP2R4 IDS HIGD1A ARHGAP29 PPP3CB RPL31 DNAJA1 ANXA7 MAPK8IP2 FAM219A EID1 C1ORF115 TPI1 GNG3 DNAJC5 SNCG PNMAL2 AP1S2 GADD45B BCAT1 BCAP31 MAL2 RAN PRKCE SPTBN1 CNTN1 PFN1 PFN2 DYNLT3 PPP2CA PSMC5 ARL6IP1 NAPB ITM2B NUAK1 AURKAIP1 TMOD2 RAB3A UROS TUBB4A LDOC1 PPP1CB PI4KA C3ORF80 CAB39 NDFIP2 RFK NUDT4 MT-ND4L RBX1 GABRA1 C1QBP CISD1 MAPK1 RAB11A NEUROD6 CDK5R1 FAM127A MFSD2A ATP5B TMEM158 MT-ND5 CCDC169 CADM2 CLIP3 APBB1 FGF12 ONECUT2 SUMO3 NFE2L1 UQCR11 RP11-20I23.1 JAKMIP1 SDCBP BCL6 ANO3 NAT8L APP RTN1 HOMER1 TMX4 RP11-111M22.2 FBXL15 ATP6V1C1 YAE1D1 NGFRAP1 RPL11 IPCEF1 CYSTM1 PRDM1 MAGED2 SERF2 SYNPR GFRA2 ATP6V1F TTC23L ATP2B4 DKK3 MAP1A KCNAB2 CYFIP2 AGA POU3F1 COX7A2 FUNDC1 LDB2 NEFL MZT1 POLR2M EPDR1 FABP3 PRKCB SNN GNAQ CSDE1 CCDC61 CCDC85B ADSS PGAM1 NAP1L2 NAP1L3 CRKL RABAC1 NEUROD1 DUSP1 MAP2K2 FXYD6 SYTL2 LIMK1 SUMO1 ATP6V0E2 YWHAH PTPRS LRRC59 ITM2C MAP1LC3B TPD52 POLR2L TPT1 FKBP4 NTN4 MCHR2 COQ10B SLC1A2 KIFAP3 EFR3A SYN2 TCEA2 NEFM GPATCH4 PPM1A COL5A2 TMEM155 STMN1 CBLN4 BRK1 ALDOC PRDX2 NPPB HS6ST3 BEX1 CREG2 APLP1 SYT5 STX1B SH3BGRL3 COX7B SH3GL2 ASAP1 THY1 PHKG1 HMGCS1 ATP6V0B SYT11 MYL12B GOT2 EIF1B AP2B1 MARCKS PDE1C OR6D1P SCOC TCEB1 VSTM2A HAPLN4 WBP11 NAP1L5 SNAP91 GSTT1 KIF5A SLC39A10 CMPK1 MAST3 PEA15 SSBP3 C1D BSCL2 PFDN1 YIPF3 REEP2 ATP1A3 SYT13 TPPP CAMK2D CRYM ENSA PPP1R7 PLCB1 COX7A2L SKP1 FABP5 HPRT1 MORF4L2 CDK5R2 DSTN PRELID1 SLC25A11 TRHDE CDH8 CDK17 HOPX VPS35 SLC39A3 SCAMP5 TUBB4B TMSB4X SPHKAP DHCR24 CA10 CAP2 SNCB PPP2R1A FKBP8 BEX2 EIF4G2 UBE2M BSG MACROD1 ADCYAP1 ENO1 DNM3 OLFM2 C9ORF16 FSCN1 SELT PSMD12 RSL24D1 C18ORF32 HSP90AA1 CHL1 ADAM23 TLE4 AP3S1 ATP6V0C MZT2B SUCLA2 SULT4A1 SOD1 RASSF8 TRAPPC1 RPL38 STX1A PAK1 MMD C4ORF3 TUBB3 RPL3 GABARAP NSF GPR98 ARF5 RPL13A MIF GTF2H2C_2 RPL21 PCDHA10 PCDHAC1 PCDHA4 PCDHA9 PCDHGA6 PCDHGA5 PCDHGA10\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "cortical layer 4 excitatory neuron" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: RAB3B SYT1 RP11-111M22.2 SNAP25 BIRC5 PPP3CA ZNF385D RPS6 RPS28 GPX4 ISCU OR6D1P PSAP RPS27A RPL32 CFH IDS SCAMP5 RPL6 RPL36A PRKCE STMN2 CALM2 STMN1 NDUFB4 PREPL UQCRQ TMSB10 ARPP19 MAP2K1 EPHB6 SSTR2 CABP1 ARFGAP2 PGM2L1 USMG5 SPOCK2 YAF2 COL24A1 PRKACB NMNAT2 CALM1 DYNLL1 EEF1A2 SPARCL1 UQCRC2 PRNP CYFIP2 UQCRH OCIAD1 SCN3B DIRAS2 CDK14 PHYHIP SARAF HSP90AA1 MT-CO2 RAB6A CCK FTL SCN1A BEX1 MGST3 EIF4A2 ATP6V1B2 KIF5A NREP FAT3 ATP1B1 TRMT112 CAMK2G ERH PRUNE2 RPL41 RTN1 TMTC4 RTN4 CHN1 PRKCB TMA7 ATP2B2 FNDC4 ATP5G3 GABRA1 DPY19L1 KLC2 PPP3R1 PRPS1 KCNH5 CREG2 RPS3A CBX6 SNAP91 DCLK1 ELAVL4 TOMM7 KCNC2 ANAPC11 CADPS2 UBA1 ESCO2 ATP6V0C RP11-20I23.1 BSCL2 RPL17 RPL17-C18ORF32 TUBD1 SNCG RPL7 FAM163B PLSCR1 CLTA CISD1 GLIPR1 HINT1 PIN1 ITFG1 HMGB1P8 BAALC UBB SLC26A10 C14ORF2 SCD5 ENC1 ATP6V1A TCEB2 YWHAG TM6SF1 DPYSL2 SEZ6L2 ELMO1 LL0XNC01-16G2.1 RAN NRGN SERINC1 LDHB NGFRAP1 BEX5 MAP1LC3A RAB37 APLP2 EBF4 CDC37 COX4I1 STMN3 BTBD10 OLA1 MT-ND4 CKB YWHAB PCP4 RPL13 GUCY1A3 KIF1A B3GALT2 PJA2 SNCA EPS15 RPL8 RTN3 CAMKK2 STMN4 C11ORF31 RHOB STX1A APLP1 NAA38 ATP5A1 ITGA11 MT-CO1 SPOCK1 GPM6A ST20 RPL38 VSNL1 GDI1 BASP1 VDAC3 ACP1 FXYD7 DNAJB9 MTG1 TMEM59L LAGE3 YWHAH MTCH1 PKM COL11A1 GLO1 LDOC1 FAM189A2 PNKD PGAM1 PFN2 ACTG1 YWHAZ PTPRS ACTB LRRC39 SAMM50 TMOD2 DYNLL2 RAB2A THY1 FBXL16 UROS RPL11 SEC61G RBX1 TBCA SERPINI1 SLC9A6 RXFP1 NPTX1 STXBP6 MED31 SLC12A5 GPX3 SKP1 INPP5F ATP1A3 CHCHD2 PPP2R4 SUB1 NDUFA13 EIF1 VAMP1 CAP2 NDRG4 PSMD12 SLC7A5 ARPC4 TMEM150C EDF1 TMSB4X BEX2 SV2B CX3CL1 MLLT11 RPL21 RPS12 NDUFB11 CEND1 ATP5G1 CCDC68 MRPS7 MSMO1 PEBP1 NRIP3 RPS26 NDUFB1 NDUFA4L2 RNF208 RPL12 PPIA NDUFA12 PPP2CB CADM2 ALDH5A1 HSP90AB1 CYCS RPS15 CORO2B CD24 FAM84A GUK1 TMEM141 TUBB4A NRCAM BRK1 COX7B RAP1GAP2 KIF25 NEFL RPL18A NAPB AP2M1 KIFAP3 PNMA1 HRK RP11-195F19.5 CNTN6 ZBBX SLC25A4 UTRN CFL2 NUAK1 ENSA EFHD2 PRKAR1A PTPRN2 STUB1 MT-ND2 TRABD2A USP5 TUBA1A MRPL20 RAB6B ETV1 MDH1 PRDM8 HTR2A NECAB1 SNRNP25 MYL6 TSPAN7 COX7C LRP1B FAM134A RNF11 NNAT KCNF1 NDUFB8 ESYT1 ARL2BP APP GRIN2A ATP1A1 ALDOA TENM1 HPCA FIBP SLC25A22 COX8A NRN1 CHI3L1 UBA52 ATP5B PLP1 PRDX1 TPI1 NAP1L5 COX5B DNAJB6 SLC35B1 NR4A1 MAGED2 ITM2B EDIL3 DNAJC6 NGEF TM2D3 MTATP6P1 PTCHD4 SERF2 RPL3 MT-ATP6 ATP6V1E1 AC244489.1 SYTL2 TBC1D15\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "cortical layer 4 excitatory neuron" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MT-CO1 MT-CO2 MT-CO3 MT-CYB MT-ND3 MT-ND4 MT-ND2 MT-ATP6 SYT1 CHN1 CALM1 MT-ND1 RTN3 ATP1B1 RTN4 RP11-111M22.2 OLFM1 ARPP19 APP SNAP25 TSPAN7 SPARCL1 ATP1A1 TBC1D15 BIRC5 SYT11 RTN1 DPYSL2 PRKAR1A NRGN PRNP AP2M1 FAIM2 MAP1B CADM2 SARAF CCK NDRG4 SEPW1 RPL41 SERINC3 LMO4 STX1A STMN1 NDFIP1 EIF4A2 PJA2 WASF1 GPX4 CDK5R1 CFH NGFRAP1 TSPYL1 HSP90AA1 CALM3 SYTL2 DYNLL1 VAMP2 RPL21 REEP5 NRCAM ATP5I SPOCK1 RPL13A SYT4 NECAB1 ITM2B RPL3 TMSB4X RPL32 SLC39A10 KIF1A MTRNR2L1 ARL6IP1 TUBA1B LINGO1 ARF3 ZBTB18 TMSB10 BNIP3 TOMM7 PLCB1 IDS TF MORF4L1 TMA7 CALM2 CEND1 ATP5B ETS2 ACTG1 REEP2 UQCRC2 KIF21A KLC1 PPM1A UCHL1 GABARAPL2 GAPDH ATP6V1G1 ENO2 CKB NCDN SERINC1 RORB PFKP SERPINI1 ATP2B2 BAI2 PPP2CB MAPK1 CABP1 PSAP MT-ND5 LDB2 RAB2A TRHDE BSG PCP4 PRUNE2 PHYHIP SLIT1 HMP19 RPS28 UBE2N SKP1 PNMA2 THY1 DNAJC6 YWHAH NAT8L NFE2L1 GOT1 HSP90AB1 OCIAD1 YWHAB MAGED1 SSBP3 CSDE1 HINT1 PSD3 YWHAZ DDN PPP2R2C RPL7 ATP6V0C RP11-20I23.1 HNRNPA1P40 ONECUT2 ZNF365 RPL12 KCNH5 CA11 CFL2 NEGR1 NAP1L2 FIS1 CYCS SERF2 NCEH1 GRINA MAPK8IP2 ANXA7 PDP1 FTH1 DNAJC5 ATP2B4 BCAP31 ATP6V0E2 PRDX3 ATP6V1A PPP3CB PI4KA CNTNAP5 PPP1CB KIF5A YWHAG RGS4 ATP1A3 NUAK1 PGM2L1 GPX3 PLD3 RAB3C CDS1 SLC17A7 HIGD1A CNTN1 STK24 RPL39 SLC30A3 MARCKS BEX1 PRKACB OXR1 CA10 NEFL USMG5 NELL2 RPL38 UQCR10 TMEM14A LAMTOR2 ENC1 RPL17 RPL31 BEX4 PPP2R1A RFC3 UQCRH GRIN2A ATP6AP2 SNAP91 RAB11FIP5 EIF1AX GDI1 RPL26 KCNC2 SCG2 BAD CD63 DEXI ZFAND5 ROBO2 UQCRFS1 NEUROD1 NAPA DYNLL2 FGF12 MTRNR2L12 GABRA1 SLC12A5 BASP1 GAP43 NARS TTN CX3CL1 ARL8B MAGED2 KCNA2 PCDH17 TMEM65 HSPA8 LYNX1 SYNGR1 FAM19A1 GNAQ FAM3C BEX2 CORO2B NDUFA1 CPE RNF11 PFN2 LMO3 PPP3CA RPL6 ACTB SYT13 CDR2L TM2D3 COPS8 MFN2 MPPED1 SNCG RPS10 MTCH1 ATP5E MAP1LC3B RPL13 PRKAR1B SOD1 PTPRS DCLK1 NSF ALDOA NR1I3 MIR6723 RAB4A NEFM EDIL3 CDH13 MANBAL NPTN SCAMP5 TRIB2 DPY30 TMEM150C SLC38A1 IQCK ATP2A2 GRIN1 RAB11A CAMK2D TMEM130 HRH3 SLC25A6 PREPL PNKD NHP2L1 ATP5G2 NDUFB1 GDA STXBP1 DRAP1 POLR2K RASSF8 MPP1 SEMA4G ADAM23 VGF OST4 MYEOV2 PTGDS SLC39A3 STMN4 SNRPN PITPNA TMX4 AES MED10 TOMM70A BCKDK NPTXR EIF1 CREG2 UQCRQ CAMKK2 SUMO3 DIRAS1 DLD TSC22D1 TERF2IP ARL4C CTSD CTNND2 CLPTM1 CDK14 SPDL1 MLLT11 KIAA1045 PACSIN1 SYNGR3 OLA1 SLC35B1 NWD2 MRFAP1 VDAC3 SPTBN1 SULT4A1 CLSTN1 PGAM1 NDFIP2 CLEC2L SIGIRR RNASEK-C17ORF49 NCOA4 NBL1 COMTD1 SPCS2 COX5B FAM43B DNAJB6 ELAVL2 CDH7 NDUFB2 GSKIP SLC38A11 HK1 WBP2 PITHD1 MDH2 LPPR4 FSCN1 BEX5 NRN1 ATP9A CCDC169 BSCL2 OPCML SYN1 ITFG1 HPRT1 BAG4 NREP PSMC1 C6ORF1 NRSN2 TIMP2 RPL35 PCYT2 MDH1 MFSD6 RAB6A PRDX1 CADPS2 PARM1 HDDC2 SRP14 TXN MAP2K4 PPIA PTPRN2 PIK3R1 TSPYL4 MORF4L2 ARF5 TCEB2 NCALD ISCU WDR47 ATP6V1F TMEM151A SCN7A CACNB1 TPGS2 NGEF DPY19L1 ADCYAP1 UBL5 CRYM GABARAP DYNLT3 UQCRB ASAP1 GPR6 GSTP1 NKIRAS1 ATP6V1B2 SOX4 CMAHP PEBP1 GUK1 RBX1 HMGCS1 APLP1 ENSA C19ORF10 KCNC3 PLEKHH2 RPL37A HN1 SCOC MRAS OXCT1 THYN1 TGOLN2 BMP8A GOT2 CHGB ADSS PTMA PKM TALDO1 DPP6 TPI1 RAB3A SCN3B SNN CLSTN2 C14ORF2 MTX3 VAPB SCN1A RASSF3 DNER TMEM258 RP11-195F19.5 UBQLN2 PRDX5 ARPC4 ATP5J2 INPP5F COPE NDUFA5 PLCH1 EPDR1 WSB2 SLC1A2 GPR133 SIRPA CAB39 LAMP5 GABARAPL1 EPHB6 SPHKAP PET100 CLDND1 LDHB SEC61G PNMA1 RHEB BRCA2 TRIM47 ITM2C SERP2 RPS6 RAMP1 CPNE4 C4ORF3 RAB27B PGK1 YJEFN3 SLC24A2 CAPZA2 SDCBP CRIP2 CDC42SE2 IPCEF1 CMPK1 TCEAL7 THSD7A FRMPD2 EIF1B UQCR11 TMEM59L ESYT1 SNCB HSPB1 MAPRE2 FAM134A C12ORF49 YDJC NAPB RPS26 CCDC124 COX7A2 SLC6A17 DYNLRB1 RRAGA GABRG1 PRDX2 GHITM BTBD1 SLC7A5 PRELID1 C1ORF115 SYNJ1 MRPL55 OAZ1 ANO3 ID4 PTPRT EIF4G2 SLC8A2 STX1B D4S234E ARHGDIG FAM174A RANBP1 NIPA1 TUBA4A RHOB GPR26 APEH ATP6V0D1 TOMM20 SLC7A1 RPS5 RPL11 CAMK2G CETN2 GLRA3 RPS2 PNMAL2 GPM6A GNB1 APLP2 RAB3IP CYFIP2 RPL18A DHCR24 MAST3 NDUFB10 RPH3A FAT3 SEZ6 NR4A1 LHFP TMOD2 RPS12 AURKAIP1 NDUFAF2 RAN DCTN1 UBB MAGEL2 UQCRC1 UBE2D2 JUND APBB1 CLIP2 KCNAB2 UBE2V2 TRMT112 STMN3 TMEM132D CAP2 GFRA2 CHL1 SELT CLTA CPLX2 SMYD2 EGFL7 PCBP1 CYB5R3 CLU ARF1 SPOCK2 CAMK2N2 MYL12B NGRN TUBB3 MTRNR2L6 RP11-219A15.1 ARFGAP2 RAB3B\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "cortical layer 4 excitatory neuron" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: RPL15 TBC1D15 SYTL2 RPL31 PRKCB SYT1 TMEM130 CXXC4 TMEM59L TPD52 CAPZA2 NPTN UQCRB KCNAB1 KCNA5 RORB BASP1 RTN4 NRN1 SNRPN ERH SYNPO CHL1 SOD1 CBX6 CTNNB1 KIFAP3 MT-ND2 OLFM1 TSPAN7 STX1B VSNL1 RPL32 MT-CO3 SNX10 SLC17A7 PPP3CB SKP1 LAMTOR2 PPP3R1 MAP1A SSBP3 CAPZB CDK5R1 PSD3 ACTB PRNP IFI16 PLCB1 SPOCK1 SLC30A3 RPL35 PTCHD4 EPB41L3 RP11-111M22.2 ATP5I TCEAL2 CADM3 HOPX SERPINI1 TUBA1B RPL13 KLHDC3 CCK NDFIP2 SPTBN1 MAP2K4 CDK5R2 RPL36A NRCAM SEMA3A RPL3 PHYHIPL KCNAB2 CNTNAP5 STMN2 FBXW11 ARPC4 PLOD2 GABRA1 FAM19A2 LMO4 TMSB10 PCSK1 TUBA1A VAMP2 PNMAL1 NMNAT2 PIK3R1 PKM SCN4B KIF3C GUK1 MRPL55 FTL PRKCG UBB NELL2 EIF4A2 ATP1B1 DBNDD1 NPTXR DYNLT3 GAPDH NDRG4 KCNK1 YWHAB ATP1A3 TEX2 BCAS2 PGM2L1 MTRNR2L12 SARAF EFHD2 MT-CO1 MTRNR2L1 CREG2 PREPL FNDC4 RASGRF1 STUB1 PTPRT DEXI CCDC25 SYT11 RPL37A PPP3CA NRGN TMEM35 WSB2 ENO1 MGST3 CYFIP2 MTRNR2L6 IDS ARF5 APLP1 HNRNPA1P40 PLEKHD1 NR1I3\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "cortical layer 4 excitatory neuron" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MT-CO1 SYT1 MT-CO3 MT-ND4 MT-CO2 SYTL2 SNAP25 STXBP1 MT-CYB RTN4 ATP2B2 PREPL RPL41 AES MT-ATP6 CSDE1 TOLLIP ITM2B SLC17A7 MTRNR2L12 MT-ND3 APP SLC24A2 PPP3CA RP11-111M22.2 ZNF385D RPL17 CFH CADPS2 MAP1B MFSD6 PEX5L HPCA ARHGAP35 MTATP6P1 ATP6V1E1 RTN1 MAPK1 MT-ND5 PJA2 ENO2 CHN1 CAP2 CHMP4B PSD3 COL11A1 PSAP PGAM1 GPM6A RPS4X COL12A1 LRP1B IPCEF1 TMSB10 TSHZ2 NDUFB8 SLC9A6 ZBTB18 SERPINI1 SERINC1 ELAVL4 CDK14 EIF4A2 CADM2 GHITM NRCAM PRKCE PDP1 PRNP NR1I3 PGK1 RPL17-C18ORF32 FSTL5 NCALD COPS8 PGD NPTX1 CHEK1 MZT1 HES4 CABP1 SYT4 RPS27A PPP2CB C19ORF43 INPP5F POLR3H TCEB1 MYL6B DCC MT-ND2 COPRS C12ORF57 RAPGEF5 CAMK2D RAB27B SCOC UBQLN2 CREB5 GABRA1 EDIL3 UCHL1 BASP1 TUBA4A YWHAG TEFM KIF1A NELL2 NCOA4 ATP5J RAB1A BAI2 CPE SSBP3 CREG2 DYNC1I1 STMN3 PRKCB SPOCK1 SEC61G LMO4 LMO3 ATP5H ACTB HSP90AA1 DNAJC5 HSP90AB1 CDK5R1 FRMD4B PLP1 RTN3 TMEM258 RAP1GAP2 VSNL1 GFAP DPYSL2 MYO1B CXXC4 IDI1 RPL39 SLC44A3 FAIM2 QDPR NDUFS6 SHC4 FTH1 SYT3 ATP5B EIF1 OCIAD1 NTN4 NAPB ERH ALDOC PLCXD3 WARS CACNB1 SYT5 ABRACL MT-ND1 CAMKK2 RPL32 SLC1A3 RHOB IFT52 KIF5A MAP7D1 NDUFB10 GDE1 SLC39A10 NAT8L ATP6V0D1 AK5 FIGN KCNAB2 CALM2 PIN1 TSC22D1 DPY19L1 TMSB4X ASNA1 ARL8B PPIA PSMB5 ARHGAP29 TMOD2 KCNV1 GRIN1 NRGN B3GALT2 EGR1 SKAP2 NDUFA4L2 TMEM160 ATP5C1 RNF208 TSPAN7 UQCRB BSCL2 SLC17A6 SLC7A8 FABP5 NDUFB11 NAP1L5 SARAF SELT TSPYL1 ATP1B1 TBR1 APLP2 MED31 FAM219A ARL6IP1 CFL1 C2ORF47 TUBB2A CALM1 MORF4L2 NHP2 PCDHA4 ENSA SCG2 UBE2E3 ITFG1 RXFP1 ATP6V0B KLHDC3 PPP2R2B PDE1A TNFAIP8L3 MB21D2 NUTF2 SLC30A3 KCNK1 SYNGR1 MAP1A COTL1 LRFN3 SSTR2 FXYD6 THY1 EFHD2 C12ORF49 CPNE4 PGM2L1 VDAC3 MTRNR2L6 HAPLN4 NGRN OR6D1P IDS GTF2H2C_2 PCDHGA5 PCDHGA10 PCDHGA6 C18ORF32\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "cortical layer 4 excitatory neuron" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: CALM2 SNAP25 MT-CO3 MT-CO1 VSNL1 CALM1 CKB MT-CO2 CLU MAP1B RTN4 NRGN SLC1A2 ENC1 RTN1 HSP90AA1 MT-ND2 ACTB STMN2 PEBP1 UCHL1 GAPDH SPARCL1 TUBA1B COX7C TUBA1A CADM2 SYT1 CHN1 CPE ARPP19 FTH1 OLFM1 OXR1 TSPYL1 TMSB4X PPP3CA RTN3 SERINC1 CHI3L1 NCDN DPYSL2 CCK RPS15 RAB3B MT-ND4 GRIN1 ACTG1 NDFIP1 MTRNR2L12 MT-CYB PPIA OAZ1 HSP90AB1 TCEB2 YWHAH NGFRAP1 ITM2B THY1 SARAF CREG2 RHEB TMSB10 PSAP TUBB2A GPM6A DYNLL1 PTGDS MTRNR2L1 YWHAB NECAB1 PSD3 RPL32 STX1A CALM3 GLUL TSC22D1 TSPAN7 SLC1A3 CAMKK2 YWHAG SIRPA LMO4 ATP1B1 ALDOA RAB3A SOD1 NDUFA4 PRNP ATP2A2 SRP14 VAMP2 SYT11 APP PRKCB RGS4 SKP1 MYL12B NEFL ATP5B COX4I1 ATP1A1 EIF4A2 GAP43 CEND1 MT-ND1 SYTL2 ATP5J2 MTCH1 CADM3 POLR2I ARL6IP1 ELAVL4 STXBP1 COX5B MT-ND3 PFN2 UBB SYN1 STMN1 GUK1 RPL15 CD59 BNIP3 NEFM PKM TUBA4A MT-ATP6 TUBB4A CLSTN1 GNG3 ATP5G3 RAB7A ATP6V1G2 TPI1 GPR56 BEX2 FKBP1A ANXA6 NAP1L2 PTGES3 ZBTB18 PSMA7 MAPRE2 PINK1 NRCAM SOX9 ARHGDIA CYFIP2 LMBRD2 RAB6B UQCRQ TRAPPC1 ITM2C MED10 GABARAPL2 EIF1B RAB3C HK1 PHYHIP ATP5A1 ATP2B2 MORF4L1 PDP1 MAPK1 VPS35 CSDE1 SERF2 PET100 RAB2A RPL21 C14ORF2 RPL41 CDK14 WSB2 GUCY1B3 NDUFB2 SEPW1 HIGD1A CA11 ATP1A2 ATP6AP1 BEX1 ATP6V1G1 F3 PLCB1 ZFAND5 TOMM7 TMA7 HSPA8 AP2M1 ATP6AP2 PTMA ATP1A3 PEA15 SNRPN SNCG SRP9 RPL13 EIF1 ATP6V1F TESPA1 PRDX5 REEP5 ALDOC TCEAL2 SPCS2 TAGLN3 NUAK1 SNCB TMEM258 DSTN BSG SPOCK1 PREPL CACNG3 SERPINI1 APLP1 VDAC1 FAM127A NELL2 UQCRB ISCU SUMO3 AK5 RHBDD2 MTRNR2L6 TBC1D15 DYNLT3 NREP TBCA PLD3 ENO2 SMS GABARAP RAN RRAGA KCNA1 NCALD MORF4L2 ARPC4 RPL11 CDK5R1 ATP5E RPL37A HEPN1 ITFG1 TCEAL3 CCT5 C6ORF1 CFL1 NDUFB11 SH3GL2 CAMK4 RAMP1 RAP1GDS1 RCAN2 GDI1 TGOLN2 UQCR10 MAPRE3 RPS26 SPTBN1 PTPRS PSMB7 INPP5F GPX4 UBC COPE KIF21A PPP2R1A TPT1 KLHDC3 RPL31 NBL1 CAMK2D HMGCR WDR47 MT3 ATP2B4 KIF3C YJEFN3 CLTA GRM3 SUB1 TNNT2 FAM163B CHCHD2 SLIT1 POLR2J PPDPF NDUFV1 GNG2 RAPGEF5 HOMER1 RPL3 NDUFC1 FKBP8 NDRG4 CAPZA2 ACOT7 LPPR4 CYCS ATP9A POMP FXYD6 RPL36A ACTR1A CRYM BAD SLC17A6 SV2B MZT2B DGUOK HPRT1 SUMO2 FTL BASP1 HOPX USMG5 PJA2 WASF1 SNCA CLTC KCNF1 TOLLIP HNRNPH2 RPL17 PFN1 MLF2 PCMT1 EDF1 GPR26 CHL1 PIN1 SLC39A10 TBCB LANCL1 CHRDL1 SEZ6L2 PTPRZ1 TMEM59L LDOC1 SLC24A2 CRIP2 SERPINE2 SNRNP25 COPS7A PGM2L1 TMOD2 GRIN2A SLC17A7 CTSD PITHD1 RAP2A CDC42SE2 TMEM150C SPRYD3 TMEM70 C14ORF132 ERH TSPYL4 COX6C AES RNF11 PCDH19 NPTXR SEZ6L GABRA1 SLC35B1 MTX3 ENSA WARS CST3 VSTM2L MTPN TXN NELL1 NAP1L5 MAP1A UQCR11 TPD52 ATP5G1 ZFP36L2 NDUFA8 MDH1 RPL38 FBXL16 GPRC5B MPC2 SPOCK2 NDUFA13 MTATP6P1 TPGS2 RP11-111M22.2 MAP7D1 TMX4 UBL5 RPL18A SSTR1 UQCRFS1 NSF MIF NR1I3 YWHAQ ARL6IP5 DMTN PEG10 PRKAR1B HSPB1 H2AFZ NCEH1 C9ORF16 KLC1 GOT1 EIF1AX ELMO1 CHP1 TCEAL7 PGRMC1 SYPL1 CAP2 COPS8 ANO3 CCDC25 ABHD8 KCNA2 DYNLRB1 BCL11B FAM3C SLC2A1 GLRA3 HN1 PDCD5 LDHB LGALS1 ADAM23 OCIAD1 PNMA1 DHCR24 C20ORF24 GOLIM4 MAGED1 RPL6 RBX1 UBE2F NNAT SLC22A17 WBP11 GRIN2C CA10 RPL7 CKS2 SUCLA2 PCDHGA10 PAM CLTB UROD PCSK1N NDUFB8 ATXN10 TTYH2 AHNAK2 UBE2N S100A13 RNASEK-C17ORF49 SHARPIN PNMA2 TOMM20 JUND MARCKS AZIN1 HINT1 CCDC184 PRKCG STX1B PFDN4 SSBP3 SLC25A6 PCSK1 UBE2V2 TOMM70A RAB27B THSD7A FAT3 CCDC115 WBP2 MSMO1 MAGEL2 CNTN1 ATP6V0E2 ZNF423 FBXO8 RPS19BP1 DIO2 OPA1 PHB GDE1 APLP2 PI4KA DNAJB6 DYNLL2 SNX3 PSMC3 PGK1 MAP1LC3A RPL8 VAT1L GADD45B TALDO1 PRDX1 RAP2C NDUFA11 ARL2BP MRVI1 FARSA COX6A1 SDC4 ATP6V1E1 COL5A3 RPL26 D4S234E DIRAS1 RPL39 COX8A PELI3 ARF5 MDH2 BSN NAP1L3 INA FSCN1 CLDND1 COX7A2 GPR37L1 EPHA6 SNAPC5 NEUROD1 TOMM34 SERINC3 BEX4 CDH8 TMLHE NDP ADORA2B NDUFB1 NDUFB7 ATP6V0C RHOC MAP2K4 SEC61G NDUFA12 PPP2R4 TMEM11 COA3 PPP1R9B RAB11FIP5 UBA52 FKBP4 CNTNAP5 COX17 MPP1 NFIA KCNK1 SLC8A2 SCAMP5 RFK SELM TIMP3 MAGEH1 BIRC5 NGEF LINGO1 RAP1GAP2 PDGFRB PEX5L TMEM160 SCN1A HS6ST3 REPS2 NAPA BSCL2 PPAP2B TMEM63A PRRX1 CABP1 RAB40B PAFAH1B2 MFSD6 IPCEF1 TRIB2 AAMDC TPPP IFI6 PGAM1 TMEM130 ZCCHC17 PTPRN2 MLLT11 TM2D3 BANF1 NRN1 ATP6V1B2 RAB37 CDC37 MAP4 UBE2D2 INSIG1 IDH3A HDLBP PRKACB AGT ETV1 MAP2K2 NUTF2 NGRN TMEM191A STMN3 AP1S2 CAPNS1 CAB39 TMEM141 EDNRB CDKN1A MBP WBSCR17 MT1X LIMK1 UHMK1 MRPS21 SSTR2 SYT4 SLC6A1 SCOC SMAP2 C1ORF115 HCN1 KCNH5 CTBP1 FAM84A XAF1 RAB11A CHMP4B STRAP NARS LAP3 CLIC4 TRHDE PITPNA ACP1 EPDR1 EGR1 CD63 EIF4G2 MRFAP1 FGFR3 SH3BGRL3 NUDT4 MLC1 SLC6A17 PPA1 APBB1 CDS1 RPS12 FAIM2 VAPB FAM189A2 MAGED2 MAP7D2 JUN NME1 TMTC1 UQCRC1 SLC12A5 BCAS2 MRPL20 YWHAZ SDCBP DEXI PPP2R2C RABAC1 GTF3A ACTR10 WLS ACLY ESYT1 COX6B1 WASL SCN3B PSMC5 SYN2 PSMD8 NPTX1 NMNAT2 GABARAPL1 KIF1A GNAQ RPS2 RSL24D1 MTG1 UBQLN2 SIGIRR FGF12 DKK3 PPP2CA DRAP1 IFT52 ST20 EID1 AQP4 CLIP3 TLN2 KIFAP3 EPB41L3 ZFP36 ATP5J UBE2E3 C3ORF80 PEBP4 MYEOV2 ARL4C TBR1 PFKP LZTS1 GDA RPH3A RTN4R NFE2L1 GRM8 MGST3 DPY30 NDUFS5 SLC25A22 SLC9A6 HMP19 MAP2K1 LDB2 RAD23B KCNV1 GHITM RNF181 SYNGR1 S100B LAMP5 MCHR2 HMGCS1 QDPR FAM19A1 NAA38 ATP1B2 SUMO1 FIS1 NDUFB5 ZNF365 RPL35 MAPK8IP2 FUNDC1 CMPK1 TMEM65 COTL1 C7ORF50 PEPD SYNPO MED31 DCLK1 MRPL47 EPS15 UQCRH RP11-20I23.1 PTPRN PRDM8 CDK17 OLA1 CDK5 RORB USP5 TSC22D4 ABRACL MTRNR2L8 HSPB8 VSTM2A ARFGAP2 TUBB3 IDS PSMB3 RAB13 TUBB\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "cortical layer 4 excitatory neuron" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: SYT1 SNAP25 MT-CO1 MT-CO3 MAP1B ENC1 CALM1 CALM2 CHN1 MT-ND4 RTN3 MT-CO2 RTN1 TMSB4X TMSB10 ARPP19 NRGN MT-ND2 GAPDH ATP1B1 VSNL1 PRKCB TUBB2A RTN4 YWHAG STMN2 ACTB SEPW1 TUBA1B HSP90AA1 NGFRAP1 FTH1 CALM3 PEBP1 RAB3B CLU MT-ND1 SLC39A10 NPTXR NAPB PRNP THY1 CKB PRKACB TUBA1A KLC1 GPM6A GDI1 ATP6V1B2 PREPL PGAM1 SARAF SERINC1 YWHAB CPE VAMP2 OLFM1 TSPAN7 NECAB1 PGM2L1 STMN1 DPYSL2 MT-ND3 MTRNR2L1 SLC17A7 BASP1 YWHAH MT-ATP6 STXBP1 IDS NRCAM APP BEX1 TSPYL1 MORF4L1 SCN3B REEP5 ATP6V1A ACTG1 SNCA YWHAZ DCLK1 ITM2B PSAP SERPINI1 SPARCL1 HSP90AB1 ITFG1 TMX4 TPI1 ARF5 APLP1 SYN1 SERF2 GHITM DYNLL1 SYN2 PTPRN ATP6V0E2 GDA HMP19 MAPK1 NDRG4 PRKAR1B CHGB PJA2 PLD3 ARL6IP1 PKM SNRPN ATP6V0C PLCB1 CFL1 CREG2 SYT4 GNAQ BNIP3 OXR1 EIF1 AP2M1 LMO4 CLSTN1 CCK RP11-20I23.1 PSD3 C14ORF2 RGS4 TUBB4A MT-CYB CLIP3 RPL41 CADM2 TBC1D15 SRP14 CEND1 MAP1LC3A MTCH1 CTNND2 UCHL1 PDP1 CNTN1 SERINC3 SUB1 CDK5R1 NDUFB8 SNAP91 NEFL MTRNR2L12 COX6C GABRA1 ENO2 NDFIP1 ALDOA FTL NELL2 EFR3A RP11-111M22.2 ATP1A3 CAMK4 ARF1 RAB6A RAB3A BSN MTATP6P1 AK5 TAGLN3 FAT3 HMGCS1 DNAJC6 CLSTN2 TMEM59L TSC22D1 SOD1 TCEB2 FXYD7 FAIM2 WBP2 TPPP PPP3CB ATP2A2 NDFIP2 EIF4G2 PPP2CB KCNV1 NAP1L2 RAB3C KIF3C KIF1A PFKP ANAPC11 RPL38 PACSIN1 RPL37A SPOCK1 ATP5I GRIN1 RPL31 NEGR1 SLC22A17 DKK3 PPIA PGRMC1 COX7C OAZ1 SLC24A2 MAPRE2 LPPR4 PRKAR1A CAP2 SYNGR1 SCG2 NAP1L5 RAB2A RHEB NDUFS5 GRIN2A RPS15 HINT1 DSTN STMN3 HTR2A PPP3CA SV2B MLLT11 RANBP1 PNMA2 SYTL2 MAP4 WASF1 ARF3 UQCR10 IDI1 C11ORF31 CA11 PIK3R1 UBC UBE2V2 ATP2B2 GUCY1B3 PPP2R1A NSF MAP2K4 DIRAS2 RPL13 PCSK1N ATP1A1 CYFIP2 HMGCR PCP4 GRINA MTPN SNCB ATP9A TGOLN2 MRAS OPCML CHL1 CDC42SE2 PHYHIP CAPZA2 EIF4A2 SULT4A1 HPCA KIF21A CAMK2D COX4I1 TOLLIP SCD5 SNX10 UHMK1 MDH1 SLC30A3 CCDC85B BEX2 TBCA SPTBN1 HOPX ZNF385D SSBP3 PSMC3 SLC12A5 MGST3 ZFAND5 DPP6 TRMT112 PGK1 UQCRC1 KCNC2 ATP5A1 YAF2 NCAM2 CYCS C14ORF132 ACOT7 APLP2 ATP6V0B ATP5J EID1 NCALD NCDN FKBP1A SCOC NDUFA4 PFN2 KCNAB2 TERF2IP GAP43 TRIM37 PI4KA PPM1A RFK COX6B1 WARS AP1S1 MTRNR2L6 UBA1 AZIN1 TUBA4A COX6A1 RPL13A GUK1 RPL15 CAB39 OCIAD1 RAB1A PCDH19 EIF1AX RPL3 GPR158 PPP1CB SH3BGRL3 PTMA FXYD6 NTNG1 FBXO2 BIRC5 WDR47 SH3GL2 VDAC1 UBQLN2 UQCRQ SNCG PDE1A PAFAH1B2 RAP1GAP2 PNMAL1 NCEH1 EDF1 MFSD6 EPB41L3 STMN4 VPS35 ARL8B FAM3C RAPGEF5 FGF12 DYNC1I1 C1ORF52 SYT5 ZBTB18 CADM3 PPP2CA RPS3A PEA15 BAI2 UBE2QL1 TOMM7 ANO3 ATP6V1C1 NDN COX7A2 NREP FAM163B RPL8 PPP2R2B TMA7 SPRYD3 SELT RPL7 ATP6AP2 PPP3R1 B3GALT2 RHBDD2 OXCT1 LMO3 TUBB4B CHMP5 PINK1 ISCU RABAC1 LSM4 GOT1 MZT2B BSG DIRAS1 MED10 ATP5G3 TMOD2 GNB1 STX1A WASL PPP2R2C POLR2I PIN1 PCMT1 SIRPA UQCRH SLC9A6 BSCL2 NDUFA13 NR1I3 FAM127A MT3 PSMA7 TXN GABRA5 CLTA C1ORF115 CTNNA2 PSMD8 C2ORF80 PRKCE TOMM20 YWHAQ SLITRK1 RASGRP1 NDRG3 ELMO1 PSMB7 UQCRB PRDX3 TCEAL7 NEFM CLTC C9ORF16 SMIM13 NIPA1 TMEM70 AKAP12 ETV1 MAGED1 DNAJC5 REEP2 COX5A NUDT4 CTSD CLIP2 COX14 EPHB6 RXFP1 ATP6V0D1 CPLX1 WSB2 RPH3A MT-ND4L RAB27B SLC6A17 TCEAL3 PRDX1 ERH ATP2B4 BEX4 UBE2N SYNJ1 ANXA6 AES SAP18 PRUNE2 RPL21 ATRN MAP1A GNG3 MLF2 RAB6B UBA52 FSCN1 FABP3 RPL32 MAP1LC3B SCAMP5 PHPT1 OAT GLRA3 MRFAP1 HIGD1A RPS10 JUND SLIT3 RPL35 LANCL1 FABP5 GPX4 NDUFA1 COL5A2 CDK17 SEZ6L2 NDUFV1 PET100 SYT13 MT-ND5 ARHGAP35 RPS28 ATP5B DYNLRB1 USMG5 CNRIP1 GUCY1A3 PCBP1 ELAVL2 CERS6 ACTR1A NAPA ATP6AP1 VDAC3 RAP1GDS1 BRK1 MAST3 MIF DDN GMFB LDB2 GABARAPL1 RNF11 NRN1 LYNX1 ACTR10 LINGO1 HCN1 CABP1 ARL4C UBB TUBB3 RNASEK-C17ORF49 RAP2A TPT1 SPARC ATP6V1F LMBRD2 LRP1B CAMKK2 TBCB APBB1 MYL12B CTNNB1 PLS3 KCNA2 PPA1 RPL11 ZNF365 TPD52 FAM134A MTRNR2L8 RP11-195F19.5 FIBP ROBO2 PTPRS NNAT C6ORF1 PRDX5 SLC8A2 LINC00086 PAM RORB STUB1 SNX3 INA SCN1A GNG2 TKT RAD23B TRHDE TSPYL4 OPN3 MAP2K1 RPL10A SMYD2 NKIRAS1 CDH8 PFDN1 MRPL33 QDPR CHMP4B KRAS DHCR24 JAKMIP1 NPTN MAOB RBX1 ENO1 RPS4X CDK14 ENSA CTBP1 NDUFB7 ATP5E SSTR1 PTGES3 FJX1 PRKCG CDK5R2 SNN GPX3 MPPED1 SPOCK2 RAB11A NMNAT2 PRDX2 ENOPH1 MYL6B RPS19BP1 NPTX2 PSMD12 VSTM2L BAG4 USP5 LDOC1 ELAVL4 NDUFA5 NUAK1 WBSCR17 AP3S1 NDUFA12 GSTO1 ADORA1 NGEF MAP7D2 SUMO2 ACTR6 CSDE1 NDUFS6 C19ORF53 CAPNS1 BEX5 PCSK1 TPRG1L SLC38A1 MYL6 MAGED2 COL11A1 HDLBP MARCKS ID2 HSPA8 NARS CADPS2 DMTN MORF4L2 ALG3 VDAC2 FBXL16 EPDR1 PIP4K2A MDH2 ATP6V1E2 ADD2 KCNMB4 RPS26 KIAA1045 DDAH1 ARL8A ETFB DLD HPRT1 HOMER1 UQCR11 HNRNPA1P40 RPL17 RPL17-C18ORF32 ARFGAP2 TUBB MTND1P23 AC244489.1 NCBP2-AS2 LAMTOR1 DYNLT3 MRAP2 TESPA1 SUMO3 NACC2 PTCHD4 DNAJA1 C4ORF3 SLC25A4 ATP5O NUDT21 PDCD5 LHFP LIMK1 NOP10 ATOX1 GLIPR1 ITM2C RCAN2 SYT3 IPCEF1 MRPL55 INPP5F FUNDC1 SNRPE PRDM8 EDIL3 RPS6 SEC61G MRPL51 PAK1 FIS1 NHP2L1 CBX6 PPDPF SYT11 SLC1A2 RAB7A MAGEH1 FAM174A TMEM130 GDE1 PFN1 AP2S1 DNM3 NBL1 TUSC2 COA4 SUMO1 NPTX1 PTHLH MPC2 COX17 ANXA7 KCNF1 PRSS3 SCN2B COMMD6 MYEOV2 OPA1 FAM19A1 ARHGDIA CALN1 TCEA2 TM2D3 OLA1 CDC37 TMEM117 INSIG1 EPS15 GPR56 WBP11 CMPK1 PTPRM PTPRT CCDC115 HK1 LRFN3 CLTB ATP5C1 VEGFA SKP1 POLR2L GORASP2 ISCA1 TMEM160 DCTN3 CCDC25 CHCHD2 LYSMD2 RPL12 ATP6V1G1 FKBP8 UBL5 ATP6V1G2 PSMC5 STRAP CTXN1 EHD3 PEX5L SERPINF1 CDKN2D PNMA1 HSPA4 STK39 NDUFAF2 SYT17 PNMAL2 RNF181 KCNAB1 PRELID1 TBR1 UQCRFS1 DNAJB9 COQ10B TLE4 MAL2 NELL1 SAMM50 CRIM1 NFE2L1 MAPRE3 TMEM14A RAN TCEAL2 PHYHIPL TEX2 MRPL20 SLC25A6 UBE2M COX5B UROS IQSEC1 SQLE SUSD4 AGA YJEFN3 LAGE3 TOX ELOVL7 GPX1 PMEPA1 HDDC2 OST4 BAALC DBNDD1 EFHD2 DCTN1 ASAP1 MSMO1 UBE2E3 NDUFA8 SYNPR CX3CL1 B3GNT1 PSENEN GRM3 KIF5A FRMPD2 TCEAL5 COPG1 SNRNP25 SMS FASN PDLIM5 MYRIP NDUFA2 RPS27A SLC25A11 RPL39 CRYM NAT8L PEF1 TMEM258 CNTNAP5 POMP LAP3 RRAGA ATP5G1 RASGRF1 CA10 MMD NDUFA11 AURKAIP1 NDUFB5 PCDHB2 LDHB CD59 RPL26 TF MBOAT7 NGRN TMTC1 COX7A2L COX7B GOT2 MORN2 KLHDC3 TENM1 GLO1 COL21A1 GYG1 MCHR2 CYP26B1 SRR CNIH3 CLPTM1 CETN2 GRB14 TIMP2 SMIM12 PITHD1 CNTROB MRPL37 ZBTB39 C19ORF43 CBLN4 PVRL1 MARCKSL1 CST3 AP2B1 TNFAIP8L3 GTF3A EXTL2 CORO2B SLC9A9 NDUFAB1 TMEM191A PEX11G MAPK8IP2 SDC2 CCDC184 CFL2 CDH13 PSMD2 RHOB PNKD LAMTOR2 NDUFB3 CYC1 SPCS2 TMEM155 CYSTM1 RAB40B NRAS DPY19L1 ADAM23 NRSN2 C3ORF80 NOV RPS5 TMEM150C CYP2R1 KLF2 MYBPC1 SUCLA2 NDUFB10 ETV5 SCAND1 RSL24D1 RRM2B IL15RA KITLG TALDO1 PAQR9 TSPAN33 SLC7A8 APOC1 SLC9A3R1 GADD45B CPNE8 SYNPO C1QBP SHC4 TLN2 PODXL DGKG FBXW11 TEX40 PIP5K1B SERTM1 CARD16 DUSP6 SPRTN TMEM35 ARHGDIG CDS1 TMEM65 FAM219A BMPR1B EGR1 SPON1 KLC2 SDF2L1 NUTF2 ATP5H GABARAPL2 PITPNA WNT5A TMEM147 COPS8 ASAP2 MRPL12 ETS2 NDUFB2 PARM1 EIF1B ZMYND12 RNF208 OTOA SRD5A1 CTC-535M15.1 RPL18A CLDND1 RP11-632C17__A.1 FSTL5 ABRACL ADAMTS9 LAMTOR5 SPHKAP NAP1L3 DNAJB6 NEUROD6 C12ORF57 IGSF21 HNRNPH2 GBE1 CDH7 NEUROD2 GPR68 ACP1 ZMAT2 GRIN3A GSKIP TPGS2 ADCYAP1 CNR1 REPS2 CYB5R3 TXNDC17 DYNLL2 MFGE8 PLCH1 LL0XNC01-16G2.1 PRKD2 HEY1 PDGFRB ZNF343 ANAPC13 C16ORF93 ARSJ CACNG3 CAMK2G ATXN10 MANBAL PPTC7 DRAP1 JUN MAP7D1 MRPL47 RASGRF2 STX1B ARPC4 GSK3A IMMP1L OLFM2 PTK2B VSTM2A PLCXD2 ONECUT1 NTN4 FAM131B ARPC5L SKAP2 FAM149B1 SLCO4A1 MB21D2 ADSS THOC7 VAPB MRPS21 CD63 PSMB5 ACLY ESYT1 CACNB1 COPS7A TP53I3 NDUFB1 MLC1 ANKDD1B PEG10 NRF1 ATG101 SLC38A11 TRIB2 KLK7 COA3 MED31 TRIM36 NME1 ALCAM SLIT1 PTGDS HCN2 UBL4A PSMB3 HN1 CCT5 OPRM1 ALDOC TCEB1 ISG15 C19ORF70 HRH3 RAB4A LRRIQ1 SCN1B NDUFC2 RGS12 ARL2BP COX8A CRIP2 GSTP1 SEZ6L TMEM151A GNG5 CAPZB CISD1 CXXC4 SPRN EGFL7 HRASLS5 HS3ST4 DGUOK ATP6V1E1 HSPB8 BRINP3 MIEN1 SNX17 CMAS VGF SRM C16ORF13 ALDH5A1 LMBR1 SH3RF1 FAM19A2 TMEM158 COL12A1 UBE2F CHP1 SYNGR3 RAB31 GSTT1 NDUFB4 BCAS1 NDUFB11 HS6ST3 CDKN2AIPNL KAL1 SLC24A3 NEK7 IDH3A AQP10 GRPEL1 ATP5F1 CPLX2 PTPRZ1 S100A6 HHATL RHOA ARHGAP24 NR4A1 LINC00087 PPP1R9B C2ORF47 PCDH17 MAP2K2 FAT1 RTN4R RTBDN ACAT2 D4S234E GABARAP IFI6 PTPRN2 ZNF503 BANF1 SV2C YIPF3 COL6A1 MFN2 ASNA1 SMAP2 VWA1 CAMK2N2 MIR6723 LINC01296 RPL36A C18ORF32 PCDHAC1 PCDHA10 PCDHA9 PCDHA4\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "cortical layer 4 excitatory neuron" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MT-CO3 MT-CO1 MT-ATP6 MTRNR2L1 IDS MT-ND2 MTRNR2L12 TSHZ2 FTH1 MT-ND3 SNAP25 ATP1A1 MT-CYB NDUFB8 RAB3B SYTL2 PNMA2 SYT1 ATP6V0E2 MT-ND1 SLC22A17 OAZ1 CHN1 RORB PLEKHD1 MT-CO2 CLSTN1 PDP1 RTN1 NPTXR LINGO1 PCSK1N BIRC5 EIF1B EIF4A2 ARHGDIG TTN ARL6IP1 RPL37A UQCRC2 GUCY1B3 ANO3 NRGN CBX6 RPL13A VGF LMO4 RPS27A CDK5R1 NMNAT2 GNAQ MTATP6P1 CPNE4 MT-ND4 PPP1CB NUAK1 HK1 MME CALM3 DPYSL2 RAPGEF5 STXBP1 MTRNR2L6 PRKACB ISCU RPL6 SLC12A5 LMO3 RP11-20I23.1 ATP6V0C ATP1B1 NARS NAP1L2 PCDHB10 PCDHGA5 SCAMP5 PREPL ACTB OPCML SYN2 MYL6B MAP1B SPARCL1 CDH13 NAPA RELN ATP5E TIMP2 NEFL CDC42SE2 COL6A2 KIF5A SLC25A4 ATP2B2 CDH8 CHP1 RPL13 TOMM7 CAMKK2 OCIAD1 UBB DCTN1 ZBTB18 GPR98 SYNGR1 SLC9A6 PITPNA CALM2 VAMP1 APLP1 VIPR2 PEF1 APLP2 PGK1 VAPB CALM1 ZFAND5 MTRNR2L8 CABP1 RPL32 TM2D3 MYRIP RPS15 ENC1 CLTC GNG3 OLFM1 KIF1A CTBP1 SOD1 SH3BGRL2 GCH1 RAB7A PAK1 TMEM130 AES COBLL1 BSG PPP3CB FAIM2 RAB3IP TRIB2 PIK3R1 SEMA4G GPM6A EPS15 CORO2B NRCAM BEX4 KCNV1 FSTL5 ID2 PSMD12 NDFIP1 CCDC69 MSMO1 RHEB APP YWHAG RPL15 RAB3A PCYT2 SMIM13 ATP5O SKP1 HDLBP CYCS NREP BAI2 COL12A1 CREG2 ATP5B COX5B ITFG1 PTMA PRDX1 TCEAL5 RPL41 DIRAS2 NEUROD6 MORF4L2 RP11-111M22.2 CRYAB NECAB1 NFE2L1 PGRMC1 RSL24D1 NELL2 NDUFA13 NEGR1 BAALC NAP1L3 TMX4 FBXL16 TPGS2 CMAHP CNR1 NUDT21 PFDN1 CCK DGKG RPL31 MAP4 WDR47 HTR1F TCEAL2 PPP2CA SLC39A10 TUBA1A SCN3B ABI3BP TUBD1 DYNLL1 HSP90AA1 SLC7A1 RPL8 SARAF WASF1 YWHAB PARM1 PJA2 TBR1 SRP9 MAPK1 RAMP1 CNIH3 BAG4 MAPK8IP2 TSPYL4 ARF1 ACTG1 CAP2 CPE RTN3 WBP2 TLN2 RAB4A INPP5F RPL26 HSP90AB1 C14ORF132 PSD3 STMN1 RPL21 ATP6AP1 APOLD1 RPL17-C18ORF32 NSF RPL17 NGRN SERPINE2 PCDHA10 PCDHA4 PCDHA9 PCDHAC1 GTF2H2C_2\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "cortical layer 4 excitatory neuron" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: SYT1 SNAP25 RAB3B SERINC3 SLC12A5 MAP1B CALM1 USMG5 EPHB6 SCN1A RP11-111M22.2 PTCHD4 PPP3CA STMN1 RORB ACTB CKLF SLC24A2 HAMP GPM6A RPL7 BAI2 SPARCL1 TMEM59L ATP2B2 SCN3B CHN1 PSAP THY1 UCHL1 STX1A RTN3 FAIM2 SIRPA NPTX1 SNAP91 BASP1 NOV GPR98 TSPAN7 SCAMP5 ATP6AP2 PSD3 PGM2L1 BIRC5 ZFAND5 B3GALT2 SCD5 C1QBP SMYD2 MPP1 HCN1 CX3CL1 NRGN SLC8A2 GHITM PRSS3 TMA7 FAM134A KCNAB2 ASPDH CCK MORF4L1 PJA2 NACC2 HS6ST2 NDUFA4 ATP1A3 CREG2 RPL39 SERF2 CAPZA2 PPP3R1 PIK3R1 CLU APLP2 NGEF YWHAB CDH7 RPL13A SULT4A1 STMN2 CDC37 CRYM RAN GABRA5 MT-CYB IDH3A COX7B MT-ND4 SLC22A17 SELT ATP6V1B2 RPL32 ARL4C PPP2R2C VEGFA HAPLN4 UBA52 PRKACB TOMM7 CPE NAP1L2 NRCAM OAZ1 WBP2 RELN SSTR2 NDFIP1 PRKAR1B TMSB10 CDKN2D ELAVL2 TRIM37 PDE1A NELL2 EXTL2 UBE2N DYNLL2 SEPT4 GABRG1 SARAF EIF4A2 RPL6 SNRPN CCDC121 ASB13 PCDH8 PGAM1 THSD7A UBE2QL1 NCEH1 RNASE1 SDCBP CAMK2G KCNC3 NUDT4 MAP4 UBA1 LMO4 SOX9 STXBP1 ENO2 FBXL15 ANLN ATP6V0E2 PINK1 IDS YAF2 RPS28 SUMO2 BSCL2 CBX6 STAG3L5P TMEM130 RPL3 TSPYL1 COX17 SLC38A1 YWHAZ HSP90AB1 MARCKS EPB41L3 NDUFA5 TMX4 SMS MT-ATP6 EID1 MGST3 DKK3 MYRIP GAPDH CABP1 GUCY1A3 PITPNA ZNF536 NDRG4 TMEM155 NDUFA13 RASGRF1 GPR56 ATP5B TBCA MAPK1 INPP5F DPP6 COL11A1 OPALIN MT-CO1 MPPED1 COL6A1 NELL1 CLPTM1 DCLK1 ARL6IP5 EFR3A ATP1B1 KLC1 NDUFA11 RGS4 MTX3 NPTXR CHGB CKB WASL SYT4 TMEM35 NDRG2 CALM2 HILPDA PPIA STMN3 ARL6IP1 MDH1 BRK1 TGOLN2 MYL12B GABARAPL1 SEC61G TUBB3 RP11-20I23.1 LINC01296 GPNMB NSF ATP6V0C\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "cortical layer 4 excitatory neuron" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MT-CO1 MT-CO3 SYT1 MT-CO2 SNAP25 CHN1 MT-ND4 GPM6A MAP1B MT-ND2 MT-ND3 MT-CYB CALM2 CCK RTN4 CALM1 SLC17A7 RTN3 VSNL1 PPP3CA NPTX1 ARPP19 CAP2 RTN1 ENC1 PRNP PRKCB NPTN NRGN YWHAG TUBA1B MT-ATP6 ATP2B2 SYN2 PREPL NECAB1 PPIA SPARCL1 PNMA2 LMO4 HSP90AB1 SERINC1 CLU TSPAN7 AK5 YWHAH ACTB ZFAND5 CNTN1 MT-ND1 PRKACB SLC9A6 RGS4 IDS ATP1B1 MTRNR2L12 ARL6IP1 ACTG1 ATP6V1B2 NGFRAP1 OLFM1 PJA2 CDK5R1 EIF4A2 MTRNR2L1 CLSTN1 GDI1 CALM3 DPYSL2 MTATP6P1 APLP2 CADM2 YWHAB TSPYL4 FTH1 GUCY1B3 APLP1 ENO2 DIRAS2 SLC39A10 NCALD PKM VAMP2 TSC22D1 THY1 RHBDD2 NUAK1 ATP1A1 SPOCK1 CREG2 STXBP1 NAPB MAP2K1 SNCA PEX5L BSN YWHAZ KIF3C PHYHIP APP BEX1 NDFIP1 SCN3B SPTBN1 WASF1 MAPK1 DNAJA1 TMSB4X LPPR4 AP2M1 MT-ND4L DCLK1 SARAF RPS15 STMN1 OCIAD1 NUDT4 NPTXR LINGO1 MTPN DKK3 TPI1 TESPA1 OAZ1 GNAQ TSPYL1 PPP2R1A GAPDH FXYD6 CLIP3 NGRN DNAJB6 NCAM2 CHL1 TMEM14A MTRNR2L6 CKB CDC42SE2 RASGRP1 PIK3R1 DPP6 CAMKK2 TUBB2A MT-ND5 PI4KA PPP3CB CABP1 FAIM2 EFR3A CLTC SYN1 PDP1 NRCAM ATP6AP2 DYNLL1 SNCB BSG SERPINI1 TPD52 TERF2IP SUB1 HSP90AA1 GABRA1 ETS2 GAP43 STMN2 PLCB1 PRKAR1A NDRG4 SNRPN TOLLIP PFN2 TBC1D15 CFH PGM2L1 ATP1A3 SYT4 CYFIP2 PPP1CB CDK14 SV2B SCG2 TMEM130 SLC24A2 ID2 MAP4 PDE1A ELAVL2 NGEF ATP6V0E2 ZNF365 OXR1 TUBA1A TMOD2 BASP1 MAST3 ATP6V1A KIF5A SLC12A5 RNF11 ATP2A2 CAMK2G INA PCDH17 TUBB4B NSF SNAP91 CERS6 FKBP1A GUK1 SELT PEBP1 CDK5R2 PSAP PPP3R1 PTK2B CPLX1 ATP9A INPP5F KIF1A FKBP8 SYNPO SYTL2 ENSA CAPZA2 TOMM20 CDKN2D PPP2R2B RPL37A MLLT11 CTXN1 TMEM155 PSMD12 C1ORF52 NDUFA5 RAB3C RLIM C1ORF115 GNG2 MTRNR2L8 COPS8 SEPW1 GRIN1 POLR2K CLIP2 LDB2 ARF3 PTMA SSBP3 MAP1LC3B CX3CL1 MAGED2 DMTN RABAC1 TMEM59L NDFIP2 JUND AP1S1 SOX4 MAPRE2 PRKAR1B TBCA KIF21A RPL26 HMGCR PPP2R4 VAPB VPS35 OPA1 TRIM37 DACH1 PEG10 TPPP PSD3 RPL38 SLC7A1 BRICD5 UBQLN2 CPE RAP2A HOMER1 KLC1 PGK1 B3GALT2 PPP2CB COL24A1 GNB1 RPL32 PGRMC1 SULT4A1 EIF1AX LMO3 PGAM1 NDUFC2 SERINC3 SH3GL2 TMEM65 CRIM1 CAMK4 PAM PHYHIPL RPH3A TMX4 FIGN STX1B NFIA OAT ATP5J2 ATP6AP1 RAB2A MDH1 SLC22A17 CTNNA2 UBA1 SCAMP5 FAM127A GABARAPL1 PAK1 PITPNA NAP1L2 CPLX2 HK1 GNG3 ATXN10 ROBO2 BDNF DNAJC21 MAP7D2 C14ORF2 ADSS CISD1 MKX RP11-195F19.5 KCNAB2 PFN1 COX7A2L ETV5 RAB6B EIF4G2 FXYD7 NAPA PACSIN1 NAT8L LMBRD2 CDKN2AIPNL HMGCS1 CCDC85B SYT11 UQCRC1 MYL6 TUBB4A ARHGAP35 NDUFS5 UHMK1 CD59 CACNA1H STMN4 MYL12B ETFB BEX2 CACNB1 CA10 CMAS EIF1B PSMC5 CAB39 NRN1 BTBD10 SNAPC5 LYSMD2 FLOT2 SEZ6L2 C16ORF13 TENM3 BAALC PSMD8 COX6A1 USMG5 VDAC1 HS3ST2 SUMO3 PCBP1 SPRYD3 LAMTOR5 PPP2CA AZIN1 CTBP1 STMN3 AP3S1 WBSCR17 REEP2 RPL31 RBX1 IQSEC1 TAGLN3 ACOT7 ADORA1 ITM2B CHGB KCNK1 TGOLN2 PCMT1 SLC7A5 VSTM2L ATP5B YWHAQ RP11-20I23.1 RASGEF1B SKP1 DNM3 ANO3 JUN ADCYAP1 EHD3 UQCRFS1 LINC00116 WBP2 NEFL HEY1 IGFBP5 GSTO1 CFL1 TPRG1L RHEB CADM3 VDAC3 PRKCE CRIP2 FSCN1 OPN3 CHMP5 BCL11B STK39 ITFG1 TM2D3 C19ORF70 KCNMB4 KIFAP3 SMYD2 HPRT1 UCHL1 SLC1A2 ARHGDIA PEA15 KRAS ATP6V0C MGST1 HCN1 BCAP31 AP2B1 NDUFA13 TOMM7 TMSB10 ENOPH1 ATP5G3 SOD1 PPM1A MAP2K4 SLC38A1 SPOCK2 APBB1 RPL13 PTPRN2 PFKP VGF GRINA SNCG CSDE1 SLC6A17 SLC30A3 NAP1L3 SCN2B STX1A NUDT21 RPL15 FAM163B SMIM12 HNRNPH2 MB21D2 SLIT1 IPCEF1 HS6ST3 RPS26 STK24 CMPK1 CHMP4B ELMO1 MAL2 ZBTB18 IDI1 LINC00087 COX7A1 RAB3B ZNF385D COA3 NCOA4 B3GNT1 UBE2QL1 MRPL33 NAP1L5 FBXL15 ARF1 SMIM13 GRIN2A CAMK2D IDH3A CLTA POLR2I KCNC2 PPP2R2C LZTS1 RPL3 AP2S1 RAB9A TMEM11 HTR4 SHARPIN ARL8A ENO1 RPL23A THOC7 ATP5A1 DYNLT3 RAB27B BNIP3 RPS12 COX14 TMEM70 HSPA8 NCEH1 COX4I1 LAGE3 MFSD6 SERP2 SYNJ1 TM6SF1 PAFAH1B2 LMBR1 RAPGEF5 RPL36A RP11-111M22.2 SNX3 SLC9A1 ANXA6 NPAS3 NELL2 NDUFB8 TKT MPPED1 PAQR9 PTPRN RHOB NRAS TMEM150C ELAVL4 CPNE4 ATP5J TCEB2 HCN2 EPDR1 RPS3A MBP DYDC2 CACNG3 RAD23B PLD3 MRAP2 ARPC5L EGR1 CYSTM1 PPDPF NDUFB1 MZT2B CA11 SRP9 ATP5E KLF2 CDHR1 EID1 DDN BEX4 NDUFA1 NDUFC1 RORB EPB41L3 ATP6V1G1 RAB40B KCNAB1 MORF4L1 SEMA3A RRAGA MPC2 SLC8A2 PTGES3 C9ORF16 SALL2 KITLG SCOC KLHL12 CPNE8 CLEC14A NFE2L1 ATP5O RAB3A CRKL RAB1A PIN1 NTNG2 ACLY WBP11 ATP5G2 C19ORF10 TMEM141 CAPNS1 VAMP1 CLSTN2 SIRPA ARPC4 D4S234E EPS15 KCNA3 NREP PARM1 TEX2 SYT5 RHOA PLAC8L1 CDH22 HTR1F SUMO2 C1QBP SNN NEFM UQCR11 NIPA1 IL33 SSTR2 SEZ6L LSM4 YAF2 CDC37 PINK1 DYNLL2 ZMAT2 CLDND1 KLHDC3 TCEAL2 KCNA1 RASGRF1 PVRL1 CCDC184 DCTN1 TEFM TNNT2 JAKMIP1 DYNC1I1 RAB7A KCNA2 SCN1B ACTR10 OST4 FAM3C MUM1L1 UBE2E3 RPS10 YJEFN3 GFRA2 TMA7 ARL8B GLO1 UBL4A PTGS2 ARL6IP5 TCEAL5 BCKDHB EFHD2 ATP6V0D1 FAM198B ISCA1 FIS1 EXTL2 RPL6 MRPL12 SUMO1 C1ORF95 ZBTB39 CCT5 RPL35 GHITM ARHGDIG EGFL7 NDUFB7 PELI3 SPDL1 ATOX1 CTSD MAPRE3 TALDO1 MAP1LC3A RELN HTR2A KIAA1024 CDH13 RASL11B WASL LYNX1 ADD2 LIMK1 CLPTM1 KCNC3 C7ORF50 MSMO1 MORF4L2 SPCS2 GPR37 GDA RAP1GAP2 DNAJC6 KIAA1045 SMAP2 S100A6 SLITRK1 PID1 PRDX5 RAB6A SUSD4 PFDN1 HHATL HBA2 FAM131B ASAP1 RPS28 C4ORF3 NNAT PSMA7 OLA1 TBR1 ALDOA TENM1 TUBB GRIK3 PRDX3 PTPRS CADPS2 CD99L2 COPRS NDUFA12 UROS CDH8 SNX10 PGD COX7C NEGR1 GUCY1A3 SYNGR3 MAPK8IP2 BSCL2 CDK17 COPE SAP18 NRSN2 RPS2 CNRIP1 NDRG2 ATP2B4 PRDX2 TOMM70A FAM134A MLF2 NHP2L1 PNMAL1 SERPINF1 PCSK1N RPS5 REEP5 MTCH1 RAB11FIP5 SLC39A3 UBL5 GABRG1 UBB CTNND2 UBE2N MAP1A DNAJC5 RCAN2 GPR88 NWD2 IGSF21 PDZRN4 ZNF425 MRPL47 C12ORF49 ARL1 SYNGR1 AES DDAH1 CRYAB RFK MMD TPT1 ACP1 SEPT4 SMS KCTD9P2 CEP72 STUB1 FBXW11 ST6GALNAC3 PSMD2 EDF1 NPTX2 RP11-219A15.1 ATP6V1G2 RNASEK-C17ORF49 GABARAP TUBB3 GTF2H2C_2 MBOAT7 AC244489.1 PCDHGA10 PCDHGA5 PCDHGA6 PCDHA9 PCDHA4 PCDHA10 PCDHAC1\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "cortical layer 4 excitatory neuron" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MT-CO1 MT-CO3 MT-ND4 CHN1 SYT1 RTN1 LMO4 MT-ND2 CADM2 ATP1B1 MT-CO2 RTN3 SEPW1 RTN4 MAP1B MT-ND1 CALM2 RP11-111M22.2 SNAP25 CCK STXBP1 TSPAN7 TMSB4X PTPRT CALM1 GPM6A PGM2L1 NUAK1 NECAB1 DPYSL2 BIRC5 RAB3B SYTL2 ITM2B GAPDH OLFM1 HSP90AB1 APLP1 PRKCB ARL6IP1 GABRA1 CLU KIF1A TRHDE TUBA1B NDRG4 RORB HSP90AA1 ACTB TSPYL1 NDFIP1 TMSB10 VAMP2 TUBA4A SV2B PPP3CA PET100 NAPB PRNP EFR3A NEFL PSAP ATP9A SLC38A1 FTH1 COX6B1 DPP6 NAP1L2 SERPINI1 NGFRAP1 GOT1 ATP5I NRGN SPARCL1 ARFGAP2 TOLLIP ACTG1 ATP5B CLSTN1 TSC22D1 UQCRC1 SLC22A17 COPS7A LL0XNC01-16G2.1 WASF1 EXTL2 RPL35 OR6D1P STMN4 PTMA CALM3 USMG5 MT-ND5 ENO2 NREP UCHL1 CREG2 COL5A2 FGF12 PSD3 LYNX1 GDI1 CA11 ATP1A1 PPP1CB GNAQ SNCB RGS4 NCEH1 GRIN2A MT-CYB OPCML TMX4 MT-ATP6 WBSCR17 PRKACB NDUFA1 NELL2 SNRPE MTRNR2L1 SPRYD3 ATP6V1E1 CHL1 SLC6A17 MTCH1 RPS3A SCD5 NDUFB3 HNRNPA1P40 IDS TBC1D15 ZNF385D YWHAB SLC25A6 TAGLN3 KCNAB2 SCAMP5 SDCBP LMO3 VDAC3 RPL11 CCDC184 FAM19A1 SYNGR1 SYNPR GNB1 ABHD8 GAP43 HTR2A ARPC4 RPL41 PPIA H2AFZ PDP1 NDUFB2 SMIM12 LINGO1 NCALD DCTN1 RPL21 SYT4 EIF1AX THY1 GABARAP CHCHD2 CPE HS6ST2 PTK2B TMEM130 ENC1 SYN2 NDUFAF2 TMEM151A ARL6IP5 BEX2 RAB11FIP5 OCIAD1 NRSN2 VSTM2A CLTC RPL3 CD63 FAM134A MDH1 REEP2 RAN CERS6 KLC1 CAP2 CRYM GPX4 DIRAS2 TCEAL3 TM6SF1 MT-ND3 TPI1 NAP1L3 ATP2B2 APLP2 CTNNB1 TMEM35 FBXO2 MPPED1 NCDN UQCRQ ETV5 PIN1 SYT11 IPCEF1 COX5B SNN DYNLL1 ATP5O RAB6B KCNH5 NPTN RHBDD2 EIF4A2 PKM RAB2A COX8A PTPRN2 CHGB KLHDC3 MAP1LC3B MAP2K1 MORF4L1 NDUFS5 UQCR11 BHLHE40 TMEM258 CADM3 CDK5R1 MORF4L2 ATP6V0B MAP2K4 RAB37 RBX1 ADAMTS9 PLD3 EGFL7 ARPP19 ARPC5L ALDOC C11ORF31 TMOD2 MSMO1 HPCA APP SLC17A7 TESPA1 SNCA ATP6V1A FXYD6 AP2M1 CDH8 SLC9A6 BEX1 NDUFB11 TCEB1 STMN2 FKBP8 GABARAPL1 CNTNAP5 B3GNT1 PEA15 FAM3C NUDT4 MAPK1 ATXN10 TOMM70A RPH3A RNF11 SULT4A1 QDPR DCLK1 CLIP2 PREPL COX17 STX1B FAIM2 UQCRH EPHB6 BSCL2 PLEKHD1 TUBD1 PITPNA ADORA1 NEGR1 COX6C PFN2 TM2D3 MTRNR2L12 TCEAL2 TUBB4A ISCU TMEM59L HSPA8 UBE2QL1 RPL37A RAB6A FBXL16 DYNLT3 TCEAL7 FAM19A2 ATP6AP2 ZNF503 NDUFA11 C19ORF53 SLC24A2 PTPRS KCTD12 COPG1 PGRMC1 SNX10 SRP9 SLIT3 SUCLA2 PMEPA1 YWHAQ MLLT11 MAP7D2 SNX3 VPS35 USP5 MAP4 TPGS2 SYNJ1 SYN1 SPCS2 TNNT2 KIF5A SNAPC5 MBP GRM3 SPTBN1 TMTC1 AES MAST3 CCDC25 MYO1B CX3CL1 RPS15 TMEM141 NWD2 CTSD VSNL1 ATP2A2 NDUFB5 SCOC UHMK1 CAMK2D NTNG1 HEY1 TBCA CACNA2D2 AZIN1 ANO3 NDUFC2 GOT2 DMTN PCMT1 TMEM132C SIRPA OXR1 SELM HSPBP1 AP3S1 TOMM20 PPM1A CRIM1 CAMK2G AP1S1 ATP5A1 BHLHE22 BEX5 RAB27B TIMP2 ASB13 PLCH1 KIF3C MAPRE3 SST RPL32 CD99L2 MARCKS MMD CA10 RABAC1 SPOCK2 ELMO1 HSPB3 NDP PRKAR1A CDH22 C14ORF2 WSB2 TGOLN2 PHYHIP NOTCH3 BAG4 PIK3R1 CNGB1 PPARGC1A YWHAH KRAS ATRN KCNA2 ZBTB18 KLF10 AK5 DUSP6 UBQLN2 RPL38 ISCA1 CNP OLFM2 BNIP3 ATP5C1 EPS15 MFN2 ATP6V1G1 BTBD1 MLF2 GHITM SLC1A2 CORO2B THOC7 LMBRD2 C1ORF52 MYEOV2 BCL6 ARL8B ELAVL4 BSN PTGES3 PAK1 COX7A2 IGSF21 VDAC1 RAB3IP STUB1 NBL1 GRINA PLCB1 ZFAND5 MORN2 CBX6 PFDN4 PPA1 ACP1 DEXI NDUFB4 FAM198B PSMC3 BAI2 MAPRE2 MDH2 UBA1 NDUFA5 STMN1 EIF1B GADD45GIP1 UQCR10 TMA7 CSDE1 HMP19 BEX4 RPS5 ACOT7 PPP1R7 ADD2 TUBB2A RPL26 PRDX3 ITM2C RHOB CYFIP2 FILIP1L DSTN KIF21A NR4A1 COPRS FASN PRUNE2 NRN1 HMGCS1 VGF NUDT21 ARHGAP35 PNMA2 TRMT112 BRINP3 PINK1 PCP4L1 ELAVL2 NDUFB1 SNRPN EID1 TUBA1A CADPS2 STMN3 ATP6V0C MIEN1 NGEF MTRNR2L8 FSCN1 ACTR10 RNF208 ENO1 MPI PCDH17 SKAP2 LPPR4 NMNAT2 ATP5J GPR6 PGAM1 OPN3 ARL4C IDI1 ATP6V1B2 FAM219A DKK3 GPX1 MPC2 COX14 BEND5 FOXP2 HS6ST3 REEP5 AP2B1 ADRA1D PELI3 UBC SYT13 CEND1 PEG10 TLE4 TUBB4B DGUOK ATP11C PCSK1N ARL2BP RPS3AP22 SERF2 HCN1 SYT3 TXN GSTO1 RPL18A FRMPD2 SERINC3 PCDHGA5 ATP5E CHMP4B PIFO UBE2N PPDPF MAP1A MAP1LC3A TOMM7 SLC25A22 MAPK8IP2 GORASP2 CLDND2 SEZ6L SEPT4 GFRA2 COX4I1 SERINC1 FAT3 SPHKAP UQCRB GRPEL1 C2ORF74 SNAP91 ETS2 YWHAZ DACH1 PDCD5 NARS RXFP1 TCEB2 C1ORF115 KCNC2 AURKAIP1 COL11A1 CXXC4 GRIN1 DNAJA1 UBB TKT RP11-20I23.1 HSPB8 ITFG1 SCN1A CFL1 LYSMD2 ENSA FKBP1B POMP RPL23A ZNF208 DBNDD1 SYNGR3 NDUFC1 SELT COX7C NCAM2 WASL PPP2CA GPR158 EGR3 BASP1 SLC35B1 HRH3 GMFB KIFAP3 ZNF365 PLCXD3 PNMAL1 SLC12A5 DPY19L1 NPTXR CKB TBR1 PJA2 AP2S1 MMP24-AS1 CABP1 SH3GL2 RPL17-C18ORF32 RPL17 SKP1 MTRNR2L6 NSF PSMB3 RP11-219A15.1 ATP6V1G2 PCDHA9 PCDHA4 PCDHAC1 PCDHA10 TUBB3 GTF2H2C_2\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "cortical layer 4 excitatory neuron" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: SYT1 SNAP25 RPL26 ITM2B LMO4 CADM2 PKM NDUFB2 RPL41 PDE1A SYTL2 DPY19L1 PNMA2 MT-CO3 RORB DCTN1 MT-CYB YWHAH RHEB MAP1B TMSB10 CHN1 CALM1 RTN4 SCAMP5 YWHAB MT-CO1 HNRNPA1P40 RP11-111M22.2 SYT4 GLIPR1 SYT13 OPCML NPTX1 LGI3 STMN1 CTBP1 NDUFB4 NCDN CDK5R2 IDS PRKCB ATP2A2 CYCS FAIM2 OCIAD1 LANCL1 NTNG2 NDUFB8 FARSA ERH FAT3 DDN FBXW11 MARCKS RPL21 DPY30 MAPK1 YWHAQ CYP1B1 UROS FOXP2 RAB1A TUBA1B CNTN1 VPS35 MT-ND2 RPL32 EGFL7 RPL6 OAZ1 NECAB1 PPIA BAG4 STX1A APLP1 RPS28 ONECUT2 ENO2 VSNL1 YWHAG LRRIQ1 RTN3 PRDM8 REEP2 TMA7 NEGR1 PSMD12 NAP1L5 IPCEF1 MRPL20 PLD3 PCDHA10 AZIN1 RPS10 SGK223 ZBTB18 AC244489.1 TLE4 TSPAN7 MT-CO2 PCSK1 TLN2 HAPLN4 ITFG1 PEBP1 COX8A POLR2M MT-ND1 MYEOV2 PLCXD3 OLFM2 NGFRAP1 CSDE1 RPL37A DCC FTL SLC8A2 BASP1 CALM2 EPS15 PLCB1 STMN3 PSAP USMG5 GHITM KLK7 SLC17A7 ARL1 CAMK2D SCN1A ETFB BEX1 KIF1A PFN2 PPP3CA CRYAB RAB7A NUDT21 UBQLN2 NDFIP1 PDP1 SPARCL1 ANAPC11 NDUFA1 TMEM59L TIMP2 ELAVL4 RP11-219A15.1 NSF SKP1 SSTR2 RPL13A RPL36A GTF2H2C_2 TBC1D15\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "cortical layer 4 excitatory neuron" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MT-ATP6 MT-CO3 MT-ND4 MT-CO2 MT-ND3 TF CLSTN2 MTATP6P1 LMO4 CAPZB GDI1 GPM6A MT-CO1 PAK1 CFH RPS26 HSP90AA1 PTMA DMTN RPL32 ARL4C CHN1 MT-CYB MT-ND2 BIRC5 ITFG1 SNCA HSP90AB1 PRNP PPP3CA MUM1L1 RP11-195F19.5 NUDT4 NUAK1 STX1A PVRL1 SPDL1 NRF1 TSHZ2 EGFL7 KLC1 ATP6V1B2 TMSB10 SLC12A5 MAPK1 SYNPR NDFIP1 CNIH3 NEUROD2 FTH1 MT-ND1 PRKCB FXYD7 CACNG3 MT-ND5 NFE2L1 SCOC RTN3 VAMP2 SYT4 RTN4 TUBA1B CSDE1 CDC42SE2 FILIP1L NDUFB5 PRUNE2 TGOLN2 OR6D1P APLP1 PGRMC1 DPY19L1 C7ORF50 WBP2 ENO2 PCDHB4 SLC39A10 SERPINE2 PGM2L1 NREP PACSIN1 YWHAG MORF4L2 HNRNPA1P40 RPL17-C18ORF32 SERF2 C18ORF32 TBC1D15 DNAJC21\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "cortical layer 4 excitatory neuron" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MT-CO1 MT-CO3 MT-CO2 MT-ND4 MT-ND1 SNAP25 SYT1 MTRNR2L12 MT-ATP6 MT-ND2 BIRC5 TBC1D15 TUBA1B HNRNPA1P40 IPCEF1 MTRNR2L8 PRKCB MT-CYB SLC24A2 FAIM2 KLC1 FAT3 PJA2 TF NUDT4 VSTM2L PRNP DKK3 SPARCL1 CAPZA2 CAMK2G CCK PNMAL1 RGS4 PNMA2 STMN2 PPP3CA AES VSNL1 MTATP6P1 TRIM35 BEX4 SARAF HSP90AB1 SSBP3 CALM3 CAMK2D CALM1 PREPL MT-ND3 ATP6V0E2 CALM2 CHN1 PTCHD4 MTRNR2L1 RTBDN CDH8 RTN4 CHGB NCDN HMP19 PSD3 RPRM CD99L2 PCSK1 LGI3 GSTO1 RPS26 DPYSL2 RPL8 CTSD NDFIP1 GAP43 EIF5A2 SNRPN MDH1 MARCKS NAPA LPPR4 ITFG1 RPL31 B3GNT1 C14ORF2 ARHGDIG ATP5A1 DNAJC5 ATP6V1C1 BEX1 SMIM13 PSAP DPP6 LMO4 PSMC3 CERS6 SNCA SYT11 NREP GABARAPL2 KLHL5 EDIL3 KIF25 VAMP2 STMN4 COX6C SERINC3 BCKDHB RHBDD2 PTPRN KIAA1024 MAPRE2 SDHAF1 EIF1 NGFRAP1 HNRNPH2 RPS4X CLDND1 TUBB4A ATP1B1 ATP2B4 NDRG4 PTPRZ1 SULT4A1 PDE1C FTH1 RAB2A KCNH5 NECAB1 GRAMD3 GRIN2A NAP1L3 ARPP19 MFSD6 GABARAPL1 ADAM23 APLP1 UQCRB RTN1 CDK14 HSP90AA1 ACTB ARL1 NMNAT2 OR6D1P SYN2 CADM2 PKM JUND ATP1A1 MAP1B CYFIP2 TMX4 NUAK1 SIRPA CAMK4 RPL26 CTXN1 PPP2R4 PFDN4 RPS27A RNF11 MAP1A TBCA ATP6AP2 BSG HTR2A CYP1B1 PRUNE2 RPL38 PGM2L1 PCMT1 CRYM DNAJA1 TSPYL4 TMA7 NPTXR DPY19L1 KIF1A SLC17A7 PPP3R1 STMN1 GPM6A CBX6 PLP1 PDE1A SCN1A GTF2H2C_2 CFH IDS RPL6 NGRN MTRNR2L6 TNNT2\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "cortical layer 4 excitatory neuron" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MT-CO1 MT-CO3 MT-ND1 MTRNR2L1 RTN1 MT-CO2 MT-ND4 SYT1 RAB3B MT-ATP6 MT-ND3 MT-CYB PRKACB PIK3R1 PNMA2 MT-ND2 ATP1B1 PPP3CA MTRNR2L6 SERPINF1 RPL38 GNB1 RAPGEF5 ENO2 APLP1 CNTN1 NR1I3 NUAK1 MAP1LC3B SIRPA RPS6 PEX5L MTATP6P1 RPL13 RTN3 ATP1A1 RPL41 ENC1 CHN1 TSHZ2 CTBP1 CALM3 STXBP1 ATP6V1B2 OLFM1 OR6D1P MEGF10 PFKFB4 DCLK1 YWHAB NAP1L3 HPCA CPE TSPAN7 GDI1 NRGN SRD5A1 C1ORF52 SYN2 PPP2R4 RXFP1 NDRG4 KCNK1 TMSB4X REEP5 ADORA1 RPS5 MORF4L2 YWHAH MGST1 UBE2QL1 NDUFA8 SUMO2 SULT4A1 RORB COX7C AP2M1 HTR2A SLC25A6 FAM19A2 SPARCL1 RAB11A YWHAZ SERINC1 BEX4 FAM127A PKM NCDN CLDN11 SLC30A3 GPM6A CALM2 STMN3 FAM3C RFK HSPA8 RHOB BCAT1 IPCEF1 MAP1B PEBP1 TOMM20 ETS2 NREP ARL8A CYFIP2 DPYSL2 EIF4A2 KCNMB4 CLU PSD3 KLC2 PTMA HSP90AA1 HSP90AB1 WASF1 CD63 MAST3 PPM1A ATP5E RELN STMN4 CLSTN1 SERPINI1 CADM3 KCNA5 IDS ATP6AP1 CHL1 CCK PHPT1 ZBTB20 NDUFC2 CDK14 GNAQ RPL26 PKD2L1 RAB4A RRM2B CALM1 MT-ND4L TOLLIP SPAG17 CCDC124 PRKCB ARF5 ZBTB18 PLEKHG1 CHGB MAP2K4 CREG2 SLC9A6 CDK5R2 GPNMB BIRC5 ATP6V1G1 NFE2L1 RPL32 CHP1 STX1A SCOC KIF5A RGS4 RAP2A AQP7 EFR3A CDHR1 TOMM7 ARL1 DIRAS2 PRUNE2 TUBA1B EFHD2 ETV5 SV2B ARL6IP1 SLC39A10 RPS27A ARHGDIG PREPL SNAP25 LMBRD2 ATP6V1E1 PJA2 ABHD14A SYNGR1 C18ORF21 C14ORF132 ALDOA B2M RPL13A BSCL2 HNRNPA1P40 PLEKHD1 PCDHGA10 PCDHGA5 PCDHGA6\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "cortical layer 4 excitatory neuron" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MT-CO1 MT-CO3 MTRNR2L1 MT-ND4 MT-ATP6 MT-CO2 SNAP25 MT-ND1 MTRNR2L12 MTRNR2L8 MT-ND2 MT-CYB MTATP6P1 CHN1 MTRNR2L6 CALM2 TUBB2A NAT8L CAMK2D MAGED2 PPP2R2B SULT4A1 THY1 MAP1B MT-ND3 SLC17A7 GDI1 SYT1 STXBP1 PRNP SCN1A UBE2V2 KRAS HPRT1 IPCEF1 PSMC3 HMGCS1 CLIP3 ARF5 CLTC PGM2L1 CALM1 SPARCL1 KIF3C SERINC3 PTPRM PPP3R1 MAPK1 KIF21A MBP PEX5L MAPRE3 STAG3 NAP1L3 GABARAPL1 ENC1 C19ORF70 SARAF PPP2R1A YWHAZ HSP90AB1 CHRM2 C1ORF52 BIRC5 MT-ND4L SYT4 COX7A1 PEBP1 CABP1 STX1B OR6D1P ARSJ PIK3R1 COL12A1 PRKAR1A MORF4L1 PPIA STMN2 CCDC68 PJA2 PNMA2 PCDH19 SERPINI1 APP JOSD2 KCNV1 MORF4L2 DLC1 BEX5 RNF11 INPP5F BNIP3 SV2B UBQLN2 MMD YWHAG PRKCB STMN4 NPTN NEGR1 ITFG1 ANO3 SLC9A6 DYNLL1 NELL2 TSPAN7 CREG2 ACTB DKK3 LRP1B PCBP1 HRK HOMER1 TMEM258 KLHL5 EID1 LANCL1 TF BSCL2 RPL18A ATP6V1G2 HNRNPA1P40 PLEKHD1 TUBD1\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "cortical layer 4 excitatory neuron" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: PIK3R1 SNAP25 SYT1 RAB3B TSPAN7 EXTL2 MT-ND1 SLC24A2 CADM2 MAP1B CHN1 ATP1B1 PCDHA4 PNMAL2 RELN MT-CO1 PROX1 CD24 KIF5A PREPL RP11-219A15.1 CFH ZNF385D DNAJC21 MPPED1 KCNV1 STXBP1 PPIA CADM3 GPR158 SKP1 ATP2A2 GRIN2A SLC38A1 NUAK1 SCOC VPS35 RPL10A HSPA4 SULT4A1 DYNLRB1 RAPGEF5 UBE2QL1 FTL NCEH1 NRCAM EDIL3 BNIP3 LAMTOR5 PHYHIP GADD45B REEP5 RGS4 TCEA2 FAIM2 IQSEC1 CLU CRYZ POLR2M KCNA1 SERINC1 CKB RPS28 CYB5R3 DNAJB9 CRYBB3 CFL2 NECAB1 KIF21A ZBTB18 C6ORF118 MT-CO3 ADAM23 MIEN1 CPLX3 OLFM1 RAP1GAP2 NDRG4 CPE COL6A1 EIF1AX RP11-139K1.2 COX14 VAMP2 RTN1 BAI2 RORB SNCA LMO4 MT-CO2 RAD23B ARL8B ONECUT2 MAP2K4 TSPYL1 LRRIQ1 OAT MT-ND2 PRNP TUBD1 HPRT1 MFN2 NELL2 PTMA CXXC4 ACTB CD99L2 ELAVL4 COL12A1 PEBP1 PODXL SLC22A17 MAP4 SLC25A22 MAP1LC3B IDS RP11-20I23.1 UQCRB ATP6V0C AC244489.1 NR1I3\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "cortical layer 4 excitatory neuron" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: RAB3B CCK RP11-111M22.2 SYT1 RTN3 SNAP25 BIRC5 TMSB4X PRKACB PREPL MAP1B PSAP NPTXR RTN4 ZNF385D ATP2A2 DCLK1 MORF4L1 CRIM1 ARF1 RAB6A TNNT2 SCAMP5 ENO2 TOMM20 CKB CLSTN1 STMN1 CHN1 NRCAM RPL17 MTCH1 NDRG3 STXBP1 CALM2 DNAJC21 NR1I3 YWHAG UHMK1 PFN2 RPL41 VSTM2L RPL37A ANXA6 NDUFA11 NDRG4 RPL35 REPS2 LGALS1 THY1 ARPP19 MT-CO1 PGAM1 KLHDC3 COX6C MORF4L2 COX7C NAT8L PGK1 SNCB TUBA1A RPL31 ARL6IP1 SCOC SULT4A1 GDI1 PPP3CA RPS12 PPIA HOMER1 ELAVL2 MOXD1 STX1A CLU PTPRS SCN1A ARL6IP5 PLOD2 TUBB2A PTPRN DRAP1 HSP90AB1 SYNJ1 NDFIP1 GPX4 FTH1 RAPGEF5 CALM1 BEX1 SV2B NDUFB10 KCNH5 RPL38 CREG2 PLEKHD1 ATP6V0C RP11-20I23.1 ALDOA PLD3 ITGA6 SLIT1 ATP6V1C1 COX17 FKBP1A OLA1 ADAM23 PBXIP1 PKM PNKP SEPW1 EIF4A2 TMEM141 KLC1 MGST3 MRPS21 PCDH17 CD63 RBX1 CYFIP2 NUDT4 HMGCS1 PTGES3 NDUFB8 DPYSL2 NEFH TNFSF18 MT-ND2 PCDHA4 HINT1 NAPB PRNP CABP1 CNP ATP5G1 MYEOV2 GPATCH4 PNMAL1 AES TMEM59L MYOM2 CLIP2 UCHL1 SH3RF1 BEX4 UQCR11 SSTR2 ATP1B1 SUMO2 NDUFA13 YWHAH MT-ND4 PPM1A TCEAL2 HMGCR ETV1 TMLHE S100A6 CLIP3 HSPA4 NDFIP2 DNAJC5 RILPL2 SERF2 STMN2 NDUFS6 VPS35 TMEM130 PHYHIPL TSPAN7 APP PCSK1N NHP2L1 MAGED2 MARCKS FIGN BCAP31 DNM3 MSMO1 PJA2 PRUNE2 CTNNA2 ATP6V0E2 NDUFC2 IPCEF1 TOMM34 GAPDH TIMP2 GRINA MED10 BSG CCDC158 RPL13 EIF1B RXFP1 ATP6V1A WSB2 RAB11FIP5 PRDX1 GNG3 KISS1R SCN3B SELT MMD ATP5B TGOLN2 C1ORF95 MAP2K1 PDE1A CORO2B OLFM1 LIN7B STMN4 NEGR1 ENSA CPLX1 RELB IMMP1L RPL15 RORB NAP1L3 SCN1B KIF5A GNB1 SPTBN1 DMTN SLC6A17 ELAVL4 ISG15 PPP2R2B SSBP3 SLC24A2 ITM2B BCAT1 GNG2 DYNLT3 RANBP1 DCC FKBP1B SLC17A7 SCG2 PLCD1 NUAK1 KIFAP3 ATP6AP1 GRIN2A GDF10 C18ORF21 TOLLIP CADM3 GPNMB RAB7A WASF1 WISP1 SLC39A10 SOD1 SARAF ARPC5L ACP1 DNAJC6 ALG3 ACTR10 UBE2F PRDX5 P2RX6P SLC8A2 TRIM37 SQLE IFI6 EDF1 FAM163B GABRA5 PEX5L GUCY1A3 SLC7A8 TBR1 WASL NGRN VEGFA DAB2 ATP1A3 CCDC69 SLC7A5 ZBTB18 NRGN NDUFAF2 PNMAL2 GPR158 OPCML ENC1 YIPF3 NEFL TUBD1 SLC25A4 RPL39 KIF1A DNAJA1 CHCHD2 KIF25 TMX4 GABARAPL1 NREP C1D KIF3C CLPTM1 APBB1 RPL8 ATP1A1 NOV PGM2L1 WARS CMAS COA3 SERINC1 CD59 RPS6 BTBD10 RASGRP1 EGR1 PDP1 MLLT11 FIS1 FXYD7 NECAB1 RTN1 UBE2D2 MT-CO3 NFE2L1 LAMTOR5 ETFB GAP43 SNAP91 CAP2 ATP5J2 COX7A2L ARHGAP35 NDUFB1 ACTB GLDN LMO4 UBA1 RPL11 PGRMC1 CTNNB1 MAST3 SERPINI1 NELL2 PLCB2 NGEF ZMAT2 MRPL20 KLC2 ARF3 ZNF365 PAFAH1B2 PLCB1 HSP90AA1 SNCA LMO3 PPP2CA NDUFB5 COL5A3 QDPR IDS PSMB3 C18ORF32 DYNLRB1 BSCL2 RPS15 MTATP6P1 AC244489.1 MT-ATP6 PVALB LINC01296 RPL17-C18ORF32 RPS3A ATP6V1G2 TBC1D15\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "cortical layer 4 excitatory neuron" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MT-CO1 MT-CO3 MT-ND1 MT-ATP6 MT-ND4 RTN1 MT-CO2 SYT1 MTRNR2L12 ZNF385D SYTL2 TSHZ2 MAP1B SNAP25 SERINC1 SPARCL1 CDH8 NRGN MTRNR2L1 PTPRN PTCHD4 PGRMC1 ATP6V1B2 RPL13 CCDC25 TRIM37 TTN RPL3 DCC NDFIP1 SYNJ1 FBXL16 NDUFAF3 RPS27A SEZ6L2 RPL32 PCSK1N MT-ND2 SSBP3 ID2 COL6A1 NEUROD6 MT-ND5 DPYSL2 STMN1 PHF11 NRCAM BEX4 RPL31 RAB6B NAPB NEGR1 APP PI4KA GPR26 RPL21 TOLLIP CALM1 RPS2 RPL39 MTATP6P1 PRKACB PLD3 PTMA RPL37A UBE2E3 GRIN2A AP2B1 MT-ND3 PRKCB SNX10 NR1I3 CFH NHP2L1 HSPA4 CAMK4 PJA2 MAOB ATP1A1 CDK5R1 SH3GL2 CLU RPL17 CLPTM1 RPS3A NRIP3 GDE1 LPPR4 ARL6IP1 FAM84B ACRV1 CTNNA2 OCIAD1 SLC12A5 HOMER1 SLC39A10 GOT1 GDA EID1 RPS6 ATP1B2 PCDHA10 SERF2 PFDN1 SUSD4 COX5B SCN3B GAPDH NTNG1 GPM6A DNAJB9 ARL8B SPOCK1 ATP2B2 DYNLRB1 PLCXD2 MTRNR2L8 FOXP2 CLSTN2 SYNPR YWHAG PREPL NDUFS6 PEA15 MFSD2A OAT PODXL WBP2 NPTXR RAB3A WLS PCDHB4 CAPNS1 ITFG1 SYT13 LDB2 GAP43 CDC42SE2 GRINA SARAF ACTR10 YWHAQ GSTT1 MAPK8IP2 SOD1 LAGE3 ENO1 ITM2B HSP90AB1 SMAP2 RHEB NDRG4 OLFM2 ALCAM FXYD7 NOP10 PRKCE BAD SYT11 PPP2R2C RPL11 CNP UBA52 MT-CYB HTR1F SERPINF1 MRAS SUB1 PSMC1 GABRG1 RAB7A MAPRE2 OAZ1 SSPN PGAM1 INSIG1 DPY30 TM2D3 FXYD6 THBS4 CISD1 FAIM2 RAB1A ATP6AP2 ARL4C NECAB1 FAM131B NDUFA12 CLSTN1 PPP2CB NAP1L3 SIRPA RORB UBE2QL1 RHBDD2 MAGED1 VDAC1 PSD3 TMEM150C PEBP1 DKK3 SLC25A4 MORF4L1 ATP6V1A CADM2 COX6C HMGCR GPX4 YWHAB CERS6 ATP6V0E2 GNAQ TMEM130 PAQR8 MTPN PCDHA9 SCD NAP1L5 SPTBN1 HPRT1 IPCEF1 SEPW1 ZFAND5 PTPRZ1 EIF4A2 SV2B KIFAP3 TNNT2 PGK1 FTH1 RPL41 RPL17-C18ORF32 OXR1 SYN2 CNR1 ETV5 RTN4 DPY19L1 CDC37 MAP1A EFR3A YAF2 MAPK1 SLC38A1 RASGRF1 ATP5C1 STX1A CHN1 AP2M1 ANK1 RHOJ SNN TPPP SEZ6L PDZRN4 EGR3 CIAPIN1 TRHDE TXN THY1 ARL2BP ELAVL2 AK5 OPCML PRKCG PPIA CTU2 MORF4L2 RLIM SNAP91 ACTR1A IDS C14ORF132 SLC17A7 DNAJA1 TIMP2 RPL35 PTK2B SCG2 SYT17 SCOC OPA1 PLCH1 DCLK1 MAPRE3 ARFGAP2 RP11-20I23.1 RPL18A ATP6V0C MTRNR2L6 RPL6 NGRN ARF3 TUBB GPR98 LAMA2 PCDHGA6 PCDHGA10 PCDHGA5 TBC1D15 RAB3B\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "cortical layer 4 excitatory neuron" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MT-CO3 MT-CO1 SYT1 MT-ATP6 MT-CO2 SNAP25 ARL6IP1 MAP1B STXBP1 SLC39A10 MT-CYB PNMA2 GPM6A ATP2B2 MTRNR2L1 PREPL MT-ND4 SKP1 FXYD6 OCIAD1 PPP3CA GDI1 ARPP19 TPD52 PEBP1 TSPYL1 EIF4A2 CHN1 BASP1 UCHL1 YWHAB RTN3 CADM2 RHEB SNCA NPTN CNTN1 TUBA1A TUBA1B SIRPA DHCR24 ATP1A1 EIF1B NRGN SPOCK1 RTN1 TUBB2A NUAK1 PJA2 ARL8B GAP43 PTMA WASF1 PRKACB ACTG1 MORF4L1 GAPDH CLU PPA1 ENO2 MT-ND1 PRKAR1B ACTB TESPA1 REPS2 MAPK1 CALM2 CKB PRNP ENC1 MT-ND3 MDH1 EGR1 ZBTB18 NDRG4 ATP1B1 ELAVL2 MTRNR2L6 QDPR PRKCB ITM2B LAGE3 RAB11A SNAP91 ANO3 SERINC3 KIFAP3 ADAM23 ATP5J2 TSPAN7 PGAM1 TMX4 NECAB1 KCNF1 BSN UBE2V2 SLC17A7 RPS12 VAMP2 TMSB4X RGS4 FAT3 RNF11 EDIL3 STMN1 PRDM8 NBL1 PTGDS CHP1 PHYHIP RORB BIRC5 ELAVL4 TUBA4A SLC9A6 NAT8L SCN7A IDS OAT KCNAB2 H2AFZ PNMAL1 HBA2 HOMER1 RAPGEF5 C1ORF52 D4S234E FTH1 NCAM2 GDA SLC12A5 NEFL NFIA EPDR1 CDC37 PPP3R1 ALCAM TRIM37 PDE1A GMFB HDLBP HCN1 SLC25A4 HMGCR CBX6 UBE2E3 EPB41L3 LAMTOR5 PPP2CB PIK3R1 ENSA GABRA1 SMAP2 WBP2 DIRAS1 CNTNAP5 CAMK2D DNAJB6 CPLX1 SYT3 PRKCG CALM3 NCALD CALM1 SLC8A2 DCC CHL1 COX7A2L EFR3A BAI2 STMN2 SLC38A1 PACSIN1 BEX4 HMGCS1 MAP4 NEGR1 TMTC1 NAPB UBQLN2 NDUFA1 ATP5E CITED2 MAPK8IP2 LDB2 CLIP3 ATP5I NEFM FIGN VPS35 PPP2CA YWHAG EIF1 EPHA6 WASL RPL13 PFN2 MTRNR2L12 NPTXR GNAQ RPL7 ATP6AP1 GPX4 CMAS FER1L4 PDP1 NAPA SRP9 C1ORF115 MT-ND2 HSP90AB1 CPNE8 GHITM ATP6V0D1 PPP2R2C NCDN C18ORF32 SYN2 TBR1 REEP5 WBP11 LCNL1 LMO4 LMBRD2 PHYHIPL PPP1R7 PDCD5 SUB1 PLCH1 OLFM1 MAP1A PCBP1 CAMKK2 THYN1 SYT4 CSDE1 BAG4 AKAP12 MORF4L2 NPTX1 ELMO1 PSAP RAB3C NDUFA5 AQP4 HSP90AA1 RFK SUSD4 ATP2B4 ABHD8 KLC1 CCK KRAS MTATP6P1 SHD PARM1 TPGS2 RP11-111M22.2 PTK2B C1ORF56 RASGRF1 SLC19A1 MPC2 NRIP3 PPP2R4 RPL36A NRSN2 TERF2IP FAIM2 YDJC SNX3 ARF3 RTN4 ATP5G1 IPCEF1 MTRNR2L8 TSPYL4 ARFGAP2 SYTL2 NGRN RP11-20I23.1 ATP6V0C RAB3B ZNF385D NUDT4 HLA-DQB1 HILPDA ATP6V1G2 MBOAT7 AC244489.1 PCDHGA10 PCDHGA5 PCDHGA6 TBC1D15 DNAJC21\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "cortical layer 4 excitatory neuron" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MT-ND4 RORB SNAP25 BASP1 TUBA1B CALM1 CALM2 MT-CO1 LMO4 FAIM2 CHN1 MT-CO2 RAB3B MT-CO3 MT-ND1 VPS35 PRKCB SARAF PKM PEBP1 HMP19 DCLK1 SYT1 TBC1D15 OAZ1 TRHDE RPL13A YWHAH NEGR1 FTH1 NDFIP1 PREPL MT-ND4L FAT3 USMG5 ACTG1 ATP1B1 TSPAN7 PSD3 SLC30A3 NRGN PPP3CA DCC MT-ND3 GABARAPL1 FARSA SPARCL1 CNTN1 HOMER1 PRKACB FAM127A CALM3 NDRG4 RTN3 HNRNPA1P40 ESCO2 CFH PCBP1 HSPA4 TMSB10 UBA1 EID1 SYN1 MT-CYB SNN MTRNR2L8 LMO3 RASGRF1 PTCHD4 OR6D1P MDH1 CXXC4 PTMA MTCH1 AES STAG3L5P YWHAQ PCSK1N SDCBP ARPP19 NECAB1 KCNA2 WASF1 GNAQ FSTL5 SEPW1 USP5 ARF1 SPCS2 MTPN NAPA TCEAL2 NDUFA5 OXR1 APLP1 NEFL DNAJB6 MRPL33 UQCRC2 SSBP3 RPL23A RPL36A HS6ST2 ATP9A RNF11 ZBTB18 RGS4 EGR1 ATP6V0E2 GAP43 PTPRN SYNJ1 CLPTM1 RPL26 ATP6V1B2 DPYSL2 KLC1 SLC38A11 LPPR4 TMSB4X CDH8 LAMA2 DGUOK C12ORF49 CHMP5 PTK2B ARL6IP1 RPS15 SLC22A17 PPIA PCDH8 MYEOV2 AP3S1 PEF1 HRH3 PPM1A SERP2 DNAJC5 CAPZB STX1A PNMA2 CLIP2 SYNPR ATP6AP2 SNX10 CBX6 PLCB1 GPM6A APP LYNX1 SEPT4 UBE2E3 EFR3A PMEPA1 STMN1 PCP4 VAMP2 UQCRH RTN4 MT-ATP6 SYT4 AP2M1 EPB41L3 DNAJB9 C19ORF43 RASGEF1B MTRNR2L1 YWHAG ATP6AP1 NAP1L2 GSKIP RAB6A EIF1 RPL35 MORF4L1 SMAP2 EIF1AX CLMN NDUFA12 COL6A1 RASGRF2 MAGED1 ATP1A1 LGI3 ANAPC13 TSPYL4 LDHB HN1 PCDH19 RPL38 VAMP1 SCN1B ZBBX TSC22D1 TPT1 MAP2K4 TMEM59L TOMM20 BIRC5 INA GPR158 PTPRT MTRNR2L12 C1S MAPRE3 FAM19A2 MAP1B YWHAB NUDT21 ANO3 SPTBN1 STMN2 PITHD1 TRPC3 MORF4L2 RPL39 HSP90AB1 REEP5 SYT13 SLC6A17 PACSIN1 TNNT2 NHP2L1 STXBP1 NCEH1 BSG ATP5J HSP90AA1 SSTR1 PHF11 NUDT4 PGK1 RP11-111M22.2 JAKMIP1 AC244489.1 RAB1A\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "cortical layer 4 excitatory neuron" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MT-ND2 MT-CO1 MT-CO2 MT-CO3 MAP1B MTRNR2L1 MT-ATP6 SPARCL1 SYTL2 ARL6IP1 MT-ND4 SNAP25 RP11-219A15.1 TTN NECAB1 GPM6A RPL7 STMN1 SYT1 DNAJC21 ZNF385D RORB PIK3R1 DPYSL2 PJA2 NAPA MARCKS WASF1 PPP3CA TSPYL1 RGS4 SYT17 COX17 CHGB PRKAR1B SARAF PREPL YWHAG MT-ND1 SERINC1 SCN3B LMO4 MT-CYB STXBP1 UBB PLEKHD1 RPL21 MTRNR2L6 IDS FAIM2 SLIT1 TMA7 BASP1 TUBB2B TEX2 GOT2 SCAMP5 CA10 SNCB EIF1AX OLFM1 TUBA1A CCT5 AC244489.1 FBXL16 GUCY1B3 ATP6AP1 CPE EIF4G2 EPS15 CDC37 GABARAPL2 FAM219A ENC1 NDUFA4 SRP14 ONECUT2 CNR1 SLC12A5 MTRNR2L12 TUBB2A MEDAG HSP90AA1 AES PSMA7 PSD3 SEMA5A C1ORF115 INPP5F ACTG1 ARHGDIG WARS SLC9A6 SEPW1 ECM1 KCNH5 PRKAR1A SSTR1 YAF2 CHL1 SLC38A1 TUBA1B NDRG4 UBL5 NMNAT2 CLSTN1 SCD5 COL6A1 HRASLS5 MFSD6 IQCK TMEM158 TUBB4B PNMAL2 PNMA2 USP5 PLCB1 PITPNA CLU UCHL1 VSNL1 KLC1 APLP1 NDUFA5 IDI1 ETV5 LPPR4 ATOX1 SYN2 NEUROD2 FBXW11 FTL PCDH19 ACP1 PARM1 SEZ6L AP2M1 CLPTM1 CDK5R1 GUCY1A3 KCNC2 CD24 CREB5 RTN1 VGF BRK1 RNF208 ATP5I ELAVL4 NDFIP2 CXXC4 PLP1 SDF2L1 APP NAP1L3 ATP9A ARL4C MAP1LC3B SNCAIP NDUFV1 CLTC ATP1A1 PKM HS6ST3 TCEAL2 PRUNE2 ARPP19 C1S RPL13 TSPAN7 PTPRT LDB2 CADM3 RGS5 MGST3 STX1A UBA52 CALM1 NUAK1 NIPA1 TGOLN2 NPTXR CDH19 HMGCR FTH1 GRIN2A ACLY MORN2 NDUFB1 PDE1A RPL35 GDI1 AMIGO2 SCG2 KLHDC3 ELAVL2 SNRPN C11ORF31 GRIN1 RPL31 MTATP6P1 OR6D1P GABRA1 LMO3 FBXO8 NDUFB2 TMEM59L SLC39A10 SLC22A17 YWHAQ ITGA11 PLD3 HNRNPA1P40 ISCA1 NGRN ATP6V1G2 TUBB PCDHGA5 PCDHGA6 PCDHGA10 RAB3B TBC1D15\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "cortical layer 4 excitatory neuron" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MT-CO1 MT-CO3 SYT1 MT-ND4 MT-CO2 MT-ND3 MT-CYB MT-ATP6 SNAP25 MT-ND2 CALM1 TUBA1B CHN1 TMSB4X TSC22D1 SPARCL1 RTN3 GPM6A MAP1B CALM2 PRKCB YWHAH MTATP6P1 HSP90AB1 NUAK1 ACTB NRGN RTN4 GDI1 GAPDH RTN1 RGS4 HSP90AA1 VSNL1 PJA2 VAMP2 ZBTB18 TSPAN7 PRKACB NGFRAP1 MT-ND1 OXR1 GABRA1 STMN1 PSD3 SERPINI1 TSPYL1 PGAM1 PPP3CA LMO4 SLC38A1 SERINC1 SEPW1 ACTG1 TMEM59L NAPB CLSTN1 TAGLN3 PAFAH1B2 STXBP1 OLFM1 CCK YWHAB EIF4A2 TRHDE RAB2A PSAP MTCH1 NREP SNAP91 OAZ1 CAP2 PRNP PTK2B NEGR1 DCLK1 NECAB1 CYFIP2 PNMA2 BEX1 CAMKK2 FTH1 ATP1A1 NDRG4 ENC1 SLC17A7 NDFIP1 TUBA1A BASP1 APLP1 GRIN2A NPTN MAPRE2 ATP1B1 CABP1 GAP43 SYNJ1 MAPK1 NRN1 PPP2CA YWHAZ TMSB10 CDK5R1 APP HTR2A MTRNR2L1 TOMM20 SV2B CREG2 DPP6 GOT1 PGRMC1 PEBP1 PREPL TOLLIP RORB VDAC3 TUBB4A SNCA PPIA CNTN1 CADM2 ZFAND5 NSF CEND1 CPE PKM PIK3R1 DIRAS1 NDFIP2 SNRPN CDK14 MDH1 EIF4G2 ATP5I SLIT1 ARL6IP1 YWHAG SPOCK1 CA10 SDCBP PFN2 GRIN1 GDA C1ORF115 SCG2 WASF1 TERF2IP TMEM35 UCHL1 YWHAQ ASAP1 CLU TPI1 NPTX1 UBE2V2 SLC30A3 SCAMP5 STUB1 NDUFS5 NAP1L2 PLCB1 RPL37A CKB SLC8A2 FGF12 SYN1 ENO2 EIF1AX PRKAR1A FAIM2 KIF5A PEA15 KCNV1 PDP1 SYTL2 RAB3A ATP6AP1 KLC1 TPD52 TMA7 NAP1L3 PCMT1 KCNC2 GABARAPL1 PPP2CB PIN1 IGSF21 PTMA ATP2B2 GPR158 UBQLN2 NCALD BSN ATP6V1C1 NCDN RAD23B RHEB DNAJC6 LINGO1 ALDOA FAM3C WBP2 SCN3B RAPGEF5 OCIAD1 CFL1 CTBP1 PLD3 PPP3CB ELMO1 DPYSL2 TSPYL4 EDIL3 AES CHL1 NEFL PRKCE SUMO2 WASL ITM2B SERINC3 STMN2 SYNGR1 GHITM RAB7A TCEB1 NAPA COPRS EIF1 ARPP19 ATP5A1 PGK1 SYNPR WDR47 EPHA6 FAT3 EID1 CAMK2G THY1 FAM19A2 POMP PTPRN SCD5 HK1 SKP1 INSIG1 SLC22A17 ID2 RHBDD2 TPRG1L RAB11A FXYD6 PRKAR1B AP3S1 ATP1A3 MT-ND4L MRPS7 GNAQ SYT5 CTNNB1 GPX4 AP2S1 FKBP1A RP11-20I23.1 ATP6V0C TRIB2 LAMA2 ATP5C1 RAP1GAP2 SNRPE NME1 NFE2L1 NAP1L5 AP2M1 CYC1 NDUFAF2 BEX4 DYNLL1 KIF21A KLHDC3 SYN2 ISCA1 RLIM TUBA4A VIPR2 NUDT21 UQCRC1 TMOD2 AZIN1 RPL31 DNM3 MAP2K1 PPDPF RPS2 PLEKHG1 C11ORF31 CTNND2 SULT4A1 MAP2K4 HOPX ENSA ETV5 CALM3 DDN NGEF SCN1A PLS3 ATP6V1B2 PNMAL1 LAGE3 HMGCS1 HMP19 FBXL16 TBR1 PNMA1 NDUFA13 PRDX1 HIGD1A SNCB PFKP ACTR1A ATP6AP2 SEZ6L2 NRCAM CD99L2 GUK1 PPP2R1A SKAP2 ARL8A ARHGDIG ELAVL4 RPL10A HOMER1 SLC6A17 SNN ACLY SYNGR3 FRMPD2 CRIM1 VDAC1 SCN2B SSBP3 PET100 MTRNR2L12 RPS6 PHYHIP SUB1 KCNAB2 SUMO3 RNF11 SLC9A6 UBE2E3 GNB1 CLTC BAG4 ANXA6 RAB11FIP5 ARF3 SPCS2 NDUFB1 PI4KA MAP7D1 UQCR10 FASN PITPNA HS6ST2 CSDE1 NCEH1 FTL BSG RAB3C ANO3 SLC39A10 COX4I1 STX1B SYT13 SMIM13 CTSD PPP2R4 ATP5B DSTN ETS2 TOMM70A NDUFB5 RASGRF1 MAPRE3 APLP2 MIF UROS MTPN SLC12A5 COX7C DNAJC5 RHOB UBB NEUROD6 CDC42SE2 FKBP8 VPS35 NPTXR UBE2QL1 ELAVL2 EPB41L3 UBA1 ARL6IP5 PCSK1 COX6B1 BHLHE40 TMX4 TUBB4B SPOCK2 MUM1L1 SH3GL2 UBE2M NDRG3 AURKAIP1 SERF2 KIF3C COL6A1 ACOT7 KCNK1 TUSC2 ATP6V1E1 RNASEK-C17ORF49 PSMD12 FAM219A HTRA1 SMYD2 ADAM23 CLDND1 PCDH19 LUZP2 ATP6V1A HCN2 MRPS21 PPP2R2C RPS3A CITED2 TMEM70 CAMK2D INPP5F NGRN ITM2C SLC25A22 NDUFA8 NR4A1 CDH13 CLIP2 APEH RPL39 RAN NDUFB10 ANXA7 ZNF503 RPL12 PCYT2 OPA1 PITHD1 RPS15 NMNAT2 NTNG1 UBE2N NHP2L1 PBX3 PTCHD4 GNG3 GSTP1 RPL26 NRF1 PRUNE2 FAM134A FIBIN UHMK1 HDDC2 CACNB1 TSHZ2 HSPA8 RAB6B NDUFB7 RNF208 TMEM230 MARCKS REEP5 BAALC CCDC85B USP5 RPL35 FKBP4 TIMP2 MAPK8IP2 VGF EHD3 RPL21 TM6SF1 RAB6A APOL6 GUCY1A3 MCHR2 PGM2L1 DUSP2 ZBBX EGR3 MRPL12 DPY19L1 CPLX1 CADPS2 LINC00087 MORF4L2 CAPNS1 HSPBP1 ADCYAP1 AKAP12 BCL6 KCNA2 PNMAL2 LDOC1 SH3BGRL2 LZTS1 RAB4A ARHGAP35 KLF10 UQCRQ UQCRB OPCML SMAP2 PINK1 PLCXD3 FBXW11 CMAS CHMP5 CDH8 ARL4C FAM174A UBA52 OLFM2 PAK1 PPP1R9B THOC7 CCDC124 DKK3 CORO2B OPN3 CD9 LDOC1L AQP4 FAM19A1 BCAS2 TMEM151A IDI1 RAB31 SOD1 GFRA2 CLTB JUNB TPPP TMEM130 NDUFAF3 MAP2K2 PCBP1 HS3ST5 SLC7A8 BSCL2 C19ORF53 LHFP AP1S1 LMO3 OPRM1 GPX3 RPL15 FSCN1 NELL1 ENOPH1 KRAS ENO1 SYT3 CDK17 ZNF365 RP11-195F19.5 LDB2 ATP5G3 BTBD10 GUCY1B3 ATP6V0E2 RAB5C EPS15 CAMK4 S100A6 GABRA5 CLPTM1 LYNX1 FBXO8 KIAA1045 C14ORF2 MAP4 NKIRAS1 CD59 NCOA4 ATP2B4 MAST3 CLIP3 RNF152 CDK5R2 TRIM35 SEZ6L LYSMD2 DNAJA1 C3ORF80 CYCS PTPRVP GRM3 FABP3 STK24 ATP6V1G2 PARM1 KITLG TRIM37 IDH3A CBLN4 STMN3 SPTBN1 RPL8 MED31 GOLIM4 FOXP2 CHRDL1 DLX1 PAQR8 B3GNT1 COL5A2 DLD RPS28 OAT CPNE4 PAM NHLH2 ARL8B PRDX2 ATP5O ATP6V0D1 PRDX3 EFR3A RPS4X WSB2 NR1I3 HPCA REPS2 NDUFB8 RAP2C SMOC1 SNX10 ATP9A RPL23A FBXL15 ARX SLC24A2 NELL2 PDCD5 COPE FAM189A2 SCN1B BEX2 SAP18 KCNMB4 ZBTB39 MT-ND5 TCEB2 FBXO2 FXYD7 ATP5E PELI3 DUSP6 PRKCG ZNF385A MYEOV2 TCEAL7 CRYM GADD45GIP1 RTN4R BEX5 ATP5G2 COPG1 HMGCR TPGS2 NEFM DAB2 COX5A RPL36A CLSTN2 EIF1B BCAP31 ANKRD18A JUND HDLBP ATP2A2 MLLT11 WBP11 C19ORF70 DNAJB9 CCDC184 ACTR10 PFN1 TNNT2 CDKN2D GPR26 PTPRT KREMEN2 MPC2 NEFH CPLX2 SNCG CHCHD2 DCTN1 FAM163B ATP6V1F CDC37 ALDOC DCC PCDH8 UQCR11 RAB1A RPL38 RPL13 NGB PACSIN1 PHLDB2 PSMA7 HPRT1 HNRNPH2 PIP5K1B TUBB FAM131B SYT11 USMG5 IGFBP2 UBC ARL2BP LINC01296 PSMB5 MZT2B NDUFC2 MBOAT7 TMSB4XP4 PSMC3 TESPA1 MIR6723 TEX2 SCOC COX6C CA11 NARS NDUFB3 MTRNR2L6 C7ORF50 CHMP4B COX17 TRPC3 MRFAP1 ETS1 SARAF DCTPP1 GTF2H2C_2 NUDT4 ARF5 CFH PSMB3 RPL13A PCDHA9 PCDHAC1 PCDHA4 PCDHA10 IDS\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "cortical layer 4 excitatory neuron" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: CABP1 AC244489.1 OPRM1 RTN4 SNAP25 MAP1B TUBD1 ATP6AP2 MT-ND4 SEZ6L2 GRIN2A PEA15 PRUNE2 MT-ND2 NECAB1 PRKCB FAT3 GNAQ GHITM CYFIP2 HSP90AB1 TF TBC1D15 RAB3B SYTL2 ASAP1 GRIN1 HS6ST3 FER1L4 CDC42SE2 OAZ1 CLSTN2 LSM4 SERINC3 PPP3CA VDAC1 WBP11 PDLIM5 NEGR1 RORB MED10 STK24 DLD C9ORF16 GUCY1A3 TPT1 CISD1 MORF4L1 SLITRK1 PPP5D1 CAMK2G EIF4A2 LMO4 PDP1 TMX4 CDK14 EEF1A2 PAK1 CFL1 SYT1 DPYSL2 KLC1 SUMO2 CHL1 FLOT2 RAB1A TLN2 TXN BIRC5 SNCA ATP5A1 FOXP2 PEX5L TSC22D1 GDA RLIM EPHA6 UQCRB PRNP TRABD2A IDS TMEM70 RASGRP1 HOMER1 SARAF HSP90AA1 FAM3C NAT8L MAGED1 FAM163B CALM3 SERF2 NDUFB7 ZNF208 TUBA1B KIFAP3 WBP2 HTR2A AZIN1 SSBP3 TBCB RTN1 CLIP3 PDE1A PAFAH1B2 NDUFA5 NREP DYNC1I1 SYT11 MBP BASP1 FSCN1 ITFG1 LMO3 SYT13 MAP2K4 MT-ND3 MTRNR2L1 TUBA4A SLC6A17 RAB4A PTK2B PCBP1 KIF1A MZT1 GMFB MAP1A AES RPL37A THYN1 C7ORF50 TPPP RPL32 ACTR1A LINGO1 MAPK1 SCD5 NDUFS6 MT-CYB PRKACB PPP2R2C ZFAND5 NUAK1 STX1A KCNAB1 SHC4 RAB6A PCSK1N MT-ND1 TMOD2 RP11-219A15.1 ATP1A3 LAMA2 NUDT4 ALDOA NGRN PCDHGA10 PCDHGA5 PCDHGA6 OR6D1P\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "cortical layer 4 excitatory neuron" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MT-CO3 MT-CO1 SNAP25 MT-ATP6 MT-ND2 CHN1 RP11-111M22.2 CALM1 MT-CO2 ARPP19 SERF2 OAZ1 DCLK1 MT-ND3 MT-ND4 LMO3 RAB3B CADM2 SERINC1 HSP90AB1 PNMA2 FTH1 TF HTR2A CA10 OLFM1 CBX6 STMN1 SNCA BIRC5 RPL11 NTNG1 KCNA2 NMNAT2 NDUFA8 OPRM1 CLTB YWHAH TRHDE ARL8A PRKCE CLIP3 MTRNR2L12 RXFP1 UBQLN2 AES GUCY1B3 NBL1 PHKG1 CERS6 SCAMP5 NCDN YAF2 ENO2 TUBA1A RORB ENKUR OPCML CNGB1 SERINC3 MTPN SCG2 CAMK4 PGRMC1 YWHAB PIK3R1 HPCA BEX1 PEA15 SYT1 GHITM FLOT2 UBE2E3 LAMA2 PPP3CA USP27X GABARAPL1 LMO4 C4ORF3 NDFIP1 PJA2 CADM3 ITM2B RASGRF2 CDK5R1 COPS8 SPP1 NREP TAGLN3 MT-ND5 RAB3C STMN3 FKBP8 NDUFA4 TMSB4X CHMP4B RTN1 RAB1A RAPGEF5 PEBP1 SH3RF1 TSPYL4 ATP1B1 TBCB SULT4A1 ATP6V1A MSMO1 PTPRQ ANO3 DNAJC6 CALM3 STX1A RPL39 HSP90AA1 CALM2 RPL37A NEGR1 TMSB10 ACTR6 COPRS MTRNR2L1 SERPINI1 PGM2L1 NDRG3 NAP1L2 PARM1 COX4I1 SLC38A11 RPL15 MARCKS PTK2B CXXC4 CHRNA6 CABP1 RAP2A NECAB1 ARPC5L ADAMTS9 ARHGDIA ATP2B2 BASP1 YWHAZ RCAN2 C7ORF50 APP VAMP2 TMX4 PIN1 KCNC2 NKAIN1 STXBP1 IDS OR6D1P GABARAP HNRNPA1P40 NR1I3 PLEKHD1 PCDHGA6 PCDHGA5 PCDHGA10\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "cortical layer 4 excitatory neuron" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: ZNF385D SNAP25 PPP3CA UCHL1 PDLIM5 MT-CO3 OAZ1 CADPS2 LRP1B CREG2 PRUNE2 NTNG2 RGS12 NR4A2 SERINC3 TBC1D15 TF PSMC3 NDUFB8 ARL6IP1 CALM2 RPS28 GABRA1 MT-CO2 INSIG1 BIRC5 MT-CO1 YWHAB MT-ND2 MT-CYB CADM2 LRRC39 SCD H2AFZ KIF5A SYT1 PFN2 EIF4A2 DYNLL1 CIAPIN1 DIRAS1 OLFM1 TOMM20 AP2M1 NRCAM OR2X1P LRRIQ1 CD63 ABCA8 CAMK4 AK5 KLHDC3 RPL37A NDUFA5 KIFAP3 MAP1A TM2D3 MT-ATP6 FIGN MT-ND5 COL6A1 STXBP1 C1ORF56 CLSTN2 EIF4G2 BASP1 DYNLRB1 KIF1A DDAH1 NPTX1 RPL15 THY1 PTGER3 COX7A2 PSMD12 TRHDE RNF11 PLCB1 AP3S1 SYNPR SCG2 HINT1 SLC38A1 RTN1 GNAQ KLC1 SH3BGRL3 RPL31 LMO4 KCNAB2 FTH1 CLPTM1 CDK14 CFH TUBB2A ONECUT2 ITM2C PTK2B ARHGDIA CPE PSD3 IGFBP5 AC010731.4 ITFG1 MAP1B ATP6V0D1 SNAP91 COX7A1 GPM6A DCTN1 SV2B MT-ND4 PEX5L RPL32 DNAJA1 ASAP1 DCLK1 HSP90AB1 ACLY MTATP6P1 NRIP3 C1D RPL39 HIGD1A GUK1 MIEN1 SYNJ1 RPL21 TLE4 RPL13A SLITRK1 ATP6V1B2 CBX6 RPL17-C18ORF32 RPL17 HNRNPA1P40 CYB5R3 AC244489.1 DNAJC21\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "cortical layer 5-6 excitatory neuron" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: CALM3 MT-CO3 OCIAD1 TMEM155 MT-CO1 RTN4 EIF4A2 PCP4 SNAP25 MAP1B COX7C SLC38A1 SERINC1 EFR3A ITM2B CSDE1 GPM6A BASP1 CHN1 RAB3B NUAK1 PNMA2 ATP1B1 GHITM HDAC1 PLCB1 CHL1 VSNL1 GRIN1 THY1 HTR2C COL12A1 ATP6V1B2 SYT1 PGM2L1 TLE4 VAMP2 MT-ND4 SLC24A2 GNB1 LYNX1 DIRAS2 UBE2N USMG5 TMOD2 OLFM1 SYT11 YWHAZ KLC1 PPP2R2C MT-CO2 IQSEC1 CALM1 PRKACB YWHAG MLLT11 ARL6IP1 TUBA1B ATP6V1G1 MAP1LC3B GPR37 NUTF2 NEGR1 IDS ABHD14A STMN4 OLFM2 DNM3 STMN2 RPH3A TALDO1 TSHZ2 UBE2E3 C11ORF84 HINT1 SLC17A7 OXCT1 TBCB ATP5A1 CPE PTPRS KCNIP1 CPLX2 ECM1 PRNP DCLK1 MT-ND3 MTX3 OXR1 TAGLN3 C19ORF53 NECAB1 C14ORF2 PINK1 SLC22A17 CDK5R1 TM6SF1 MSMO1 ATP2C2 CMAS NDFIP1 AZIN1 TCEAL7 MT-ND2 AP2B1 PJA2 DPYSL2 EIF4G2 BSN EDN1 SARAF TUBA1A CLIP3 RPL26 YWHAB HMP19 LRMP MTRNR2L12 KLHDC3 RPL13A PAFAH1B2 FAIM2 RNF11 DDN MAPK1 RHEB RASGRF1 MAP1LC3A ATP2B4 TUBB4A USP5 PEX5L CYCS GPR158 HNRNPH2 NDUFA11 SERF2 CDKN2AIPNL ITFG1 NDUFB5 CNRIP1 ZCCHC17 APP RPL13 TMA7 PSMD8 RNF182 MTRNR2L1 CLTB CAP2 PITHD1 TCEA2 SUB1 CBX6 WASF1 MRAS AP2M1 HMGCS1 PLD3 CYFIP2 DGKG SV2B MRPS21 YWHAH CACNG3 NEFL PRKCG CLSTN1 CADM2 NPTX1 COPRS OPCML ATP5I RPL35 DPP6 POMP KCNK1 UQCRB TPI1 PDE9A C1ORF115 MTATP6P1 RHOB FAM174A GDA SH3GL2 RPL39 APBB1 MARCKSL1 ARHGDIA ATP5H ARL8A CHMP4B FABP6 FKBP8 GLO1 ATP1A1 BCL11B RASGRP1 NDFIP2 FASN COL11A1 CALM2 GSKIP TRHDE IPCEF1 TMEM35 C1ORF233 AP1S1 KIF1A MDH1 NPTXR PTCHD4 ZNF365 ATP6V1A RTN3 SLC12A5 TOX CAMKK2 NREP STXBP1 ATP2A2 TMEM158 WLS MRFAP1 RTN1 RPL11 PSAP HSPA8 ATP1B2 ARL4D MGST1 PFN2 ATP5B MT-ATP6 BNIP3 CFH HIGD1A HN1 LMO4 ARHGAP35 KCNA2 SEZ6L2 TMEM150C MAP4 TMEM160 GAPDH COX6C CLSTN2 LGI3 NDRG4 TUBB2A C19ORF70 RNF208 BEX2 FOXP2 PGAM1 SEZ6 RP11-111M22.2 MAPRE2 AK5 GRIK3 ASAP2 STMN3 PREPL D4S234E CAMK2N2 BTBD1 ALCAM PSMB5 LDB2 MYRIP ALDOC RPL21 MTND1P23 MT-ND1 B2M GABARAP MTRNR2L6 NGRN SNRPN PLEKHD1 NR1I3 RPS3A RPL17-C18ORF32 RPL17 PCDHA9 AC244489.1 PCDHAC1 PCDHA10 PCDHA4\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "cortical layer 5-6 excitatory neuron" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: GPM6A SYT1 GDI1 CHN1 CAMK2D SNAP25 ATP1B1 TBC1D15 TUBA1B NREP RTN1 CAP2 PNMA2 CADM3 SERINC1 PEBP1 PPP3CA CALM1 MT-CO2 RAB6A YWHAZ NAP1L3 RAB3B PRNP MAPK1 MT-ND4 VSNL1 KIFAP3 CDK17 RPH3A NRGN UBQLN2 RPL38 PTK2B TCEAL2 STMN3 TMX4 SLC38A1 GRIN1 PPP3R1 DMTN TUBB4A STX1B MT-CYB BSG HPCA NEUROD2 CLTC CLSTN1 GUCY1B3 PPM1A SNCA NUDT21 GTF3A PRKCG GOT2 PPIA TBR1 RPL23A TSPAN7 CNTNAP5 WBSCR17 ADSS MTUS1 PRKAR1A ATP2B2 MAP1B COX7A2L CALM3 CLSTN2 COX8A SLC7A1 PPP2R1A SSBP3 ROBO2 NUDT4 PEG10 STMN1 NAP1L5 CRIP2 PREPL OAZ1 SYN1 FEZF2 C9ORF16 PHYHIPL BAI2 PLD3 UBC CREG2 UQCRH LPPR4 CDH6 ATP1A1 PPDPF KCNK1 SPARCL1 DNAJC5 PIK3R1 NCEH1 CFL1 MT-CO1 RAP2A SLC17A7 EIF4A2 TMEM130 AK5 PPP2R2B ARF3 UCHL1 DBNDD1 STXBP1 ARPP19 NAP1L2 BASP1 COPS8 WASF1 MTHFS KIF1A NR4A1 VAT1L MFSD6 MAGEL2 NPTX1 MT-CO3 CDH13 CD99L2 RTN3 NAT8L CTGF CPLX1 PRKACB FKBP1A SLC9A6 ATP1B2 IPCEF1 SERPINI1 CD59 TSPAN33 NRCAM HMGCR MAGEH1 ARL6IP1 TPPP SEZ6 CALM2 GPR158 FAIM2 PPP1CB TSPYL1 BSN ACTG1 ZNF365 YWHAG RPS15 ATP6V1B2 RPL13A IDS TUBB RPS26 GTF2H2C_2\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "cortical layer 5-6 excitatory neuron" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MT-CO2 MT-CO1 MT-CO3 RAB3B MT-ATP6 MT-ND4 SNAP25 TF MT-ND1 TBC1D15 MT-ND3 BIRC5 PDE1A YWHAH RTN1 RTN3 MTRNR2L12 MT-ND2 TLE4 NR1I3 CHN1 MT-ND5 YWHAB MT-CYB RHBDD2 RPL31 PPIA UQCRB RTN4 LMBRD2 DCLK1 LINGO1 TBR1 TAS2R13 SYT1 RP11-111M22.2 SUMO2 HSP90AB1 NFIA RPL38 SCN1B AK5 LMO4 TUBD1 MAP1B NAPB PRNP SCAMP5 CAB39 C1ORF115 PIN1 YWHAG SERPINF1 DLC1 ZNF804A ATP1B1 NELL2 CX3CL1 LYNX1 ATP5J MCHR2 LAMA4 KIF1A SUSD4 SNN MTRNR2L1 SUB1 ESCO2 SLIT1 PSMD12 HS3ST2 CADM2 TMSB4X PEBP1 CHGB KCNAB2 RPL13 GABRA1 CAP2 DYNLRB1 SGCZ NAPA TMOD2 MAPK1 DKK3 SPCS2 IQSEC1 GOT1 TRIM37 VAMP2 TSPAN7 RAB6B PSMC3 EGR3 STXBP1 HAPLN4 FBXL16 MMD SERPINE2 NPTX1 SEZ6L TGOLN2 AP2M1 SIRPA ACTB EIF1AX MYO1B USMG5 EPHA6 CHL1 GNG3 VGF ITFG1 NDUFS5 GNAQ PCSK1N RAP2A COX17 DCTN1 TMSB10 PCMT1 SPTBN1 RFC3 VSNL1 PREPL MAP2K4 SERINC3 PPP3CB PNKP MZT1 MFSD6 QKI CALM1 OPCML ARF3 GABRE ATP2A2 NTNG2 DNAJC5 TSPYL1 SGCD CARNS1 PSAP RP11-638L3.4 ATP6V1B2 ATP6V1A SPOCK1 UBA1 PITHD1 TMEM230 PRKACB NRGN SLC38A1 SPRYD3 KCNK1 WSB2 UCHL1 GPR158 DYNC1I1 SLC17A7 CYCS ARFGAP2 RPL17-C18ORF32 ATP6V0C IDS MTRNR2L6 RPL17 RP11-20I23.1 RPL6 PPP3R1 CDH8 DNAJC21\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "cortical layer 5-6 excitatory neuron" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: SYT1 SNAP25 RPL36A RAB3B SYTL2 DNAJC21 MT-CO3 MT-ND4 ATP2B2 MTRNR2L1 BIRC5 RPL41 CHN1 RPL37A RPL38 SYN2 PPP3CA HTR1F NPTX1 TBR1 ACTR10 GPR98 NAP1L2 MT-CO1 GPM6A ANO3 PGK1 TSPYL1 CALM1 ATP5J2 FIBP CNTNAP3 OXCT1 YWHAQ NREP KLHL5 PSAP PRDX1 NEUROD2 ASAP1 MT-ND1 TMEM150C SNCB ADAM23 RLIM MED10 SUMO3 TPRG1L NRCAM COX4I1 RTN4 MZT2B MT-ND3 GNAQ CLU NCEH1 CRKL RP11-111M22.2 MAP1B VDAC3 TBCA HSP90AB1 YWHAZ CLSTN1 CKB MYRIP CALM2 BASP1 NELL2 TMEM65 TSC22D1 MORF4L2 LDB2 CADM3 GDA GRIN2A RPL26 NDFIP1 PLEKHH2 RAB6A NFIA RAB1A TMOD2 UCHL1 RNF182 WASF1 PRKCB PRDX3 DNAJB6 SNAP91 CREG2 PCDHA9 SPARCL1 MT-CYB BSN FOXP2 PCDHB4 RELN MTRNR2L6 AC244489.1 NR1I3 PCDHGA6 PTCHD4\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "cortical layer 5-6 excitatory neuron" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MT-CO1 MT-CO3 TBC1D15 SNAP25 MT-ATP6 MT-ND4 MT-CO2 MAP1B MT-ND3 MTATP6P1 RAB3B SYTL2 MT-CYB MT-ND1 MT-ND2 SYT1 CHN1 CTNNA2 BIRC5 RPS28 RPL13A RP11-111M22.2 RTN4 NPTX1 RPL31 BASP1 MTRNR2L12 ARFGAP2 ESCO2 ARHGAP35 SPARCL1 TMOD2 YWHAZ CALM2 FTH1 RPL17 RPS12 SLC17A7 TMEM59L OLFM1 GUK1 RAP1GAP2 PRKACB GAPDH PIK3R1 UQCRB LMO4 PEBP1 PRKCB CALM1 PDP1 RAB6A SNCA ENC1 B3GALT2 TEFM SSTR2 STXBP1 MTRNR2L8 RTN3 ATP1B1 IDS SYN2 BAG4 RPL38 NUAK1 VAMP2 MTRNR2L1 CYB5R3 TF CDC42SE2 RPL21 PCDHGA5 NR1I3 HNRNPA1P40 HMGCR PGAM1 RPL8 MMD RPS15 RPS2 FXYD7 SNX3 PRDX1 SPAG17 NDUFB11 RNF11 RPL41 ANO3 DLL4 NARS SLC9A6 YWHAB MDH1 ZFAND5 PI4KA PINK1 PKM PFKP ATP6V0B ATP6V1B2 KCNMB4 USMG5 MOXD1 TOLLIP STK39 RPL35 SCD5 PLD3 LINC01296 HEATR4 TCEB2 CAMKK2 DKK3 ATP2B4 CADM2 SEMA3A PSMD12 CDKN2D PPIA NUDT21 TMSB4X PGM2L1 RPL15 SIRPA ATP5F1 CDK5R2 RPL6 RTN1 GNAQ EHD3 ATP5A1 PNKD DNM3 RELN KCNA1 CTBP1 NPTX2 GPCPD1 TPI1 GRIN1 GDA CRKL HMGB1P8 GABARAPL1 TAGLN3 MTX3 NDFIP2 ELAVL2 RPS4X C19ORF43 RAPGEF5 NCKAP5 SULT4A1 NRCAM SELT TSPYL1 NGFRAP1 ATP6AP2 GLO1 NDFIP1 SUMO3 C1ORF52 SERINC1 TSC22D1 UTRN SARAF ALKBH1 TRIM36 PSMB7 AP2M1 SRP14 CHL1 PSAP LMO3 AK5 LZTS1 PPP2R2B PRKCG PCBP1 QDPR CLTC NELL2 IGFBP5 LIN7B UROS MZT2B MAP2K1 SERPINF1 MPP1 RANBP1 EIF1 PCSK1N WDR47 BSN PRNP C16ORF13 GPM6A GABRA5 ISCU C11ORF84 BEX1 EPB41L3 C12ORF57 TUBB2A FBXW11 MORF4L2 RABAC1 GDI1 CPE FAM3C NGRN SNAP91 SLC6A17 SMYD2 RAB2A LRP1B SH3RF1 MORF4L1 KIF1A UBE2D2 FAM84A PREPL SYT4 PTMA RPS6 CA11 RAB40B COMMD6 VGF MRPL51 SPOCK1 ATP6AP1 SLC24A2 RPL13 NCAM2 NDUFS6 ACTB INSIG1 SEPW1 NFIA VAPB SEZ6L PJA2 PPP2CA EIF4G2 CAB39 SSBP3 KLC2 MAGED1 MPPED1 NDUFA5 SYNGR1 PEG10 MTPN SPCS2 PNMA2 TUBA1B ETS2 ATP1A2 SYNJ1 KIF3C OCIAD1 ID2 NECAB1 ADD2 BSCL2 TMEM70 KRT17P6 SERF2 MIF TUBB AC244489.1 CFH\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "cortical layer 5-6 excitatory neuron" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: TBC1D15 SYTL2 CHN1 SNAP25 SYT1 MT-ND3 NPTX1 ZNF385D OR6D1P KIFAP3 PPP3CA YWHAZ EPHB6 PLD3 NEGR1 TSC22D1 GABRA1 CLU CALM1 C4ORF3 PSMD12 PEX5L STK39 RAP1GAP2 KRAS RTN3 JUND HHATL LMO4 BLVRB CLIP2 PCDH17 FGF12 CALM2 RLIM STMN1P1 MDH1 DGKG PIK3R1 SLIT1 DAB2 GRM3 TPD52 MAGEH1 MANBAL MRFAP1 QDPR COPRS OLA1 RPH3A TSPAN18 LGI3 EFHD2 ZNF365 PAFAH1B2 MT-CO2 DHCR24 PJA2 SERINC1 MAPK8IP2 MT-ND1 RCAN2 SUMO3 ELAVL4 SLC24A2 FAT3 TEFM SYT13 RP11-454L9.2 ACTG1 COPS8 RAPGEF5 LMO3 PRKCB SERINC3 DCLK1 TCEAL2 TM2D3 PPP3R1 SAP18 WASL PFKP ATP1B1 SYNJ1 CADM2 OPRM1 COL24A1 MT-ND4 HMP19 ATP6V1C1 TGOLN2 KCNAB3 CKB NDN LINGO1 SARAF NELL2 PCYT2 VAMP2 ATP1A2 GPM6A PREPL PGAM1 CAMK2G IDH3A OLFM1 NEFL MYEOV2 ITPR2 STX1A MBP HIGD1A ACTB DYNLL2 BAI2 TSPAN7 CDH7 MTRNR2L8 RHEB C11ORF31 IDS GSK3A RPS28 AC244489.1 RAB3B\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "cortical layer 5-6 excitatory neuron" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: SNAP25 RAB3B PRNP MT-ND4 CABP1 MT-ND3 CHN1 RP11-111M22.2 CPLX2 NPTN ELMO1 CADM2 TBR1 GNB1 TLE4 VAPB RPL31 KCNH5 GPM6A CLSTN2 NDFIP1 NPTX1 RTN1 ZNF385A SYT1 MTRNR2L12 MT-ND2 PLEKHH2 CPE MT-CO3 CFH RPL35 CLSTN1 ATP6V1G1 THY1 FTH1 RPL11 NBL1 TBCB FKBP8 CTSD SH3GL2 FILIP1L EIF4A2 ATP5B SIRPA HSP90AB1 FAM84A DPYSL2 CADPS2 ITM2C RTN4 ACTG1 MAP1B SSBP3 THYN1 SPTBN1 CAMKK2 CDK5R1 JUN NDRG4 MT-CO1 TMEM130 NECAB1 CCT5 MT-ATP6 SCN1A ATP5A1 MORF4L2 ARF3 MME ATP1A1 IPCEF1 PCMT1 IDH3A LRMP SPOCK1 NAPB SUMO1 RPL38 SLC24A2 GLO1 PLCB1 PTK2B MLLT11 ADAM23 SYT3 KCNK1 NHP2L1 SLC7A1 GRIN2A CSRP2 ATP2B2 NDFIP2 SDC2 HTR1F KCNMB4 MT-ND1 HAMP CALM2 MTRNR2L1 SNX10 MT-CYB TOMM70A TNFAIP8L3 FGF12 POLR2M NEGR1 PREPL OR6D1P TMOD2 MDH1 LPPR4 NAP1L3 STX1A ATRN SMIM13 ATP5I ANKRD18A GABPB1 MYEOV2 TPD52 HSP90AA1 ATP1A3 FER1L4 LYNX1 LMO4 RAB6A PHYHIP RPL37A SDCBP RPL13A EID1 NRCAM RFK GSTT1 CDC42SE2 RAB6B PNMA2 IDS TUBB3 BSCL2 ATP6V0C RP11-20I23.1 RP11-219A15.1 PCDHAC1 PCDHA4 PCDHA9 PCDHA10 PCDHGA10 PCDHGA5 PCDHGA6\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "cortical layer 5-6 excitatory neuron" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MT-CO1 MT-ND4 RAB3B MT-CO3 MT-ATP6 MT-ND3 RP11-111M22.2 SPARCL1 NPTX1 MT-CO2 MTRNR2L12 MT-CYB MTRNR2L1 PEX5L DIRAS2 GPM6A MT-ND1 SNAP25 ZNF385D PSD3 FAIM2 PDP1 MTATP6P1 SSTR2 CLU ARFGAP2 RPL36A RTN3 TSPYL4 INPP5F TBR1 PGM2L1 PRNP TLE4 CADM2 NFIA SSBP3 PIK3R1 PRKACB SLC39A10 SYT1 ATP2B2 RPL31 ESCO2 RPS12 ATP1A1 NECAB1 MT-ND4L NDUFA1 FTH1 RTN1 MTRNR2L8 SYT11 ATP2A2 RAB2A HSPE1 MAP1B RELN PCDH17 CHL1 TMEM59L SKP1 NHP2L1 ATP1A3 NDFIP1 PRKCB DKK3 SARAF RPL37A MT-ND2 CALM1 KCNH5 CHN1 HSP90AA1 HOMER1 CD24 DYNLL1 CALM2 NPTN DPP6 SLC9A6 NR1I3 RP11-219A15.1 IDS CALM3 RPS15 CHCHD2 GUCY1A3 CHGB ANAPC13 HMGCR COX8A RP11-959F10.5 PLCB1 CDC37 CABP1 PJA2 UBQLN2 PI4KA NRGN MAP2K2 NMNAT2 CRKL SYN2 LPPR4 PPP1CB CNTNAP3 TMSB4X ANO3 CDH7 CKB CREG2 ZCCHC17 TCEB2 BCAP31 NDUFA5 FBXW11 SCN1B SCN3B PHYHIP HS3ST4 NDUFB3 SPOCK1 CA11 MYEOV2 PRKAR1B RAB3C CNTN1 ATP6V1C1 UBE2D2 PEBP1 CADPS2 ATP2B4 GABARAPL2 CAMK2D LINGO1 KCNC3 GHITM SYNGR1 ATP6V0C BSN AURKAIP1 BSG NDUFS6 RXFP1 TMEM130 OPCML KCNMB4 GPR158 PGAM1 GRIN2A CTSD RNF212 CAMKK2 TUBA1A FXYD6 FLOT2 TSC22D4 PTPRM OAZ1 FTL WBP2 MT-ND5 THY1 MAP1LC3B SH2D6 SUCLA2 PAPPA MTRNR2L6 EIF1AX CLSTN2 RPL21 PNMA2 NCEH1 UBE2E3 NGFRAP1 CCDC152 C3 EIF4A2 IPCEF1 LRP1B SPOCK2 NDFIP2 CPNE8 CDC42SE2 TSPAN7 RP11-20I23.1 POLR2K CLTC CTXN1 MRPS7 VWA5A CYP26A1 SUMO2 FBXL16 SYNJ1 DDAH1 SNX3 PPP3CA CACNB1 APP SCN2B NAT8L RPS19BP1 YWHAB PGK1 SERINC3 UCHL1 CYP26B1 STPG2 ENO2 PLD3 SLC12A5 MAGEH1 HRK PITHD1 FOXP2 ATP6V0E2 TESPA1 CAPZA2 SYNPR ANXA7 NDUFS5 CEND1 PTCHD4 SEMA3A FXYD7 COL5A2 BEX1 ATP5E GAP43 SLC1A2 KLHL5 NEFH RPRM RPS28 GRM3 VSNL1 ARF3 RPL39 DCLK1 ZFAND5 STX1A CLSTN1 NDRG3 DUSP6 WASF1 CX3CL1 RPL32 WLS SMIM13 COL6A6 PTK2B ETV5 NAP1L2 COPS7A IGSF21 FILIP1 DYNC1I1 TUBA1B BAI2 B3GNT1 TOMM20 SRP14 ROBO2 RPS26 RPL7 GNAQ C7ORF50 RTN4 NCDN TMA7 CLEC2L BMP8A ATP1B1 OCIAD1 STMN2 NDUFB1 SYT5 SLC8A2 GLUL YWHAG TMEM65 ENC1 AZIN1 KCNA2 SCN1A LMO4 OXR1 CISD1 NFE2L1 TF RNASEK-C17ORF49 RPL17 RPL6 RPL17-C18ORF32 FAM3C RPL3 NGRN RPS3A RPS2 TUBB AC244489.1 SYTL2 TBC1D15\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "cortical layer 5-6 excitatory neuron" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MT-CO3 MT-ATP6 MT-CO1 MT-ND4 MT-CO2 CHN1 MT-ND3 SYT1 PRNP MT-ND2 MTRNR2L12 MT-CYB SNAP25 PPP3CA SYTL2 RNF11 CLU MAP1B VSNL1 RP11-219A15.1 AK5 SARAF RTN4 CALM3 MOBP STMN1 MTRNR2L8 KCNA1 ACTB CABP1 CREG2 MT-ND1 ENC1 ATP1B1 MT-ND4L RP11-111M22.2 NPTN GRIN2A THY1 ENO2 DCLK1 PJA2 SERINC1 RAB40B PTPRN ITFG1 PRKACB PRDM8 TSC22D1 FTH1 COX7B CDK5R1 APLP2 NARS CLSTN1 GPX4 DYNC1I1 SLC17A7 CPE STMN2 DKK3 AP1S1 NRGN CAP2 NPTX1 FAIM2 MTRNR2L1 PNMAL1 NECAB1 MTATP6P1 WASF1 FAM198B FXYD6 CSDE1 GPM6A ZNF365 RHEB TSPYL1 PREPL SLC39A10 RTN3 BCAT1 ATP1A1 TOMM7 NUAK1 CNTN1 OXCT1 PTMA CA11 BIRC5 TF CFH DPYSL2 SOD1 GSK3A SPARCL1 BSG ARL6IP1 CD99L2 ATP9A TPI1 MRFAP1 KIF3C RELN BEX2 SNX10 CHP1 SCAMP5 SPOCK1 PFN1 BAG4 COPS8 NFIA CALM2 CCDC25 SYT4 RAN MFSD2A PPP3R1 HSPB1 LDB2 SPRYD3 ETS2 SERINC3 TPT1 ATP6V0E2 MLF2 CKB MTCH1 ZBTB18 PIN1 ATP5C1 TM2D3 NRN1 EFHD2 C16ORF13 UBL5 MFSD6 JUN NRCAM PCDHGA5 LMBRD2 AP3S1 SERPINE2 REPS2 NDUFA11 RPL38 WBP11 SIRPA PNKD YWHAH OPN3 COX6C CADM3 SRD5A1 RPL23A MOXD1 ATP5E NELL2 NDUFB5 ATP6V1B2 SERTM1 FIGN C3ORF80 IGFBP2 UBQLN2 AP2B1 JUND PIP4K2A BAI2 AZIN1 HRK RP4-635A23.4 FKBP4 GDI1 ANAPC11 ATP5I RHOB CCK ARHGDIG SERPINI1 TUBB4B CACNB1 HOMER1 RTN1 SNCA ATP6V1C1 MYL6 SSTR2 FKBP8 ISCA1 OPRM1 HDLBP DNAJB6 PCDH19 MANBAL PTPRS SLC12A5 RSPO3 CALM1 NDUFS5 PLEKHH2 GADD45GIP1 SKP1 APBB1 TMSB4X USMG5 STMN4 FKBP1A PTPRT ARPP19 CTNNA2 RPS10 PPIH TMEM130 EXTL2 SNCB PAPLN BRK1 TMEM158 PEG10 RELL2 LYSMD2 PCDH17 ACTG1 PRKCG CAMK2G SLC9A6 IDS TMEM70 ANKRD26P3 RAB6B SEMA3A GOT1 ALDOC SCOC NOP10 ZCCHC24 CDC42SE2 RAB11A ENSA GPR116 TESPA1 SYT5 EIF4A2 VAMP2 CPLX1 APP NAP1L2 C1ORF115 LMO3 NBL1 CDK17 ATP6V1G1 FABP5 CD63 SULT4A1 SNAP91 RAB6A PRKAR1B NDUFB7 GNB1 PFKP PPP1R9B SYN2 CDK5R2 INPP5F MAL2 WASL COA4 RPL11 ASAP1 YWHAB SLC22A17 UHMK1 HSP90AB1 NREP SEPW1 NFE2L1 UQCRC2 CCT5 SUCLA2 LMBR1 C16ORF93 PGAM1 TUBA1B TCEAL7 UCHL1 PLCB1 PDP1 ITPR2 UQCRH NEUROD2 HCN1 LINC01296 PSMC1 IPCEF1 LDHB ALDOA MIF ATP6V1G2\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "cortical layer 5-6 excitatory neuron" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MT-CO1 MT-CO3 SYT1 RAB3B MT-ATP6 MT-ND2 RPL37A MT-ND4 SNAP25 MT-CO2 PPP3CA SYTL2 RPL31 MTRNR2L12 GPM6A MT-ND1 CLU ATP1B1 CNTN1 RP11-111M22.2 ARFGAP2 SLC24A2 ARL6IP1 RAB6B RTN1 NAPB HSP90AA1 VSNL1 RTN4 ATP5G2 ENO2 NCAM2 YWHAG THY1 RPL38 TMSB10 CPLX2 ARPP19 MT-CYB PIK3R1 SPARCL1 STMN2 RPL26 PEX5L TMSB4X LMO4 KIF5A NRCAM TSPAN7 B3GALT2 FAIM2 SCG2 RPL21 SERINC1 GRIN2A RPS27A PNKD FXYD6 PPP3CB RPL39 PREPL CADM2 TPPP ATP5J MAP1B CHN1 NECAB1 SLC1A2 VIP RPL7 RTN3 CHCHD2 ARL4C GLO1 PTPRN ACTB DPP6 DYNC1I1 RPL11 SNAP91 CALM1 ATP2B2 EIF4A2 RGS12 WASF1 CDH13 PSAP NUAK1 CALM2 MRPS21 APP MTRNR2L1 AC244489.1 PTPRS SCD5 GNAQ AP2M1 MTATP6P1 PKM FTH1 SYNPR PEG10 PRKCE ANKRD18A GOT1 GUK1 PRKCB NDFIP1 SLITRK1 UQCRB SCN1A MTRNR2L8 CHMP4B SLC9A6 DYNLL2 SYT13 CNTNAP3 DIRAS2 TBR1 RPS12 VAMP2 SERF2 SLC17A7 CLTC KCNC2 DACH1 HINT1 ATP1A1 APLP2 AES OXR1 ZBTB18 NEGR1 RPS10 RPS3A RAD23B RPL19P18 UQCRC2 UBE2QL1 ITM2B MT-ND4L GPX1 GDI1 CCK RCAN2 NPTX1 CALM3 SERINC3 TSPYL1 SERPINI1 PDZRN4 TAGLN3 RP11-44D5.1 ATP6V0B KIF1A MT-ND5 KIFAP3 NPAS3 RPL32 SLC39A10 CPE CKB FAT3 RELN C14ORF2 PITPNA MT-ND3 CYP1B1 DPYSL2 CTSD DLX1 YWHAZ TMEM59L FIGN BASP1 RPL36A ATP1A3 PCDHGA5 PDP1 TEX2 FAM131B PPP2R2C CHST11 CLSTN1 ELAVL2 PNMAL2 ZNF804A NDUFB3 SMS MRFAP1 TUBB4B SCN3B TCEAL2 TRIL B3GNT1 EIF1B PPP3R1 SKP1 CSDE1 COX7A1 MAGED1 SUB1 MAP2K4 TRIM37 EIF4G2 CADPS2 PRKACB CREG2 NTNG2 RPL15 GABRA1 MAP7D1 AP2B1 GABARAPL1 MRPL52 CD24 OLFM1 PLCB1 DCTN1 CLTB PFDN1 GUCY1A3 SPOCK1 OCIAD1 RHBDD2 SULT4A1 KIAA1211 CYCS TMEM35 NDRG4 GNB1 CA10 ACTR1A SLC12A5 ACTG1 ATP5O SPTBN1 HMGCR ZBTB20 REEP5 ENC1 ZNF536 SCN1B ISCU UQCRH ELAVL4 MORF4L2 ATP6V1E1 SEPW1 DNM3 OPRK1 SLC24A3 SUMO2 DNAJC6 SLC25A4 LPPR4 NRN1 VSTM2L PFKP NFE2L1 ATP5J2 SELT NDFIP2 ACP1 APLP1 EID1 SGCZ TCEA2 RPL23A CLSTN2 UTRN RPS15 RPL41 CLTA LGI3 SLC25A6 PAQR9 GYG1 RPS6 LZTS1 STXBP1 DYNLRB1 C1ORF52 HOMER1 BIRC5 SOD1 RAP2A TTN HPRT1 MAP2K1 ATP5H VAPB ERBB4 YWHAB RND3 MAPRE2 FAM84A CEND1 BAI2 ATP2A2 SLC7A5 LMO3 TMOD2 PPP2R2B PENK NWD2 WBP11 CDK14 GDE1 CDH8 CNRIP1 GRIK3 MTND2P28 MARCKS SYN1 PAFAH1B2 DGAT2 TSPYL4 NDUFS5 VAMP1 ATP6AP2 ADSS PTK2B RPL13 RGS4 RAB4A BEX4 NFIA ZFAND5 COA3 FGF12 IMMP1L FAT1 HNRNPH2 PHYHIP STMN1 LINC00086 CAB39 ECM1 CTBP1 CACNA2D2 ADAM23 GRINA CD63 MLLT11 CA11 RPL12 REPS2 RPS28 COX6C HCN1 SNX10 ITM2C MAPRE3 FBXO2 TBCB COX7A2L YWHAH UQCRQ PRNP SCOC KCNA1 RPL10A TESPA1 NEFM RAB2A ATP6AP1 ALCAM LUZP2 ATP2B4 COX5B NDUFV1 STMN4 CABP1 COX7C ALS2CR11 WDR47 TRIM36 EFR3A RPL13A TPT1 PJA2 NEUROD6 HSP90AB1 EFHD2 NDUFC2 EGFR KLC1 ATP6V1A SYT4 SAMM50 MRPS7 SEC61G NAP1L3 SARAF SEMA5A FUNDC1 ZBTB39 AK5 IQSEC1 DKK3 DNAJA1 RAB3IP C1ORF95 BAALC PPP2R4 RPS2 NPTXR WSB2 NGEF INPP5F PNMA2 ASAP1 TSC22D1 SAP18 RAB40B GAPDH CTNNA2 CDK17 UQCRC1 SEZ6L2 PSD3 PSMC3 ATP5I TGOLN2 SPRYD3 RNF11 CDK5R1 PRUNE2 CAMK4 ITFG1 VGLL3 SEZ6L SNN SEMA3A CHL1 PSMD2 CAP2 CADM3 RP11-20I23.1 ATP6V0C BSCL2 GTF2H2C_2 ALDOA NSF RPL3 MTRNR2L6 IDS MBOAT7 PCDHA9 PCDHAC1 PCDHA4 PCDHA10 HNRNPA1P40 PCDHGA10 PCDHGA6 TBC1D15\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "cortical layer 5-6 excitatory neuron" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: SNAP25 RAB3B HNRNPA1P40 SYT1 RP11-111M22.2 ZNF385D CHN1 SEPW1 MTCH1 NRGN TMEM59L MT-CO3 NFIA CADM2 MAP1B BIRC5 OR6D1P TUBD1 SYTL2 ATP2A2 CADM3 PPA1 PDLIM5 UCHL1 MZT2B DNAJC5 FAIM2 GNAQ SLC17A7 SPOCK1 ATP6V1B2 SUB1 THY1 NUDT21 PTMA NDUFB2 NECAB1 SYT11 DKK3 HSP90AB1 BEX1 CALM1 SNCA MAP4 PEG10 TCEA2 RPL7 ATP1A3 CAPZA2 C7ORF50 TMEM14A TCEB2 NARS SARAF LIN7B SLITRK1 RPL38 HOMER1 CLSTN1 PIN1 C1QL2 EPHB6 SYT4 PGK1 HSP90AA1 NDFIP1 PRKAR1A CERS6 DSTN SERPINE2 MRPS21 PPIH MT-CO1 MORF4L2 NRCAM MYL6 PFKP RPS4X SPTBN1 GDA RAP2C MAP7D2 C14ORF2 SYNGR1 CDC37 ACTG1 RPL31 OLFM1 COL6A1 MRPS7 ADAM33 ASAP1 MAG RPL37A LYNX1 ANXA1 C12ORF49 ATP5B COA3 HHATL CKB UROS NPTXR PEBP1 MT-ND4 PAM ATP5J2 MAP1A YWHAZ ATRN TPPP PRDX5 TBR1 SYT3 GPM6A RPL41 RPL26 PET100 TMSB4X TUBB2A BRK1 CALM3 TSPYL1 NDUFA11 KCNAB2 AES TUBA1B S100A6 GTF2H2C_2 CALM2 GUK1 COX4I1 ATP1A1 CTNND2 TCEAL7 ATPAF1 RXFP1 KIF25 AIMP2 ASPDH ETS2 REEP2 ACTB IGFBP5 LZTS1 TGOLN2 DGKG GRIN2A SV2B SLC12A5 PRKCE RPL10A FIGN MAGED1 GABRG1 BSN STXBP1 OLFML2A ADORA1 SIRPA RGS8 DYNLL1 SNRPE CAMK2G MAFB SLC7A8 KCNMB4 RPL17 SULT4A1 ATP9A UBL4A PDP1 RPS15 RTN4 ELAVL2 AP2M1 USMG5 COMMD6 EIF4A2 RTN3 PCBP1 HINT1 ATP6V0D1 ALCAM UQCR11 ABRACL PJA2 TERF2IP TPD52 YWHAH LMO3 NDFIP2 GRIN1 MTRNR2L1 NBL1 CDK5R1 SMIM12 NDUFAB1 RAP2A COPRS UBE2M TOLLIP ZNF350 TIMP2 HEBP2 SNAP91 FAT1 TMEM141 B3GNT1 ANAPC11 ZFAND5 FTL DYNLRB1 LINGO1 ZNF208 RPL13 CLEC2L GOT1 GAP43 IDS KIF5A CCDC124 AHNAK2 RAD23B ATP6V0E2 ARHGAP6 HSPA4 CDH13 PCSK1N TMA7 ANKRD18A TM2D3 HMGCR OPCML POLR2L PFN2 FAM84A ST6GALNAC3 SLC19A1 RPL32 PINK1 NCEH1 STMN1 DNM3 NPTX1 SYT10 TAC1 TMEM230 FKBP1A TMEM35 FXYD6 PI4KA OAZ1 ATP6V1G1 RP11-219A15.1 CNTNAP3 RPL13A ATP6V0C HMGB1P8 RP11-20I23.1 RPS3A AC244489.1 PCDHGA10 PCDHGA6 PCDHGA5\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "cortical layer 5-6 excitatory neuron" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MT-ND4 SYT1 MT-CO2 MT-CO1 MT-CO3 MT-ATP6 RAB3B CHN1 MT-ND3 SPARCL1 DIRAS2 SNAP25 ATP1B1 RTN1 ENC1 MAP1B PGM2L1 VAMP2 PTMA MTATP6P1 TMSB4X SCN3B MT-CYB OLFM1 ACTB RTN3 TUBB2A APP STXBP1 YWHAG ACTG1 MT-ND2 ATP6V1B2 TBR1 SNRPN CALM2 HNRNPA1P40 HSP90AB1 STMN2 PSAP AK5 CADM2 NFIA PJA2 KLC1 UCHL1 NDRG4 MTRNR2L1 MT-ND1 KIF1A NGFRAP1 RPRM NDFIP1 OAZ1 NAPB BSN SLC17A7 PSD3 MT3 GPM6A RHEB RP11-111M22.2 ASAP1 CTSD NHP2L1 ENO2 ELAVL2 RNF11 APLP2 ALDOA SV2B CPE BEX1 CALM3 ATP1A3 PKM SEZ6 CAMK2D THY1 CALM1 NCALD CAP2 GAP43 LMO3 LYNX1 CYFIP2 PREPL YWHAB SPTBN1 LMBRD2 STMN1 SULF1 ATP6V0D1 YWHAQ SLC6A17 CLTC HSP90AA1 ATP9A GRINA RAB3A DPYSL2 SCG2 TSPAN7 TUBA1B ATP2B2 PGRMC1 GUCY1B3 SNCA TOLLIP OXR1 TMEM14A TUBD1 MTCH1 GNAQ PLCB1 GABRA5 GUK1 PCSK1 NECAB1 ARFGAP2 IDS RP11-20I23.1 ATP6V0C NR1I3 SPOCK2 SYT11 RPL26 SLC12A5 ITFG1 FAM131B ADD2 SYN1 MT-ND5 GRIN2A SUB1 PRKAR1A PRNP KIFAP3 CRIM1 NRIP3 MT-ND4L NNAT RGS4 CRYM TERF2IP KIF21A RTN4 DYNLL1 PPP3R1 PNMA2 PDE1A PRKCB SULT4A1 ATP5A1 TLE4 ENO1 SLC1A2 MORF4L1 PPP3CB ARL8B PPP3CA PPP2R2C RAP2C WBSCR17 BCL11B DNAJC5 MAL2 RAB6A UBA1 TMEM130 DNAJC6 BIRC5 DIRAS1 NAP1L3 KIF3C PFKP NREP EFHD2 MTRNR2L6 ZNF385D SYT13 ARHGDIG RHBDD2 MTRNR2L12 FBXW11 PCMT1 C19ORF43 SERPINI1 ATP5G1 CNTN1 AP2M1 RAB6B SERPINE2 TSC22D1 GRIK3 YWHAH NARS UBE2QL1 MAPRE2 CDK5R1 MANBAL SUMO2 MTRNR2L8 GPX3 RPL13 CABP7 STRAP PLCXD2 SMS MAPK8IP2 CHGB ITM2C CLIP3 PMEPA1 PHYHIPL SLC38A1 INPP5F PNKD MDH1 ATP6V1C1 RPL37A ARF5 MRAP2 PSMC5 EIF4A2 INSIG1 OCIAD1 RPS15 COX7C SYT17 NXPH3 SPCS2 TMA7 MRPL33 RPS3A C1ORF115 EPS15 ATP2A2 HDLBP ATP6V1F SKP1 USMG5 PNMAL2 PPP2R1A NRGN RPS28 CSDE1 PAK1 AP2B1 WDR47 MYL12B ATP6AP2 C14ORF2 GHITM MSMO1 KCNF1 RXFP1 CMAS CLSTN2 BSG SERF2 VDAC3 SELM HSPE1 EIF4G2 UHMK1 PCP4 CIAPIN1 PET100 PPP1R9B BASP1 BAI2 STMN3 SYNJ1 CNRIP1 PRKCE CTXN1 SEPW1 MGST3 PPP2CB ARL6IP1 PSMB5 ADAD2 MBP COX8A CD99L2 PEBP1 SNX10 UQCR10 RBX1 PRKCQ SCAMP5 RPL31 CTGF SSTR2 FBXL16 IPCEF1 SUMO3 NPTX1 MAGED1 RPL18A UROS TLN2 SCOC CLSTN1 TMSB10 DNAJB6 HS3ST4 MAP4 NUDT21 RAP1GAP2 NGEF SDK2 FAM127A NPTN NCDN HN1 EFR3A NBL1 PFN2 GPX4 CNP YWHAZ EIF1 EDIL3 SIRPA NDUFA13 ESCO2 TBC1D15 MIR6723 TRIM37 SEMA4G SOD1 AP2S1 NRCAM EIF1AX BEX2 SH3GL2 CCDC85B APLP1 UBC GABRA1 FSCN1 TRIB2 EPHB6 ARL2BP TUBB3 SLC25A22 GADD45GIP1 FTL CFH COX14 PDE9A CABP1 COX5A PLP1 MAPK1 CYC1 ATP5F1 CACNB1 EID1 TPD52 LSM4 VSNL1 PRKAR1B KIF5A SYT6 B2M FARSA HNRNPH2 TMOD2 SYN2 APBB1 NAP1L2 TAGLN3 TMEM132D LRFN3 NEFM SEC61G RPL12 NUAK1 C7ORF50 C6ORF1 MORF4L2 SLC22A17 MFN2 ARPC4 AC073264.6 TMX4 ROBO2 PPP2R2B FKBP1A IDI1 GCHFR FAM198B LAMTOR1 PPA1 TNS1 SLC24A2 SIGIRR GABRA6 GAPDH MARCKS NDUFB8 RAB37 POLR2K MAP2K1 CHRM2 NEK7 CISD1 BNIP3 ELMO1 KLHDC3 YAE1D1 NDUFS6 LINGO1 SRP9 HSPA8 TKT CDKN2D COX5B LGALS1 ATP5G2 NDUFB2 BAG4 FAIM2 TTYH2 RAPGEF5 C16ORF13 NFE2L1 REEP2 GOT1 CHP1 COPS8 CAMK2N2 CFL2 PTPRN NOP10 ANXA6 ZBTB18 DRAP1 THBS2 FAM84A TOMM20 MRPS28 SLITRK1 RAB11A ATP5J RAD23B STMN4 CKB NDUFB10 CLU SEZ6L RAB2A LINC00116 PNMAL1 NDUFC1 IDH3A HPRT1 BAD TPT1 CHMP5 PPP1CB KCNK1 NIPA1 BEX4 MLLT11 ABRACL TMEM35 AP1S1 CD59 WASF1 KLC2 SERINC3 DYNLL2 WSB2 BRK1 SLC9A6 VDAC1 ANAPC11 FBXL15 STX1B AZIN1 CITED2 FKBP8 HS3ST5 SERTM1 RPL32 CYCS ARL1 NGRN ATP6V1A GNG3 KRAS RFK MRAS FABP3 RPL38 PPM1A PIK3R1 LDHB PTGDS STK39 IGSF21 HPCA DNAJA1 RPS4X STX1A VEGFA SYNGR1 CTBP1 SOX9 CDK14 TSPYL1 OLA1 ARHGDIA RAB4A HMGCS1 RCAN2 PTGES3 DHCR24 PTPRT LANCL1 AES CPLX2 HOMER1 EEF1A2 NXPH4 ADAM23 COPG1 SCD5 B3GNT1 SPRYD3 ISCA1 SYT4 TEFM CHL1 NEGR1 PEA15 QDPR PSMC3 PITHD1 MLF2 RPS12 RPL8 HEATR4 PEF1 DYNLT3 DMTN LAMTOR5 PID1 LHFP RAN SERINC1 PACSIN1 PARM1 CCT5 DLD TUBB4A MRPS21 SLC2A1 BAALC NUDT4 SOX4 PDYN UBE2N GSG1L GDI1 RHOA SSBP3 NDFIP2 NEFL MAP7D2 OAT AKR1C2 RNF182 POLR2I NDUFB1 PSMD2 PEG10 CAMK2G ATP6V0E2 TSPYL5 PINK1 FAM163B EHD3 CPLX1 SDCBP SMIM13 TOMM22 TUBA1A PHB MAP2K2 SARAF EPDR1 KLHL12 PGAM1 PHYHIP RRM2B SERP2 ATP5I WASL UBL5 VAT1L CADM3 RASSF8 CDC42SE2 CYB5R3 COX4I1 JUND PLOD2 PSMC1 RPL11 NDUFA11 RPH3A AC244489.1 DCLK1 ARL6IP5 FOXP2 GNB1 RASGRP1 CDH24 HMGCR OSTN MTPN UQCRH CFL1 TCEAL2 FTH1 GPR158 MARCKSL1 TUBB4B FAM149B1 ATP5G3 CBLN4 GDA FIS1 UBE2E3 TBCB PCBP1 CHMP4B NAT8L COPRS CREG2 SPOCK1 FAM3C LRP1B PTPRN2 OR6D1P ALDH5A1 PRKACB PNMA1 UBB RPL39 CTNND2 HINT1 RPS27A ARPP19 MPPED1 TENM1 ATP6V1G2 RPL3 BSCL2 APOLD1 RPL41 RPL13A RPS2 PCDHGA6 PCDHGA5 PCDHGA10 PCDHA10 PCDHA4 PCDHA9 PCDHAC1\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "cortical layer 5-6 excitatory neuron" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: SYT1 ATP1B1 SNAP25 CHN1 CALM2 MAP1B SLC17A7 ELAVL2 CALM1 GPM6A MT-CO1 DPYSL2 DIRAS2 TUBA1B TMSB4X MT-CO3 HSP90AA1 APP VAMP2 ITM2B PGM2L1 RTN1 SERINC1 PTMA BASP1 MT-CO2 SLC1A2 PEBP1 HSP90AB1 MT-ND4 RAB3B ENC1 SARAF ACTG1 PLCB1 SYN2 EIF4A2 STMN1 RTN3 YWHAG ACTB DKK3 B3GALT2 TAGLN3 NDRG4 GAPDH GDI1 NPTX2 ITFG1 OAZ1 SLC38A1 PKM RTN4 TMSB10 FAIM2 CAP2 SLC9A6 PREPL TBR1 CPLX1 SUMO3 SNCA SSBP3 TLE4 FXYD6 GRIN1 SKAP2 NAP1L3 COX7C DYNLL1 PSAP PSD3 BEX1 SV2B SCG2 ATP6V0E2 TUBB2A CLSTN1 TSPAN7 STXBP1 SYNGR1 RPS15 TSPYL1 PPIA ARPP19 PRKACB CNTN1 OXR1 UCHL1 MAPK1 ARHGAP35 PGAM1 NRCAM CAMK2D HMP19 NREP CYFIP2 DHCR24 KIFAP3 DCLK1 ATP2B2 GNAQ GHITM IPCEF1 SLC6A17 ATP1A3 HMGCS1 NDFIP2 EFHD2 STMN2 PRKAR1B MT-CYB PGRMC1 MLLT11 YWHAH LMO4 PFKP RPL21 NPTN SYNGR3 NFIA MTRNR2L1 GNB1 NGFRAP1 STUB1 MTCH1 ELAVL4 IDS SUMO2 KLC1 ATP5B THY1 MTPN PDP1 SLC24A2 CDK5R1 ZFAND5 CPLX3 LMO3 RAB6B TOLLIP KIF21A ATP6V1B2 VSNL1 WBSCR17 TMEM158 BEX4 DNAJC6 OPRM1 CRYM PCDHGA5 CHL1 TUBB ATP5G3 NRGN SRP14 FKBP1A TOMM20 SPTBN1 NAP1L2 SCD5 RAP2A APLP2 C1ORF115 RAB2A CADM2 ETS2 SNAP91 RLIM CLU EIF1 DNER VDAC1 B2M SERINC3 TPPP JAKMIP1 SEZ6 SCN3B HMGCR CMAS MSMO1 PCSK5 MAP4 AP2B1 HN1 CLSTN2 SLC7A8 DYNLRB1 TMEM59L CKB PRDX3 NNAT RHBDD2 IDH3A MAGED1 SEZ6L PTPRN SH3GL2 APLP1 COX7A1 TSPYL4 KIF3C CHGB ADAM23 ARF3 ENO2 CAMK2G OLFM1 IGFBP5 FAM127A BSG LPPR4 RPS28 MT-ATP6 ENO1 PIK3R1 ATP6V0B CPE NAPB PJA2 ATP2A2 PPM1A SLC22A17 SYN1 PAK1 BAI2 CADM3 SULT4A1 SMIM13 TSC22D1 MDH2 GABRA1 PPP2R1A SERPINE2 CTNND2 TGOLN2 DNM3 UBC LMBRD2 CEND1 SKP1 SLC8A2 HS6ST3 TMA7 NUAK1 PEA15 ARL8B SULF1 RPL15 PRKCB VPS35 ARL6IP1 STX1A MAP1A SOD1 RNF11 ATP6V0C NSF RP11-20I23.1 ARFGAP2 CAPZA2 TBC1D15 PCDHGA6 MRAS YWHAZ TMEM14A CDH6 RNF208 ATP6V1F PTN ELMO1 KIF1A SDCBP PACSIN1 SERPINI1 ADD2 CX3CL1 VAMP1 TMEM200C PRNP MAP2K1 TUBA1A SYT5 ARF1 CLIP3 FTH1 DYNC1I1 PFN2 CBX6 TERF2IP NMNAT2 DDAH1 SERF2 NDFIP1 PPP2CA TCEB2 RNASEK-C17ORF49 SNRPN ID2 TUBA4A MTRNR2L12 ATP9A PDE1A CTGF PRKAR1A PI4KA RAB3C NXPH3 SUB1 EIF1B CSDE1 KCNF1 PHYHIP LSM4 YWHAQ JUND RPL35 MPPED1 FGF12 MAGEH1 SYNPO FAM134A FAM163B TKT MAP1LC3A UBE2D2 MZT2B MAP1LC3B RPL17 PPP3CA LAGE3 PNKD CFL1 CORO2B EIF4G2 C19ORF10 MTRNR2L6 PNMA2 TBCA RAB1A MARCKS KIF5A BCL11B GOT1 ACTR10 BLOC1S1 NUDT21 BEX2 MMP24-AS1 TPT1 HTR2A UBE2V2 LGI2 SELT OR6D1P TPI1 ATP5I PTGES3 ARF5 RPS27A APOD TMEM65 TUSC2 SYT4 AK5 GUCY1B3 ATP6AP1 ATP1B2 SPARCL1 TCEAL7 SNCB EFR3A ATP6V1E1 C14ORF2 MED10 STMN4 NCBP2-AS2 BAALC UQCRQ RGS4 PNMA1 ACOT7 PLCXD2 MAP2K4 ARHGAP6 DIRAS1 HINT1 PET100 PRPS1 MT-ND4L KLF10 IDI1 NRIP3 CAB39 ATP6V1A TUBB4B POMP EIF1AX SYT13 MAL2 SCAMP5 ALDOC SLIT1 GNG3 ATP6V1G1 PPP1CB C6ORF1 RPS4X NGRN RPL13 PTPRM KIAA1045 GABARAPL1 HTR4 KCNAB2 PFDN1 LINC00087 UBQLN2 SNX10 CCDC85B GABRA5 BNIP3 PAFAH1B2 TMX4 CFH UBE2M GNG2 PSMB7 RAD23B ENOPH1 CHMP5 GSTO1 ENSA SLITRK1 NDUFA4 ETV5 CYCS TOMM70A TPRG1L PIN1 YWHAB MORF4L1 TF NR1I3 MPP1 AES CITED2 PSENEN MT-ND1 ATP1A1 LIMK1 ST6GALNAC3 LYNX1 EPS8 FAM19A2 CHCHD2 LDHB MT-ND2 RP11-111M22.2 TCEAL2 ITGA6 B3GNT1 RPL18A ARL2BP SEMA5A OXCT1 AKAP12 MLF2 LAMTOR1 DOCK10 RHEB NIPA1 RAB4A PITHD1 MAPRE2 NME1 ARSJ HSPE1 CAMKK2 TMEM70 WASF1 PSMA7 UQCRH FXYD7 HOMER1 PRUNE2 CACNB1 DNAJB9 HNRNPH2 NRSN2 MZT1 C3ORF80 HS3ST5 CDH24 CAMK4 PSMD12 SPOCK2 ABHD8 SLC25A6 HS3ST2 SPARC RPL11 C1ORF52 PDCD5 NEGR1 INSIG1 CLTA OCIAD1 ITM2C ASPDH PCSK1 LAMTOR5 RPS2 SSTR2 SH2D6 BAG4 RCAN2 DEXI RAP1GAP2 INA DNAJA1 SMYD2 PPP1R9B PRDX2 CLTC NHP2 TUBB3 ATP5G2 RASGRP1 UBA1 MAPRE3 MT3 SDK2 PLD3 ROBO2 GMFB RRM2B ZNF425 BEND5 NEK7 SLC7A5 COX8A LDOC1 PPDPF CTXN1 CAMK2N2 CTNNA2 FTL TXN ANAPC13 KLHDC3 CTSD TUBB4A DGAT2 SAP18 MAPK8IP2 CAPZB CNRIP1 STRAP AP2S1 PSMD2 FBXW11 RPL41 KLHL5 TMEM150C C11ORF31 FASN SPR ARL8A PGK1 SELM PRKCG HK1 PELI2 RGS12 AGA ALCAM DPP6 CPNE2 MAOB SNX17 ID1 KCNK1 PCBP1 RAN EPS15 COL5A3 UBB RPL8 GUK1 CRIM1 MYL6 MAST3 DMTN EGR1 RHOB PHYHIPL RPL36A UBE2F CDH8 ADSS IRS4 CA11 GSKIP RRAGA RAB3IP PRDX1 DYNLT3 PDYN MBP CDC42SE2 PRIM1 GABPB1 ARPC5L RAB11A CLIP2 RPL38 DDN WBP2 RELL2 CCT5 ZNF365 QDPR NEFL RPS26 GSTT1 RPL23A TOMM7 EGFL7 RPL39 NGEF NDUFB5 MRPL20 RAB11FIP5 TMSB4XP4 KCNA1 TPD52 TBCB SEPW1 FAM84A RAB6A NFE2L1 EIF5A2 AP1S1 PPA1 NKIRAS1 TRIM37 PNMAL2 RSL24D1 C1D ATXN10 SEMA3A PDZRN4 VWA5A NDUFB3 DRAP1 HIGD1A WASL ZCCHC17 TMEM151A MRPL11 GPX4 CHRM2 DYNLL2 STX1B CD59 EID1 UQCRB PSMB5 NDUFB11 HCN2 NDUFC2 FARSA RASL11B WSB2 NDUFB2 GAP43 STK24 EPDR1 SAMD9 ATP6AP2 NBL1 PCSK1N GYG1 DCTPP1 RP11-173M1.5 SLC12A5 MANBAL NXPH4 PEG10 SEZ6L2 TMEM230 TMEM130 CALM3 SQLE GRIK3 PRELID1 MTATP6P1 SH3BGRL3 SPRN CTNNB1 NCDN CRIP2 IQSEC1 CADPS2 NDUFB8 NDUFB7 NEUROD2 FAM198B CABP7 MTRNR2L8 SLC9A1 FAM3C ARL4C MRPS21 PPP2R2B CDK14 GPR158 PTPRN2 UBE2QL1 CMPK1 PNMAL1 ISOC1 PINK1 TMEM155 C12ORF49 FKBP8 RPH3A PEF1 PTK2B SNX3 PAQR9 SIRPA NDUFA5 UBL5 C1ORF233 VEGFA NELL2 NAP1L5 PTCHD4 ATP5O RPL37A SLC39A10 ACTR1A FBXL15 CHMP4B CDHR1 KCNC2 UQCR10 BCAP31 CRYAB CDKN2AIPNL FAM174A SCOC APBB1 ISCU ASAP1 MYL12B NRAS USP5 NHP2L1 COX6A1 COX6B1 MT-ND3 RAB3A SNAPC5 TRMT112 H2AFZ MT-ND5 TMOD2 MRFAP1 SRP9 MGST3 DNAJC5 ATP6V1G2 ETFB ATP5F1 GABARAP RP11-219A15.1 ALDOA AC244489.1 RPS3A PCDHA9 PCDHA4 PCDHA10 PCDHAC1 HNRNPA1P40\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "cortical layer 5-6 excitatory neuron" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MT-CO1 MT-CO3 MT-CO2 MT-ND4 CHN1 SYT1 MT-ND3 NRGN SNAP25 CALM1 GPM6A MT-ATP6 MT-CYB CALM2 MT-ND2 MAP1B PRNP RTN1 TUBA1B MT-ND1 HSP90AB1 DIRAS2 SCN3B RGS4 STMN1 ATP1B1 RTN3 PPP3CA NPTX1 RTN4 IDS PNMA2 MAPK1 CALM3 TUBB2A CNTN1 MTRNR2L12 ACTB DPYSL2 THY1 EIF4A2 YWHAG MTRNR2L1 SV2B CLSTN1 DKK3 DCLK1 CLU TLE4 NDRG4 SERINC1 PREPL BASP1 SPARCL1 NFIA ATP2B2 ZFAND5 AK5 NAPB STXBP1 APLP1 NDFIP2 GRIN2A TMSB10 PRKACB PDP1 GABRA1 NPTN STMN2 PSD3 ATP2A2 SLC24A2 ACTG1 HSP90AA1 PKM TSPYL4 NRCAM APP NUAK1 SLC17A7 PPP2R1A FAIM2 IPCEF1 NDFIP1 RAB6B OXR1 MTPN ATP1A1 PSAP PRKCB KLC1 MTATP6P1 ITFG1 TMEM59L SEPW1 TMSB4X EGR1 SEZ6L CAMK2G DYNLL1 MTRNR2L8 PJA2 SLC9A6 SYT11 NELL2 SYN2 CADM2 YWHAZ TOMM20 ARL6IP1 TSPYL1 SERINC3 KIF1A YWHAB CAP2 SERPINI1 LMBRD2 FXYD6 NR4A2 CCK SLC1A2 ARPP19 CTGF GDI1 CYFIP2 VSNL1 ENC1 AP2M1 LMO3 ZNF385D MTRNR2L6 LPPR4 EIF1AX GAPDH CDK5R1 ITM2B PPIA TPI1 OCIAD1 PPP3CB WBSCR17 VAMP2 NAPA TSPAN7 SUMO2 PRKAR1A SPTBN1 ENO2 PRKCE MAP4 TBR1 APLP2 PPP2R2C NCEH1 UCHL1 TMEM155 RHBDD2 PGAM1 ATP6V0E2 LZTS1 SARAF TUBB MT-ND4L GRIN1 ATP1A3 CAPZB OPA1 KIFAP3 EFR3A NMNAT2 GNAQ SUMO3 NEGR1 PNMAL2 JUND SIRPA PGM2L1 CX3CL1 FSCN1 LANCL1 ASAP1 PLD3 LRP1B REEP2 SLC12A5 SYN1 SYNJ1 CAPZA2 ETV5 FTH1 PRKCG MPPED1 CAMK2D MARCKS PPP2CB SSBP3 FAM3C FXYD7 YWHAH OAZ1 ATP6AP2 MTCH1 TOLLIP DNAJC5 SCAMP5 RAB3A UBE2QL1 MIR6723 PPP3R1 RAB6A AP2B1 NAP1L2 RPL41 DNAJC6 RAB2A COX6A1 ATP5I GUCY1B3 GDA FGF12 PRKAR1B INA DYNLRB1 RAP1GAP2 FAM127A ADD2 CAMK2N2 UBE2V2 SLC8A2 CDK17 SEZ6L2 ARL6IP5 COX7C SNAP91 TRIM37 PTMA CTXN1 GAP43 B3GALT2 C14ORF2 RPS15 UQCRB AES PLCB1 MAST3 SCG2 C14ORF132 ETV1 ATP6V1B2 CLTC SLC22A17 PCDH17 SYT4 BNIP3 BRINP3 CPE PEBP1 NGFRAP1 RAPGEF5 NNAT TMEM130 TUBA1A ARF5 FTL BEX2 HMGCR KCNK1 COX4I1 SYTL2 RAB3B PCDHA10 VDAC1 ITM2C RPS28 MT-ND5 MSMO1 CDK14 NAP1L3 H2AFZ BEX1 REEP5 VDAC3 ATXN10 HSPA8 WASF1 OLA1 ANO3 KCNA2 PEA15 CLIP3 MORF4L2 CKB KLF10 CPLX2 SSTR2 ATP5B SEMA3A RNF11 CABP1 TGOLN2 C6ORF1 STX1B NXPH4 RPS3A EFHD2 SLC9A1 HMP19 RAP2A RAB11A ACOT7 RPL37A CTNND2 MAPRE2 MT3 STMN3 ALDOC KIF21A TPPP MYL6 NEFH FILIP1 PET100 SYNGR3 WARS ATP9A LMO4 SCN2B TCEAL2 SERPINE2 DYNLL2 CLSTN2 ADSS OPCML TSC22D1 CCDC85B CTBP1 VDAC2 NUDT4 MFSD6 SCD5 SYNPO C7ORF50 TUBB4A IDH3A TERF2IP DYNLT3 GUK1 DDAH1 EDNRA CHL1 PDE1A PTK2B ATP6V1G1 PCSK1 RASGRP1 MAL2 NREP SOD1 HPCA FKBP1A PFKP GNG3 NARS LYNX1 MAPK8IP2 FBXW11 TBC1D15 NSF RP11-20I23.1 ATP6V0C ARFGAP2 MRFAP1 RPL38 KRT17 SNN BSN BCL11B TMEM14A ELMO1 NIPA1 MAP2K4 SRP14 PFN1 MAP7D1 BAD SNRPN LAGE3 GRM3 NEFL OLFM1 NEUROD6 TSKU KLC2 IGSF21 BRK1 GABARAP ARL8B RPS10 DCTN1 SYNPR HNRNPH2 ATP1B2 CDS1 ARF1 EPB41L3 TCEB1 RP11-111M22.2 FASN RHEB RLIM ARL4D HPRT1 ISG15 NRN1 FIBP FAM174A CNP GPX4 IQSEC1 CYP26A1 HIGD1A GSKIP NAT8L GSK3A C20ORF24 REPS2 RBM20 IGFBP2 KLHL12 SPARC MGST3 SPRN ADORA1 TUBA4A NBL1 SLC39A10 SEZ6 PPP1CB ARPC4 CORO2B PTGES3 BHLHE40 PVRL1 TBCA CEND1 PPP2CA TBCB CACNG3 STX1A NDUFA1 CPLX3 AURKAIP1 GNB1 SUB1 FAM43B SNX17 FAM19A2 PFN2 MFN2 NRSN2 EPS15 VSTM2L UBE2D2 PHYHIPL NCALD DLC1 WASL KIF3C RPH3A TAGLN3 MBP NDRG3 CSDE1 ZBTB18 DACH1 ASAP2 DNAJB6 SPOCK1 SYT5 HOMER1 CACNB1 SLC7A1 CISD1 CFL1 ATP6V0D1 SLIT1 WBP2 LAMTOR5 ENSA BSG MAGED1 SH3BGRL3 NDUFB2 CREG2 ARHGAP35 C16ORF13 NECAB1 TENM1 ATP6AP1 PEG10 ELAVL2 MYEOV2 DNAJA1 ERH SNCA NAP1L5 CAPNS1 COPRS PTPRN2 KCNC2 ARSJ PPP2R2B BEX4 TMOD2 SRP9 CDK5R2 EID1 RASGRF1 GPR158 HK1 BTBD10 MLLT11 RAB1A SAP18 NUDT21 CHMP4B CCDC184 TMEM158 CLIP2 GABRA5 RPL35 EPDR1 LMBR1 ANXA7 CAB39 BSCL2 SLC7A8 RPL8 ARL2BP RAN ISCU UBE2E3 UBC PHYHIP PIP5K1B KIF5A CNTNAP5 KAL1 PCBP1 ADCYAP1 FKBP4 UTRN BIRC5 OR6D1P PCDHA4 AC244489.1 NGRN CFH TUBD1 CRISPLD2 OXCT1 PNKD CTSD ATP6V1E1 PIN1 SPRYD3 HSPB8 ANAPC11 NDUFB1 PTPRS CDC42SE2 NCOA4 SMYD2 ATP5F1 BMP2 USMG5 GLRA3 PSMA7 GSTA1 STK39 TMEM141 FAM134A ABCC12 TOMM7 CXXC4 GJD2 TUBB4B DDR2 DMTN GRINA MORF4L1 MZT1 TEX2 SEPT4 PITPNA ACTR1A RP11-195F19.5 DSTN STK24 UQCRH CPNE8 MAP2K1 BAALC PTPRN MTX3 RAB4A TPRG1L COX7B CYC1 KCNMB4 ANXA1 C19ORF70 GPCPD1 RASL11B DHCR24 SFTPD TCEAL3 LINGO1 ABHD8 FAM229A PSMB5 TKT LSM4 NDUFA8 SYT13 SLC25A4 CHCHD2 NRAS UQCR11 PSMD12 CRIM1 APBB1 KRT17P6 COPG1 LMO1 YAF2 PINK1 SERPINF1 IMMP1L ATRN MAOB RPS12 NDUFB7 RHOB CRTAC1 BLOC1S1 ARC TRAC MDH1 POSTN DYNC1I1 TRIB2 TXN MEDAG RPS19BP1 EPHB6 ITGB5 POMP RPL17-C18ORF32 TESPA1 KLHDC3 FAM198B DUSP1 TMEM65 CCDC124 C12ORF49 DNAJB9 KCNH5 RANBP1 TMEM117 LAMTOR1 MZT2B COX8A PGRMC1 UQCRC1 RAD23B UQCRC2 C19ORF53 ITPR2 FAM163B PDZRN4 NDUFB8 PCDH8 HDHD1 SNRPE RPL15 CRYAB CCNO UQCRQ DPP6 PGK1 UBQLN2 RASGRF2 STUB1 NDUFA13 PRPH2 GYG1 MAPRE3 PIK3R1 GRIK1 PPP2R4 FKBP8 AZIN1 KRAS NR4A1 AKAP12 HINT1 SPCS2 TMX4 CA11 PRUNE2 ALDOA COL24A1 KCNAB2 UBA1 C9ORF16 HBA1 EIF4G2 ZMAT2 CERS6 RXFP1 DNM3 VAT1L MAP1A STRAP SLC25A6 CDH24 NDUFV1 INPP5F CALN1 JAKMIP1 SRM GLO1 WBP11 SNCB RRM2B KCNF1 AP1S1 PROKR2 RPL17 SH3BGRL2 PHB NEFM CCND1 ASPDH SULT4A1 DUSP2 ANAPC13 MAP7D2 MDGA1 TPGS2 RPL36A SNAPC5 PMEPA1 ARF3 HBQ1 PRDX2 ZCCHC17 SGK223 RPL23A RPL7 PCSK5 RBX1 GRAMD3 NDUFS5 BCAP31 RPS2 NDUFAF2 CCDC25 FEZF2 DUSP6 MAP1LC3A MPC2 MRPL51 ZNF365 POLR2J EGR3 TENM3 SUCLA2 RAB40B HSPBP1 DOCK10 HES7 UBE2N FAM96B PCSK1N YWHAQ NCBP2-AS2 TM2D3 ELAVL4 RABAC1 DDN HS3ST4 DPP4 GHITM PPP1R9B TMEM35 EIF5A2 PRDX3 STMN4 SLC38A1 SLITRK1 TRABD2A COX5B MAGEH1 PPM1A ATPAF1 C1ORF52 BEX5 LRRC39 ROBO2 KLHL5 ATP5J ATP6V1G2 RAB3IP COX7A1 PSMD8 SH3GL2 TUSC2 SMAP2 KCNV1 SEMA3D RPL31 TRAPPC1 RPL13A PTPRM ATP5G3 PSMC1 OLFML2B GRIK3 PEX5L CDKN2AIPNL SCOC ARHGDIG STMND1 CAMK4 MTND1P23 OPRM1 ABHD14A RFK PCDHB2 CPNE2 MRPS21 BAI2 MARCKSL1 ACTR6 PSMC5 HTR2A ANKRD18A DRAP1 GREM2 SEMA3C COPS7A COX7A2L PTCHD4 RAB3C RPL3 SMIM13 CMPK1 ATP5A1 ATP6V1C1 VAPB NDN SNX3 VWC2L RIT2 OST4 TCEB2 NXPH3 C1QBP ATP5C1 RHOA CABYR COX6C GBE1 SKP1 TMA7 CMAS PITHD1 ACLY PEF1 TOMM34 ARL8A HS6ST3 SNX10 RAB5C TLN2 HSPE1 TNNT2 VPS35 HRH3 KITLG CFL2 ATP6V1F JUNB SLC7A5 LDOC1L GABRG1 ANXA6 RAB7A UHMK1 SKAP2 PECAM1 WSB2 HES1 RPL6 SERF2 RPL21 RP11-219A15.1 MIF PCDHGA6 PCDHGA5 PCDHGA10 TUBB3\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "cortical layer 5-6 excitatory neuron" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MT-ND4 MT-CO1 MT-CO3 SNAP25 MT-CO2 GPM6A SYT1 PRKCB CHN1 TSPAN7 PJA2 PEX5L DPYSL2 SPARCL1 CAP2 MT-ND3 DPP6 CALM2 CPE RTN3 ZNF385D SYTL2 MT-ATP6 GMFB GNAQ LDB2 SLC39A10 CALM3 MT-ND1 MTRNR2L12 NAP1L2 SEPW1 CALM1 MT-ND2 MTRNR2L1 NDFIP2 ARPP19 CNTN1 DNAJB6 NPTX1 ATP1B1 TF PREPL IPCEF1 EIF1 ATP6V1A PSD3 TMEM59L OLFM1 YWHAZ TMSB4X ROBO2 DMTN GDI1 SERINC1 PRNP PDCD5 BASP1 SARAF SLC24A2 TRMT112 ATP1A1 EPB41L3 SCOC NPTN SLC12A5 SCAMP5 PSAP MORF4L2 AP3S1 SLC17A7 TMEM130 SCN3B NELL2 EIF4A2 RPL39 PIK3R1 COX4I1 NAPB MT-ND5 EFHD2 ACP1 RPL15 COX7A2L RTN4 MAPK1 COL24A1 THY1 GRIN1 CAPZA2 ITM2B PPP1R9B STMN4 MYL6B SYNGR1 LMO3 PDP1 PRKCE PRKACB BEX1 PPP3CA MTRNR2L6 NR1I3 DIRAS2 PRPS1 MAST3 KCNK1 IQSEC1 ATP6V0E2 MGST3 CX3CL1 YWHAH RPL10A SLC1A2 ID2 GRIP2 RPL37A ARPC4 NUAK1 FIS1 CLU IFI6 ARL4C ARF5 PRDX3 PDE3A ALDOC FAIM2 FAM3C MEGF11 CADPS2 CMPK1 AES NECAB1 CLIP2 GAP43 SOD1 C12ORF57 FASN PELI3 NCALD KIAA1045 RPH3A C12ORF49 VDAC3 NAP1L3 PRKAR1A MORF4L1 ACTB PCSK1N PPP2R1A ADAM23 DYNC1I1 FKBP1A GRIK3 ZFAND5 NPTX2 RGS4 EFR3A TPGS2 CCDC124 CEND1 PPP2R4 KCNAB2 PSMC1 UCHL1 RPS12 YWHAB HTR2A PKM RPL38 CSDE1 MT-CYB EID1 MDH1 POLR2L BCL11B OR6D1P PPP3R1 GSKIP CAB39 RP11-111M22.2 NCDN DNAJA1 ACTG1 ITFG1 NRGN KCNH5 TENM3 CERS6 OPCML SCD5 CLSTN2 CAMKK2 IGSF21 PDE1A SPTBN1 YWHAQ SYNGR3 MRFAP1 CDK17 DYNLRB1 HS3ST2 PRKAR1B NDRG4 TMEM155 TUBA1B MFN2 GNB1 ETFB CA11 RAB2A DKK3 NGFRAP1 NEGR1 MTRNR2L8 FEZF2 PHYHIP SMS GDA FBXL16 SERINC3 COX6B1 COL5A2 SUB1 MMP24-AS1 RPL18A BIRC3 TPPP SNCB CTNND2 MBOAT7 HSP90AB1 ANXA6 FLOT2 SULT4A1 HINT1 CPLX2 VSTM2L TKT ENC1 ATP2B2 AP2S1 AP2M1 ALDH5A1 NDFIP1 VSNL1 MPC2 SYN1 HSP90AA1 PTK2B VDAC1 PFN2 PAFAH1B2 TGOLN2 TSPYL1 RPL36A CADM2 PEF1 ATP6V1G1 CHMP4B CLSTN1 MYL6 SSBP3 STXBP2 SYT11 CTNNB1 B3GNT1 WASF1 DYNLL1 TMSB10 RPS15 NUDT21 GDE1 PLCB1 SAP18 NMNAT2 MARCKS JUND RAB5C TMA7 RTN1 RRAGA BAALC APP PHYHIPL TMEM230 RPS6 ENO1 RPS28 FBXO2 RPRM NAPA MAP1LC3B PGRMC1 ATP6V0B PSMD12 HNRNPA1P40 EPHB6 NSF IDS C11ORF31 PTCHD4 NGRN ALDOA ATP6V1G2 MIF RPL13A RAB3B PCDHA10 PCDHA9 PCDHAC1 PCDHA4\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "cortical layer 5-6 excitatory neuron" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: RAB3B RP11-111M22.2 SNAP25 SYT1 TBC1D15 FTH1 DPYSL2 TMSB4X PRKCB SYTL2 BIRC5 SKP1 RTN1 CLU CALM1 PTPRN ATP1B1 STMN1 SPARCL1 SCN3B ATP6V0E2 GPM6A RTN4 MT-ND2 CALM3 ENC1 CALM2 CHN1 TMSB10 OR6D1P NR1I3 TUBD1 ATP1A3 FAIM2 CADM2 BEX2 CCK OLFM1 MT-CO1 CLTC OAZ1 CDC37 USMG5 CKB PRNP MAP1B SULT4A1 KIF21A SYT4 DCLK1 MGST3 UQCRB PPIA PREPL ATP5I SOD1 PGAM1 RPS15 KLC1 RPL35 TSC22D1 RTN3 SPTBN1 PFDN1 COX7A1 NAPB DIRAS1 ATP5J TMOD2 HSP90AA1 GNG3 MTCH1 SNRPN NDFIP2 OPRM1 C1ORF52 CAMKK2 MT-CO3 PLD3 CRIP2 AP2M1 SLC6A17 CAMK4 OPCML LINGO1 GSK3A HSP90AB1 HSPE1 NPTX1 VSNL1 KIAA1045 RPL31 TAGLN3 LYNX1 TKT NGEF DPP6 SYT11 MT3 BAI2 ATP2B2 COX7C HK1 VAMP2 ARF1 SCN1B RGS4 MYEOV2 UBE2QL1 NDUFB8 RPL37A HTR2A ATP5G3 STXBP1 TUBA1A ACTB PEBP1 PGRMC1 SPOCK2 RNF11 PPP3CA CREG2 UQCR11 PRKACB BRK1 PGM2L1 ZNF385D IDS ATP6V0C RP11-20I23.1 ARFGAP2 EPHB6 TUBB4A RAB40B NDFIP1 TRPT1 COX4I1 MSMO1 ARHGDIG SPRYD3 RELL2 BSG PKM FXYD6 CA11 MAGED2 TCEAL5 ATP6V0B CPLX1 SH3BGRL3 SEPT4 TMEM59L NEUROD6 SUMO1 FAM127A YWHAZ SELT NAT8L PINK1 PRDX3 LRRC53 DHCR24 AURKAIP1 CMAS NDRG4 ATP5O ALDOC MYOM2 DCTN3 STMN4 PRUNE2 PSMA7 RPL38 CA10 SUMO2 ADD2 YAF2 RPS28 SPCS2 RFK PPP2R4 LMO4 H2AFZ TPPP GABRA1 STMN2 ATP10A EPB41L3 FKBP4 PANX1 SLC25A4 NGFRAP1 NCAM2 MORF4L2 RPL21 NEGR1 NFIA SLC39A10 ATP1A1 CCDC61 SLC25A6 RHBDD2 NECAB1 ZNF208 TPI1 RTN4R PPP1CB CHGB LGALS1 ANGPT2 BCKDK C9ORF16 EPDR1 RAB11FIP5 LANCL1 GDE1 UCHL1 NDUFB11 RHEB DPY19L1 MAST3 CISD1 TPGS2 COX17 AZIN1 CLSTN2 AHNAK2 NCDN UBA1 IPCEF1 CADM3 UQCR10 GMFB SLC30A3 TMEM132D GRIN2A BASP1 PPDPF SST CERS6 CDK5R1 INSIG1 PRKAR1B LMBRD2 DNAJC6 SLC25A11 PFN2 RPL15 TCEA2 MAP1LC3A GAP43 FTL PDE1A STX1A PSMC1 ID2 TCEB2 TMEM200C WDR47 CAP2 OAT SLC17A7 PDP1 ATP6V1B2 HPCA ZFAND5 RASGRF1 MAP2K1 WASF1 RAB3C ARPP19 ISCU TMX4 IQSEC1 LMO3 PSAP PSMC3 OPN3 RPL19P18 DGKG RPL13A PEX5L LINC01296 ATXN10 MAP2K4 GPCPD1 NRGN PIN1 AKAP12 AGGF1P3 VDAC1 CPLX2 PPP2R2C RP11-195F19.5 NDUFB3 ROBO2 TCEAL2 PHYHIP PTMA TMEM179B FKBP1B PPP3CB RPL39 MYL6 KIFAP3 NUAK1 ARL6IP1 PIK3R1 ENSA CAMK2G CDK5 TMEM120A ENG GHITM ARHGAP35 ETFB SLC35B1 DNM3 B3GALT2 BHLHE40 COL24A1 GDA ATP6AP1 GRIN1 UBE2N TOMM70A NPTX2 NDUFA13 CLPTM1 DCTN1 AK5 FSCN1 CAMK2D NIPA1 MKX CCDC184 TUSC2 PTGDS YWHAH PDCD5 ACOT7 ATP6AP2 RPL41 PSD3 BTNL9 CHL1 C16ORF13 JUND MT-ND4 CABP1 APLP1 YWHAB TENM3 SRP14 ETS2 VAPB FGF12 SYT13 BSN DKK3 ARL6IP5 LDB2 RASGRP1 TMEM130 CLSTN1 KCNA1 CDKN2D CBLN4 APP JAKMIP1 TMA7 NREP EIF4A2 UQCRQ ATP5E GABRA5 CTXN1 C12ORF49 SMAP2 OXR1 STK24 C11ORF31 MAP4 SV2B CAPZA2 NOP10 SEMA3A SSTR2 EIF4G2 SEPW1 NDUFA5 YJEFN3 MTPN SCN1A MFN2 VDAC3 DNAJC5 ATP6V1A FAM96B THY1 TOMM7 RAB6A ATP9A SNN UQCRC2 CNRIP1 GUCY1B3 STK39 ELAVL2 RAPGEF5 SH2D1B COX6C GDI1 TOMM20 SERINC1 RPS12 MT-CO2 EFR3A RGS12 DYNLRB1 REEP5 SCAMP5 RAB6B TUBB2A UROS GTF2H2C_2 RPL13 RNASEK-C17ORF49 ALDOA ARF5 BSCL2 RPL6 MIF RP11-219A15.1 RPS26 PCDHA10 PCDHA4 PCDHAC1 PCDHA9 CCDC69\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "cortical layer 5-6 excitatory neuron" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: SYTL2 SNAP25 MT-CO2 MT-ND4 RP11-111M22.2 CLU ENC1 SPTBN1 PRKCB BIRC5 MAP1B NPTX1 PIK3R1 MT-CO1 TBC1D15 CHN1 EIF4A2 SYT1 MT-CO3 INPP5F GAPDH CALM1 CALM2 SPARCL1 TOMM20 MT-ND1 BEX1 MT-CYB CALM3 RP11-219A15.1 TF RTN1 DKK3 NECAB1 GPM6A MT-ND3 RPS15 NUAK1 NPTN NRGN ATP1B1 NDRG3 APP LMBRD2 MTRNR2L1 RTN4 PEBP1 NDRG4 YWHAH MT-ND2 SYT11 NRCAM MT-ATP6 SSBP3 KLC1 APLP2 AP1S1 FKBP1A RPL17 FBXL16 OXCT1 SARAF TMSB10 MAPRE2 ATP2A2 SERPINE2 VAMP2 OPA1 OPCML DYNLRB1 SPOCK2 GPR98 MAP4 SYN2 SRP14 NFIA CYFIP2 TSPAN7 AK5 ZBTB18 NEFL TUBB4A CREG2 PAK1 CHCHD2 SLC17A7 PDE1A SLC35B1 DCLK1 ATP6V1B2 COL6A1 DPYSL2 SUMO2 ENO2 SLC38A11 PRKCE FTH1 PFKP RAB6A MORF4L2 STMN4 GNG2 SNAP91 CDC37 CNTNAP3 MTCH1 TMSB4X ATP1A1 UQCRH SERINC1 PSD3 MORF4L1 RAB3B OR6D1P TUBD1 PGK1 MARCKS RPL3 C14ORF2 RABAC1 MTRNR2L6 ATP6AP1 CPLX2 EIF1 COX6B1 CDK14 HINT1 SLC24A2 GDA SLC7A1 KCNK1 ZMAT2 MAGED1 CDK5R1 FNDC4 ADAM23 ANKRD20A11P COX6A1 HK1 SCN1B CHMP5 NDUFB8 PRKCG SULT4A1 KCNMB4 PNMAL2 PKM HSPA8 AES SV2B MMD PGM2L1 GUCY1A3 NDUFS5 CAMK2G HOPX USMG5 NDUFA12 GOT2 MTRNR2L12 ACTG1 DCTN1 PARP14 SLC38A1 GPR68 TUBA1A FABP5 PSMC5 GRM3 OCIAD1 YBX3 PPP3CA OPRM1 EHD3 REPS2 NKIRAS1 CHL1 FGF12 EIF4G2 NAPB EPHA6 GNB1 PTPRN SYNGR1 PCDHGA5 TMTC1 ATP1A3 AP3S1 CPE SLCO4A1 UQCR11 ATP5I NPTXR YWHAG PRKACB CADPS2 KIF3C RNA5-8SP6 BTBD10 COX7A2 MTX3 APBB1 NGFRAP1 MT-ND4L QKI PHPT1 GAP43 MT-ND5 RAP1GDS1 DNAJA1 RELN PPP1CB CCDC74A PEA15 HSPE1 RAPGEF5 PPARGC1A IDS UBA52 CABP1 CNTN1 PJA2 SSTR2 TSPYL1 EPB41L3 STXBP1 RSPO3 TLE4 CFL1 SPOCK1 CDK17 CIAPIN1 MLF2 RPL13A TAGLN3 C1ORF52 EGFL7 C1ORF115 LL0XNC01-16G2.1 KCNA1 PDP1 VPS35 SCN1A MAL2 DDAH1 SHARPIN YWHAZ TIMP1 HOMER1 SNCA ELAVL2 DPP6 RPS3A RHBDD2 OLFM1 THY1 SYT5 LPAR2 STMN1 RAB31 RGS12 ZNF208 SEPP1 ARPC5L NAPA DNAJB6 ELAVL4 MAPK8IP2 ATP2B2 PTN BAG4 SYN1 INA IGSF21 LRP1B MDH2 PRNP ID2 SCOC LAMTOR5 GPR37 LIMK1 PPP2R1A NDUFA8 TRPV2 TUBA1B C1ORF233 NAT8L RPS28 DUSP2 CCK SKP1 RPL31 NELL2 ATP5J2 HNRNPH2 CX3CL1 PTK2B PTGES3 RPS2 PLCB1 SNX17 ALDOC TMEM155 ISCA1 PPIA UQCRB CEND1 STMN2 TCEB1 DMTN GRIN2A KLHDC3 DAB2 TLN2 ITM2B AP2M1 MFN2 KIF1A RNF11 ETS2 CLTB WBP2 COX7C ZBTB20 NAP1L3 DIRAS2 BAI2 TMOD2 CTC-575D19.1 RPL41 ALDOA LDHB RPS26 AC244489.1 CAPZA2 TUBB CFH\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "cortical layer 5-6 excitatory neuron" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MT-CO1 MT-CO3 MT-CO2 CHN1 MTRNR2L1 MT-ND2 MT-ND3 CALM1 SNAP25 ATP9A PRKCB TMX4 MT-ND4 GRIN1 SPARCL1 MORF4L1 RTN3 MT-ND1 NFIA NAT8L PRNP SERINC1 ELAVL4 ELMO1 SYNJ1 SARAF NIPA1 MMD COX7B CAP2 LMO4 PLCB1 STMN4 PPP3CA HSP90AA1 AP2M1 CACNG3 OST4 ABHD8 RAP1GAP2 MAP1B NDRG3 CAMK2D SLC24A2 ANO3 SPRYD3 SYT4 KCNF1 HRH3 CHMP5 MTRNR2L12 ARF3 ENC1 MT-ATP6 DPYSL2 ENO2 NDUFB1 SNX3 RASL11B RNF212 RPL8 KCNH5 RP11-111M22.2 ATP2B2 USP5 FASN PCDHA4 NRCAM MBP PTK2B CPNE8 HNRNPA1P40 VDAC1 MGST3 CLU RAPGEF5 ITFG1 RPS5 CERS6 NAP1L3 KRAS ACTG1 DNAJC6 LMBRD2 NECAB1 BIRC5 SV2B CALM2 TSPYL1 SLC8A2 BEX2 FTL AES MTRNR2L6 NDUFB7 ATP1A1 FILIP1L CRKL GALNT12 STMN2 GRIN2A ALCAM MAP7D2 HMGCR RBM20 DCLK1 LMO3 MT-ND5 TBC1D15 RAB3B VSNL1 CFH\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "cortical layer 5-6 excitatory neuron" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: SNAP25 STXBP1 MT-CO3 NR1I3 OR6D1P NDRG4 MT-CO1 NPTX1 ATP2B2 SYT13 ZNF385D MAPK1 ACTB MT-CO2 RAP2A AC244489.1 CABP1 GPM6A SYT1 PIK3R1 CHN1 YWHAG VAMP2 CD63 MMD STX1A NELL1 RTN3 YWHAB GHITM LMO4 HSP90AA1 BASP1 BRICD5 PCDHA4 ANKRD18A MAST3 EPB41L3 SULT4A1 ARMC3 NRGN SLC7A8 PIN1 LINC01296 SLC1A2 CKB C11ORF31 OAZ1 CCK RP11-111M22.2 RPL37A RPS15 COX4I1 PJA2 TSHZ2 RPL31 PPP3CA SLC6A17 RAB3B HNRNPA1P40 CFH ARFGAP2 QKI NDUFS6 FTH1 NRCAM ENO2 PPP2R2B PEX5L GRIN1 KIF5A PVRL1 BEX2 NDFIP1 PRKACB COL24A1 RNF11 SLC24A2 WASF1 COL25A1 RPS28 SPOCK2 LDB2 ACAT2 ELAVL4 PRUNE2 BEX1 CAMK2N2 NPTXR LRRC39 ISCA1 MTATP6P1 ATP6V1B2 BLOC1S1 MLF2 DGAT2 ACOT7 CACNB1 ETS2 MARCKS NECAB1 TUBB4B HCN1 RGS4 TNNT2 PEA15 TUBA1B ZNF319 MAP1B PGAM1 TGOLN2 RELN PRKCB EPDR1 LAGE3 SPARCL1 CERS6 CALM1 PRKAR1B KLHDC3 PRNP RAB3C FAIM2 CD9 CYCS NUDT4 MCMDC2 NFIA H2AFZ STAG3 SERP2 FAM84A TPI1 CA11 RP11-195F19.5 PGRMC1 ENG KRT17 MYEOV2 ACTG1 DCLK1 C16ORF93 SLC39A10 CISD1 SLC25A53 SIRPA TCEA2 NBL1 LPPR4 RPL12 KCNMB4 GLDN HSPA4 MAL2 TESPA1 PFN2 ARF1 OXR1 TAGLN3 SYT5 KLC1 STMN1 SCN3B NELL2 TOMM20 RP11-697E2.12 LGI3 ATP5G3 CHIT1 RTN1 RTN4 SCOC RPL35 AP3S1 TUBD1 SSBP3 GABARAPL1 TOX2 NDUFA5 KIF1A THY1 SRD5A1 GAPDH SERINC1 EIF4A2 CACNA1H RPL10A PTMA SCAMP5 MAP1LC3A RAP1GAP2 COX5B SUMO3 SNCA RESP18 COL5A3 STMN3 BCKDK CADPS2 HINT1 KCNA5 CADM2 IDH3A SLC9A6 SEZ6L OTOA FLOT2 HMP19 EFHD2 HDLBP TUBB2A TMEM155 SLC22A17 MT-ATP6 CSDE1 GSTT1 CYP27A1 SELT CDH7 JUN TMEM150C TLE4 CPLX2 WSB2 KRT17P6 TMEM130 MT-CYB SKP1 CTNNA2 UQCRC1 MYRIP LMO3 HSP90AB1 NGEF UCHL1 PET100 PGM2L1 RPL41 RP11-20I23.1 ATP6V0C ARF5 ATP6V1G2 BIRC5 GTF2H2C_2\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "cortical layer 5-6 excitatory neuron" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: SYT1 RAB3B CALM2 MT-CO1 SNAP25 BIRC5 NR1I3 RTN1 DPYSL2 RP11-111M22.2 SLC39A10 CCK MT-ND4 ENC1 PRKCB ZNF385D SEPW1 FTH1 TMSB4X TUBD1 VAMP2 STXBP1 ARL6IP1 DCLK1 CREG2 THY1 HNRNPA1P40 PKM CALM1 NECAB1 BEX2 LANCL1 IPCEF1 MTRNR2L1 ISCU CHN1 PPIA CDK14 RTN3 SYNGR1 ARPP19 DYNLL1 SNCA REPS2 SCN4B BSG BASP1 STX1A TSHZ2 EIF1 FKBP1A YWHAH RPL13A ATP1A3 MT-CO3 FAM163B NDUFA13 CALM3 RPL32 GABARAPL1 MT-CO2 NUAK1 ATP6V0E2 SERF2 RGS4 GPM6A NAPB SCN1A MAP1B SPOCK2 TOMM20 RPL31 S100A6 SPARCL1 OR6D1P TUBA1B VSNL1 BSN CEND1 RPS26 RPS10 UQCRH CABP1 LINC01296 CDK5R1 HSP90AA1 HSP90AB1 KLHDC3 CNR1 MT-CYB ATP5G3 NGRN CA11 PLS3 PET100 PEA15 NDUFB2 ANKRD26P3 PTPRS DMTN MYEOV2 PGAM1 SERPINI1 EPS15 FXYD7 RXFP1 UBB CD63 PEBP1 NGFRAP1 KLC1 YWHAG RPL7 LMO4 DPY19L1 KLHL5 BDNF POLR2L PPP1R7 DIRAS2 ETS2 GAP43 PIK3R1 MT-ND2 CYCS NDUFA4 UCHL1 PTMA ITM2B CNRIP1 ATP6V0B ELAVL2 COX4I1 GABARAPL2 KRT17P6 UQCR11 TMSB10 OAZ1 FAIM2 YWHAB TSC22D1 UBC CTNNA2 RPL17-C18ORF32 ATG101 FXYD6 NREP RABAC1 TMEM14A DHCR24 ARL6IP5 UQCRQ PPP2R2B SCAMP5 STMN1 DNM3 PRKACB HOMER1 OXCT1 PLCB1 NRCAM PDZRN4 SCN3B LMO3 PEX5L KIF5A ENO1 GUCY1B3 RPS15 OCIAD1 NEFL RTN4 GHITM YAF2 SLC17A7 NPTXR PDP1 CLU NRGN UHMK1 RPL41 APLP2 SARAF PNMA1 BAI2 NFIA RAB3A UROD CFH PCDHA4 EIF1AX NFE2L1 TUBA4A PEX11G GRIN2A POLR2M SSTR2 KMO BAG4 ESYT1 PHYHIPL WASF1 CSDE1 IDI1 PRUNE2 COX8A AP3S1 KCNH5 RP11-133L19.3 ADD2 COX7A1 SKP1 LAMTOR5 PLD3 SEC61G RP11-20I23.1 CLTC ATP5O CLEC2L KCNA2 TMX4 COMMD6 ATP5G2 CKB RBX1 SNAP91 COX6C CCDC115 ELMO1 CTNND2 MORF4L1 GUK1 MCMDC2 PAFAH1B2 NDUFA1 ARL2BP NWD2 PTPRT FRMPD2 UQCRC1 KCNC3 NDUFB7 NPTX2 CDCA8 RPS27A NDUFC1 ARHGDIG RPL15 PITPNA NDUFA5 NHP2 NAA38 FASN PI4KA KIF1A B3GALT2 SLC7A5 ACOT7 FIS1 LL0XNC01-16G2.1 FAM127A PPM1A MAP2K2 ZCCHC17 APLP1 MTRNR2L6 CD59 STMN2 RAB3C PRNP STMN3 PSD3 MTRNR2L8 DUSP6 SNRPN FNDC4 RPS28 TMEM59L ATP5J2 MORF4L2 UBA52 ACTB MKX TUBB4A HAPLN4 C16ORF93 LYNX1 ATP6AP2 UBL5 TSPYL4 RLIM SLC24A2 FAM131B BCAT1 NDUFB8 MYL6 CNTN6 C12ORF57 RPL6 PSAP CAP2 EPB41L3 BLOC1S1 C1ORF115 TGOLN2 MPC2 DIRAS1 OLFM1 TM2D3 NMNAT2 PAM SELT MAP2K4 PRKAR1A CPLX1 MAPRE2 ATP1A1 PSMC3 FAM198B PTPRN KIF3C SYT13 PSMC5 NDRG4 SCG2 SCN1B EXTL2 DUSP4 ENO2 EGR1 JUND NAP1L2 TM6SF1 DNAJB9 OPRK1 MIR6723 RPL39 SLC38A1 FKBP8 DKK3 COX14 PREPL FBXL15 RHEB RASGRF1 PACSIN1 EIF1B TUBB2A GRM3 EFHD2 TMEM141 ATP6V1C1 ATPAF1 ANXA4 AHNAK2 PPP3CB MLF2 HMGCR QDPR C1ORF52 NBL1 TEX40 RPL3 PFDN4 AES DNER IDS TSPYL1 GABRA5 DYNLL2 TSPAN33 TPT1 MED10 ARL8A MRAS ATP6V1B2 PPP2CB MAPRE3 UQCRB MT-ATP6 OXR1 COL5A2 CAB39 THOC7 ENSA ARHGAP35 VCAN DGKG SUMO2 HTR1F SERPINE2 EIF4A2 HNRNPH2 ATP6V1G2 SYT6 VDAC2 CADM2 KIF21A TXN FAM219A SYN1 PPP2R2C NPTN GPCPD1 RAB5C GPX4 PHYHIP NDUFV1 GOT1 COPE TPRG1L UQCRFS1 EFR3A NHP2L1 CFL1 PFN2 SV2B MTRNR2L12 NDFIP2 SNCG ATP6V0C MT2A COL10A1 CYFIP2 NAPA TCEB2 CAPNS1 KCNMB4 SAP18 ARC MYRIP ALDOA CYP26B1 RHBDD2 HSPE1 ISOC1 C14ORF2 VIP HSPA8 SLC12A5 AC244489.1 OPCML ATP6V1A CRH C19ORF70 CBLN4 PRKAR1B HMGCS1 SEZ6L2 AK5 NRN1 PSMD8 DDAH1 FBXO2 GMFB FTL DAB2 UQCRC2 MAP7D2 CISD1 TUBA1A LAP3 GABRA1 NRSN2 MLLT11 TOMM7 ATP6V1E1 CFL2 C9ORF16 CHMP4B SPCS2 PPDPF NME1 RASL11B SNRNP25 PGM2L1 BCL6 MTG1 DGUOK NSF RPL35 SLC30A3 HTR2A MTCH1 RPS4X EGR3 YWHAZ NAT8L RPL21 NUDT4 CERS6 C3ORF80 RANBP1 NPTX1 CLSTN2 ADAM23 SEPT4 SLC9A6 SNCAIP SH3BGRL3 NGEF CDC42SE2 TLE4 FAM149B1 PNKD TCEB1 VDAC1 STX1B LRP1B PJA2 NDFIP1 SSBP3 SPDL1 BNIP3 COX6B1 ATP1B1 APP TSPYL5 USMG5 VPS35 OAT TMEM130 PSMB3\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "cortical layer 5-6 excitatory neuron" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: RAB3B RPL41 RPL31 RP11-111M22.2 SNAP25 RPL38 RPL35 CHN1 RPS27A RPL37A RPL13A RPL32 RPL26 SYTL2 RPS6 RPS15 RTN3 OR6D1P PPP3CA RPL3 GAP43 ELAVL4 UQCRB COX7C ATP5G2 C9ORF16 UCHL1 RPS12 NR1I3 BIRC5 RPL10A RPL8 SYT1 RPL15 NAPB RPL11 FTH1 ZNF385D MLLT11 FGF12 MT-CO1 RTN4 RPL23A VSNL1 VAMP2 RPL21 FTL CALM2 TMA7 ETFB ENC1 PKM SEPW1 RPL7 PI4KA RTN1 CALM3 TOMM7 COX6C TUBD1 WSB2 RPL39 NDRG4 APLP2 GOT2 ATP5G3 LMBRD2 DMTN NDUFB2 ATP1A1 TPI1 CREG2 PJA2 ATP6V0E2 NGFRAP1 RPL36A SH3GL2 GAPDH SSTR2 STMN2 ATP2A2 SLC12A5 NECAB1 ELAVL2 TUBA4A BCL11B NUAK1 MAP1B SCN1A COX6B1 YWHAB GPM6A CLSTN1 MDH1 NEFM AES CABP1 TMSB10 QDPR MRPL20 ATP5O VEGFA RPS28 ITFG1 ATP6V1B2 TNNT2 CLTC MLF2 TUBA1A NDUFB8 CPLX2 C14ORF2 COL6A1 PPP1R7 TCEB2 THY1 MRPS7 MT-CO3 PIK3R1 BAI2 SCN4B VPS35 NDUFB1 CCK ITPR2 NRGN CLU GABARAPL1 SERINC1 SARAF PRKACB RPL13 ANO3 ISCU TPT1 RPL6 STMN4 CALM1 USMG5 STXBP1 COX6A1 IQSEC1 NME1 STMN1 EIF1 GRIN2A CAPZB MT-CO2 RPL18A RPS5 RPS4X PHYHIP CFH RPL17-C18ORF32 RPL17 CFL1 ANAPC11 HDDC2 COA4 NDUFB10 RPS10 NDUFA5 SYT2 PGAM1 GPR98 YWHAZ PSMC3 OPA1 PCSK1N ATP2B4 CNTNAP5 KRAS SAP18 STX1A MBP RGS4 PCDHGA5 GSTP1 GHITM GADD45GIP1 CA10 NRCAM COL5A2 ABHD14A HEY1 PFKP FER1L4 EIF1B ARF5 NKIRAS1 ATP5I PDE1A PODXL EIF4G2 AURKAIP1 RPL12 GSK3A CAP2 ATP2C2 CLDND1 GUK1 DSTN PPIA MT-ND5 PGK1 RAB2A SERF2 SNCG ALDOC CBX6 SLC7A1 CTNNA2 NPTX2 MAST3 RHBDD2 CX3CL1 PRKCE ASNA1 RAB40B GNG3 MAL2 ADAM23 LANCL1 ITM2B TUBA1B THOC7 NAA38 UBE2M SYT11 POLR2I CITED2 PAK1 NUDT4 LGI3 MMP24-AS1 DNAJB6 UBL5 RABAC1 CNTN1 NDUFB7 PSMC5 C16ORF13 WDR47 ATP11C DPP6 MAP2K1 MTRNR2L1 HSPA8 CAB39 NAP1L5 SRP14 SLC25A6 ARHGAP35 DBNDD1 CAMK2G SNCA DPYSL2 INPP5F FXYD7 BSN CHL1 GUCY1B3 UQCRH FAT3 PGM2L1 FABP5 ATP5A1 FAM84A PARM1 CKB ATP5J LRRC69 PTPRN2 NDUFA12 NDUFA4 WBP2 DYNC1I1 IDS HS6ST3 PTCHD4 MAP1LC3A PRDX5 NREP CHP1 EID1 RBX1 DYNLL2 PLD3 CTNNA3 PTK2B COX8A EIF4A2 AP2M1 ARF3 CCDC124 UQCR11 ISCA1 BEX5 NDUFA13 NCALD DHCR24 CMPK1 BAALC SLC24A2 OCIAD1 S100A6 SMAP2 C11ORF31 GMFB ZCCHC17 HSP90AB1 CDK5R1 MAP2K2 COL24A1 MT-ATP6 DDAH1 GSKIP OPCML TSC22D1 RAB3IP NHP2 SLIT3 C1ORF233 PCMT1 OAZ1 TMSB4X PRNP MORF4L1 NTHL1 PREPL NEGR1 TSPAN7 CYCS DYNLL1 PFN2 PIP4K2A CORO2B COX7A2 KLC1 EPB41L3 TXNDC17 OLFM1 NDUFA8 WBSCR17 ATP1A3 TCEA2 SKP1 NCOA4 DCC NAT8L UBA52 MAP1LC3B DIRAS1 SH3BGRL3 FBXO2 NDUFS6 GPR26 EDF1 TBCA NPTN CHGB SPTBN1 RPS3A GPR37 UQCR10 GABRA1 KCNK1 SGCD HSP90AA1 HMGCR ANGPT2 AK5 PEA15 MT-ND2 CAMK2D GRINA AZIN1 PRKCB YWHAQ SYT5 SEZ6L2 PVRL1 LAMTOR1 CHMP4B EGR1 MGST3 CACNB1 APP KIF25 NEFL SIRPA MT3 BSCL2 DPY30 MTRNR2L8 MRFAP1 PSD3 TENM3 PPP1CB YWHAH HK1 MRPL51 COQ10B PPARGC1A MTRNR2L12 GNB1 ABCC12 ATP6V1E1 LRRIQ1 EGFL7 KIF3C APLP1 CDC37 MAPRE3 MFSD6 TMEM200B EIF1AX RAB3A TESPA1 COX14 ALDOA RP11-219A15.1 RNASEK-C17ORF49 MTRNR2L6 NSF RP11-20I23.1 NGRN ATP6V0C GABARAP CDC42SE2 PCDHA4 PCDHAC1 PCDHA10 PCDHA9\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "cortical layer 5-6 excitatory neuron" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MT-ND2 SNAP25 SYT1 MT-ND4 MT-CO1 MT-ND1 SLC9A6 MT-ATP6 PREPL CHN1 RTN4 CLSTN2 UQCRB NFIA TUBA1B MT-CYB PET100 ATP5B MTRNR2L1 MT-CO2 PTMA PEBP1 RPL38 TMSB4X MT-ND5 NGFRAP1 MT-ND3 ARL6IP1 ATP1B1 ZNF385D DNAJC21 TBC1D15 RAB3B SYTL2 PSMB5 FABP6 CAPZA2 ATP2B2 DYNLL2 PKM COX7A1 SYNJ1 PSMA7 MTRNR2L6 VDAC3 CAMK2D SPHKAP COX6C BNIP3 TSPAN7 MPPED1 PEX5L SPARCL1 RAP2A SLC38A11 PKD2L1 PGM2L1 ATP6V1A DDAH1 KIF5A YWHAZ PCDHA9 GPM6A SARAF STMN1 CLEC2L MAPK1 TLE4 NRGN CHL1 CLDND1 RAB1A APBB1 GPX4 CERS6 PCP4 CDK5R2 DCLK1 SNCA MT-ND4L NXPH2 ENO2 SLC24A2 CDH7 C6ORF1 CPE LUZP2 USMG5 MT-CO3 PPP3CB PJA2 RP11-195F19.5 C19ORF43 PCSK1 PDZD11 TMEM59L MTRNR2L12 FOXP2 TBR1 OAT KLHL12 NDRG4 RTN3 CABP1 UCHL1 PNMAL1 ANKRD18A RPS2 GRIN2A NDUFB1 RPS28 AK5 RP11-111M22.2 GDI1 KCNH5 RAP1GAP2 RPL13A PPP3CA CADM2 HS3ST4 BCL11B CCDC85B DDR2 PDZRN4 SPTBN1 DYNC1I1 STX1A MPC2 PIK3R1 SERINC1 PDE1C SYT11 DKK3 CALM1 GSTT1 GABARAPL2 MAP1B ARFGAP2 SERF2 RP11-219A15.1\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "cortical layer 5-6 excitatory neuron" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MT-ND3 SYT1 NPTX1 BIRC5 MT-CO3 RAB3B SYTL2 MTRNR2L1 CAMK2G MTRNR2L12 CLU CHN1 CALM1 RP11-111M22.2 ATP1A1 SNAP25 MT-CO2 TOMM20 PRNP MT-CO1 IPCEF1 SPARCL1 NEFM NECAB1 NRIP3 KIF1A LMO4 MAP2K4 PRKCB ATP2B2 DNAJB6 TUBA1B RPS15 PEBP1 ATP1B1 ENC1 PPDPF STMN4 CPE TMX4 MT1X SLC22A17 SLC38A1 PSAP TMEM130 ARF1 APP SERINC1 ITM2B ADORA1 MT-ND1 GUCY1B3 PEG10 MTCH1 PJA2 NFIA PEX5L MAP1B SMOC1 EIF1 UQCRC1 PNMA2 PRDM8 GUK1 NDUFA13 LRP1B GDI1 C1ORF115 COL11A1 KLHDC3 ZNF365 CNTROB SYT4 PGK1 LIG1 CKB RPL31 WFS1 DPYSL2 BSG OXR1 RCAN2 OLFM1 CNTN1 CDK17 TUBD1 BASP1 NRGN VSNL1 ITM2C OAZ1 ELAVL4 UBB HCN1 ATP6V0B BTBD1 COX4I1 EPHB6 OR6D1P CLPTM1 MAPK1 GPR158 PRUNE2 HSP90AA1 CHGB LAMA4 SERINC3 VAMP2 SH3BGRL2 EPS15 SLIT1 WASL NGFRAP1 RPL10A PRKAR1B STK39 RAB6B MAPRE3 SDK2 DNAJA1 LYSMD2 RPL15 ANO3 DGUOK DCTN1 CLSTN1 PCBP1 CAPZA2 NCEH1 CHMP4B CTBP1 RBX1 CTNNB1 AP2S1 YJEFN3 TMEM59L NR1I3 DIRAS2 OPN3 SOX6 CMAS NDFIP1 PCP4 MTRNR2L8 CAB39 YWHAG CYP26A1 INA ARHGAP6 RTN1 CRYAB VPS35 MORN2 EIF4G2 MORF4L1 HMP19 PPIA TOMM7 CA11 KRAS SEMA5A ACTB GRM3 RTN4 FKBP8 PCDH15 ATP1A3 CTSD RPRM SYN1 UHMK1 SULT4A1 AES GDA GABRA1 NDUFS5 TESPA1 FXYD7 AP2M1 PKM RPL8 HFM1 CPNE8 MAP7D2 CDK5R1 APLP2 PVRL1 FARSA KIFAP3 DKK3 SLC24A2 SCN3B C1QBP ENOPH1 CYFIP2 GLUL COQ10B PDP1 GOT2 CCT5 HK1 HOMER1 GPM6A SCD5 EIF4A2 DYNLL1 DNAJC5 PI4KA COL24A1 GRIN2A MTRNR2L6 ALDOA SERF2 RPL13A MTND2P28 MT-ND2\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "cortical layer 5-6 excitatory neuron" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MT-CO3 SNAP25 SYT1 MT-ND4 MAP1B MT-CO1 MT-CO2 CALM1 GPM6A ENC1 TMSB4X CHN1 MT-ND2 SYTL2 ATP1B1 TMSB10 CALM2 DIRAS2 TSPAN7 RAB3B SPARCL1 LMO3 APP TUBA1B GAPDH FXYD6 MT-ND1 PPP3CA NRGN PRNP CNTN1 FTH1 MTRNR2L1 CADM2 STMN1 RTN3 YWHAG SLC1A2 RTN1 GDA HSP90AA1 SLC17A7 MT-CYB YWHAH NGFRAP1 PTMA RNF11 STMN2 ITM2B GAP43 SNAP91 VAMP2 HSP90AB1 C14ORF2 SV2B OAZ1 ACTG1 ZNF385D UCHL1 MTRNR2L12 PEBP1 TUBB2A CPE ARF3 COX5B NAPB ACTB TLE4 PRKCB SEZ6L2 NDFIP1 YWHAB SNCA CAMK2D DYNLL1 MT-ND3 ATP5I PGM2L1 CLU FTL FXYD7 PSAP SERPINI1 STXBP1 CFL1 IDS PRKACB CLSTN1 THY1 COX6B1 ENO2 PREPL ATP6V1A OXR1 EDIL3 RPL15 ATP2B2 SARAF SPOCK2 ATP1A3 PSD3 PJA2 RPL31 CALM3 FAIM2 LPPR4 RTN4 DCLK1 HMGCR PPIA SEPW1 AK5 SEMA3A ATP5E KLC1 GDI1 NDRG4 B3GALT2 SH3GL2 EIF4A2 UBE2QL1 GABARAP DKK3 SERINC1 VSNL1 RPS28 PGRMC1 NELL2 TSPYL1 SIRPA EIF1 RPS15 SOD1 ALDOA TBC1D15 RP11-111M22.2 RPL41 PIK3R1 HMP19 AP2M1 CKB FBXL16 KIF21A CTNND2 SYN2 CHL1 DPYSL2 RAB3A PLD3 SYNJ1 LRP1B TMEM130 SYNGR1 TMEM14A BASP1 OLFM1 PPP3CB ARL6IP1 MT-ATP6 TOMM20 YWHAZ TUBB4B SNRPN NR1I3 ELAVL4 SLC24A2 NDUFB5 ATP6V0B SKP1 ATP5G3 CABP1 PRKAR1A MYL12B ATP6V0E2 COX6C MTCH1 MRPS21 RPL39 SERF2 UQCR11 NNAT NCALD UBE2V2 NDUFA4 MAPK1 NPTX1 COX7C NAP1L5 RPL35 IGSF21 PRKCG LMBRD2 PHYHIP SLC22A17 PPP2R2B OCIAD1 MLLT11 ATP6V1E1 SCOC APLP1 ARL6IP5 RAB11A ARL8B RPS26 PDE1A ENSA TSC22D1 COX5A SRP14 NFIA SLC12A5 DDAH1 LIMK1 ELAVL2 GPX4 PCDHGA6 RP11-20I23.1 ATP6V0C MTRNR2L6 ARFGAP2 KIFAP3 MDH1 ADSS ATP2A2 RAB6B ERH COX7A2 TAGLN3 RGS4 BEX1 B3GNT1 NDUFA5 IDH3A RXFP1 TPI1 KIF3C RAB6A NPTN PCDHA4 RPL26 ADAM23 WASF1 KCNK1 JUND CHCHD2 NAP1L3 MARCKS SKAP2 RAB2A FAM127A GOT1 RABAC1 PRDX3 NAP1L2 RPL11 RAB7A NGEF TCEB1 NKIRAS1 SLC25A6 NUAK1 TENM1 MTPN PPP2CB CLTC PKM MLF2 KIF1A CAPZB ATP1A1 LDOC1 TMA7 MAP2K1 ARL8A CRYM CSDE1 ANAPC11 MORF4L1 ARPP19 KCNAB2 ATP5H NDUFS5 EIF1B MIF TXN MMP24-AS1 WSB2 ISCU SCAMP5 TMOD2 HINT1 ATP6AP2 AES RPS6 NDFIP2 RAPGEF5 BSN MAP1A PPDPF TUBB4A SYT11 TUBA4A UBE2D2 PI4KA CX3CL1 AP3S1 RPL3 NPTX2 SYN1 UBB SCD5 ARF1 TM2D3 NREP SERINC3 TPT1 PPP2R2C SH3BGRL3 KRT17 CMAS ATXN10 ACOT7 MORF4L2 UQCRB PCSK5 CYCS CLTA PTGES3 RPL21 PET100 DLC1 CERS6 JAKMIP1 GUK1 GNG2 KIAA1045 CTGF HIGD1A CLIP3 RPH3A SUMO3 EPDR1 C1ORF52 SULT4A1 TMEM158 IPCEF1 WARS NDUFC1 TRIM36 GNAQ TBCA STK24 MYEOV2 HS6ST3 CDC42SE2 CNRIP1 SYT5 PCSK1N LSM4 REEP5 SCG2 STMN3 GDE1 ITGA6 UQCRH NDUFB8 HPRT1 TBR1 MT-ND5 HMGCS1 DNM3 PCDH17 VDAC3 EIF4G2 TCEAL7 GRIN2A SLC38A1 MFSD6 ZFAND5 PRKAR1B FKBP8 ATP6V1C1 RPL7 C19ORF43 PLCB1 BAG4 PRKCE TMEM59L ATP6V1B2 UQCR10 TERF2IP CDK5R1 ATP5A1 ARL1 YWHAQ SNCB USMG5 ARHGAP35 C9ORF16 BSG BEX2 SMIM13 IQSEC1 PFDN4 CDH6 RCAN2 BAI2 ITM2C PFN2 TCEB2 TLN2 CACNG3 AKAP12 MTATP6P1 PSMD12 SNX3 NDUFA13 UTRN ATP6V1F HS3ST5 FGF12 HDLBP RASL11B VPS35 MAL2 WBP2 GHITM UBA52 NSF MAP1LC3A GABRA5 RPL13A BSCL2 TPD52 CAPZA2 CFH ABHD8 CTNNB1 NEGR1 SELT KLHDC3 GRIN1 TCEAL5 ACTR1A PPP2R1A CAPNS1 RAP1GAP2 UQCRC1 FAT3 GADD45GIP1 GABARAPL1 INSIG1 TMEM65 RFC4 TMX4 UBE2E3 APLP2 FAM163B NAA38 SPRYD3 PALD1 IGFBP5 SLC8A2 SLIT1 BIRC5 AP2B1 TUBB3 KCNMB4 ARHGDIG EIF1AX TRMT112 KCNF1 PGK1 PTK2B PTN PITHD1 FSCN1 ZNF880 NDUFB7 FARSA NEFL NRAS DYNLT3 C18ORF32 CAP2 PAQR9 SUCLA2 PINK1 KCNAB1 NDUFV1 WBSCR17 C12ORF57 MAP4 FASN PNMAL2 PLOD2 MPPED1 STRAP SPTBN1 RPL12 PRDX1 HSPE1 SDK2 CTSD SYT13 RAB1A NDUFC2 DNAJA1 FIBP GRPEL1 CDH13 LYSMD2 CAMK4 CCT5 H2AFZ SLC25A22 BAALC MRAS RAB3IP PNMAL1 RPS10 RAB4A ZDHHC12 CRKL CXXC4 MBOAT7 RPS27A SLC25A4 MAP2K4 SEZ6 FKBP1A ATP6V1G1 TSPYL5 MT3 TUBA1A NDUFB3 VWA5A BRINP3 TENM3 SUMO1 NDUFB4 DRAP1 PPP2CA CPLX1 ATP5B MTRNR2L8 MRPL37 NFE2L1 PRDX2 TPPP PSMD8 CBX6 COX6A1 RAD23B ABRACL ATP5J CHMP4B LDB2 ATP5J2 MAP1LC3B CADM3 TKT RPL37A RNASEK-C17ORF49 PNKD UBE2M TGOLN2 STMN4 TMEM151A PFKP EFR3A HS3ST4 PGAM1 DPY19L1 SEZ6L SSTR1 CLPTM1 ELMO1 TMEM258 CACNB1 NDUFA2 GRIK3 TOMM7 AP2S1 BCL11B RHBDD2 USP5 LAGE3 COMMD6 PCSK1 MRPL55 UBE2F CORO2B ATP5C1 FAM149B1 ATP6AP1 NDUFA12 OPA1 MRPL20 SNN CDCA3 MT2A HSPA8 AURKAIP1 FABP3 KLHL5 RAN UHMK1 MPC2 PPP2R4 GABARAPL2 MC4R SCN3B PRELID1 RPS3A GSK3A ATRN BRK1 SUB1 DNAJC5 NDUFA1 CAB39 PMEPA1 LDOC1L KCNA1 ENO1 GRINA NDUFA11 RAB5C NCOA4 BNIP3 YIPF3 TRABD2A CDK17 PDP1 COX14 NRN1 UBL5 CEND1 RAP2A NCEH1 IDI1 MRAP2 ANO3 DCTN1 APBB1 SEMA3C ISCA1 HCN1 ESCO2 TUBD1 OR6D1P OPRM1 CNTNAP3 STX1B FAM131C FLOT2 PLSCR1 SERP2 SSTR2 CTBP1 CPLX3 C1ORF115 SLC39A10 DNAJB6 ASPDH VEGFA NRSN2 HSPA4 WASL PSENEN NCDN FABP6 APOE VGF NOP10 CD63 RHOA CD59 RHOB LIN7B CNP MRPL51 PSMC5 RORB LZTS1 SERPINE2 PROX1 GMFB FKBP1B TMEM70 TP53I11 CDK5 ANXA6 ARHGDIA ADRA1D COX4I1 SYT6 FAM19A2 EDF1 GALNT12 ACTR10 PPAP2B RP11-175B9.2 PTPRM RASGRP1 DMTN ALDOC EFHD2 NDUFAF3 MBP C14ORF132 WBP11 RBX1 NDUFB11 TOMM22 AZIN1 CDK5R2 CYFIP2 TRIP6 ETFB YJEFN3 MYL6B VSTM2L SERPINF1 SQLE SLC9A6 VDAC1 NHP2 RNF208 MAPRE2 FBXO8 TALDO1 TMEM132D MAGED1 NTNG2 SPARC GPR158 RPS4X POLR2I MCHR2 PPM1A NPTXR EPS15 NCAM2 PIN1 C1ORF56 CRTAC1 PHYHIPL ASAP1 NEFM NDP CITED2 GRM3 RPS12 SLC7A1 NDUFAF2 PRDX5 ADD2 MT-ND4L DHCR24 SDCBP BEND5 CPLX2 LINC00116 GABRG1 PELI3 CNTNAP5 SNRPE KCNK2 MGST3 MSMO1 DCTN3 HLA-B TXNDC17 PTPRN PAFAH1B2 C11ORF31 ABCC12 CAMK2G DUSP6 APLF KL S100B GTF3A RBM20 RP11-403P13.1 CPNE2 RPL23A COL24A1 ENOPH1 UQCRFS1 NEUROD2 MED31 NBL1 BTBD1 KIAA1755 NDUFB1 CDC37 PTGS2 SLC15A5 STX1A PEA15 MAOB EHD3 GOT2 RSPO3 CTU2 C6ORF1 DNAJC6 FAM219A BLOC1S1 VSTM2A PELI2 PSMD2 NAT8L LGALS1 GSTT1 LINGO1 NAPA AC073264.6 SPHKAP PTPRT PSMC3 POLR3H CTXN1 ACP1 CHI3L1 DGUOK CALN1 KLHL13 ALDH5A1 RPL13 COL11A1 C7ORF50 C1ORF233 TACR3 RPL32 HOMER1 NUDT21 SSBP3 DBNDD1 PITPNA FAM131B POMP SPRN TUBB PIK3C2G PLCB2 AIMP2 LDHB GPR98 MDH2 OPN3 RASGRF1 CLSTN2 COPS8 PTPRN2 MED10 GPCPD1 ADAMTSL1 CCDC184 HPCA RPL18A TMEM150C PTPRS CETN2 COX7B GABRA1 WDR47 ATP2B4 RPL26L1 NDUFB10 HN1 ITFG1 LHFP MAPRE3 CHMP5 ATP5G2 DNER OST4 POLR2L SMAP2 NME1 NGRN RPL8 PAK1 SPOCK1 LANCL1 PPP1R7 TPRG1L PSMB7 ZCCHC17 RPL38 CCK RNF181 SNRNP25 UQCRC2 OLA1 CRIP2 PSMA7 SLC6A17 CLTB NRCAM LAMTOR5 UBE2N ARHGAP6 DYNC1I1 AHNAK2 COX8A PLCXD2 BAD ADCY10P1 PNMA2 CAMK2N2 RRAGA BEX5 COL21A1 EGFL7 SUMO2 ROBO2 SPCS2 TMEM160 MAP7D1 NRIP3 CCDC169 OPCML EID1 REPS2 FIS1 MRPL52 GNG3 PRIM1 POLR2J ZMAT2 HDHD1 CST3 CAMKK2 PCDH15 MZT2B SCN4B PAM RLIM DYNLL2 REEP2 UBA1 BCAS1 GSTO1 MIEN1 CCDC85B ATP6V0D1 TCEAL2 ARL4D CIAPIN1 OAT KCNC2 ZNF804A SELM HTR2A ANXA1 SLITRK1 LMBR1 ASAP2 IFT52 CISD1 LYPD1 THSD7A GLRA3 PROKR2 GNB1 TOLLIP PACSIN1 PEG10 DYNLRB1 CDK14 SYT17 TIMP2 RPL36A ARF5 APOLD1 GPR78 PSMB3 RPL6 RP11-219A15.1 LINC01296 AC244489.1\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "cortical layer 5-6 excitatory neuron" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: SYT1 TBC1D15 NFIA SNAP25 CADM2 PDE1A CHN1 CALM2 ZNF385D PRNP TLE4 ZNF547 RPL31 RTN3 SCN3B DLC1 SYT11 CALM1 PRKCB PRKACB ANXA7 FTL SERINC1 MAP1B YWHAG LMO3 SCAMP5 ATP1B1 CLSTN1 RPL37A ENO2 RASGRF2 WBP11 AQP9 HSP90AB1 SERPINI1 GDI1 RELN KLHDC3 TSPAN7 RP11-111M22.2 PKM PCDHA10 ITFG1 ATP6V0E2 CA11 UCHL1 GHITM HMGCR VSNL1 TLN2 TEX2 RXFP1 EIF4A2 OCIAD1 PREPL GRIN2A ITM2B YWHAZ RAB40B SUMO2 UQCRB CKB SYNPR GNAQ PGM2L1 MORF4L1 NPFFR2 RTN4 WASF1 CYFIP2 TSPYL1 MGST3 LMO4 COX7C SYTL2 RAB3B IDS NR1I3 NCEH1 ATP2A2 CDC42SE2 TERF2IP SUCLA2 IQSEC1 CYCS MT-ND4 CLDND1 RAB4A PPP3CA ATP5C1 PLCB1 NKIRAS1 NHLH2 COX8A SLC12A5 MAGEH1 NDUFB10 KCNMB4 MAOB SEMA3C SEMA3D EDNRA ELMO1 TAS2R13 YWHAB ATP1A1 C3ORF80 OPCML NDFIP2 MTCH1 PACSIN1 FBXW11 ACTR10 ADCYAP1 NDRG4 SAP18 ARL2BP GPR37 CNTNAP5 TMEM59L PEA15 REEP5 NUAK1 SCG2 CDKN2D NUDT4 PRKCE ADAM23 EPHB1 RPL32 TBR1 TMEM130 MTRNR2L1 CAP2 SLC39A10 MARCKS FAIM2 APBB1 PAFAH1B2 DPY30 CDH8 OR6D1P SLC17A7 KLHL5 ARL8B SV2B HSPE1 CALM3 TMSB4XP4 RANBP1 MT-ND3 RPS5 PPP2R2B UQCRH MAGED2 NDUFB7 DGKG NEGR1 KCNA1 EFR3A SSTR2 RRM2B PPIA STX1A PTPRN FLOT2 NDUFB8 CPNE4 GPM6A STMN4 DPP6 HN1 TMA7 AKR1C2 KCNK2 ATP1A3 RPL38 DNAJC5 GDA GRIK3 DPYSL2 CLIP3 ATP2B4 CX3CL1 PDLIM5 ARL6IP1 NARS ZFAND5 MFSD6 NDUFB2 STK24 OLIG1 PHYHIP GNG3 LUZP2 ATP6V0B NAP1L2 PCDH17 NPTN CLTC RPL11 RHOB ITPR2 VDAC3 PAQR9 APP IPCEF1 NDFIP1 CAMK2D PNMAL1 FAT3 NDUFS5 MAL2 B3GALT2 RPL21 DIRAS2 UBQLN2 LRP1B ZBTB18 CCK RBX1 NFE2L1 HPCA RPL36A STMN3 PTCHD4 ARHGAP35 UHMK1 CSDE1 CORO2B HTR2A PPP3CB SMS MTPN MT-CO3 RPL8 PGAM1 ATP1B2 RPS27A TMEM141 TCEB2 TUBB4B TMSB4X ZMAT2 SIRPA AES GAPDH DLD SMIM13 RNF152 ARF3 UBE2QL1 LMBRD2 SKP1 CLU OXR1 UQCR10 ATP5E GUK1 KCNH5 ATG9B CERS6 POLR3H THY1 EDF1 NPTX1 PPP1CB AK5 TUBA1B ATP9A MT-ND2 HK1 NDP PPARGC1A ADTRP SEZ6L PCGF1 PSD3 LDHB MTRNR2L8 EPHB6 RPL41 MTRNR2L12\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "cortical layer 5-6 excitatory neuron" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: RAB3B MT-CO1 SNAP25 RP11-111M22.2 BIRC5 HNRNPA1P40 MAP1B NR1I3 SYT1 PLEKHD1 MT-CO2 RTN4 SEPW1 OR6D1P SCN3B MT-CO3 MT-ND4 CHN1 CABP1 FXYD6 THY1 CALM2 TMSB10 CKB FTL ENO2 NFIA PDE1A PRKCB SNAP91 PREPL ENC1 CADM2 MT-ND2 SNCA RPL21 STMN1 MT-ATP6 SYTL2 ZNF385D EPHB6 SPARCL1 ATP5B VSNL1 RTN1 HSP90AA1 HINT1 TUBA1A OXR1 SLC17A7 TOMM7 TUBA1B DCLK1 ARL6IP1 RPL35 KIF3C ATP1A3 DPYSL2 TBC1D15 CAPZA2 KLC1 CTNNA2 SLC39A10 CREG2 GNAQ CRYM CDC37 NDFIP2 SLC24A2 PEX5L RAB3C C19ORF70 SARAF SYN2 RPS28 CAMK2D PCDH17 CAPZB GRIN2A UQCR10 OCIAD1 PRUNE2 NPTX1 SLIT1 PEBP1 NRGN NDUFB2 NREP ACTB STX1A HN1 STXBP1 SERPINE2 MMD PFN2 RPL26 OAZ1 GDI1 MT-ND1 MTCH1 NUAK1 FTH1 SKP1 PGK1 GPATCH4 TMSB4X EIF4G2 NECAB1 ATP9A SERF2 LMO4 CACNB1 PDCD5 RPS15 RGS4 PNKD TCEB2 CISD1 PGM2L1 NDUFB1 JUND COX7C AP2M1 ZBTB18 RPL11 RPS3A PGAM1 CLIP3 NPTXR CALM1 PCDHGA5 GPM6A PSMD8 APP MTRNR2L1 GOT1 ANO3 MT-ND3 YWHAH SLITRK1 TPI1 SH3BGRL2 CDK17 COL6A1 YBEY NDUFB5 ARPP19 RPS2 MTRNR2L8 RHOB SYN1 SLC38A1 CAMK2G GDA MORF4L1 EIF1AX GAPDH EIF4A2 SPCS2 RNF11 CPLX1 TGOLN2 ATP2B2 RPL13 ATP5H MYL6B KCNAB2 EID1 CD24 PPP3CA CCK SYT4 RPL31 NUDT4 RTN3 OLA1 ALDOC PTPRN LMO3 TMA7 FAT3 MAST3 ATP5I MT-CYB TPPP PJA2 SCN1A UQCRH RAB3IP KCNH5 CD63 BEX5 MTRNR2L12 HTR2A ATP6V1B2 GNG3 UBL5 NDUFV1 SERINC3 COX6C NEFL VAMP2 SERINC1 NAPB PSAP OLFM1 CNTN1 SPOCK2 YWHAB SV2B TPD52 RP11-219A15.1 RNASEK-C17ORF49 ALDOA RELN IDS ARFGAP2 SNRPN CYB5R3 MTATP6P1 UBC SCN1B TKT MPC2 FAM134A CD59 CNR1 PCP4 CYP2R1 ATP6V0C AC244489.1 NIPA1 WSB2 NDUFAF2 COL21A1 GHITM PMEPA1 BCAT1 ATP5O KCNA1 DKK3 ACLY BCAS2 COX4I1 COL24A1 YAF2 NPAS4 ADSS RPL3 GLRA3 LYNX1 PPP2R2C RPL32 NEUROD2 OR2X1P PFKP FARSA TUBB2A PTMA SNAPC5 NELL1 APLP1 RASL11B DPY19L1 SEPT4 LMBRD2 USMG5 YJEFN3 SDCBP PEA15 AP2S1 RCAN2 BSN SPOCK1 RAB27B TCEAL7 MRPL55 FXYD7 FUNDC1 ANGPT2 TCEAL5 LINC01296 MAP7D2 GRINA PLD3 MFSD6 FGF12 FAM163B ARHGDIG ATP2B4 RHEB NDRG4 NDUFC2 RPS12 CDK14 ZFAND5 RNF181 LDB2 STMND1 RORB WASF1 CCT5 RAN SIRPA TOMM34 UBE2QL1 PIK3R1 GABRA1 MGST3 NDUFA5 ASPDH GUCY1B3 BAD HHATL UHMK1 CLTC LGALS1 CX3CL1 CLU DCC BCAP31 MTX3 MAGED2 RPL23A CLDND2 CLIC5 SAP18 ATP5J ITPR2 PHB NARS TOLLIP MFSD2A ETS2 MT3 SLC25A4 PLCB1 GUK1 BAI2 CAP2 KIF1A TOMM20 FKBP1A HSPB8 MAP1A SEZ6L2 HSPBP1 MTRNR2L6 NSF AP1S1 YWHAZ WDR47 CYCS CYFIP2 SNCB SLC12A5 CEND1 HOMER1 CAMKK2 TOMM70A NELL2 ADAM23 GSK3A MMP24-AS1 RASGRF1 PSD3 PTPRN2 SPTBN1 SDK2 HTR1F IGF1 CDH6 KIF21A KCNC2 GRPEL1 PNMA1 COX7B DCTN3 VSTM2L TSHZ2 ISCU MSMO1 PI4KA BASP1 SLCO4A1 COX17 SH3GL2 PRNP CERS6 AP2B1 ATP6V1F C11ORF31 SKAP2 CTSD UROD APBB1 TAGLN3 DIRAS1 PRKCG BSG IDH3A NDUFA1 PRKACB RAB40B UBA1 FAIM2 INA MAL2 TUBB4A CLSTN1 KLHL5 RPL18A PRDM8 ARHGDIA LRP1B LL0XNC01-16G2.1 SMIM13 DNM3 ACTR10 RSPO3 ZNF350 RTBDN ATP1A1 GAP43 CAMK4 HPCA REEP5 GPX1 ETV5 TUBB4B VDAC2 RPL41 SCAMP5 RABAC1 VEGFA APEH YWHAG TMTC1 SLC25A6 TUBA4A SPATA13 ZMAT2 PSMD12 SERPINI1 PRKAR1A BCKDK PTCHD4 PINK1 PARM1 EGFL7 SLC31A2 CMPK1 KIFAP3 EHD3 LCNL1 SLC22A17 EFR3A COX6A1 PAK1 NDUFS5 STUB1 PDGFRB NCDN UBA52 ATP5F1 DMTN COX7A1 APLF MAPK1 NDFIP1 NDUFB11 CHMP4B C14ORF132 ATP1B1 CPE CACNG3 TMEM35 CNDP1 PPM1A NGRN MAP2K4 ELAVL4 PKM COX6B1 ACTG1 NCALD ARL6IP5 ATP6V0E2 MYL6 MAPK8IP2 RPS6 NGEF ATP5C1 FOXP2 CRIM1 TBCA CTNND2 LAMA4 CADM3 MAPRE3 SSTR2 SYT11 RPS27A NEGR1 ATP5G3 CSDE1 PRKCE BTBD10 NDUFA13 PSMC1 CDKN2AIPNL ITM2B NEFM NMNAT2 RPL39 CHL1 EIF1 DYNLT3 PTGES3 PITPNA TLE4 CHI3L1 RP11-20I23.1 RAB5C HSPE1 ASAP1 AP3S1 RHBDD2 RPL17-C18ORF32 C18ORF32 LRRIQ1 MIF TUBB RPL13A\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "cortical layer 5-6 excitatory neuron" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MTRNR2L1 MT-CO1 PRNP RTN3 SNAP25 RPL41 DPYSL2 VSNL1 MORF4L2 MT-ND4 MT-CO3 SPOCK1 SYT1 B2M MT-ND3 RPS12 PSAP CALM2 NPTX1 GPATCH4 DNER HMP19 TMSB4X TUBA1B FAIM2 GABRA1 RPL18A RPL37A EIF4A2 GPM6A CLU PPP3CA RPL38 TMEM59L MAPRE3 NUAK1 CALM3 IDS PEBP1 MSMO1 TSPAN7 CHN1 NCAM2 SLITRK1 GFY SYT4 UROS MT-ATP6 CNTN1 REEP2 CAV1 NGRN PPIA ATP1A1 LMO3 CADPS2 TPPP YWHAZ BEX1 RAB3B SYTL2 MTRNR2L6 UBC ATP5A1 FOS ARPP19 SYNGR1 RAB6A NDN EIF1AX GDI1 TMOD2 MRFAP1 TUBA4A AES ACTC1 SPARCL1 TSPYL1 RPL32 C4ORF3 SNRNP25 RBX1 HSP90AB1 RNF11 CARNS1 ATP1B1 SCD5 DNM3 COX7C CDK5R1 ITM2C SERTM1 KLC1 SLC38A1 SOD1 PTK2B CFH ZFAND4 CDK17 UBE2N ATP2B2 RPS6 DYNLL1 RHBDD2 SRM TUBB4B CAMK2D MORF4L1 RSL24D1 KCNF1 VAMP2 RNF208 BNIP3 KCNA2 STMN2 ARF3 COX4I1 HMGCR SLC22A17 COL6A1 COX6B1 PNMA2 PMEPA1 DYNLL2 ENO2 ADD2 SNN THY1 TIMP2 ZMAT2 APLP2 ATP5I PRKAR1B FTH1 MC4R INPP5F STUB1 ITM2B PREPL PECAM1 TUBB2A DNAJC6 NRAS DGKG DMTN SLIT1 PRKACB QDPR MYL6B NEGR1 BASP1 MMD ISCU RASGRF2 PRKCE PGRMC1 CCDC74A PPDPF LPPR4 BIRC5 NAP1L3 TLE4 RPL35 SCN3B NRSN2 PPP2R2B STXBP1 CLSTN1 MDGA1 EIF4G2 WFS1 PTGER3 SERPINE2 RPS15 CCK CRKL ANKRD18A PRUNE2 ABHD14A UQCR10 SH3BGRL2 CFL1 ATP1A3 YWHAH ADAM23 RPL13 CNP CABP1 MTATP6P1 AP2B1 NGEF CNTROB SCAMP5 PJA2 NACC2 UBE2QL1 CX3CL1 SERINC3 ELAVL4 ADSS MZT1 NAP1L2 RAB6B ATP2A2 CACNB1 CDC37 TBCA MTCH1 STMN3 KLHL13 SYT6 SOX4 MAGED1 SEMA4G SEZ6 SERPINI1 MAP2K1 FXYD7 EID1 RPL15 LGALS1 TCEAL2 YIPF3 FABP7 SSBP3 NRGN ZBTB20 CAP2 VPS35 PGK1 TF RPS28 NSF RP11-219A15.1 ATP6V1G2 AC244489.1 PCDHA10 PCDHA4 PCDHAC1 PCDHA9\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "cortical layer 5-6 excitatory neuron" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MT-CO1 RAB3B SNAP25 MT-CO3 EIF4A2 MT-ND4 DCLK1 CHN1 GRIN2A SYT1 RTN3 RP11-111M22.2 MT-ND3 COL12A1 HMP19 CAMK2G SERINC3 MT-ATP6 MTRNR2L12 RPL13A ATP1B1 MT-CYB PCP4 UQCR10 MT-ND2 GRIK3 RPS6 CSDE1 MTRNR2L1 SERPINI1 EFHD2 CAP2 APLP2 PREPL PCDHGA5 CHL1 MT-CO2 APP CDK14 AK5 GRIK1 SLC24A2 SCN2B ARL8A LSM4 ATP5H RTN1 CALM2 RPL39 RPL7 PNMA2 SLC12A5 RPL10A TRHDE BIRC5 CFH C9ORF16 GNAQ SEZ6L SEPW1 OLFM1 ITM2A TRIB2 WASF1 GPR6 PCSK1 EDF1 SYT4 MYL6 H2AFZ TMX4 ATP6V1B2 PFDN1 MAP1LC3A STX1A RGS4 ATP6V1E1 PSD3 ADSS VAMP1 NPTX1 ANXA6 ANKRD20A11P FAIM2 EPB41L3 C18ORF32 ATP9A PSMC1 SCD5 SEMA4G NDUFA13 PCDH17 GDF10 RNF208 ATP5I SCAMP5 SKOR1 MAP2K1 COX6A1 D4S234E CDH13 PPP3CA CALCRL RPS26 EXTL2 MSMO1 SPOCK1 GLUL LMO3 MTRNR2L6 NDUFB4 SULT4A1 ATP5A1 KIFAP3 SYNGR1 BAG4 MAST3 CRYM AQP4 TSPAN7 NRGN ATP1A3 ARL4D RPL32 PFDN4 PRKCE BEX2 ZNF385A SOX11 DCTN1 HOMER1 CAMK4 GUCY1A3 CX3CL1 PPP2CA CAMK2N2 UCHL1 FABP5 QDPR SYN2 RANBP1 VDAC1 PCDHA10 LAMTOR5 AP2M1 CD163L1 ATP5G2 ABHD14A MYEOV2 PPP2R2B DNM3 TOMM34 SHC4 PVRL2 COL11A1 TMTC1 STXBP1 MT-ND1 CHP1 ATP1B2 ATP6AP1 NKIRAS1 NUAK1 CA11 CTNNA2 RP11-1396O13.2 MTATP6P1 NDUFB5 KLHL5 CLDND2 SLC38A1 RPL21 CALM1 NGFRAP1 COL25A1 PPP1CB MOBP HS6ST3 MAPK8IP2 BASP1 RPS15 OXR1 ATP1A1 TMSB10 PDP1 SPARCL1 POMP COPS8 TSC22D1 PLCB1 DMTN COX4I1 SCN3B CD59 SSBP3 GPM6A FAM163B STMN2 SLC7A8 PRKCB MAP1B PRKAR1B ETV1 RAB3C ADD2 OPCML PGRMC1 DPP6 GREM2 RPL12 ROBO3 PRKAR1A RASL11B ANXA4 UBE2QL1 MPPED1 PTCHD4 NEUROD6 ELAVL4 PRKACB TSHZ2 LRP1B ARHGAP29 GRINA ARHGAP35 DIRAS2 MAP4 SPON1 RPS28 NEFH IDS MYOM2 TRIM59 DISC1 RPL17 RPL41 RPL17-C18ORF32 FRMPD2 SYT5 TBC1D15 ZNF385D SYTL2\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "cortical layer 5-6 excitatory neuron" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MT-ND4 MT-CO3 MT-ND3 MT-CO1 MT-ATP6 MT-CO2 MT-CYB CHN1 PRNP SERINC1 MTRNR2L1 PEBP1 YWHAB ATP6V0E2 CAMK2D ATP2B4 CALM2 NRGN TSPYL1 GPM6A PPDPF MTRNR2L12 SYT1 MT-ND1 MT-ND2 BIRC5 MAP1B PSAP TF TMEM59L CREG2 ENO1 MT-ND5 THY1 CLU ANXA6 REEP5 UCHL1 TMOD2 BEX2 MYBL1 FKBP8 KIF1A GRIN2A STMN4 TMSB4X ATP5B RPL31 NAP1L3 PPA1 QDPR HHATL STMN2 CAPZB CYFIP2 PREPL NPTX1 PTPRT ATP1B1 ATP2B2 MTATP6P1 BASP1 CADM2 CDK5R1 SLC25A4 IDS NTHL1 SLC39A10 AP2M1 RHOA GSK3A SYT11 NRCAM NDN SCN1A KLF2 NCALD ATP1A3 DYNLL1 CALM3 KCNA2 RPL39 PGRMC1 ENO2 TUBA1B NMNAT2 SNAP25 GRIN1 YWHAH TUBB4A ITM2B DYNC1I1 KLC1 USMG5 KCNMB4 HSP90AA1 JUND NEFH PFN2 PCDHGA10 VAMP2 FAM127A RPL32 CNTNAP3 UBC MAP2K1 CXXC4 DNAJB6 SLC25A53 PRKCB FAIM2 TBC1D15 ANXA7 TCEAL2 ARL6IP1 SYT4 MTCH1 RTN4 INPP5F C1QBP PPIA CAMK2G TMA7 MRPL37 MAP1LC3B UQCRH PGM2L1 USP27X CKB ATP5A1 MLLT11 LMO4 KIF21A LRP1B SYTL2 RPL13A RAB3B ZNF385D NDUFA13 RPS15 GTF2H2C_2 TUBB CYB5R3\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "cortical layer 5-6 excitatory neuron" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MT-CO1 MT-CO3 MT-CO2 SYT1 CHN1 GPM6A SNAP25 MAP1B MT-ND3 GDI1 CALM2 NDRG4 PREPL MTRNR2L1 TMX4 MT-ND4 WASF1 DIRAS2 RAB3B PPP2R1A SPOCK1 PCP4 NRGN MT-ND1 RAB6B ACTB CALM1 BASP1 ITM2C NRCAM SERINC1 TAGLN3 HSP90AA1 CX3CL1 PIK3R1 SNCA ENO2 NXPH2 TMEM155 PJA2 PPIA CDK5R1 MTRNR2L12 RPH3A ATP1B1 FAIM2 TUBA1B PNMAL2 YWHAH VAMP2 ATP1A3 EIF1B ARL6IP1 SCAMP5 TSPYL1 TRHDE CNTN1 SPOCK2 RTN3 SCD5 MT-CYB IDS ARFGAP2 SNRPN TUBB2A DPYSL2 DPY19L1 SUB1 GPR158 SYNJ1 OAZ1 ITM2B LMO4 GHITM ATP1A1 PRNP PPP3CB CALM3 MT-ATP6 ATP2A2 STRAP NPTXR GRIK1 DUSP6 SNCB SLC38A1 CAPZA2 RAPGEF5 RTN4 PEX5L PKM RCAN3 CHL1 MT-ND2 TSPAN7 SEZ6 UQCR10 NPTN SUMO2 MTATP6P1 B3GALT2 PDE9A SLC17A7 PRKACB GAPDH SAP18 YWHAG COPG1 GRIN2A NTN4 HSP90AB1 PAFAH1B2 OXR1 PNMA2 ETV1 ZFAND5 NREP CERS6 NAP1L5 CPE ANXA7 PRKAR1A SV2B SLC24A2 CRIM1 EFHD2 MAP2K4 ITFG1 CLPTM1 STMN1 EPS15 SPCS2 MAL2 ASB13 MTRNR2L8 TLE4 ARL4C PPP2R4 BIRC3 TKT RCAN2 GALNT14 EID1 DDX3YP1 NXPH3 SPHKAP PCMT1 GMFB NEXN TSPAN4 HDAC1 NEFH PIN1 ZMAT2 ALDOC OR2X1P PDCD5 ATP6V1G1 FAM71E1 BRICD5 MYL6 CLU OLR1 IPCEF1 EFR3A NDUFB7 TMTC1 KLC1 GABRA1 GDF10 PPDPF TPT1 UCHL1 MORF4L2 PNKD RHOA CADPS2 CRIP2 RAB11A MAP1A PFKP EIF4A2 IQSEC1 KIF3C TGOLN2 CKB EIF4G2 BCL11B PEBP1 ATP6V0D1 DYNC1I1 NNAT NEUROD6 MTPN TBCB NEGR1 GRIN1 CRKL ISOC1 COL6A1 CLSTN1 FBXL15 RHOB UBE2M DPP6 ATP2C2 GRIN3A DYNLT3 HCN1 NAP1L3 ELAVL4 SH3GL2 MAPK1 PDLIM1 NOV COPS8 DCLK1 UBE2V2 ATP6AP2 SMIM13 SALL2 PAM ADAM23 LMBRD2 CYP26B1 ATXN10 ARPP19 ATP6V0C MFSD6 LGI3 CADM2 WSB2 CHGB MAP4 NDFIP2 PRDX1 ARF5 CAMK2G CD63 GABARAPL1 DUSP4 TMEM130 UBQLN2 SYNPR GNB1 NHP2L1 GRINA STX1A LDB2 SLC9A6 WDR4 NDFIP1 RHEB CLTC ATP2B2 SNX10 C1ORF115 COL11A1 UBA1 FAM163B AP2B1 FXYD7 TMEM11 RNF11 DSTN DCC LAMTOR5 NDUFA11 NELL2 FABP5 TMEM59L PLCB2 CDH6 MRPS21 KCNV1 DNAJB6 TOX POLR2M PPTC7 BSG PSAP EIF1AX PSD3 KLF2 CDK14 LMO3 TMEM35 COTL1 CFL1 DCTN1 KIF5A MGST1 PPP3R1 UROS MAP1LC3A TCEA2 SCOC VPS35 KIF21A PPP3CA ELAVL2 CRYM COL24A1 RAB3C MRPS7 TP53I11 ASAP1 PGAM1 APLP2 MPPED1 CAMK2D RFK NDUFB8 PRUNE2 TRMT112 FAM84A RPS12 C14ORF39 SLC30A3 LUZP2 DYNLRB1 MTUS1 ISCA1 APBB1 SLC35B1 ATP2B4 NRN1 FBXW11 MTRNR2L6 FTH1 SERPINI1 APP FRMPD2 MAPKAPK2 AKAP12 PEF1 RPL8 NRAS ATP9A SARAF RAB2A COL12A1 APEH PPP2R2C ELFN1 PTMA VSNL1 RP11-195F19.5 IDH3A RELL1 MMD ETV5 ACTG1 ZBTB18 ARL8A SYT13 FASN NDUFC1 TSHZ2 INSIG1 YJEFN3 PCBP1 PCSK1 NAT8L MAGED2 SLC12A5 STX1B RGS4 PRKCG RP11-20I23.1 SDCBP SCN3B DNAJC5 PGM2L1 TMEM120A PHYHIPL RAB40B STMN2 KCNF1 SNAP91 NAA38 RPL37A PET100 RPL38 ANO3 GPX4 ERBB3 PRDX2 LMCD1 NGFRAP1 LINGO1 USP27X TUBB3 SLC26A10 ALDOA NUDT4 B2M MBOAT7 PLEKHD1 HNRNPA1P40 RPL17 RPL17-C18ORF32 PCDHA4 PCDHAC1 PCDHA10 PCDHA9 PCDHGA5 PCDHGA10 PCDHGA6\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "cortical layer 5-6 excitatory neuron" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: SNAP25 ZNF385D RAB3B CCK SYT1 RP11-111M22.2 ATP1B1 RTN3 ENC1 YWHAG NR1I3 NRCAM PRKCB SPARCL1 SLC39A10 SEPW1 CABP1 CHN1 RTN4 AK5 PLEKHD1 TBC1D15 BSCL2 SARAF GRIN2A OLFM1 CALM2 LMO4 SLC12A5 PNMA1 TSPAN7 UQCRC1 MAPK1 UCHL1 DYNC1I1 CLU SERINC3 RPL32 ARPP19 PREPL IGSF21 TCEAL3 YWHAH PRNP PRKACB NFIA DPYSL2 TUBB2A ARFGAP2 CALM3 BEX2 EFR3A PSAP RPL8 MRPL55 SSBP3 COL6A1 RTN1 RPL7 ETFB ARF3 RPL3 GDI1 COX7A2 BIRC5 TMSB4X RPL21 RPS10 SPTBN1 CD63 BAI2 ATP6V0B BEX4 NEUROD2 FTH1 COPRS RELN MAP1B TUBA1B APP LMO3 SULT4A1 NECAB1 PGM2L1 RPS6 SLC24A2 NUAK1 ATOX1 PCMT1 MAGEH1 RAB6B SKP1 APLP2 GNAQ KCNAB2 NGFRAP1 C14ORF2 TUBB4A PLCB1 NEFL MT-CO2 RPL26 MT-CO1 PEX5L LGALS1 NDUFAB1 TMEM59L FKBP8 GPM6A HSP90AA1 KIF1A EHD3 COX7A2L MAP2K1 FAT3 HSP90AB1 OR6D1P LDB2 TMEM130 VPS35 MAL2 CLDND1 YWHAZ ANKRD20A11P RAB40B ASPDH PTK2B DKK3 C1ORF115 RLIM PNPLA5 TCEB2 TMA7 NDUFA8 COPS8 NDUFA4 SH3GL2 ARHGAP29 NDUFS6 MTPN OLA1 MAP1A GSTT1 AES BSN ENO1 SCG2 PSMC1 PJA2 NDUFA13 RPS26 POLD1 INSIG1 SOD1 ASAP1 NDUFB5 MAPRE2 SLC25A4 RAB11A VDAC1 CDC37 SUB1 ELMO1 NDUFB2 ANO3 YWHAQ RPS12 CTSD RPL37A GUK1 RPS4X ATP6V1B2 CALM1 PHYHIP BEX1 PEA15 KCNF1 OPN3 SIRPA RGS4 ACTR1A IPCEF1 ATP5J WDR47 NEFM NAT8L MCHR2 GPR37 ST20 METTL18 ENSA ATP2B4 COX7A1 PPP1CB ADSS PPP5D1 MRPL33 PET100 ATP5E SYT17 SYT4 MT-CO3 CDH13 MTCH1 ACTG1 COX7C TOMM70A NREP STXBP1 PSMC5 STUB1 RPL6 ATP6V0D1 NFE2L1 NELL2 NBL1 MLLT11 DNM3 NPTN MAP2K4 PRKAR1B TMOD2 SYT11 RANBP1 COL5A3 KIF21A ITFG1 ATP2A2 SH3BGRL2 LANCL1 C19ORF70 SYNGR1 TSPYL1 PTMA AZIN1 ITM2B SLC35B1 NRN1 MSMO1 NMNAT2 TMX4 UBE2N GRIK1 SV2B ARL6IP1 BAALC PCP4 IMMP1L COX14 LRRIQ1 GRINA ATP5A1 PGAM1 GABRG1 ZNF365 UBQLN2 LINC01296 NKIRAS1 CISD1 SERPINE2 STMN4 AP2B1 STMN1 CHL1 CD59 VGF RABAC1 ATG101 C11ORF31 NDUFA1 TPPP SERPINI1 ATP5I GPR26 PSMD12 HMGCS1 RTBDN HPCA ATP5G1 FAM198B SLC8A2 C2ORF47 INPP5F SLC9A6 MTRNR2L12 PPDPF DNAJB6 UBE2V2 CA10 SLC22A17 SLIT1 BASP1 CDC42SE2 CDKN2D SSTR2 ELAVL2 SCN2B NAPB OPCML SCN3B GAPDH OXR1 DNAJB9 FAM134A MRPL52 COX5B ETV1 PPP3CA RPL31 DMTN YAF2 UQCRC2 FAIM2 ANXA6 NDUFA11 CERS6 PTPRS TSPYL4 LPPR4 SQLE WSB2 MAGED1 ENOPH1 NPTX1 HOMER1 CACNA1H UROD PPARGC1A RPL13A ARL8B FSCN1 TNNT2 SLC25A22 PIK3R1 PPM1A UBL5 RFK CLEC2L PVRL1 SAP18 FKBP4 GRM3 NDUFB8 SEZ6L2 RPS15 SNCB CNTNAP5 CTNNA2 REEP5 PSENEN PFN2 YWHAB ATP9A RPL10A ZBTB18 CYCS GNB1 HMGCR STX1A SERINC1 LINGO1 CNIH3 NDUFA5 C19ORF53 HK1 ATP6V0E2 CDKN2AIPNL KCNAB1 ALDOA KRAS PRUNE2 SCN1A DNAJC6 PPP2R2B PPIA KLC1 TOMM20 TMEM158 COMMD6 MDH1 MT-ND2 RASGRF1 C9ORF16 CCM2L VAMP2 YJEFN3 FGF12 DRAP1 COPS7A ACTR6 RPL41 TUBB3 IDS MYOM2 AC244489.1 PCDHGA5 PCDHGA6 PCDHGA10\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "cortical layer 5-6 excitatory neuron" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: RPL38 RPL31 SNAP25 RPL32 RPL37A CHN1 SEPW1 RPL36A YWHAB RPS6 RPS15 NDUFB10 NDUFAF2 CPNE8 RPL39 CPLX2 RPS28 RPS5 RPL6 ATP6AP2 FABP6 TMA7 RGS4 CKB AP3S1 EIF1B NRGN NDFIP1 NUP37 SYTL2 RAB3B TUBA1A ATP5G2 SYNPR DIRAS1 ENO2 TBC1D15 CCK BEX1 RPS10 RPL23A TPRG1L RPL15 NDUFB3 CABP1 NEFM CADM2 PSMC5 RHBDD2 SYT1 DRAP1 GUK1 RPL7 MT-ATP6 RPL26 GRIN2A IPCEF1 PLD3 GPM6A NELL2 FAM127A NFIA GRINA BEX2 ALDOA ATP5E STXBP1 NPTN ALDOC MZT1 ITFG1 RPL21 RTN1 STX1A MT-CYB TSPYL1 ARFGAP2 PPP3R1 RPS27A RTN3 RPL11 DCLK1 RPL3 USMG5 SNAP91 RPL18A BIRC5 UBE2QL1 TESPA1 OXR1 HSP90AB1 SH3GL2 SNCG NAPB MT-CO3 IL4R PEBP1 TCEB2 ETV5 TMSB4X ABHD14A NOP10 DNAJC21 CAMK2G KIF5A PTGES3 NAT8L COX7C ATP2B4 NCOA4 GPR88 MT-ND1 TUBD1 PKM STMN4 SNX10 SYT11 RPL35 GOT1 MAP4 PLP1 SNRNP25 NDUFB1 YAF2 CLPTM1 IGFBP6 TAGLN3 CDK5R1 KLC1 PSD3 DYNC1I1 NUAK1 STMN3 BLOC1S1 SEZ6L ASAP1 AES SEZ6L2 PGK1 ARF3 TUBB4A SLC25A22 NRCAM PPM1A STK24 NFE2L1 DPY19L1 STMN1 VSNL1 NBL1 NAP1L2 C14ORF2 INPP5F CDC37 CORO2B ATP5I LL0XNC01-16G2.1 SYNPO GRIK3 MAP1LC3A MORF4L2 PHYHIP GABARAP IDS RPL41 NSF LINC01296 RPS3A AC244489.1 PCDHGA10 PCDHGA6 PCDHGA5\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "cortical layer 5-6 excitatory neuron" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: RAB3B SYT1 BIRC5 YWHAH ARL6IP1 MT-CO1 RP11-111M22.2 RTN4 CCK RTN3 GRIN2A STXBP1 CAMK2G TUBA1B CHN1 SNAP25 CLU ENO2 DPYSL2 PNKD STMN1 PRKACB CLSTN2 NPTX1 PREPL CALM1 NR1I3 SSTR2 OAZ1 STMN4 PRKCB PCDHA4 OLFM1 CMAS NCEH1 BEX1 COX7C RAB6A TESPA1 RPL21 NFIA PPP3CA ENC1 NGEF NAPB MAPK8IP2 MAP1B CALM3 SERPINE2 FTL NEFL SYTL2 OR6D1P SH3GL2 SV2B MAP1A MT-ND1 PDE1A RPL35 MAPK1 SYNGR3 SNCA VSNL1 MDH1 ONECUT2 WASF1 IL20RB RPL32 COX7A1 DCTN1 NGFRAP1 COX4I1 NECAB1 NEGR1 LYNX1 NPTX2 RAB3A USMG5 NELL1 ADAM23 RPL17-C18ORF32 RP11-20I23.1 HSP90AB1 GSK3A UHMK1 FAIM2 HSP90AA1 MT-CO2 GPX1 ATP6V0D1 ARF1 OXR1 VAMP2 CALM2 GAPDH CDK5R1 ANXA6 PRUNE2 MAP2K4 NPAS3 ATP1A3 MT-CO3 PPIA PLD3 SCN3B MTRNR2L1 ATP6V0B TMSB10 BSN UQCRC2 GDA GPM6A SYNGR1 GAP43 BEX4 PHYHIP PPP1R7 IPCEF1 MT-CYB KIF21A CADM2 NRN1 ATP1B1 KRT17P6 MTRNR2L12 SPARCL1 BASP1 TM2D3 TMEM59L ATP6V0C NDUFA4 LRP1B ZNF880 MAST3 QKI IDS PLEKHD1 ZNF385D MIR6723 TUBD1 COL6A1 SEPT4 RPL38 CACNA1H EIF1B MRPS21 MT-ND3 SLC24A2 SMYD2 SIRPA CCDC141 ANAPC11 RABAC1 NEFM MRAS KCNC3 APP C9ORF24 RAB37 MORF4L2 DNAJB6 PPP2R2B PSMC1 MTPN GNAQ CALCRL KCNAB2 UQCR10 PEA15 MYL6B PCP4 STMN2 NDFIP1 CLSTN1 DYNLL1 C14ORF2 PACSIN1 DNM3 TMEM258 PRDX1 AZIN1 HS3ST2 MT-ATP6 MRFAP1 LMBR1 UBE2D2 NDUFA5 SLC17A7 EGR1 ATP5J2 RAP1GDS1 PEX5L NDUFA12 CISD1 B3GALT2 CDK5 DGUOK SNRPN MAGED1 PINK1 NFE2L1 PCDH17 RHOB NDUFV1 CTXN1 EIF1AX NELL2 RP11-82O19.2 UCHL1 AP1S1 ATP5O PSMB3 SCOC COX8A C16ORF93 SUB1 ELAVL2 SLC39A10 TMEM155 FTH1 OAT LDB2 RPL41 UBQLN2 MSMO1 GPX4 ATRN WASL TUBB2A DYNLL2 ACTG1 ATP5E GOT1 NDUFB8 RAP1GAP2 RNASEK-C17ORF49 IDH3A NBL1 CDKN1A SST LMO4 SCN1A ATP5G3 MRPS7 SALL1 TBCA NAP1L3 CABP1 ASAP1 RPL13A CRIM1 NARS PCDHB10 HCN1 SERP2 STX1A PGAM1 SLC8A2 SEZ6L2 ALDH1A1 GABRA5 STMN3 SPTBN1 FGF12 CERS6 DGKG RPS5 C1ORF233 RHOA FXYD6 CKB LPPR4 HMGCR CA11 SYT13 NDUFB1 COPG1 BTBD10 ROBO2 LIN7B ATP1A1 C11ORF31 AK5 RAB11FIP5 LMO3 POLR2L BRK1 RPL18A TPRG1L CHGB PFN2 RPS3A EBF4 ATP5I FUNDC1 SKP1 ESYT1 INCENP RPLP0P2 DHCR24 CD59 MTCH1 OLIG2 MFSD6 PFKP EIF4G2 KREMEN2 COX7A2L ALDOA ERH GABRA1 PI4KA PPP3CB RPL10A PJA2 RPL8 FIS1 ATP6V1E1 GABARAPL1 HOPX ALDH5A1 TMX4 PTMA NUDT21 ARPP19 NOV H2AFZ ATP5B SEMA5A PDP1 PGRMC1 PIK3R1 SNCB ACTR6 NRCAM SLC12A5 RIT2 SYN2 PTPRN GNG3 SSBP3 KCNC2 RFK NEUROD6 CDK14 PAM HINT1 TGOLN2 MAP2K1 CFL1 OPN3 DNAJC6 COX5B NDUFS5 MTRNR2L8 LSM4 SYNJ1 TPT1 ARL8B RPS28 CACNG6 FABP5 CRIP2 TOX2 TPI1 EIF4A2 NDUFA11 PCMT1 FERMT1 RGCC TMEM35 PAK1 PEBP1 LINC00116 SARAF HOMER1 ISCU PRDX2 RPL6 NAPA NDUFB10 SCN4B NPTXR COL24A1 TCEB1 RPL3 ATP6V1F YWHAG MGST3 NKIRAS1 RPL11 SERINC1 SERF2 MANBAL TOMM20 GHITM RPL31 GUK1 NPTN DIRAS2 SLIT1 HS3ST5 NRGN SH3BGRL2 CADM3 REEP2 CREG2 GUCY1A3 ZMAT2 ENSA WBP2 APLP2 C16ORF13 RAB2A S100A6 SNAP91 SYT11 RAP2A PRNP KRAS PTGES3 IGSF21 PGM2L1 RPS4X EFR3A KIF1A CHMP5 NGRN NDUFB4 SCN2B LMBRD2 RPS26 WI2-1896O14.1 PSMD2 CHL1 BAI2 EIF1 RNF181 FAT3 SLC26A10 NSF TUBB3 BSCL2 NDUFA13 RPL36A ATP6V1G2 AC244489.1\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "cortical layer 5-6 excitatory neuron" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MT-CO3 MT-CO1 MT-ND3 MT-CO2 SNAP25 MTRNR2L1 YWHAB MT-CYB TUBA1B NPTX1 ENC1 PTK2B MT-ATP6 UHMK1 CADM2 RPL32 ENO2 MAP1LC3A GPM6A LMO3 SYT1 MT-ND2 NFIA RAB3B NR1I3 DCLK1 RELN NECAB1 DYNLL1 SLIT1 WDR47 SSBP3 FTH1 SCN3B PRNP HSP90AA1 NDFIP1 COX7C RP11-111M22.2 STXBP1 APLP2 GDI1 FAT3 MTATP6P1 MT-ND1 CHN1 ATP9A CEND1 EIF4A2 MT-ND4 DPYSL2 PCDHA10 DNAJC21 HNRNPA1P40 MTRNR2L6 ESCO2 PFKP ATP5E SARAF PREPL KIF1A TMTC1 GRIN2A CABP1 LDB2 DCTN3 DYNC1I1 GPX4 RPL13 TMX4 RTN4R RAB6B ARPC4 TUBA4A PRKAR1A RNASEK-C17ORF49 CDK5R1 PDP1 EPDR1 RPS4X TSPAN7 RPS28 GDA B3GALT2 KIFAP3 DNAJB6 SYT3 CALM1 DNAJC6 PRKACB RPL41 ATP2A2 NAP1L3 TBCA KLC2 LRP1B HRH3 SERINC3 CREG2 SNCA GABRA1 TSC22D1 TERF2IP NPTN MAP1B RPL38 BSG RTN3 FASN SNCB TCEAL3 GPR37 QKI PGRMC1 GAPDH CTNND2 SYNJ1 PPA1 HMGCR LINGO1 MTCH1 PLD3 FAM219A CFL1 NDUFB1 BCAS2 RPL31 HHIP MGST3 EXTL2 TNNT2 RTN1 RTN4 SIRPA ZBTB20 RPL8 COX7B CKB ACTG1 UBE2QL1 CPLX1 KLC1 CACNB1 UBA1 RPL7 WARS IPCEF1 APBB1 MORF4L1 SRP9 GDE1 HSP90AB1 WASL SLC12A5 LINC01296 GABARAPL1 TNS1 JUND NAP1L2 SLC25A4 DMTN WASF1 MYRIP STMN2 SEZ6L2 ARPP19 MLLT11 ARL2BP GUCY1A3 FXYD6 RPL36A PCDH18 TIMP2 OR2X1P CALM2 RXFP1 RPL26 NEUROD2 DCTN1 CSDE1 NDRG4 FABP5 TM6SF1 PJA2 PSAP NUAK1 GNAQ GNB1 MT-ND5 SPOCK1 SV2B MAPRE2 MYL6 AES RPS27A SULT4A1 PTGES3 FAM131B NCDN CBX6 UBE2M MAP2K1 SLC1A2 BSCL2 MIF PCDHA4\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "cortical layer 5-6 excitatory neuron" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MT-CO1 MT-CO3 MT-CO2 RAB3B MT-ND2 CHN1 MT-ATP6 SYNPR MTRNR2L12 MTRNR2L1 MT-ND1 MT-ND4 UBE2V2 TBC1D15 RPL13 SNAP25 RAB6A COX4I1 MTRNR2L8 NUAK1 UQCRB BIRC5 TNNT2 RP11-111M22.2 MT-CYB TSPYL1 DKK3 MAP1B UQCRC2 RPL31 ARPP19 CREG2 TUBA1B SERINC1 RPL15 MT-ND3 MT-ND5 JUND MTRNR2L6 TF C7ORF50 SPARCL1 FAM134A THBS4 UQCRC1 BASP1 STXBP1 NRGN TKT MTUS1 CTNND2 C14ORF2 DYNLL1 SPATA13 ATP6V1E1 ENC1 LDB2 C11ORF31 TESPA1 SYT10 MTND1P23 NDRG4 MTATP6P1 NPTN GRINA NFIA THY1 SCAMP5 PSMC3 FAM149B1 RPS15 EIF4A2 TLE4 RTN1 HEATR4 STMN1 SLC12A5 TRAPPC1 IQCK VSNL1 CLTC PRKCB PET100 TOLLIP AP2B1 RGS12 FGF12 ITPR2 NGEF HOMER1 PARP9 MGST3 RNF11 FBXL16 STK32B VAMP2 MCHR2 PREPL SUMO2 MORF4L2 PPP3CB CKB RAB6B WASF1 RAB11A ASNA1 ARF3 PRNP NCOA4 TAGLN3 PPP3CA DCLK1 NPTX1 CHGB COX7C TUBB2A YWHAG TSPAN7 YWHAQ ARL6IP1 ELAVL4 SLC17A7 SLC38A1 SPOCK1 ADAM23 TMEM35 AZIN1 CLIP3 PNMA1 PDE1A SKAP2 NDUFAF2 LAMA4 CTBP1 GABRA1 POSTN NRCAM STMN3 TEX2 GDI1 MAPK1 CA10 CPNE4 SPOCK3 ATP2B2 CDC42SE2 LRFN3 PEF1 OLFM1 ATP6V1C1 ANGPTL4 SLC24A2 FKBP1A ZNF365 FTH1 SNRPN CNTNAP3 RELN NEFH CSDE1 STX1A CISD1 SNAP91 SYT4 MAST3 MORF4L1 FAM3C GTF2H2C_2 ERBB3\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "cortical layer 5-6 excitatory neuron" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: SNAP25 TLE4 MTRNR2L1 CALM2 SYT1 MT-CO1 CHN1 PNMA2 MTRNR2L12 MAP1B TUBA1B PPIA PCDH17 ACTB DIRAS2 MT-CO2 DCLK1 RPL31 RTN3 IDS NGFRAP1 RPL6 PEBP1 MT-ND2 RGS4 GPM6A NGRN TSPAN7 MT-ND4 BASP1 GNB1 TMSB4X PREPL MTRNR2L6 LRP1B UQCR10 OXR1 ANXA7 ALDOC MAP2K1 RPL32 NDRG4 HSP90AA1 RPL41 FABP5 PRUNE2 HSP90AB1 PGM2L1 PRKCB HTR2C SKP1 RAB3IP CALM1 PRKACB NRGN RPL38 TERF2IP PRKAR1B TMSB10 SNCA MT-ND3 CAPZA2 SLC6A17 ATP5I YWHAZ BAALC COL11A1 RTN4 SEZ6L2 GRIN2A MT-ND1 ATP1A1 UQCRB CALM3 PCP4 PTPRT BIRC5 OPCML APP AP2M1 SPARCL1 ATP6V0E2 TMEM59L NRIP3 VSNL1 MTRNR2L8 EID1 RPL23A TRHDE BTBD10 NDUFA5 CDH6 ALCAM RP11-111M22.2 FBXL15 PFN2 ENO2 ACTR1A DPYSL2 MT-CO3 COX6A1 FGF12 ARF3 TMA7 RPS10 PNKP RTN1 CLSTN1 USP5 KIF21A GDA GNAQ MORF4L1 EFR3A SPTBN1 ATP1A3 HS3ST4 VDAC1 PSMA7 MARCKS PINK1 ATP2A2 GABRA1 ARL6IP1 PHYHIPL NAP1L2 SLC1A2 COPE PRDX2 PEX5L STRAP KIF5A SEPW1 COX7C SIRPA TMX4 GRIK1 NAPB PGRMC1 SV2B ATP1B1 IPCEF1 DPP6 SNX3 HIST1H4H CCDC85B TUBB4A ITFG1 MT-ND5 UCHL1 KIF3C SERINC1 NFE2L1 PSAP SCN1A NRCAM EPHB6 PHYHIP TUBB2A EIF5A2 C1ORF233 INPP5F NDUFB8 SCN3B GAPDH THY1 EPB41L3 ITM2B PSD3 KLC1 GRINA CTNNB1 GHITM RAB1A RAB3B OR6D1P TUBA1A CMPK1 NEFM TDRD7 GPR158 GPX3 STMN3 OXCT1 ACLY MFSD6 ATP2B4 RTBDN EDF1 DUSP4 PPP3CA MAP1LC3B PCSK1N DKK3 EPS15 SLC39A10 SLC1A3 TCEB1 RHBDD2 PPP3R1 RPL13A MYBPHL RPL8 SRP14 PPP2R4 ATP11C BEX1 STK24 UQCRQ SCOC COX4I1 RRAGA NDUFA4L2 ZFAND5 YJEFN3 SYNJ1 SNCB SOD1 CYP26B1 SAMD3 ITM2C BCL11B B3GNT1 CRYM NCDN RPL15 FARSA TAGLN3 PJA2 WWTR1 TSPYL1 UBB LMO4 ZBTB18 POLR2L NME1 TGOLN2 COX6C CAMK4 SUCLA2 SCD5 NAT8L NRF1 FTL TMEM155 TBR1 RAB6B EIF4A2 HSPE1P16 UQCR11 TEX2 HTR2A PCYT2 BSCL2 CD63 MET GRIN1 RPL26 C1ORF95 FEZF2 DDX3YP1 CTXN1 MAP2K4 NDFIP1 LRP2 NDUFB2 PAFAH1B2 SLC9A6 FIBP MEIG1 C14ORF2 SYT13 TMEM258 IMMP1L KIAA1045 RAB7A GRIN3A TMEM141 RPS28 REPS2 FABP7 ZNF365 MRPS7 MAPK1 COL24A1 EFHD2 UBL5 GLIPR1 AP1S1 TAC1 NDUFAB1 MED31 COX7B AC244489.1 MRPL52 OPA1 GMFB YIPF3 NDUFA1 ETV1 REEP5 MPPED1 NDRG3 OAZ1 CX3CL1 PGK1 RPL37A PSMD12 BANF1 SLC25A6 GABRA5 CPE UBE2E3 ATP5E GRPEL1 UBC TMEM147 PSMB5 CPLX1 CYC1 NDUFAF2 SKOR1 ACP1 THSD7A PPP3CB DPY19L1 RELN RAN DUSP1 TOMM22 SUB1 HMP19 CMAS NRN1 GPX4 PRELID1 GPCPD1 HSPE1 TPT1 ACTR10 NEFL ERBB4 TMEM14A NDFIP2 DSTN MAP1A GABARAPL2 BAG4 ATP6V0B SERPINI1 POLR2I CAPNS1 RPL17-C18ORF32 STUB1 ERG RASGRF2 LMBRD2 TSHZ2 DYNLL1 WASF1 FAM3C C4ORF3 MYL12B CDK5R2 C11ORF31 CAB39 ATP2B2 RPL12 SNX10 ATP2C2 CDH13 EIF1AX MORF4L2 RNF11 NXPH2 MDH1 DLC1 ATP5J2 DYNLL2 VEGFA TM6SF1 TSPYL4 SERINC3 PTPRM WASL NWD2 ACOT7 ARL8A EIF1B NDUFC2 RPL3 SEZ6L STMN1 PNKD MYRIP AP2S1 TKT ALDH5A1 RPL17 NPTN WDR47 COL6A1 SLC17A6 APLP2 WBP11 CNTN1 C12ORF57 ERH CAMK2D FBXO8 EXTL2 KRAS ALDOA PRKAR1A BSG APLP1 CHCHD2 MSMO1 PLD3 LDB2 PCBP1 CFL1 CDK14 BEX4 SEPT4 CDKN2D CHEK1 BAD ENO1 PKM GABRQ TPD52 STXBP1 PFDN1 KCNV1 ISCU GCH1 RHEB PIN1 AES ARL1 ASAP1 RP11-20I23.1 VAMP2 PET100 COX7A2 NTN4 PNPLA5 KIFAP3 CDK17 TMEM65 ATP6V1B2 VWA5A FAM131C GRM3 HNRNPH2 VDAC3 KCNIP1 PLIN3 LMBR1 CHL1 ARF1 TMEM120A BAI2 CKB C2ORF80 REEP2 CERS6 HINT1 SYN2 NDUFB10 CDH8 RAPGEF5 ADD2 BTBD1 TOMM7 MAP1LC3A MT3 HILPDA TOMM34 RPL11 CRIM1 NDUFA12 NAP1L3 ATP6V0C MAPK8IP2 COMMD6 ATP6V1G2 GABARAP ANKRD18A SERF2 ARF5 TUBB3 NUDT4 MGST3 MIF RPL36A GTF2H2C_2 TUBB PCDHA10 PCDHA9 PCDHA4 PCDHAC1\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "cortical layer 5-6 excitatory neuron" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: SNAP25 KIFAP3 RAB3B CHN1 BASP1 CCDC183 GAPDH NUAK1 RAPGEF5 TOMM20 MTPN PPP3CA MT-CO1 MT-CO2 PHYHIPL LZTS1 SLC9A6 STMN3 ITPR2 NELL2 CX3CL1 FAM127A SMYD2 MAP2K2 RP11-531F16.3 CTSD MAP1LC3A SYNJ1 RPL7 FAM3C MAP2K4 NR4A2 DPYSL2 UBE2M TUBA1B PLCB1 GSKIP RPL17P50 AP3S1 GABRA1 CAMK2G MGST1 PPP3CB GFRA2 PSMC3 DCTN1 HOPX SERINC3 SUB1 TNS1 ETV5 NEFL CALM1 TMEM191A FIBCD1 CALN1 MARCKS ACLY RP11-111M22.2 ASAP2 PI4KA SLITRK1 GRIN1 CFL1 WASF1 WIPF1 ENO2 NAP1L3 NFIA PTPRN GDI1 SCAMP5 CAMK2D ATP5G1 COMMD6 KLHDC3 SV2B MAPK1 RPH3A ATXN10 IRS4 DGAT2 YAF2 NPTN HSP90AB1 C18ORF61 ATP5I NEUROD2 RPS28 FBXO2 ADSS ATPAF1 MAP1B SCN3B UTRN TPI1 CIAPIN1 PDP1 SLC22A17 ACP1 PRKACB CETN2 WSB2 WARS TLE4 LMBRD2 ESCO2 NUDT4 IDS ATP6V0C RP11-20I23.1 APOLD1 DNAJC21 TBC1D15\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "cortical layer 5-6 excitatory neuron" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: CHN1 SYTL2 RAB3B RP11-111M22.2 ZNF385D SNAP25 BIRC5 NFIA TLE4 NRCAM ARFGAP2 SYT1 ITPR2 CALM3 STXBP1 THY1 MORF4L1 RXFP1 GRIN2A GDA SCN3B PRKCB ARPP19 PCDH17 GPM6A STMN1 DCLK1 LMBRD2 TXN KCNF1 VAMP2 COL11A1 RPS4X CALM1 SLC6A1 PGAM1 OCIAD1 SARAF RPL6 GABRA1 LPPR4 RPL13 MTRNR2L1 CPE NRF1 SIRPA CAMK2D OR6D1P EGFL7 PGK1 TMOD2 RASGRF1 C14ORF132 TM2D3 RPL26 CKB TMA7 KLC1 KIF21A PIK3R1 TSC22D1 SLC17A7 DIRAS2 PSAP LMO3 TMEM200C PDP1 THYN1 CTNNA3 CABP1 CFL1 DPYSL2 MT-CO2 HNRNPA1P40 PLEKHD1 SV2B PPP2R2C NNAT PKM RABAC1 ENC1 UQCR11 ITFG1 RHEB TMEM155 NPFFR2 MAP4 FKBP8 MT-ND3 LANCL1 RAP1GAP2 TEX2 RAD23B ATP5G2 RTN4 CDK14 ITM2C LAMTOR5 CDH8 MANBAL PPP3R1 PSD3 CRIP2 SUMO2 RGCC MED10 BTBD10 FAM219A AC244489.1 GRIK3 PIP4K2A SYNPO PSMA7 GRINA LL0XNC01-16G2.1 EDN1 BEX5 GDI1 PJA2 RTN3 STX1B NEUROD2 APLP2 ROBO2 BLOC1S1 TBCA SNAP91 FTH1 EGR3 PRDX5 YWHAB TMSB4X CHP1 CA11 TUBB4B MAST3 CHGB FGF12 ZNF503 WBSCR17 RAB6A RPS15 ATP1B1 INPP5F FAT3 NXPH3 C5ORF63 ENO2 SLIT3 CBX6 STMND1 AES SNN THOC7 FASN CADM2 NDUFA13 EPS15 MORF4L2 MMP24-AS1 C16ORF13 ENSA TMSB10 PI4KA SERINC1 MRAS FABP6 PEX5L IFT52 RNF11 KRT86 LINGO1 ATP1A3 MAPK1 FBXL15 ASAP1 HSP90AA1 NPTN NDUFA1 ATP5I FKBP4 NRN1 PAQR9 SELM BCAP31 TPGS2 POLR2M ATP2B2 KIF1A AAMDC RPL13A DUSP6 VSNL1 C1ORF233 ID2 RPL36AP21 AHNAK2 PACSIN1 PGM2L1 NCALD NSF PBX3 SAP18 STMN3 ZFAND5 ATP6V0B PIN1 RPL11 HS6ST2 COX4I1 EPHB6 PREPL SPARCL1 RPS28 IPCEF1 ALDOA OPCML HRK IGSF21 IMPA2 HSP90AB1 SNRNP25 STXBP6 PCDH15 CALM2 TGOLN2 TSKU ATP6V0D1 PFDN4 YWHAZ SNCA DPY30 CDC37 SSBP3 PEBP1 UCHL1 COPRS OAZ1 ZBTB18 CMAS FAIM2 B3GALT2 DNAJB9 ADSS HINT1 MT3 TMEM191A ADAM23 TXNIP SLC12A5 C18ORF32 EIF4G2 SNRPN LRP1B IDS CACNB1 ACTG1 ALDH5A1 ATP1A1 GAPDH SEPW1 TCEAL7 ALPK1 TCEAL2 PLOD2 KLHDC3 MGST3 BEX4 TMEM59L NUAK1 PPP1CB CNTN1 TOMM70A PRKACB ADORA1 C19ORF53 VDAC1 STX1A FXYD7 RAPGEF5 ARSJ COL5A2 EIF4A2 CKLF NDFIP2 SLC22A17 AP2M1 PSMB3 TUBB3 RPL36A MIF CYB5R3 TBC1D15\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "cortical layer 5-6 excitatory neuron" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MT-CO3 MT-ND3 CHN1 SNAP25 MT-ND4 MT-CO1 MT-CO2 MT-ATP6 SYT1 MT-ND2 MT-CYB HSP90AA1 MT-ND1 SPARCL1 IDS CALM2 PNMA2 DKK3 CLU RPL41 RPS15 CALM1 VSNL1 TBC1D15 UCHL1 SYTL2 MAP1B CLSTN2 BASP1 PREPL ITM2B TSPYL1 RTN3 EIF4A2 TUBA1B RTN4 HSP90AB1 SYT11 SCD5 DYNLL1 GPM6A TMA7 INPP5F ACTB PLP1 VAMP2 CPE NECAB1 DPYSL2 NPTX1 YWHAG STXBP1 RTN1 YWHAB MTRNR2L1 GRIN2A GAPDH KLC1 MTRNR2L12 ACTG1 SKP1 RPL21 JUND RPL37A SERINC1 RPL13 NRGN STMN2 PRKCB ENO2 FTH1 SARAF SCN3B PIK3R1 TMSB4X OR6D1P CNTN1 DIRAS2 FAIM2 ENC1 CADM2 RAN STMN1 CTSD RAB3B ATP1B1 TERF2IP EIF1 MT-ND5 HMP19 TMEM130 CKB APP NGFRAP1 TLE4 PPP3CA APLP1 FKBP8 NDUFS5 PLCB1 MORF4L1 SLC22A17 ATP2B4 PLD3 TSPAN7 CLSTN1 SPOCK1 RPL13A PDP1 WASF1 TPPP SNCA RHBDD2 THY1 PSAP USP5 PGK1 MTATP6P1 MORF4L2 EFR3A NEFL PEX5L PAK1 NCDN YWHAZ TUBB4A TUBA4A EIF4G2 ATP6V0E2 CALM3 ATP5C1 SLC8A2 NCALD FKBP1A RPL15 RPL17-C18ORF32 RPL10A SPOCK2 CDC42SE2 PRKAR1A TOMM20 NAPB ARL6IP1 PGRMC1 HNRNPH2 GNAQ YWHAH RPL17 SV2B TBCA SCAMP5 SNRPN SERINC3 ARL6IP5 TCEB2 NELL2 CAP2 DNAJC6 FTL GPRC5B NFE2L1 FAM134A APLP2 SSBP3 RPL32 BEX4 RPS4X SYN1 DCLK1 ATP9A HS3ST4 PGM2L1 SLC24A2 OLFM1 PKM RPL35 TBR1 TSPYL4 GDI1 RAB6B BEX1 NSF CTC-575D19.1 RP11-20I23.1 ATP6V0C RPH3A KCNK1 SYN2 TMEM59L PRKAR1B HK1 FAM3C CLDND1 SNAP91 ZBTB18 FXYD7 APBB1 QDPR HSPA8 RANBP1 EFHD2 MPPED1 PPP2R2B ZNF365 AES SCOC KIF1A KCNMB4 COX6B1 PRNP EPDR1 CLGN RPS10 NEFM RPL26 OPA1 LYSMD2 HS3ST2 TPD52 EPS15 SLIT1 NGEF GNB1 PEBP1 SLC12A5 EID1 LGI3 CRIP2 RPS5 DGUOK CADM3 ATP6AP1 TM2D3 MARCKS PNMAL2 SPTBN1 LMBRD2 NUAK1 PPDPF TMOD2 PPP2R2C LDHB RAB6A SLC17A7 PIN1 KIF5A CAPNS1 OXR1 RAP2A OAZ1 RCAN2 CYFIP2 RPS12 UBA52 NHP2L1 COX7A2 UBB BNIP3 ZFHX4 GRM3 CPLX2 WSB2 ARPP19 FXYD6 MDH1 TMEM144 KIF3C CSDE1 GTF2H2C_2 COX7A1 KCTD12 HMGCS1 ATP6AP2 ID2 EPHB6 TMSB10 JUN IDI1 TPRG1L ATRN ATP2A2 STX1B VPS35 GDA RAB11A COX7C BSN ATP1A1 SNCB ABCA8 PPP2CB RP11-111M22.2 NDUFB2 BIRC5 SYT5 PNMAL1 MFSD6 TOMM7 SRP9 PSD3 CREG2 GPX4 CDC37 MRFAP1 VDAC3 PPIA OPCML INA OLA1 ATP6V1B2 ARF1 COX6C PTMA RPL12 YWHAQ AP2S1 CHGB MAP4 RPL3 RPL6 DNAJA1 DDAH1 ARFGAP2 C19ORF53 ATP5B CDK17 KIF21A RPL23A STMN4 AP3S1 TLN2 COL5A2 LMO3 NAP1L2 RLIM COQ10B MAP2K1 NDUFB5 PRUNE2 ERH GHITM RRM2B LINGO1 GCHFR NDN SEC61G NEUROD2 LDB2 NMNAT2 ITM2C PDE1A LUZP2 SAMM50 C11ORF31 NAP1L3 C12ORF57 ATP6V0B FBXL16 PCMT1 HPRT1 DRAP1 KCNA1 RASGRP1 S100A6 GRINA GPIHBP1 ACOT7 C14ORF132 PRDX3 IFT52 AP2B1 TMEM151A NDUFB3 SEZ6L2 TOMM70A NUDT21 C1ORF95 CREB5 FAM131B PSMC1 TMX4 RAB3IP ANXA6 MMD TOMM34 CRKL MLF2 GABARAPL2 CDK14 UROD CLTA ATP1A3 REPS2 B3GALT2 SEMA5A TUBB4B SNN TMEM63A CYB5R3 TPT1 DPY19L1 MDH2 DNAJC5 SH3GL2 LRP1B MAP7D2 CHP1 LANCL1 CD99L2 C14ORF2 RAB4A RASSF8 TCEAL2 TOMM22 TUBA1A ATP5A1 TGOLN2 LL0XNC01-16G2.1 PGAM1 NDRG3 MTPN PTGES3 UBC NEGR1 RAPGEF5 AP2M1 NDUFB1 RPS27A HTRA1 CHMP4B SLC39A10 SLC38A1 PRDM8 GUK1 ANLN NDUFA5 LAGE3 PCDH17 SDCBP NDUFA12 COX8A ACOT4 ATP6V1G1 RPL36A HSPB8 SEMA3A ASAP2 LAMTOR5 FOXP2 ARPC5L STK39 PEG10 PFN2 ALDOC NDFIP2 MIR6723 STMN3 TAGLN3 PIP4K2A QKI CISD1 ATXN10 GABARAPL1 SLC25A11 FLOT2 OAT ENSA GMFB RPL31 ATP5F1 SULF1 ZMAT2 CLTC FEZF2 ATP2B2 NRCAM ZFAND5 DNER HSPA4 CAPZB ATP5G1 RHEB PPA1 CRIM1 PHYHIP PHYHIPL FABP3 ARL8A DCTN1 CA11 C4ORF3 TMEM70 CHCHD2 NDRG4 PITPNA LPPR4 MTCH1 RHOB CABP1 FGF12 PRDX5 PPP2R4 UBL5 WBP2 CXXC4 C1QBP SLITRK1 IDH3A UBE2V2 MAPRE2 MAPK8IP2 DNM3 CLIP2 PPM1A COPRS OCIAD1 RFK SCN1A SLC25A4 CYCS C9ORF16 ISOC1 MTRNR2L8 TUBB2A PHPT1 PPP2R1A SYT4 EDIL3 CRYM CSRP2 ABHD8 PRIM1 NCBP2-AS2 POMP SERP2 STRAP ANKRD20A11P BAD RUNX2 CNP SNAPC5 CLIP3 SUMO2 COX7B TP53I11 ITFG1 DPP6 SYT13 SYNGR1 PTPRN CBX6 PNMA1 EGR1 MAST3 PFKP TSPAN18 LDOC1L RSL24D1 PMEPA1 UHMK1 UBE2D2 WIPF1 VDAC2 NHP2 SLC25A22 DLC1 PSMD12 EGFL7 MT3 CAMK2N2 COX17 SLC9A6 MAGEH1 BANF1 KCNAB2 SULF2 EHD3 PRKACB CFL2 SUCLA2 CMAS AC010731.4 AP1S1 RRAGA MAP2K2 DNAJB6 NPTX2 CFL1 PJA2 CHMP5 NARS COX4I1 SPRYD3 NDFIP1 MAL2 CNRIP1 PPP3CB MMP24-AS1 C16ORF13 ENO1 MTRNR2L6 MAP2K4 SYNJ1 LIG1 SRM CYC1 TPGS2 NRAS SIRPA RNA5-8SP6 VDAC1 COX14 HAPLN4 COX5B RAB3C SYNPR CLPTM1 TSC22D1 ANXA7 C1ORF52 MAPK1 BAG4 LRRC53 WARS MAGED2 MTHFS MBP WDR47 PPP1CB ARL1 CAMK4 MIF RPL38 ATP5J NDUFV1 ATP5G2 ATOX1 NKX6-2 CADPS2 NGRN FAM96B LAMTOR2 ARHGAP6 BIRC3 NRN1 CDKN2D MRPS21 ZFP36L1 GAP43 NAA38 IPCEF1 RNF11 PRPS1 MYL12B ATP6V1E1 CDK5R2 SLC1A2 B3GNT1 MRPL37 GABRA1 NDUFB8 RPS6 AHNAK2 MSMO1 UQCR10 PDGFRA CAMK2G EIF1AX SPCS2 EVI2A SERF2 ALDOA RNASEK-C17ORF49 ATP6V1G2 RP11-219A15.1 PCDHGA6 PCDHGA10 PCDHGA5 BSCL2\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "cortical layer 5-6 excitatory neuron" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MT-CO3 CHN1 SYT1 SNAP25 MT-CO1 MT-ND4 MT-CO2 PRKCB CALM2 GPM6A RTN1 MT-ATP6 NRGN MT-ND3 ATP2B2 VAMP2 SLC24A2 PRNP ITM2B PJA2 MAP1B TSPYL1 MT-ND2 APP SEZ6L ACTG1 ENC1 MT-ND1 NDRG4 SLC1A2 NFIA MTRNR2L1 KLC1 PGM2L1 THY1 RTN4 BEX1 EIF4A2 STMN2 TSC22D1 YWHAZ NRCAM NDFIP1 DIRAS2 DKK3 CALM1 APLP1 NR4A2 SCN3B GRIN2A ATP1B1 NDFIP2 MTPN CLSTN1 PCDH17 DYNLL1 LPPR4 SEPW1 TLE4 STXBP1 TSPAN7 ATP2A2 CPE HSP90AB1 OXR1 RTN3 SCAMP5 PRKACB TMEM59L YWHAG CX3CL1 SARAF GABRA1 MTATP6P1 SYTL2 PET100 SNAP91 PEBP1 YWHAH SERPINI1 NGFRAP1 SPARCL1 NGEF CAMK2D TUBB2A BASP1 LMBRD2 ATP9A TSPYL4 SV2B PPP3CA SH3GL2 RAPGEF5 SNRPN COX5B RPS28 TBR1 ZFAND5 NPTN TAC1 PSD3 TOMM20 MAPK1 BEX2 SYN2 KIF1A NPTX1 SLC17A7 VSNL1 DCLK1 RGS4 TUBA4A STMN1 CLU ACTB CDK5R1 MTRNR2L6 TESPA1 ATP6V0C UBE2QL1 PSAP SUMO3 CERS6 NELL2 ARPP19 FAIM2 ASAP1 CADM2 CCT5 ITPR2 ELAVL4 SSBP3 ATP5B OAZ1 PKM CFL1 ATP6V0E2 HMP19 RFK PIK3R1 BSCL2 TCEAL7 CAMK2N2 RAB3A RP11-20I23.1 SRP14 TUBA1B SUMO2 LINGO1 MAP4 IDS RASGRP1 RPL41 CDC42SE2 SKP1 FSCN1 FGF12 PLCB1 CDK14 RAP1GAP2 ATP2B4 AK5 STMN3 PNMAL2 KLHL5 MTRNR2L12 EGR1 PPP2R2C PRKAR1B ATP6V1B2 ARL6IP5 FAM198B REEP5 PDP1 WASF1 RAB3B PCDHGA5 CTBP1 TBCA ATOX1 CAP2 CREG2 TMSB4X NXPH3 ARL8A GDA ZBTB18 EHD3 C14ORF2 GNAQ VWC2L NEUROD2 ADIRF COPS8 ATRN RNF208 TSPYL5 SLITRK1 DLC1 CEND1 CSDE1 SUB1 GTF2H2C_2 SULT4A1 TGOLN2 SEZ6L2 UCHL1 LDHB PREPL RHOB KCNF1 DPP6 RPL32 SLC25A6 ATP6AP2 INPP5F NUAK1 PAK1 DDAH1 SAP18 MDH1 EFR3A MT-CYB GABARAPL1 SPCS2 NCAM2 SLC6A17 NDUFA1 ATP6V0B RPL13A MAGED1 HOMER1 FXYD6 SERPINE2 ARL6IP1 TMEM14A RAB6A PCSK5 NR4A1 RP11-111M22.2 UHMK1 PDE1A NELL1 SCN1A UBC GRINA CDK17 NARS ATP5I CCK RAB2A RPL15 PNMA2 MT-ND4L TCEAL2 REEP2 MRAS PGAM1 GDI1 GOT1 HK1 CLIP3 DPYSL2 PRKAR1A MT-ND5 VWA5A GUK1 MAPRE2 SYN1 TCEAL5 ATP6AP1 C19ORF70 PRKCE NHP2L1 PRKCG SMIM13 NAPB CPLX2 ITFG1 OLFM1 SYNGR3 TERF2IP FTL CAPZA2 LANCL1 B3GALT2 GRIN1 MYEOV2 CDK5R2 TBC1D7 MGST3 HSP90AA1 SYNJ1 HINT1 CKB APLP2 ENSA GPR158 NUDT4 ENO2 CABP1 CHGB ETV1 CALM3 TMEM65 ERH RAB6B TCEA2 STX1A FAM3C HMGCR KCNA2 ROBO2 SNCA NREP TMEM130 TMX4 LMBR1 NR1I3 ALDOA NSF BIRC5 NGRN ARFGAP2 GAP43 DPY19L1 GFRA2 DMTN AP1S1 LGI3 IGSF21 PMEPA1 WBP2 C16ORF13 SLC38A1 HSPE1 CCDC115 NRIP3 MPC2 DNAJA1 HSPA8 YWHAQ CCDC152 RNF11 FXYD7 CPLX1 SNX3 GRPEL1 RPL38 PEF1 NAP1L3 KCNA1 UBA1 SLC39A10 AZIN1 PLD3 OCIAD1 DNER SH3RF1 KCNC2 SLC7A8 TXNDC17 REPS2 PAPPA ARHGAP35 SERF2 GOLIM4 CHCHD2 FILIP1L MGST1 HMGCS1 CYFIP2 SYNGR1 WSB2 SPDL1 DDN CPNE4 MDH2 KCNH5 NEUROD6 NPFFR2 PNKD CAMK2G RAB11A PTGES3 CAMKK2 SLC9A6 ITM2C BTBD1 STX1B RPS10 CAMK4 TMEM141 HBQ1 ATP5A1 RAB3C CLTB SLC7A5 DNAJB6 UBE2E3 ACTR1A PSMC3 PI4KA EDNRA MYL6B NEGR1 TRIM37 COX17 ATP5G3 KIFAP3 GNG2 HBA2 GABARAPL2 PSMD2 ATP6V0D1 PPP3CB KIF21A HILPDA STRAP LMO3 COL24A1 CLTC BAG4 HTR1F JUND POLR2M GYG1 TPGS2 MAP1A GRIK3 UBQLN2 ATP6V1E1 PPP2CB OPA1 LDB2 TUBB2B NDUFA4 MLLT11 SPOCK2 CADPS2 SERINC3 PHYHIP SLC25A5 LYSMD2 MAP1LC3A C20ORF24 BCAT1 ATP6V1G1 GPX4 MAPK8IP2 PARM1 ANXA7 KIF3C SRD5A1 SCOC RAP2A RPL11 EGR4 PRDX5 PTPRN SEMA3D APBB1 ADAM23 NDUFA11 ATP5F1 TMEM155 MORF4L2 DNAJB9 SOX9 CMPK1 FSTL5 KIAA1045 MARCKS NCEH1 BNIP3 GPR88 ARL8B FAM131B TPI1 PFN1 CMAS PIN1 HNRNPH2 HPRT1 TMEM151A DUSP4 NIPA1 NECAB1 CORO2B CA11 NDUFS5 OLA1 SOD1 SCD5 BCAP31 ISCU GPCPD1 PTCHD4 SELT NINJ1 PRDX2 GPR37 EIF1B FBXW11 SLIT3 RBM20 OXCT1 ADSS SYT13 RPL37A SLC22A17 ENO1 MLF2 RPL21 GABRA5 GMFB LIMK1 OPCML CD99L2 GPR132 TMEM35 SERINC1 KIF5A ARL4C WBSCR17 KLHL12 GNB1 C19ORF53 GHITM ZNF503 EPB41L3 NDRG3 ANO3 FILIP1 SYT3 PPP1R9B DNAJC4 RPL18A TRMT112 GRM3 ATP1A1 ATPAF1 HPCA CNIH3 RPL35 RARRES2 SLC38A11 CDH8 ATP5J2 LAMA4 ATXN10 PPP1R7 CCDC85B APEX2 RHEB DNM3 C2ORF80 UQCRH SUCLA2 MAPRE3 PCBP1 PCDHA4 SNCB MUM1L1 ALCAM ELMO1 ADD2 MIEN1 TUBB4A PAM COL9A1 MAST3 NAT8L SPTBN1 FABP5 B3GNT1 CBX6 CNTN1 DUSP6 COX5A ISCA1 ETV5 PEG10 USMG5 SSTR2 HFM1 EIF4G2 LAP3 DNAJC6 UTRN MTX3 TPT1 TMEM230 C1ORF115 SYT11 FAM43B PFN2 POLR2J AP2S1 PPP1CB PPP2R1A TUBA1A FABP3 RAB40B ABHD8 CDHR1 PGK1 LHFP GUCY1B3 SNN ADORA1 UROS RGS12 LINC00116 DYNC1I1 FLOT2 EIF1 NAP1L2 TOLLIP ASB13 RPL26 MAP7D2 HTR2A AP2M1 FKBP1A PPIA CCND1 HIGD1A CNTNAP5 SUSD4 TPRG1L WLS COX6B1 ATP6V1A MZT1 SCG2 SUMO1 NMNAT2 GOT2 SEMA3C KCTD12 BEX4 CAB39 FAM43A SLC25A11 TLR5 TBCB YWHAB NDUFB10 ATP5J RPL13 SDK2 GAPDH UQCRB C7ORF50 DYNLT3 SH3BGRL3 ATP6V1G2 AC244489.1 CFH RPL17 RPL17-C18ORF32 TUBB RPL6 C11ORF31 MBOAT7 C1D MIF TF TBC1D15\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "cortical layer 5-6 excitatory neuron" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: SNAP25 MT-CO1 TSPAN7 RTN1 MTRNR2L1 SYT1 MT-CO2 CALM1 GPM6A MTRNR2L12 MT-ND4 SLC24A2 MTRNR2L8 RTN4 ATP2A2 ACTB MT-ND1 ATP1B1 SNRPN CPLX2 DIRAS2 EIF4A2 RTN3 TMX4 MT-CO3 PPIA ATP1A3 MTRNR2L6 DCLK1 EFHD2 CFH PTMA KCNIP1 APLP1 TAGLN3 APP PPP3CA KIF21A NAP1L3 SNCA CALM2 TPT1 VAMP2 CEND1 SERINC1 IQSEC1 RGS4 FAIM2 PCP4 MAPRE2 ADD2 RPL41 ARHGAP35 UQCRQ TERF2IP COPG1 CFL1 PRKAR1B PGM2L1 STX1A UQCRH MFN2 ZFAND5 PIK3R1 GAPDH OAZ1 C1ORF95 BASP1 ZBTB18 RPL10A HINT1 SARAF SV2B PPP2R2B TLE4 PSMD8 PRKCB PLCXD2 PEX5L PNMA2 CLSTN1 SUCLA2 ETV5 DNM3 MARCKS COX8A PCDH17 SLC22A17 KCNAB1 DPP6 LMBR1 ETV1 GNAQ SPOCK1 IMMP1L CAMK4 INPP5F PACSIN1 RBX1 RPL26L1 ARF3 RPL35 GDI1 USMG5 SERPINI1 NDFIP1 GRM3 SPTBN1 COX6C STXBP1 DNAJB6 DYNLL2 NEGR1 PCDHA4 TLL1 TRHDE NREP CITED2 GABARAPL1 UBL5 RPL7 EPB41L3 SUMO1 NAP1L2 CDK14 WASF1 RPL31 PEBP1 KAL1 SYT13 MT-ND2 COX7C NDRG4 YWHAG ITM2C LRP1B CDH13 MAPK1 TIMP2 DNAJC6 GABRA5 SCN1A SH3BGRL3 PRKACB TUBB2A FXYD6 NXPH2 ALCAM DNAJC21 TF ZNF385D SMYD2 CHRM2 ATP2B2 ATP5H PRKCG ROBO3 D4S234E MTCH1 CACNB1 DKK3 PTPRN2 ATP6AP1 HSPA4 TUBA1A TOMM7 WASL LDB2 TMSB10 RPL37A GUCY1B3 HPRT1 THY1 CLU ITFG1 RAB37 NCAM2 CABP1 NPTXR FOXP2 CAP2 GLIPR1 PNMA1 ETS2 RPL32 YWHAZ TLN2 LDHB TMA7 NUDT21 SYNPR UCHL1 LYNX1 RNF11 HSPA8 IGFBP6 KLC1 PSMC1 FEZF2 CYCS MT-CYB MTG1 PCSK1N KIF5A C12ORF49 PI4KA GHITM TMSB4X KCNH5 TMEM130 NUTF2 BEX4 SEPT4 IPCEF1 STMN3 FTL LZTS1 SIRPA CHL1 PHYHIPL ARHGAP29 SNX10 PPP2CA BCAP31 HPCA UQCRC2 CDK5R1 GRIN1 IDS DPY30 CALCRL TPPP PNKD PBX3 ENC1 LINC00087 NDFIP2 PLCB1 DLC1 CDK5R2 RP11-632C17__A.1 CPLX1 GDE1 CDC42SE2 OPCML PPP2R4 CPE ATP6AP2 NDUFB8 BCL11B RAB5C RPL8 SLC38A1 DNAJA1 RAP2A EPHB6 SKP1 APLP2 SULT4A1 TUBB4A PFKP EPS15 CSDE1 WARS VAMP1 PSMC3 RPL15 TOMM34 SELT NRGN ATP6V1C1 KCNK1 C16ORF13 SCN3B NXPH3 RAB2A TMEM151A ISCU LUZP2 PRNP DLX1 COA3 PPP2CB NRN1 ATP5E HDAC1 PTGER3 SPRN SLC6A17 PSMD12 HMGCR MAGED1 VWA5A VSNL1 ARL6IP1 SLC1A2 YWHAB VDAC1 SUB1 FAM127A TSHZ2 BNIP3 TMEM35 NCOA4 FABP7 NGFRAP1 NDRG3 ATP1B2 KCTD12 HMGCS1 SH3RF1 DPYSL2 RAB3C POMP CAPZA2 TCEB1 ALDH5A1 SKAP2 PPP2R1A NECAB1 PKM RP11-345J4.4 PAFAH1B2 FAM86EP KIFAP3 INA CDS1 RHOB FAM131B C1ORF52 WLS CAMK2N2 STUB1 AK5 RAB1A MT-ATP6 CRIM1 ACTG1 PJA2 WBP11 GPRC5B SEC61G PTPRM PVRL1 KRTCAP3 LHFPL3 NDUFB3 PDZD11 SCG2 CKB KCNF1 PRKCE DPY19L1 TXN BIRC5 NMNAT2 COL11A1 SLC12A5 GRIN2A CADM3 AP3S1 PELI3 ATP6V0E2 YWHAH HOPX UQCR10 STX1B QDPR BANF1 PSAP UBC TUBA4A ASB13 GSTT1 STMN2 SRM GYG1 ANO3 TPI1 C1QBP TMOD2 UQCRB TUBA1B CLDND1 HOMER1 TCEAL2 ARL2BP SEPW1 SLC17A7 MORF4L1 RFK GABRA1 ATP5A1 MAGEH1 GPX4 STMN1 RPL12 PARM1 P2RX6P ADAM23 UBE2V2 EIF5A2 GUK1 SEZ6L2 HTR2A HSP90AB1 GOT1 VDAC3 C1ORF115 TMEM155 PIN1 SYN2 NDUFB11 CRYM MAP1B MAP2K1 FTH1 UBA52 RAB3A FASN SPOCK2 RPS4X ARPP19 SOD1 B3GALT2 MRPL47 ASAP2 GLRA2 PPP1CB BEX1 PELI2 NSF ZMAT2 NAPB PGK1 FGF12 SPARCL1 BSG SEZ6 HSP90AA1 SCD5 BTBD1 RPRM TPD52 CHI3L1 HNRNPA1P40 TUBB3 ALDOA C11ORF31 OR6D1P RPS15 ARF5 GABARAP RPL21 RPL13A RPS3A PCDHGA6 PCDHGA10 PCDHGA5 TBC1D15\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "cortical layer 5-6 excitatory neuron" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: SNAP25 RAB3B MT-CO1 CHN1 BIRC5 TUBA1B ZNF385D NR1I3 RP11-111M22.2 CLU MT-ND2 TMSB10 DPYSL2 MT-ND4 PRKCB MT-CYB LMO4 SYTL2 CALM1 USMG5 SYT1 CALM2 MT-ND3 OR6D1P GAPDH TMSB4X GRIN2A UQCRH SPARCL1 TUBA1A RPL39 NDUFA13 RPL26 STX1A HOMER1 MAP1B ATP1B1 PLCB1 LAMTOR5 NECAB1 SIRPA EIF4A2 MT-CO3 STMN2 TSPAN7 KIF21A MT-ATP6 THY1 HNRNPA1P40 YWHAB BAI2 TOMM20 SEPW1 PET100 EPDR1 FXYD7 YWHAH STXBP1 NDFIP1 SLC17A7 ATP6AP2 SLC9A6 BCAP31 RPS26 SYNJ1 LINC01296 ATP6V1E1 ATP5F1 SNCA RPL41 OAZ1 FXYD6 RPL6 UCHL1 GPM6A TOMM7 NPTX1 CTSD TMX4 GUK1 SCAMP5 ENC1 MTPN RTN4R UBB COX7A1 RTN4 BEX2 ENO2 KCNC2 NGFRAP1 PFN2 SCOC TMEM59L CPE SULT4A1 AP2M1 PRKAR1B LYNX1 MT-ND1 CFL1 IDS GDI1 ELMO1 GAP43 PNMA2 BSCL2 TAGLN3 MT-CO2 ATP6V0C SUB1 ATP1A1 ACTR10 RPL35 COX7C RP11-20I23.1 CA11 NRGN RTN3 VAMP2 AP1S1 RPL7 CCK CFH PGK1 CHGB GGT5 FAM219A ATP5I TUBD1 CALM3 NREP GDA HIGD1A TUBA4A USP5 SMYD2 YWHAG DYNLL1 SNAP91 TENM1 MRPS21 MORF4L2 SARAF LMBRD2 ATP6V1A LMO3 PIN1 LCNL1 SSBP3 EIF4G2 SNX10 NFE2L1 AP2S1 GNG2 CREG2 UBC DMTN ATP1A3 ANGPT2 PPP2R1A SPCS2 GHITM COX6C PRELID1 PLP1 DDN PAFAH1B2 BNIP3 FTL DDAH1 CABYR FTH1 RTBDN NDUFS5 NAT8L APLP2 RLIM SNX3 GPX3 TMSB4XP4 PLCXD2 C14ORF2 APBB1 CAMK2D PPP2R2C TLL1 UBL4A WSB2 HSPB8 VDAC1 SEMA3C FASN RXFP1 TOX2 KIF1A SUMO2 PNKD CDK5R1 MFN2 TPT1 ACOT7 TMOD2 BLOC1S1 ATP5A1 EDF1 ATP5J2 CAB39 PRNP SPATA13 CKB PSMA7 TOLLIP NNAT CSDE1 NDUFA1 CDK5R2 RPL15 PAK1 RPL13A TBR1 PDLIM5 TCEAL2 RELN NAP1L5 BTNL9 RELL2 OPA1 SLC7A8 EFHD2 PRKAR1A DCLK1 TCEAL7 NMNAT2 ATP5G1 MLF2 MAP1A ACTR6 CXXC4 NDRG4 OLA1 CLIP3 RPL31 OR2X1P SUSD4 ELAVL2 LL0XNC01-16G2.1 SERPINE2 KRAS PDZRN4 COL11A1 KLC1 ESYT1 KCNAB1 TRPV2 CLSTN1 MAP1LC3A TSPYL4 NFIA CDS1 PCYT2 NEUROD6 TMEM70 KCNC3 OCIAD1 HK1 LAMA4 AP1S2 PSD3 FAM96B RPS5 RPL7P49 DKK3 YWHAZ OXR1 ROBO2 KCNAB2 CLTA PPP2R4 COL9A3 PPIA RAB27B HTR4 MAP4 SYT4 NAPB MAP2K4 NDUFB5 LINGO1 EIF1 NDUFB2 VGF B3GALT2 RPS15 OLFM1 CACNA2D2 NGEF TMEM150C SLC12A5 OPCML NRCAM COX17 RPL23A SNRPN RTN1 VPS35 SEPT4 RPL13 C16ORF93 TMEM179B COX7A2 SCN3B SMS MARCKS PHYHIP HTR2A NDUFAB1 AHNAK2 ACTB PLAUR ADD2 COX7A2L INSIG1 C11ORF31 RPL21 CADM2 ATP9A SERINC1 PKM TRAPPC1 NHP2L1 HPRT1 ATP5J PCSK1 RPL38 ACTG1 ZNF350 NPTX2 CLDND1 PEF1 NRN1 CST3 KIAA1045 PJA2 SEPT1 ATP6V1C1 REEP5 SRD5A1 CMPK1 CABP1 COX14 CACNG3 TM6SF1 SLC6A17 C9ORF16 MAPK1 YIPF1 SYNPR NDFIP2 CADM3 PITHD1 PRKACB DCTN3 STMN1 CIAPIN1 TUBB4A NDUFV1 PCMT1 MTRNR2L12 GNAQ CPLX1 NARS SLC38A1 PCDHGA6 ANKRD18A IMMP1L RPL32 RASGRP1 GUCY1A3 HBA1 KIF5A CACNB1 ISCU SV2B ETS2 WBP2 DHCR24 VSNL1 PSMB5 ELAVL4 TMTC1 NELL1 PCSK1N UBE2D2 LRRIQ1 PEBP1 CHRM2 ARF5 TEX2 TNS1 RPL36A PRUNE2 SYT13 NEFH CAMKK2 UQCRC2 PRSS3 DYNLRB1 AC244489.1 RPL17-C18ORF32 NGRN RNASEK-C17ORF49 PPP3R1 RPL17 B2M\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "cortical layer 5-6 excitatory neuron" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: SNAP25 MT-CO1 GPM6A MT-ND4 CALM2 MT-CO2 TBC1D15 SYT1 RTN3 MT-CO3 TSPAN7 ATP1B1 RTN1 HSP90AB1 MTRNR2L1 MT-ATP6 MT-ND3 CHN1 CPE ARPP19 DKK3 NPTX1 MT-ND1 TUBA1B RAB3B RPL36A RPL38 CALM1 MTATP6P1 APP THY1 CKB MT-ND2 NAPB EIF4A2 ATP2B2 MAP1B ATP2A2 RPL31 PPP3CA CLU PREPL SERINC3 DIRAS2 NRGN TMSB4X PGM2L1 NDFIP2 YWHAB KLC1 SCN3B ITFG1 SYN2 PRKACB RPL32 YWHAZ NEGR1 MAP2K1 PFN2 OLFM1 SERINC1 CDK5R1 PNMAL2 SLC39A10 MAST3 ATP6V1A IDS SLC17A7 LMO4 YWHAH VSNL1 TMSB10 SCD5 ATP6AP1 UQCRB SYT11 MAPK1 RPL41 PNMA2 RPL37A PIK3R1 DYNLL1 PCDH17 PJA2 NECAB1 ATP1A1 TOMM20 CNTN1 FAIM2 LMO3 NEFL SPOCK1 RPL12 RP11-111M22.2 CFH FAM127A CAP2 TLE4 RAB3A PEBP1 SNCA PPP2R1A RPL7 SLC22A17 CTBP1 ATP6V1F MTRNR2L12 LRP1B SULF1 EID1 GAP43 GABARAPL1 SPARCL1 PRKCG RPS26 PINK1 NDUFA4 PACSIN1 CADM2 ARL6IP1 SULT4A1 SLC8A2 OAZ1 PTPRN AK5 MORF4L2 TPD52 SLIT1 TMOD2 FXYD6 ITM2C ELAVL4 RAB6B NDUFS5 NDFIP1 ATP2B4 NAP1L2 DCLK1 CFL1 WDR47 CSDE1 TGOLN2 TOMM7 CDC42SE2 TENM1 RPS3A YWHAG NCALD MPC2 CLSTN1 OPCML SYT4 MORF4L1 PEX5L FIGN TMEM59L PRNP BEX1 FOXP2 TUBB4A CALM3 RAB11A ATP6V1E1 AC244489.1 MTRNR2L6 TPRG1L TSPYL5 UBE2M PHYHIP PTGES3 RPL6 GDA CLSTN2 SOD1 GUCY1B3 KIAA1045 BAI2 PRKCB WASF1 STXBP1 RPL13A STMN1 RPL8 ATP5E ETV1 STX1B DNAJC5 SIRPA MFSD6 MRPL20 HMP19 ITM2B PGRMC1 CALCRL UCHL1 ATP5B UQCRH GRIN1 SUB1 SKP1 NCDN RPS12 RPL39 MAP2K4 RP11-20I23.1 EIF1AX CDK5R2 NRN1 PPP1CB UQCR11 EDF1 ATP6V0E2 NRCAM PRDX1 COX4I1 UBB MSMO1 PDE1A BEX4 FBXL16 CTSD SYT5 FAM3C PHYHIPL ZBTB18 SEZ6L PCMT1 PSAP MTPN PPDPF TAC3 TAGLN3 PCDHGA10 VAMP2 GSTO1 PDCD5 EFHD2 OXR1 RPS28 CLDND1 RPL23A INPP5F ACTB APLP1 CYFIP2 GNAQ OLA1 ARF1 PNMAL1 CDK17 MMD SUSD4 ARF3 GNB1 RPL26 MAP1LC3B RPL11 ZFAND5 NEFM OCIAD1 RPRM DIRAS3 ADAM23 CTC-575D19.1 STMN4 BASP1 SLC12A5 PDP1 PEA15 CLTC SSBP3 SPRYD3 IPCEF1 TERF2IP ATP5O PET100 SLC1A2 GRINA IL10RA PSD3 ARPC5L PTMA TUBA4A RPL15 KLHDC3 CABP1 RPH3A PLD3 GDI1 KCNF1 SNAP91 BNIP3 GHITM GAPDH ELAVL2 NCEH1 PPIA NELL2 ACTG1 ATP6V0C SEPW1 MANBAL NDUFC2 CNR1 JUN SYNGR3 RPS6 ARL6IP5 TF ESCO2 RPL17-C18ORF32 RPL17 ATP6V1G2 ARFGAP2 CHL1 FKBP8 AP3S1 PRKCE ADSS OAT SNRNP25 STK31 TRAPPC1 UBQLN2 PAM MAP4 AES AP2M1 TRPT1 PTK2B SUCLA2 ANKRD18A NDUFB1 JAKMIP1 DRAP1 CDH8 RNF208 REPS2 MAP1LC3A ADAMTSL1 EPS15 ATP9A THEMIS2 UBE2E3 VAT1L HINT1 SUMO2 MT-ND4L PAQR9 SOX4 TUBD1 ATP5J DNAJA1 MTX3 PPP3CB NFIA ATP6V1B2 BAG4 HRK MPPED1 ACTR10 FILIP1L PITHD1 MTCH1 RAP2A RAB2A DYNLL2 TMX4 RSPO3 BEX2 CMAS SSTR2 COX7C FKBP4 RPS10 FAM84A ZMAT2 KIT PCDHA9 MLLT11 TMEM147 COX14 UROD PPP2CB ARL1 REEP2 TMEM120A RNF11 MAP2K2 SLC9A1 RGS12 CPLX2 HOMER1 CAMK4 PRUNE2 WSB2 NDUFAF3 INSIG1 IGSF21 NDUFB3 HS3ST4 TIMP2 SCAMP5 COPS7A PNPLA5 GOT2 SARAF RTN4 ENC1 ANXA7 PANX1 SNCB NGEF TCEAL3 C18ORF32 TBCB KIF5A GPATCH4 RPS27A IMMP1L GNG3 IQSEC1 DDAH1 NDRG4 APLP2 TMEM191A RPL13 BCAP31 PI4KA NUDT13 SRD5A1 UBA1 DEXI DYNC1I1 CDK14 ANAPC11 GMFB SMYD2 PNMA1 SYNGR1 SLC9A6 LMBRD2 AC011043.1 UBE2QL1 CA11 TMA7 PELI3 NDRG3 SERP2 B3GNT1 SLITRK1 DNM3 GABRA1 PPP3R1 PPP2R2B KCNH5 SRP14 NPTN LRMP CDC37 LRRC59 WBP11 SPDL1 CETN2 TSPYL4 MRVI1 ERH NCOA4 PSMC5 NPTXR DYNLT3 CTNNB1 TOX SRP9 SNX3 LSM4 NEK7 ENOPH1 NFE2L1 MAPK8IP2 PAK1 USMG5 ATP1A3 SQLE C2ORF80 DPYSL2 ABHD14A MAGED1 ETS2 BCKDK PHB KIF21A FASN NGRN ENO2 VDAC3 LDOC1 TPT1 SYN1 FTH1 TLN2 EPHB6 KLF10 VAPB SH3RF1 SRM FKBP1A MME RAB1A TOMM70A EFR3A LINGO1 STMN2 PTPRN2 STX1A PHPT1 CDKN2D DNAJC6 CRIP2 CIAPIN1 FABP5 DIRAS1 NNAT METTL7A PTGER3 RPL35 FAM219A CYP26A1 PRKAR1B TMEM130 CD59 EPB41L3 FARSA FEZF2 NAP1L3 MRAS MRPL51 IDI1 LINC00086 NDUFB7 C9ORF16 TCEB2 ENO1 YJEFN3 INA SH3GL2 ARL8A PTPRS ATOX1 ELMO1 KCNAB2 ATP6V1C1 RPS4X RCAN2 CAMK2D DHCR24 CAPZB ANO3 PKM MAPRE3 PPP1R7 RAB40B RAP1GDS1 ASAP2 MT-CYB CCDC85B SEC61G SYT6 BSG PID1 SLC6A17 MYO16 PPM1A GPX3 TSC22D1 DACH1 SNN PGAM1 CX3CL1 KCNK1 CYP26B1 SNRPE ATP5A1 PFKP GPX4 PTPN20A FAM134A TMEM230 MYRIP CNTNAP3 FILIP1 RGS4 RASGRP1 MAL2 HN1 CAMK2G SEMA3C YAF2 CAPNS1 DNAJB6 HSP90AA1 NRF1 SAP18 NUDT4 CD63 BTBD1 ALDOC TOLLIP WASL SV2B BTBD10 COPG1 PGM5 HNRNPH2 CACNG3 CMPK1 GJD2 NDUFA12 CAV1 TXNDC17 CEND1 SLC7A8 RAB3IP NXPH3 MRPS28 RRAGA ATP6AP2 TCEB1 MRFAP1 BAALC TNFAIP8L3 UQCR10 C1ORF95 UHMK1 TSPYL1 CHGB SDHAF1 MAGEL2 C16ORF13 ETFB MTRNR2L8 C19ORF10 NCAM2 PLCB1 CLPSL1 NREP SERPINE2 TGM2 SNX17 RP11-195F19.5 SNRPN GPR158 NRSN2 COL5A3 RRM2B ABHD8 GRIK3 PEG10 ALDOA RPL3 GABARAP RNASEK-C17ORF49 RPL18A MBOAT7 CYB5R3\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "cortical layer 5-6 excitatory neuron" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: RAB3B OR6D1P ZNF385D PSAP ESCO2 IPCEF1 CALM3 NDFIP1 RTN3 HNRNPA1P40 SNAP25 CDK5 ATP2A2 COL24A1 THY1 ATP6V1B2 PRNP PHYHIPL DKK3 TAGLN3 MAP1B NEGR1 GABRA1 CYCS RTN4 RPS28 UBA1 CX3CL1 ATP9A FAM219A PPP3CA TLE4 PCDHA4 ATP1B1 APP HSP90AB1 NRGN DPYSL2 DGKG PPP1CB CAMKK2 MT-CO1 PSD3 TESPA1 REEP2 SLC24A2 RGS4 SEPW1 PCDH17 IGSF21 KRAS ATP5J2 SERF2 SYTL2 NR1I3 PFN2 SNRPN MPI MT3 HOMER1 OXCT1 PLCB1 SMIM13 ETV5 COX7A2L CLTC C6ORF1 SEC61G STUB1 NDUFAF3 SPOCK2 RAB27B NEFM PPIA FRMD4B AHNAK2 CHN1 NGFRAP1 CYFIP2 DYNLL1 BCL11B EIF4G2 UQCRC2 GUK1 NXPH2 NDUFB10 SLIT1 RPS12 HS3ST4 FIGN CCDC124 SLC25A5 FAM84A RASGRF1 PLOD2 AP3S1 PEX5L BAALC CFH PPP2R1A SYT11 LRP1B ATP6V0E2 TTC23L CLPTM1 SCD5 HNRNPH2 VSNL1 GDI1 SPARCL1 MT-CO3 TM2D3 ENC1 SLC25A22 VAMP2 FIBP CAMK2D CLTB LMO4 GRIN2A CAMK2G RPL3 CLSTN1 C19ORF70 MRPL55 MAPK1 PLP1 GPM6A TUBA4A NSF NUDT21 PITPNA TUBA1B SYT4 SPON2 PRKACB RGS12 STMN2 FKBP1A PREPL SEMA5A CEND1 STXBP1 DNAJA1 FAT3 IFI6 HMGCR CLIP3 LUZP2 SEMA3A SLC17A7 SCN3B CPLX2 MAGED1 MT-ND4L ASAP2 PRKCB NDRG3 NDUFB7 STMN4 CLU MAGED2 SERPINE2 PPIH NAPB CLSTN2 ARPP19 PPP2R4 PNMAL1 TM6SF1 SULT4A1 PNKD HK1 COX6A1 UBB ASAP1 ADAM23 KCNK1 FNDC4 MTG1 ATP6V0B AK5 CALCRL CPE SKP1 RPL37A CAMK4 NCDN RAB6A WDR47 FOXP2 FBXO2 TUBB4B RPL31 INPP5F MAP1A RPL26 RHEB PLAC8L1 SYT1 ARSJ RPS3A ATP5I OXR1 EPB41L3 PEBP1 RPH3A GPR126 CALM2 RPS15 NFIA C1ORF115 WASF1 GOLIM4 SOX4 UBE2N SLC39A10 NDRG4 MDH1 PAFAH1B2 RAB11A COL12A1 COX7A1 FTH1 BEX1 MT-ND4 PRDX2 C16ORF93 SRP14 PSMD2 ANKRD18A PTPRN2 NDUFS5 SV2B NRAS SERINC3 SOD1 EIF4A2 MAPRE2 CARTPT NR4A1 RTN1 RPL12 PDE1A RPS2 ACTB NUDT4 HBA1 HBA2 RP11-20I23.1 RPL41 ATP6V0C RPL13A AC244489.1\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "cortical layer 5-6 excitatory neuron" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MT-CO1 MT-CO3 RAB3B MT-CO2 SNAP25 MT-CYB MT-ND1 MT-ND3 TBC1D15 MT-ND2 MT-ND4 CHN1 MAP1B CALM1 RPL31 MT-ATP6 THY1 MTRNR2L1 RP11-111M22.2 RTN4 SYTL2 PLD3 RPL41 PEX5L SYT1 GRIN1 CABP1 FTH1 APP TF RPS4X CALM2 RPL32 SMS LMO4 BEX2 CREG2 HSP90AB1 PHYHIP RPL38 CTNNA2 PFN2 NECAB1 YWHAZ RTN3 RPL35 GDI1 MTRNR2L12 PIK3R1 GSKIP CCK SEZ6L2 SNX10 ATP9A TSPYL1 KRT17P6 SYPL1 RPS3A CLU APLP1 CKB FBXL16 IDS PRKCB DCLK1 ATPAF1 RPS28 UHMK1 CHMP4B PDP1 PREPL OCIAD1 NAPB CAPZA2 SLC9A6 ENC1 FAIM2 FSCN1 CDK14 ATP1A1 PI4KA PRRX1 UQCRC2 NDUFB5 MRPL51 SLC24A2 PNMAL1 TUBA4A PSAP LIMK1 PPIA SH3BGRL2 TMSB10 RNF11 NDUFB8 ATP1B1 RTN1 CFH MTRNR2L6 HNRNPA1P40 ARFGAP2 PRKAR1A WASF1 NDUFB3 KCNK1 KLC1 RPL7 ATP5G1 PPP2R2B SYT4 STK39 CXCL14 ACTG1 RGS4 KCNAB2 RPS15 ARPC4 NGFRAP1 ARHGDIG ANKDD1B CAPZB ATP5F1 CADM2 C1QBP NREP ARL8A COX7A2L C7ORF50 RPS5 SCN1B ENSA PHB SERPINE2 YWHAB PNKD FAM131B ACTB CX3CL1 IPCEF1 DIRAS1 RPL3 RPL12 PPP3CA FKBP1A GDA SLC35B1 MGST3 BMP8A SCN3B ATP2A2 OXR1 CRIP2 RPS26 PTK2B RRAGA ATP2B2 GUK1 PET100 SCN2B SNN SEMA3A MAGED2 TPI1 NDUFA11 MAP1LC3B YWHAH ARF1 EIF1AX SLC6A13 LRP1B DRAP1 ARF3 FAM19A1 ETV1 NCDN RAB2A DGKG AP2S1 TSPAN7 KIFAP3 STX1A PJA2 TMEM59L CAMK2G RPL23A GRIN2A OPA1 C16ORF13 GSTT1 FXYD6 POLR2J MYRIP CNTNAP3 PPP2CB STK24 CFL2 SPOCK1 LDB2 NPAS3 NRN1 RAP1GAP2 ETV5 NEGR1 SLIT3 VSTM2L PRKACB PRNP LINC01296 ATP5E PPDPF REPS2 AP3S1 STMN4 KIF1A SNAP91 UBL5 CADM3 NRGN EIF4A2 AK5 RHEB SCAND1 ATP6AP1 SOD1 ANO3 TSPYL5 PPP1R9B BSG WASL MTRNR2L8 PRKAR1B RPS6 POMP NPTN LYNX1 RAB5C CYFIP2 KLHL5 DPYSL2 NBL1 NEFM UROS RPL26 TNFAIP8L3 BCAP31 SMIM13 MLF2 RAPGEF5 RPS2 C1ORF115 KRT17 PDCD5 SERINC1 NRCAM NARS BASP1 MRAS RPS12 CORO2B UBQLN2 CNTN1 CHL1 SLC39A3 LINGO1 MRPS21 EDIL3 SV2B MPP1 NFIA PNMA2 PCMT1 TUBA1B HEBP2 RPL39 NIPA1 SLC39A10 HS3ST5 ATP6V1B2 EIF1 NCEH1 VAMP2 MPPED1 RBX1 AKAP12 PKM VGF EPDR1 CIAPIN1 C14ORF2 GALK1 SLC25A11 TRIM47 TMEM155 PVRL1 MAP2K1 C19ORF53 ELAVL2 BDNF STMN3 ZNF365 CACNG3 ITM2B RLIM CAMKK2 CYCS CLSTN1 MAPK1 CPLX2 SSTR2 CALM3 UCHL1 SCN1A PTGES3 YAF2 RPL18A OLFM1 RSPO3 SNRPN RP11-219A15.1 ATP6V0C RP11-20I23.1 MYOM2 NDUFA13 OR6D1P PFKP ZNF385D AC244489.1 PCDHGA5 PCDHGA10 PCDHGA6\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "cortical layer 5-6 excitatory neuron" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: SNAP25 MT-CO1 NFIA SYT1 YWHAG PRKCB RAB6A CABP1 FKBP1A PFDN4 BAI2 GPM6A CHN1 LMBRD2 ACTG1 SCN1A MT-CO3 DYNLRB1 KLC1 NDRG4 ARFGAP2 PCBP1 NUAK1 ATP2B2 ITM2B TOMM7 NDFIP1 OPN3 RASGEF1B COL6A1 NDUFB7 EPHB6 CNR1 STMN2 CDH13 PINK1 KIF5A UQCR11 YWHAZ RP11-111M22.2 ADCYAP1 MTX3 AZIN1 LYSMD2 TIMP3 NECAB1 WASF1 NDFIP2 MAP7D2 ETV5 SLC8A2 TUBD1 BSN ATP1B1 NPTX1 TSPYL4 EFR3A PGAM1 TSC22D4 CLU NRCAM FIGN TRIM37 RPL31 DNAJC6 CD14 CHGB QKI CHMP5 ANGPT2 ARPP19 CAMK2G DPP6 HCN1 LANCL1 RPL35 ROBO2 RANBP1 TUBA1B BAALC PPP2R2C DNAJA1 YAF2 MT-CO2 EGR4 SLC24A2 PKM MAP1B WSB2 NDUFB1 SYNJ1 OCIAD1 PPP3CA HPRT1 CCK SCN3B MTRNR2L12 UQCRB PRKACB COX4I1 TUBB4B CDK14 GNAQ CMAS SLC30A3 NHP2L1 SLC17A7 ARL6IP1 TRMT112 AES MT3 NGFRAP1 RPL37A MT-ND4 HSP90AA1 FAIM2 VAMP2 NEFM TMEM258 YWHAB SERPINF1 CALM2 PGK1 NRGN ATP6V1B2 MAP2K4 SUMO3 LGALS1 MAL2 PEX5L MRAS NPTN HTR2A DKK3 ENSA SLC12A5 SV2B PGRMC1 PIN1 GNB1 MPPED1 TMEM59L COPRS RPL11 GABPB1 PLCB1 PCMT1 PEBP1 STXBP1 PTPRS RGS4 HN1 PPIA ENO2 SALL2 ATP6AP2 PTK2B CNIH3 UQCR10 MT-ND1 ATP6V0B NAPB NCAM2 EGR3 TENM1 PSMC1 HMGCR PSAP KCNC2 RTN1 SSTR2 TRIM36 SERPINE2 MT-ND3 ATP5A1 ARHGDIA PEG10 MTND2P28 IDS ATP6V0C RP11-20I23.1 MT-ND2 MTRNR2L6 ATP6V1G2 GTF2H2C_2 BIRC5\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "cortical layer 5-6 excitatory neuron" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MT-CO2 SNAP25 MT-CO1 MT-ND4 CALM1 MT-CO3 SYT1 GPM6A NDRG4 TUBA1B TSPAN7 THY1 MT-ATP6 SLC22A17 LANCL1 ENO2 SMAP2 SCN3B CLU RAB6B PREPL NPTN ATP5I SPARCL1 TSPYL1 STXBP1 PRNP MAP2K1 RTN3 CPLX2 PSAP ARFGAP2 CADM2 EFHD2 TSPYL4 PPM1A ATP2B4 ATP2B2 NPTX1 TM2D3 ANKRD18A C14ORF2 MAP1B PPP3CA SERINC1 GRIN2A PJA2 TMEM147 CYCS SV2B SERF2 PHYHIP RPS6 ENC1 GUCY1B3 CCDC124 LMO4 CALM2 PPP1CB NDFIP1 CPE NAPB MANBAL ACTB RPL41 HSP90AB1 FTH1 NECAB1 RPL26 VAMP2 ATP1B1 MTRNR2L1 HSP90AA1 RTN4 RAD23B CHMP4B YWHAG STMN1 CNTN1 SOD1 WASF1 YWHAZ RTN1 KIF5A MT-ND1 AP2B1 TOMM20 MT-ND5 NGFRAP1 TMOD2 IDS ESCO2 RAB3B SYTL2 SKAP2 GRIN1 FOXP2 CAMKK2 JUN CAMK2G OCIAD1 RAB3A ANKRD26P3 RPL37A TF MT-CYB COL5A2 WBP2 LINC00086 SERINC3 DNAJB6 SEPW1 SRP14 TMEM14A D4S234E PCDHB10 TUBD1 ATP6V1B2 ARL8B PNMAL2 UBL5 ARPP19 PAFAH1B2 LINC00087 BEX1 MAP1LC3B TMSB4X BASP1 APLP1 NEFL NHP2L1 ARL1 RPH3A PCDHA4 PRELID1 PRKCB CAP2 MYL6 ELAVL4 FXYD7 NELL2 FBXL16 SYT11 DNER MTX3 CD59 ITM2C ROBO2 ANXA6 PFN1 SUMO2 SNCB MAPRE2 LAMTOR2 UBL4A CALM3 SLC8A2 PPP1R42 UQCRQ NDUFA5 PPP1R14A TUBA4A PIK3R1 MAPK1 SNCA ARL4D TMSB10 AES SYNJ1 RPL13A INSIG1 SYN2 TBR1 GRIK3 OR6D1P SQLE KIF1A CABP1 RPL38 FAM3C ETV5 RGS4 MARCKS TGOLN2 MED10 EIF1B STX1A YWHAQ DMTN ALKBH1 EPB41L3 SPTBN1 PSD3 CRYM PTPRZ1 ACLY KIF21A DYNC1I1 NCALD KCNA1 ATP6AP1 DCTN1 RAB1A DIRAS2 BSCL2 HMGCR RAB5C PRKAR1B TLE4 TM6SF1 FILIP1 MLLT11 MTRNR2L12 SYNGR3 TPPP PEA15 NRGN WASL MTCH1 ETV1 RAB3C SCG2 NRCAM RASGRF2 CX3CL1 SMS ITM2B RLIM GNAQ PGD PKM CCDC25 EIF1AX PPP2CB SYT6 MT-ND3 FXYD6 TMEM35 NDUFB10 NDUFA1 PPP2CA PSMD8 EFR3A ASAP1 ARL8A CLSTN1 PEBP1 MAP1LC3A PTK2B PTPRN CAPZA2 MTATP6P1 COPS7A SSTR2 TXNIP COX7A2L VAMP1 STX1B DCLK1 CLSTN2 CTBP1 CADM3 CLTC RPL7 POMP ETFB NAPA SNX10 PNMA2 NDUFB8 YWHAB NDFIP2 OXR1 SPOCK1 MRPL20 NCEH1 INPP5F ATP1A1 RAB27B SPOCK2 MRAS CREG2 SOSTDC1 PAK1 MAPRE3 ATP6V0E2 TPI1 NPTX2 C12ORF57 CDK5R1 MDGA1 SULT4A1 SH3GL2 SCAMP5 WLS LPPR4 PRKCE PLCB1 SARAF COL11A1 EIF4A2 RP11-111M22.2 ATP6AP2 SIRPA EID1 LAMTOR1 PLD3 ELMO1 FGF12 PRKACB NSF RP11-20I23.1 ATP6V0C MTRNR2L6 RP11-219A15.1 AC244489.1 GPR98 PCDHGA5 PCDHGA6 PCDHGA10\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "cortical layer 5-6 excitatory neuron" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: CHN1 RAB3B SNAP25 RP11-111M22.2 SYT1 CREG2 ZNF385D TUBD1 NDRG4 MAP1B CLU ATP1B1 BIRC5 HOMER1 PCDH17 PRKCE EIF1 RTN3 ITM2B NRGN RPS27A PSD3 RTN1 ENC1 CKB ATP6V1F SYT11 TMSB10 SYTL2 ATP5J2 OLR1 CTNNA2 MTCH1 UBE2V2 NDUFB1 AP1S1 FGF12 TESPA1 ATP1A1 PRNP SNCA NUAK1 SLC17A7 PGM2L1 OXR1 UCHL1 IFI6 CYFIP2 APLP1 RPS28 RTN4 RAB3A ABHD8 CCK MAST3 PRKACB RPS15 SYNGR1 IDS ATP2B2 SARAF GAP43 DPYSL2 CD63 STXBP1 PLD3 MYL6 GRIN2A ARPP19 MDH1 S100A6 PPP3CA COL24A1 OR6D1P AP2M1 OLFM1 IGFBP5 SERF2 NAPB ATP5I RPL31 SYNPO CLPTM1 PFN2 NECAB1 LMO4 RAB3C BAALC CLSTN2 SKP1 TGOLN2 NPTXR CYB5R3 CALM1 NAT8L OTOA EGR3 BCL11B NREP PEBP1 NBL1 GNG3 FKBP1B PI4KA DCLK1 DYNC1I1 ACTG1 EFHD2 PIK3R1 COX17 RPS4X NDUFB2 TSPAN7 EIF4A2 MORF4L2 RAB40B RPL38 IPCEF1 BSG NDUFC2 RPL26 PFN1 UBL5 VAMP2 GABARAPL1 FXYD7 RPL39 RPL11 EPB41L3 SOD1 PCP4 PKM SUCLA2 YWHAZ MRPL20 SUMO2 FAM134A TPT1 PRDX2 CA10 NRCAM EIF4G2 SELT SNRNP25 CFL1 ATP5A1 KIFAP3 REEP2 DCTN1 NRN1 ASNA1 RPL13 NGFRAP1 BLOC1S1 RORB UQCRH ARF3 MAGEH1 TRAPPC1 PAM CAPZB YAE1D1 YWHAH LGI3 QDPR CLSTN1 RAB6B SLC39A10 CX3CL1 SPARCL1 CABP1 KLF10 GRIN1 GPM6A SLC25A6 SH3GL2 CAPNS1 NFE2L1 C4ORF3 BEX4 RGS12 COX7C SYT4 RAPGEF5 UQCRFS1 TOMM7 GNAQ RPL15 ASAP2 SEZ6L2 SSTR2 MAP2K4 RPH3A FAM19A1 PTPRN ATP2B4 KCNAB1 PSMA7 EIF1AX SCN3B LANCL1 B3GALT2 TSC22D1 RPS12 VDAC3 THEMIS2 SNN CAMK4 TMA7 CRTAC1 BEX5 GSK3A SIRPA CMAS TMEM130 VDAC1 AQP4 IQSEC1 PPIA RPL10A SPCS2 TMSB4X PAK1 CDS1 ENO2 ELMO1 GDI1 RXFP1 NDFIP1 ACTB CDK5R1 SEPW1 KIF21A ETV5 ACTR1A OPN3 TOMM20 NDFIP2 PVRL1 PNKD SNCB MLF2 KLHL12 HSPA4 APLP2 CARTPT NGEF CADM2 TBR1 STMN3 CPLX2 DPY30 MED10 TALDO1 UQCR11 SCN1B MTX3 CCDC154 CLTC INPP5F ARL2BP DYNLT3 ATP5E HAPLN4 PPP3CB NEFL RASGRF2 SLC12A5 CHL1 CALM3 STMN1 CTNND2 LAMTOR2 CDC37 CAPZA2 TCEB1 OAZ1 DDN YWHAG FTH1 ARHGDIG RPL12 NPTX1 CLIP3 SERPINE2 BASP1 SCD ATP5F1 ATP6V0E2 HTR1F TUBB4A FAIM2 USMG5 UBA1 NAPA WBP11 ITFG1 HPRT1 FIS1 PCBP1 EPDR1 MT-ND2 C1D PRDX1 ASAP1 PPP1CB MANBAL TUSC2 ATP2A2 STMN2 PNMAL1 PRKCB DNAJB6 CAB39 MAGED2 ATP6V0C GPR98 NGRN RP11-20I23.1 NSF GABARAP AC244489.1 NR1I3\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "cortical layer 5-6 excitatory neuron" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MT-CO3 MT-ND4 MT-CO1 MT-ND1 MT-ND3 MT-ATP6 MT-CO2 MT-CYB MTRNR2L12 MT-ND2 MTRNR2L1 MT-ND5 TBC1D15 PPP3CA SNAP25 SYT1 MAP1B MTRNR2L8 RTN3 RPL39 RP11-219A15.1 IDS SYTL2 RAB3B BIRC5 RPL31 TUBB4A ARPP19 RGS12 OAT YWHAB PRKCE SAMM50 GPM6A PRKCB TOMM20 MMD RASSF3 BSN PLCB1 CLU CABP1 TMEM150C NDUFB5 HMP19 ATP1B1 UCHL1 SCN1A CHN1 OXR1 THY1 MTND1P23 TMEM151A PSMD12 ENC1 CAMK2G SERPINE2 SPOCK2 GRIK1 NEFL GRIN1 STMN1 EIF1AX DYNLL2 SEMA3A MAST3 ARL8A CLDND1 SUB1 INA KIF21A TSPYL1 ZBTB18 PLCD1 IGF1 CADM2 ADAM23 BEX1 EXTL2 TUBB2A SCD5 NAT8L PROX1 ACTB PPP1CB SPARCL1 LMO4 SIRPA NDUFA5 SLC39A10 ATP6V0E2 ITM2B BSCL2 CD63 ERH PPP3CB NMNAT2 PTMA TSPYL4 FAM162B CCDC184 MAFB DPF3 CBX6 LSM4 PFDN1 TSPYL5 CTBP1 CERS6 MAP1A PPARGC1A CTNNA2 GUCY1B3 TP53I11 NPTX1 DOCK10 NUAK1 MZT1 FBXL15 VSNL1 CFH TMEM191A PTK2B VAMP2 PIK3R1 NDRG4 OLFM1 CXCL14 ELAVL4 HSPA8 OPN3 STMN3 CALM1 CAP2 SULT4A1 RPL13A PPP1R9B GBE1 RGS4 IL6R HTR2A EIF4G2 GAPDH MAP2K4 NELL1 EIF1 PTN RNF11 GNG3 LIMK1 NFIA SLC22A17 PNKP PREPL SYNGR3 SCN1B TMTC4 DYNLL1 TAC3 FAM84A HSP90AB1 RELN TPI1 FXYD6 IGFBP5 NEGR1 BRK1 CNTN1 ARL4C SOCS3 ATP5H RPS15 SCAMP5 LMO3 NELL2 RTN1 PDE1A GRIN2A EFHD2 OCIAD1 ANXA7 BANF1 CHL1 KCNAB3 RPL38 GLRA3 PACSIN1 RAP2A ATP1B2 PHYHIP CLSTN1 NDFIP1 SLC7A8 ALK SLITRK1 OR6D1P CEND1 CCK GOT1 NTN4 MGST3 FAM131C HOMER1 ATP6V0C RP11-111M22.2 BNIP3 RPL18A SERF2 RP11-20I23.1 MTRNR2L6 AC244489.1 PCDHGA5 PCDHGA6 PCDHGA10 ZNF385D\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "cortical layer 5-6 excitatory neuron" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MT2A IFITM3 RPS28 ADAMTS9 CD59 RPL41 SLC2A1 EPAS1 PTMA APOLD1 TSC22D1 MT1X UBC ADIRF PLOD2 ATP1A2 SLCO4A1 DPYSL2 EIF1 MTRNR2L1 PTGDS VIM ATP1A1 COX4I2 LLGL2 NOTCH3 CPE TGM2 ETS1 TMSB10 GGT5 TUBB4B IFI44L YWHAG PRKCB RTN4 CLDN5 RARRES2 RNF144B PPP2CB HIGD1B RPL7 B2M RPL13A VDAC3 SLC7A5 CALM2 SLC19A1 MTRNR2L12 DNAJB6 SLC25A6 FAM127A CST3 TIMP1 TUBA1B MTATP6P1 LGALS1 MAP1B PDP1 POLR2I NCOA4 RPS6 RP11-632C17__A.1 MT1E TCEB1 SPOCK2 MTFP1 DYNLRB1 SLC39A10 ITM2C MAF UQCR10 COPE PAK1 PRKAR1A PSMC3 YWHAZ VSTM2A RPL23A JUNB ELOVL7 NID1 NDUFC1 BNIP3 BLOC1S1 IFI16 SERF2 TPT1 MT-ATP6 WWTR1 GPX4 ATP5J NDRG2 ITM2A MORF4L1 ARL8B BST2 IFI27 MTRNR2L6 CYB5R3 MFGE8 MT-ND1 ZBTB20 NDFIP2 EGFL7 ATP10A EDNRA BSG CMPK1 ATP5G2 ENG COX7A1 FAM189A2 RHOC IPCEF1 MT-CO2 SLC6A12 FAM96B TIMP3 PRKAR1B CP ARHGAP29 YWHAB NUTF2 IFITM2 TOMM70A APBB1 CALM3 NDUFA13 FTL GSTP1 CAMK2G NOS3 YWHAH MT1F PRDX5 ATP5E VDAC1 SAMD9L RREB1 JUND PEA15 LZTS1 RPS2 PECAM1 GADD45GIP1 C10ORF54 KLC1 ESYT1 CD63 CDK17 COL6A2 PTN TMEM88 RAB1A TMSB4X PGAM1 RPS3A RLIM CNP PSAP MT-ND4 ATOH8 COX17 ETS2 GJA1 IGF2 MT-ND4L KIFAP3 PLEKHA4 ATP1B2 PPIA NFE2L1 SEPW1 RPL13 SMIM3 ITM2B PLAC9 KLHL5 AHNAK GPM6A CYCS RPS4X EDF1 SLC22A17 NCAM2 CA2 C10ORF10 MIF CHMP4B SNAP25 MAPK1 PDGFRB NDUFB7 INSIG1 ICAM2 MT-CO3 BCL6 COX6A1 POLR2K ITPR2 CRIP2 COX7C LEF1 CRYM FIS1 TGFBR2 NAA38 EBF4 TM4SF1 TBCA GABARAP RPL17 IDS RPL17-C18ORF32 RPS26 RPL36A BIRC5 SYTL2 ESCO2 RAB3B ZNF385D PCDHGA10 PCDHGA5 PCDHGA6\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "endothelial cell" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MT2A MT1E TMSB10 APOLD1 MTRNR2L1 MTRNR2L12 RPL13A RPS15 MT1L C10ORF10 EPAS1 MT1X MTRNR2L8 UBC MT-CO3 CASP4 MT-CO1 RPS28 SDPR FLT1 RPL37A TGM2 CALM1 TUBB4B SLC2A1 ZCCHC24 RPL36A PRDX5 CDKN1A B2M MT-ND2 MTRNR2L6 TMSB4X HSP90AA1 RPS6 SRGN POLR2L MT1M IFITM3 RPL23A DCLK1 ARHGAP29 MT1F YBX3 HLA-B AHNAK CSDE1 VIM COX7C SAP18 MT-ND1 CTC-575D19.1 MT-CO2 MAP4 BSG STXBP1 IFITM2 TM4SF1 PTMA SMIM3 SLCO4A1 YWHAB RPL31 CORO1B CHN1 BCAP31 RPL26 GHITM CP ID1 SLC7A5 PLSCR1 MT-ATP6 STOM ADAMTS9 SKP1 SNCA RPL8 CA4 C19ORF43 NOP10 MTND1P23 DLL4 RPL38 PLS3 PDCD5 GPX4 FKBP1A NDUFB2 OST4 AP2S1 ICAM2 GDE1 GPR56 MT-ND4 SNCB MYL6 GGT5 ADIRF LRRC32 MORF4L1 PTN ITM2A STMN1 RPL32 TNS1 VAMP2 COX6A1 OLFM1 SH3BGRL3 COX7A2 ZFP36 FTL SPTBN1 NEGR1 MT-ND3 RHBDD2 RPS12 SERF2 YWHAH ATP1A2 SERINC3 NDRG2 CLDN5 ELOVL7 RPS26 CLIC4 S100A10 NUTF2 PON2 C1ORF64 RTN1 CHGB ESCO2 RHEB TCEA2 MDH1 PLIN2 HPRT1 MT1G A2M MTATP6P1 OSMR SDCBP UCHL1 MARCKS RHOA SPARC STC2 MRPL33 TMA7 ATOX1 CMPK1 RGCC MYO1B COX5B TUBA1B NDUFB7 SELM GRAMD3 RABAC1 ENO1 TMTC1 PPP1CB PVRL2 CDH5 PRDM1 TUBB2A PODXL IFI6 RPL21 COX4I1 NRGN SPARCL1 ATP5I COA3 CTNNB1 ZFAND5 COX7A1 HEG1 GFAP PPIA RPL35 RAB6B SYT1 PFDN4 TEAD4 GADD45GIP1 IGFBP7 DISC1 SNRPN JUND CDK17 ACTB DCTN3 RPS3A NGRN RPL17 RPL17-C18ORF32 C20ORF24 IFITM1 ATP6V1G2 TF ZNF385D SYTL2 RAB3B\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "endothelial cell" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MT2A TMSB10 MT1X MT1E MT-CO3 IFITM3 MT1M MT-ND3 MT-ND4 MT-CO1 IFITM1 GAPDH RPL41 PTMA TMSB4X RPS28 EIF4A2 ACTB CHN1 CALM2 HIGD1B SPARCL1 ACTG1 SNAP25 CALM1 RPL32 MT-CO2 MT-ND1 RPL21 RGS5 ENO2 RAB3B FTH1 RPL13A PTN LGALS1 SELM DPYSL2 YWHAZ BASP1 FTL BSG MYL6 RPS27A RPS2 MT1F COX6A1 TMA7 MTRNR2L1 MT1L EIF1B YBX3 VEGFA MORF4L1 CPE DNAJB6 B2M RPL13 SLC22A17 NRGN SEPW1 NDUFB10 PSMA7 PFN1 PSD3 CLTA SYT1 NDUFA1 APOLD1 DUSP6 GPX1 NDFIP2 CD59 PRKAR1A RPS15 PRDX2 MT-ND2 TCEB1 COX6B1 NDUFS5 CAPZA2 RAPGEF5 RPS26 FKBP1A S100A10 MPC2 STK39 TSC22D1 SIRPA SERF2 ATP1B1 AURKAIP1 REEP5 EDF1 TBX2 PPP2R4 VAMP2 GRAMD3 RPL18A VAMP5 RPL11 RHOA CTBP1 HSP90AA1 LHFP MAPKAPK2 IFITM2 CCDC124 AMIGO2 ENG HSP90AB1 ATP6AP2 SUMO2 NBL1 ARL6IP1 PLD3 GUK1 KIF21A GPX4 NDUFA12 PPP2CB IFI16 BGN GNAQ PPM1A MTATP6P1 PGAM1 EID1 RPL8 SLC7A5 CA11 ATG101 CSDE1 RANBP1 TUBB2B NAP1L2 RPS4X CDS1 TCEAL2 NDFIP1 NDUFA13 CAMK2D SDCBP UBL5 RORB SLC39A10 SH3BGRL3 ARHGAP29 PPP3R1 RPL23A PDE3A PDE1C CFL1 SLC1A3 ATP6V1A RTN1 COX17 EZR EIF1AX PCMT1 SLC25A6 PON2 PHPT1 C10ORF10 EIF1 BCAP31 MTCH1 COX7C CLIC4 PMP2 GSTT1 TPD52 PSMC1 PEA15 RAB11FIP5 TRIB2 PRDX1 RNF181 ENC1 ARHGDIA PRKCE SEZ6L UBA1 DLC1 RPS3A IPCEF1 COX7A1 RPS6 CLTC COL1A2 GPM6A CRIP2 C4ORF3 TRMT112 PPP2R2C NDUFA2 SNX10 STMN1 OLFM1 SPARC COX7B STMN2 S1PR1 BSN MTRNR2L12 PCDH18 PTGES3 ADSS RAN NID1 ARL8B TUBA1B ANXA6 SUB1 ABCA8 MT-ATP6 CLTB ATP5E GOT1 COX4I1 OAZ1 SERP2 RAB7A ATP5J RAB34 RPL38 DCLK1 TUBA1A OAT LAMTOR1 TPT1 TMEM59L PLCB1 ATP5I AP2M1 MTUS1 VSTM2L NDUFB2 PITHD1 TERF2IP PLEKHG1 TMSB4XP4 CDK5R1 LBH PPP3CA PRKCB COL6A1 MTX3 ATP1A2 NR4A1 HSPE1 NDUFC1 GRM8 EDNRA GDI1 RTN4 ATP5O ACTR10 TAGLN3 ITM2C HSPA2 CAP2 SRGN COX7A2 VIM WARS H2AFZ NDUFA5 NEFM SLC9A1 ACLY FIBP ATOX1 RPL26 IL4R LAGE3 WDR47 RAB6B C14ORF2 COX5B SERINC3 UCHL1 BANF1 RPL12 GPCPD1 RPL7 SAP18 ATP2B2 PDLIM5 BTBD10 MAP1LC3B AKAP12 ZCCHC12 ALDOA CMPK1 GABRE MYL12B POLR2L PEBP1 BEX1 DYNLT3 RPL37A MT3 RHOB PLAC9 LZTS1 TANC1 STMN3 MT-ND5 HMP19 SV2B MRAS TCEB2 FKBP8 LANCL1 MAPK1 PPIA DCC TUBB4B IQSEC1 CAMKK2 MGST3 A2M LMO3 CLDND1 NPY TXNIP RPL3 BLOC1S1 DCN CDH13 PGK1 RAB3C UQCRH NFIA ITFG1 PTPRZ1 SMIM3 RPS19BP1 COX6C GGT5 HK1 RPS10 GPR133 PAM MIF TUBB3 BSCL2 RPL17-C18ORF32 DYNLRB1 CFH RPL17 IDS ATP6V1G2 TUBB\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "endothelial cell" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MT2A TMSB10 JUNB C11ORF96 MT1X TMSB4X GAPDH MT1L MT-ND4 EPAS1 CDKN1A GUK1 FLT1 ZCCHC24 XAF1 IFITM3 SPARC PTMA RHOB RPL13A MT-CO1 EIF1 TUBA1B MT-CO3 MT-CYB YBX3 RPL41 GNG11 ADAMTS1 SPARCL1 SLCO4A1 IFITM2 RPL12 EGFL7 ADAMTS9 CRIP2 PODXL UQCR11 RPL18A RPL13 SPTBN1 VIM MT1E COL6A2 ACTB UBC FTL MT-ND2 CTSD SMAD6 NDUFA4L2 ATP5E TSC22D1 SLC7A5 PRKAR1A MTUS1 RPL37A RPL11 MTRNR2L1 CDH5 BGN CPE TMEM147 IL4R NEK7 SNAP25 PFN1 SERF2 TM4SF1 CRIM1 ARF3 ATP1A2 RAB11A BSG MTRNR2L12 MT-ATP6 FTH1 COX5B GSTP1 ANGPT2 RPS28 MT-ND4L PECAM1 RPL17 NDUFA11 TAGLN2 RGS5 S100A16 PLSCR1 LEF1 A2M ELTD1 EMCN EMP1 CALM2 SLC19A1 YWHAB PTGES3 POMP TCEAL2 CAMK2D DUSP1 CFL1 RNASE1 SLC38A11 ETS1 MT-CO2 DPYSL2 SRGN UQCRQ PRDM1 ITM2A CAPZB CD63 RAN DYNLL1 MRPL52 PKM COX17 RPL23A MT1M S100A10 ATP5A1 ELOVL7 RPL17-C18ORF32 COBLL1 NOTCH3 GPX4 MTRNR2L6 DNAJC21 ISCU TUBA1A PTPRM SNRPE RRM2B RPS27A THSD7A EZR RAPGEF5 SOCS3 CCDC85B IFI6 MT1F CD59 RHOC CLIC4 MAP1B DNAJC6 LRP2 MT1G RCAN2 STOM ATP1A1 ITGA6 HIC1 TRAPPC1 NPY AHNAK RPL32 CAB39 MARCKS RPS15 ZBTB20 SERINC1 ICAM2 ENO1 TIMP3 CD9 BLOC1S1 CLDN5 SDPR MRPL47 PPP3CA PITPNA TM2D3 ENG NDUFS5 GDI1 SMIM12 ID1 NDUFC1 TRIL KCTD12 RHOJ HBA2 PAM ATXN10 IGFBP7 FKBP8 SELM ITM2B TUBB4B COX6C STRAP MYL6 SLC25A5 ANXA3 MAP4 BRK1 CST3 TMEM123 HINT1 SIGIRR PGK1 NAPB C10ORF54 SKP1 ATP6V0B CLU MT1A ATP5I BST2 TANC1 HIGD1B TSPAN7 SRM YWHAQ NCDN PRX TOMM70A RPL39 PDGFRB UQCRB MAP2K4 EDN1 GPR4 RPL21 CTDSP1 USMG5 NDUFB10 RREB1 GIMAP4 ACTG1 AKAP12 ATP5B AXL NHP2 IFITM1 EPS8 OAZ1 APLP1 CISD1 YAF2 MTATP6P1 TIMP1 UQCRH PEBP1 UBA52 GPX3 AIF1L COX6A1 HES1 ACTR1A PVRL2 LAMA4 PPP3CB ENC1 POLR2I PNKP SSTR2 TCEAL7 REEP5 RAB13 PTN ATOX1 SLC2A1 TNS1 NAP1L2 PI4KA PPP1CB LRRC32 RP11-111M22.2 CYCS PRKACB SUB1 TPI1 ZMAT2 SLC1A3 HSP90AB1 SLC25A4 SLC38A3 WSB2 RPS12 TBCB ARHGAP29 CFH GPR133 SLC6A12 PRRX1 SERINC3 VAT1L NPTXR MT-ND3 C7ORF50 C10ORF10 TGM2 FAM111A CTBP1 IFI16 MFGE8 CNP HSP90AA1 COX8A TPT1 POLR3H CALM1 RPS3A POLR2L CYSTM1 UTRN FJX1 CAMKK2 GPCPD1 MYO1B KCNV1 C1QBP APOLD1 MRPL33 TSPAN4 GSTT1 TMA7 NGFRAP1 PRDX1 PPIA ALPK1 PPP2R1A EDIL3 KLF2 SPRYD3 ACTR6 GRAMD3 MORF4L1 AP2S1 VWF CBX6 ARL6IP1 COX6B1 FAM174A SLC25A6 SPOCK2 GUCY1A3 NID1 SCN1A CTC-575D19.1 CTGF GABARAP SEMA3B C19ORF33 HNRNPA1P40 AC244489.1 RPS10 ALDOA RPL36A HLA-B RAB3B SYTL2 ARFGAP2 ESCO2 ZNF385D PCDHGA5 PCDHGA6 PCDHGA10\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "endothelial cell" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MT2A TMSB10 MT1E PTMA MT1X TMSB4X IFITM1 SPTBN1 CD59 PECAM1 RPS28 RPS15 RPL13A SPARCL1 MT1M IFITM2 RPL41 FLT1 SLC2A1 CLDN5 IFITM3 EPAS1 KLHL5 RPS2 UBC DNAJB6 ACTB CDKN1A RPL8 MT1F SDPR CPE MYL12B ZBTB20 MRPS21 TIMP3 MT-ND1 UQCRB COL5A3 SERF2 DCLK1 MYL6 VDAC2 RPL38 NID1 DUSP1 FAM43A TSPAN4 ATP5B MT-CO1 GAPDH C10ORF10 ITM2C RGS5 ELTD1 POMP IL1RL1 CDH5 RGCC YBX3 HSP90AB1 MT-ND4 SLC38A11 GDI1 HIGD1B PPP2R1A HLA-B ALDOA RPS6 RPL3 ARPC5L COL6A2 STMN2 ATP5E ESYT1 HSPA4 ENC1 CA11 NFE2L1 IGF2 ICAM2 MORF4L1 SLC7A5 CFL1 CYSLTR2 A2M EGFR RPL18A NDUFB5 ERG C1QBP SLCO4A1 MTPN RPS10 RPL13 MTUS1 ENG PMEPA1 RPS27A NDUFA4L2 C12ORF49 HDAC1 TMA7 DLC1 MT-CYB ATP1A2 ELOVL7 ATP1A1 PFN1 MZT2B S100A10 CALM2 RPS19BP1 CAMK2D PRKCB S100A6 CLIC4 TCEAL7 RNF11 DCN MARCKS GJA1 TRIB2 WI2-1896O14.1 RP11-632C17__A.1 TUBA1B TMEM204 ATP5J2 S1PR1 SNAP25 MORF4L2 PAM MAPKAPK2 PCBP1 TGFBR2 ANGPT2 MT1JP OAZ1 PTPRN2 UTRN NDUFB8 DPYSL2 AES SPCS2 ITM2B SLC17A7 VWF RHOA ADAMTS9 SDCBP MT-CO3 CLTA EGFL7 HINT1 ENSA TCN2 MYO10 TMEM179B ATOX1 ENO2 TUBA1C XAF1 MT-ND4L RAB13 EID1 BCAS2 COA3 BSG ARL6IP1 MT-CO2 H2AFZ EIF4G2 EMCN RPL39 FAM19A2 AURKAIP1 FKBP1B TMEM258 ACTG1 COPE MIEN1 GPER1 B2M NXPH1 COL4A3 FAM127A UQCRC1 LEF1 RPL26 PGRMC1 CAMKK2 LCP2 RHEB SARAF IL13RA1 APOLD1 SLC7A1 PXDC1 C14ORF2 PIK3R1 RP11-111M22.2 NAA38 IL4R CLSTN1 EMP1 MAP1B CD99L2 ID1 TOMM7 PRDX5 RPL32 OSMR YAP1 NDUFAF3 PLEKHG1 C11ORF31 SYPL1 MAP1A LRRC32 NDUFB11 MT1L BHLHE40 PRKD2 SLC1A3 SPOCK2 ADAMTS1 RTN4 ANXA3 SYT13 TTN CLIC5 PKM P2RY14 NDUFB4 ST6GALNAC3 ATP5I PRDX3 CRIM1 PTN MRPL20 SELM MIF MT-ND2 NGRN RPL36A RP11-20I23.1 TUBB3 ATP6V0C MTND2P28 SYTL2 RAB3B DNAJC21 TBC1D15 ZNF385D\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "endothelial cell" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MT2A IFITM3 TMSB4X TMSB10 MT1E NDUFA4L2 GNG11 GAPDH PTMA RPS6 GABRE LGALS1 IFITM1 EIF1 IGFBP7 MT1X RPS15 CYSLTR2 DPYSL2 RPL41 RPL15 ACTB TXNIP SPARC RGS5 COX7A2 APOLD1 PTGDS RELL1 CA2 RPL6 CLDN5 RPS27A CALM1 CD59 UQCR11 ATP5E UHMK1 VAMP2 RPL18A TSC22D1 MT-ND2 NDUFS5 PPIA PSMC1 SRGN HSP90AB1 HEYL NDUFB8 SLC25A6 PRKAR1A COX7B PEBP1 TGFBR2 PROCA1 MT1L KANK3 CD63 SUMO2 RPL37A DCN RPL21 RPS28 RPL13 PLEKHG3 PPDPF TUBA1B MT-ND3 UQCR10 NAA38 COX4I1 NOTCH3 BRK1 MRPL51 YWHAH MT-CO3 COX5B PLS3 TMEM11 ZFAND5 CAMK2D HSPA2 FAM107B RP11-195F19.5 TCEB1 HSP90AA1 MT1M TSPO ARL6IP1 LRRC59 POLR2K ATP6V1G1 RPS4X EPAS1 COL6A1 GUK1 COL6A2 MTRNR2L12 PPP2R1A NDUFB7 H2AFZ PET100 RPL36A COL5A3 GNB1 ATP1A2 STC1 TSPYL1 PDGFRB ICAM2 TMA7 ISCA1 GMFG NDUFAF3 TUBB6 RPL11 GOLIM4 RHOB ATP6V1B2 RSL24D1 YWHAG DCTN3 EDNRA SCD C1ORF54 RPS2 GLUL FXYD7 COL4A3 RPL31 SLC19A1 CFH GPM6A MAP7D1 HIGD1B NHP2L1 DNAJC6 SH3BGRL3 DNAJB9 VSNL1 MCM5 CHN1 RPL13A KCNC2 WBP2 SLC6A1 PPP1R14A UBA52 S100A10 IFITM2 GSTP1 TBC1D15 ACTG1 PPP1CB IFI6 MTRNR2L1 PMEPA1 PXDC1 ZFP36 RPL7 RPL8 FRZB MAP4 PREX2 GPR4 TIMP3 GABARAPL2 MAP1LC3B NDUFB11 GNG5 COBLL1 F3 BCKDHB ZCCHC24 BEX4 GLO1 RTN3 CMAS TPT1 B2M CSDE1 AP2S1 UQCRB RNF144B TNS1 RPS5 TMEM123 COX7A1 DNAJB6 BSG PSD3 CFL1 CDC37 MRFAP1 C1ORF64 RAD23B HSPA4 RFK CHMP4B RHOC ATP5J2 COX6C RTN4 COPRS LZTS1 PRELID1 ACSL5 SYPL1 PTN EPDR1 SIRT4 ENSA TALDO1 STK39 S100A6 SMYD2 MYEOV2 PRDX5 C7ORF50 UBE2F NGFRAP1 MZT1 ITGB5 COX17 CPE STK24 RABAC1 SYT1 TOMM7 PRNP SERF2 MORF4L1 NDUFA13 NDUFB2 MT-ND4 CKB SYTL2 RAB3B ZNF385D GABARAP RNASEK-C17ORF49 RP11-20I23.1 NR1I3 ATP6V0C C11ORF31 PSMB3 ALDOA\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "endothelial cell" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MT2A TMSB10 MT1X CLDN5 MT1E FLT1 IFITM3 BSG SRGN APOLD1 RPS28 TMSB4X RPL13 ADAMTS9 B2M TM4SF1 IFITM1 MYL6 EIF1 RPL37A RPL21 MT1M SPTBN1 SLCO4A1 RPS27A SLC2A1 RGS5 RPL41 RPS6 RAB3B MT-CO2 LAMA4 AKAP12 MT-CO1 ABCB1 MT-CO3 SPOCK2 GBE1 TPT1 ADIRF GAPDH EPAS1 RPS5 PLSCR1 ACTB ARHGAP29 RPL13A DUSP6 GATA2 NOTCH1 ANGPT2 MT1F TAGLN2 CRIP2 RPS26 RPS3A RAB5C DPYSL2 PRKAR1A CCK POMP YBX3 RPL32 TSC22D1 IL6 CALM2 CDH5 CALM1 RPS2 RNASEK-C17ORF49 MTRNR2L1 FTH1 RPL26 SPARCL1 ATP1A1 TUBB6 GIMAP4 MT-ND2 NDFIP1 VWF OST4 SLC7A5 WARS STK24 REEP5 CRIM1 NEFL ADM PET100 GABRE NDUFC1 EGFL7 RPL3 TUBA1C PPP2R1A FKBP1A SIGIRR PLAUR TMEM123 SEPW1 GABARAPL1 SLCO2B1 PODXL TRIB2 TMA7 BGN NDUFA4L2 VPS35 UBC RBX1 UBA1 PFN1 NDUFB2 VAMP5 RPL7 BCKDK TIMP3 PGK1 MTUS1 MT1G CD59 FTL RPS15 RHOB MRPS21 PON2 PREPL EIF4A2 RHOC TUBA1B S100A6 SLC1A3 S1PR1 IGFBP7 PAQR8 PPP1R14A JUND RPL6 CLEC14A COX7A1 NFIA HIGD1B RGCC ITM2A TGM2 DUSP1 A2M HLA-B H2AFZ LGALS1 MFSD2A APLP2 COX7C RPL11 SNAP25 YWHAH ALDOA PARP14 CCND1 PGM2L1 EPS8 TBC1D15 WWTR1 UHMK1 DYNLT3 RAB11A COX7B UQCRB QKI ARPC5L RELN NHP2L1 SEPP1 GNG5 MT-CYB PRKD2 ZBTB20 TCEB1 MORF4L1 GNG11 CASP4 MAST3 EPS15 GPR116 SYT1 PRKCE SCD SPARC GPM6A GADD45B C12ORF57 RAB1A NDUFB1 FAM43A CDKN1A MTRNR2L6 PDE9A SNRPN MMP24-AS1 SNCB MAPK8IP2 YWHAZ GRM8 ID1 TCEAL7 PGRMC1 TLE4 UBB VEGFA ARF5 TGFB1I1 PNMA2 SYT4 SLC1A2 TOMM7 PTN ATP2A2 HSP90AA1 VIM SARAF LMO4 RPL31 FAM134A RAPGEF5 C7ORF50 RPL8 GNAQ COL4A3 PEA15 TMEM204 RAN CHCHD2 COX8A THOC7 ITM2C MBP PRDX5 MT-ND3 SLC38A11 SLC6A17 BLOC1S1 SLC7A1 MAP1B ATP1A2 OPA1 CEND1 CAPZA2 RGS12 CETN2 COX7A2L CNRIP1 ATP5I ESYT1 TPI1 PINK1 KLC2 TRMT112 CCT5 MDH1 C10ORF10 PPP3CB ATP6AP2 SYT11 MRFAP1 SLC24A1 PANX1 PVRL2 C4ORF3 SNX3 TMEM130 WSB2 CFH PCMT1 PPP3CA EML3 NCEH1 NUDT13 MANBAL CFI PPP2CA COX6C NR2F2 CPE FAM84A PDE3A TXNIP TBCA ITPR2 LDHB GNB1 AHNAK VWA1 NDUFS5 CCDC85B HSP90AB1 SLC38A5 PLEKHG1 RPL39 ANO3 SLC6A1 PPDPF PRNP DIRAS1 RNF11 STMN1 SUB1 C1ORF64 RELL1 TANC1 COPS7A GSTO1 HPRT1 THY1 SKP1 RPL15 MYCT1 TUBA4A MTPN NFE2L1 DNAJC21 ETS2 NWD2 RNASE1 YWHAG EIF1B CLU SPOCK1 MAGED2 RAP2C ATP5J2 UBA52 TUBB4A MTRNR2L12 CCDC124 POLR2J NRAS PKM MTRNR2L8 PDCD5 SLC39A10 NR1I3 PNKD ITM2B NAPB MZT2B PECAM1 ATP10A C19ORF70 NDUFB7 YWHAB TSPYL1 PDK4 GABARAPL2 CYCS NPTXR NDUFA8 DLL4 RP11-632C17__A.1 NDUFB8 IFITM2 RND3 ATP6V1G1 PJA2 HES1 GAP43 CLIC5 GDI1 PTMA TEX2 GSTP1 UQCRC1 SIPA1 FAM127A PRELID1 IL3RA NDUFA2 GAD2 ACTG1 SERF2 LZTS1 ELOVL7 THSD7A MT1L EIF1AX COX17 TUBB2A CAB39 RPL38 CPNE8 ICAM2 LHFP UQCR11 POLR2L EXTL2 PSMB3 RPL17 RPL17-C18ORF32 GABARAP MIF GTF2H2C_2 TUBB SYTL2 IFI27\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "endothelial cell" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MT2A TMSB10 MT1X CLDN5 RPS28 RPL41 MT1E MT-ND3 FLT1 ANGPT2 APOLD1 RPL13A SLC2A1 IFITM3 MT-CO3 FTL EIF1 MT-ND2 PTMA UBC MYL6 BSG TPT1 RPS5 MT-CO1 RPL26 RPL17 IFITM1 CALM1 RPL13 STOM PPIA MT-ND4 RPS6 EPAS1 MT1L B2M MT1A MT-CO2 PTN RHOC RPS27A GPX1 CORO1B YBX3 A2M EGFL7 RPL23A NDUFA1 UBA52 APP TAGLN2 RPL18A MT-CYB SNAP25 PDCD5 MTRNR2L12 RPL3 TUBA1B PTGDS TPI1 IGFBP7 COX5B COX7A1 TM4SF1 LAMA4 SRGN POMP SRP14 ARPP19 C10ORF54 ZFP36 SERF2 NDUFA13 NDUFA4L2 TNS1 CD59 TGM2 EMP1 ID1 PLSCR1 IDS MT-ND1 RPL37A IFITM2 OSMR MTUS1 ATP5E RPL36A SLC1A3 CD99 ACTB C1ORF64 RPL15 DUSP1 GAPDH MTCH1 CYB5R3 MGST3 PCDHGA6 DLL4 POLR2L GNG5 NGFRAP1 CP RPL11 COX17 CALM2 SPTBN1 HEY2 FAM3C FKBP1A SLCO4A1 GPM6A ARL6IP1 BCAP31 RPL39 RPS15 ATP5J ATP5B BTNL9 MTRNR2L8 IGF2 PFN1 PCBP1 UBA1 ATP5I PRKAR1A RHOB ITK YWHAG SPARCL1 OST4 TMSB4X S1PR1 DYNLL1 FTH1 PTRF FBXL15 MORF4L1 BANF1 TUBA1A PDGFRB PIK3R1 CABP1 PREPL ATP6V1F SOCS3 DLC1 NOTCH3 STC1 CLEC14A IL3RA JUNB SLC7A5 NDRG2 MAP1B COX7A2 PECAM1 BRK1 PRKCH MT-ATP6 RPL31 ITM2B AP2M1 SSTR2 COX6A1 RNASEK-C17ORF49 CFL1 SRP9 NDUFB10 LZTS1 TMA7 USMG5 RPL35 DSTN RARRES2 UQCRB ATP1A2 CETN2 LMO2 RELL1 CST3 IL1RL1 AKAP12 GUK1 SYTL2 RAB3B RPL21 PVRL2 GSTP1 CACNG3 NUPR1L ATP6V1G1 SEMA3G CRIP2 NDUFS6 ZNF703 MRPL55 MTRNR2L1 PARP9 ITGA6 PPP2CB ARL2BP GADD45B ARHGAP29 COL5A3 NDUFA8 HINT1 VAMP2 ELAVL2 TKT ACTR1A TUBA1C ADIRF CCM2L PRDM1 TUBB2A PPDPF ATP5G2 PDK4 CA4 SARAF UBE2E3 ISCU MAP2K2 GGT5 PAQR8 NME1 EMCN SMIM12 NFIA OPA1 SLC7A8 PRKCB CITED2 DNM3 PGD VIM DPYSL2 PAFAH1B2 SNX10 LYNX1 RPL10A PBX3 SEPP1 PITHD1 NUAK1 ODF3B PPP1R14A CCK ACTG1 EDN1 CSDE1 S100A16 PTGES3 CDR2L FKBP8 PCMT1 LAGE3 AIMP2 MYL12B RHOA C12ORF57 CD63 NACC2 DUSP6 NRGN PSMC3 CASP7 ZFAND5 MED10 LGALS3 GJA1 KCTD12 DYNLRB1 WLS PARP14 COMMD6 GRM3 CA11 ATP5G3 ISCA1 CLTA GADD45GIP1 GPER1 RAMP2 TUBB6 PGM2L1 ADTRP SLC38A11 PPP3CA CCDC85B CPE RPL32 SCAND1 RPS26 TM2D3 CTC-575D19.1 DCN LSR IFI6 PLD3 CMAHP TRIB1 PLAUR ALDH5A1 PRDX5 VWF ANAPC11 DYNLT3 SUMO2 STMN3 ARPC4 RABAC1 MORF4L2 ST6GALNAC3 NR2F2 LGALS1 CBLN4 TRAC COX7C PET100 TSPYL4 FASN PSENEN TMEM230 RAN FSCN1 HSPA8 C19ORF10 GFAP ELOVL7 SLC17A7 UQCR11 SDCBP SPARC ITM2A SSBP3 UBB NDUFB7 MRFAP1 EPS8 SLC6A13 VAPB ISG15 COX6C MT1F PPA1 PRKCE CTNNB1 HSP90AA1 CCT5 C10ORF10 POLR3H NEK7 ATP10A BGN ARHGAP6 CTBP1 LAMTOR2 RRAGA C11ORF96 CLTB NUTF2 PSMA7 FOXO1 COX4I1 CDC37 RAB6B PAK1 OLFM1 PKM POLR2M CALM3 ADAMTS1 CARD16 SYPL1 PRELID1 ABCB1 HSP90AB1 GPX4 GABARAPL1 STX1A ELTD1 COA3 COL6A2 DCLK1 DCTN3 GUCY1B3 NELL2 SYT1 EFHD2 QKI RGCC RPS19BP1 MAPK1 KLHL5 NDUFB8 NHP2 NREP CYC1 NECAB1 SELM RPS3A SERINC1 GPR116 RPL6 EDF1 PLOD2 GDI1 NDUFA11 PHKG1 MT1M ALG3 YWHAH SPSB2 ERG BLOC1S1 NR1I3 CDKN1A SH3RF1 LAMTOR5 PLAC9 SOD1 SNAP91 PPP2CA SLC6A1 FAM134A AURKAIP1 BHLHE40 MT1JP TSC22D1 FAM219A YWHAQ PXDC1 WBP2 ADSS TMEM63A COX14 NDUFB4 NRN1 ETS1 ACSL5 S100A10 ETS2 ITM2C MRPL20 SERPINF1 OPCML NOP10 UBL5 ENO2 ICAM2 DNAJB9 HIC1 PPP3CB AP2S1 SDPR SPOCK2 HLA-B CFH TUBB BSCL2 PSMC1 ALDOA GABARAP GTF2H2C_2 RPL17-C18ORF32 TBC1D15 DNAJC21\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "endothelial cell" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MT2A IFITM3 PTMA PTGDS MT1E APOLD1 MT1X CLDN5 RPS28 NDUFA4L2 TMSB10 MT-CO2 SLC2A1 TMSB4X EGFL7 FKBP1A MT1M SLC7A5 STC1 IFITM1 EPAS1 PSAP MTRNR2L1 PRKAR1A FLT1 ACTB MT-CO1 C11ORF96 CLTC CTDSP1 RPL41 FOXQ1 ITM2B RAB3B C4ORF3 MT-ND1 TCEB2 CA2 SELM RPS27A FTL COX8A ARPP19 COX4I1 RPS15 COX6C RPL35 RGS5 NOTCH3 SLC1A3 ADAMTS9 NDUFB2 SEPW1 ID1 IFITM2 ODF3B JUN BSG VEGFA C10ORF10 YBX3 SUB1 UQCRH RPL17 NDUFA8 MAPKAPK2 CP CCK GRINA COL6A1 AKAP12 RPL23A PFN1 MT-ATP6 POMP MT-CO3 ATP5E CAMK2D ID2 VWF YWHAG RPS6 XAF1 CAPNS1 OAZ1 TMEM123 MAP2K1 EPS8 TSC22D1 MTRNR2L6 TUBA1B IGF2 DPYSL2 TPI1 TM4SF1 SLCO4A1 RELL1 DUSP1 SPTBN1 ATP1A1 HSPA2 SLC39A10 TUBB4B GAPDH MT-ND2 PPP2CB HEY2 EIF4A2 RHOC MYL6 PKM NDUFA13 PLAC9 SMIM3 DYNLL1 ZFP36L1 RPL31 RNF152 UBC JUND ITM2A MAP4 TSPAN7 JUNB BCL6 FTH1 TGM2 CFL1 MYO1B RPL15 ZFAND5 RPL8 TBC1D15 MED31 RAB6A PRKCDBP SMIM12 CALM2 ATP5J2 YAF2 CRIP2 P2RY14 TAGLN2 MT1A GADD45B MLF2 AGT SLC25A4 SEC61G DGUOK SPARCL1 NAP1L5 RPL13A AZIN1 ATP1A2 S1PR1 ATP5B HIGD1B IL1RL1 SEPP1 GFAP CD58 GPX1 TPT1 ACTR1A RPS3A AURKAIP1 PECAM1 YBEY TUSC2 PVRL2 COX7C IL6 NR4A1 COBLL1 ATP6V1G1 CTSD SPOCK2 PPP1CB ACLY ZNF574 CDK14 CD63 OST4 RPL10A CRIM1 CPLX1 TM4SF18 ADAMTS1 NDUFC1 TMA7 TUBA1C C18ORF32 PREPL MRPS7 RAN MT1L UBL5 MRPL55 SKP1 RPL39 PEA15 RPL6 FOS NRCAM PBX3 SPARC PODXL CLPTM1 ADM HPCA AES HLA-B SELENBP1 HIC1 DISC1 PEBP1 ELMO1 MTATP6P1 RAMP2 VIM BTNL9 STMN1 BGN HNRNPH2 PLOD2 MTUS1 COPE FXYD6 COX7A1 POLR2J ICAM2 IFI16 TRAPPC1 AP1S2 SLC6A17 HSP90AA1 PSMD2 ATP5H BEX4 GNG5 ATP5J EIF1 PSMC3 RHEB TPD52 COL5A3 PAM MT-ND4 KLF10 YWHAB MT1JP INHBB MT1G NCDN PLCB1 SDPR S100A13 NINJ1 C19ORF10 ARHGAP29 RHOJ SYT5 MMP24-AS1 RPL12 TIMP1 DNAJB6 BHLHE40 GABARAPL1 FUNDC1 SCOC SRGN RP11-632C17__A.1 PFDN4 RAB34 PET100 ACTR10 SAP18 GNB1 STUB1 KLHL5 COX5A CTGF RPL26 RPL13 FAM134A SLC38A11 NDUFA5 MYEOV2 CYB5R3 SMIM13 CORO2B CXCL2 RARRES2 PPDPF LGALS1 SH3BGRL3 GJA1 EPB41L3 USMG5 UQCR11 SDCBP AEBP1 LRRC32 CCDC85B TLE4 CKB HILPDA NRN1 MT-ND5 PDLIM5 STRAP PSMA7 SUMO1 MIEN1 SERF2 MTPN ERG MTRNR2L12 IL4R PSMC5 TRIB1 RPL3 TNS1 TGFB1I1 COX5B RPL37A PDGFRB C7ORF50 AXL GRIN2C RPL18A MORF4L1 RP11-111M22.2 PRDX2 EDN1 FIGN GNG11 STXBP1 TGFBR2 COL6A2 UBL4A TBCA CYCS CERS6 LAMA4 H2AFZ C12ORF49 RPS2 CD9 MYL12B CD99 HSPB1 CALM1 ENO2 TMTC1 CDC37 LCP2 PTPRN AP3S1 NDUFA1 SARAF AP2M1 PARP14 TOPORS-AS1 C12ORF57 RPS4X FBXL15 RPL38 COX4I2 APP MTCH1 RPL32 NDUFB11 GABRE RAB1A EGFR BSN MIF TUBB3 NSF NR1I3 ALDOA NGRN SNRPN CD59 RPS10 GTF2H2C_2 TUBB\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "endothelial cell" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: TMSB10 MT2A RPL21 ACTB TMSB4X CYP1B1 IFITM3 RPL13 TM4SF1 MGP CLU GAPDH EIF1 RPL41 CLDN5 ADAMTS1 MT1X RPL32 S100A6 CRIP2 RPS12 CRIM1 RPL38 RPS27A IFITM1 THSD7A RPL39 USMG5 RPL37A RPL31 C10ORF10 RPL23A S1PR1 TMA7 HSPA8 A2M RPL36A NNMT PTMA HSPB1 B2M RPL3 TGM2 RPS4X TAGLN2 YBX3 LRRC32 IFITM2 C19ORF33 DUSP1 HSP90AA1 GABARAPL2 MT1E RPL18A PTX3 RPL12 TUBA1B CALM1 RPS6 CFH PDLIM1 TSC22D1 BGN WARS ARHGAP29 ELTD1 FTH1 ZFP36 EPAS1 HEG1 RAB3B RPL15 UQCRB MYCT1 IGFBP7 IL4R C14ORF2 RPS3A TXNIP RPS2 PTGS2 GNG11 UBC NARS MZT2B CYB5R3 PARP14 CD9 PECAM1 FBLN2 RELL1 SNCG RPS28 SPARCL1 TPT1 KCTD12 GNAQ HINT1 METTL7A SERF2 TUBA1A PPP3R1 NFIA ADSS RPS5 MEDAG SRGN HSP90AB1 SERPINE2 HILPDA RPL11 MORF4L1 COX5B PIP4K2A EIF4A2 CD93 SLCO4A1 MGST3 FTL HK1 C19ORF43 TOMM70A PAM MTPN NFE2L1 SRP14 PSAP FAM89A RPS10 TPRG1L RPL8 FOXO1 NDUFA2 H2AFZ GABARAP CLIC4 COMMD6 SH3RF1 EMP1 ACACB RPL10A RAB1A ZBTB18 IL33 KLC1 LINC00116 MPC2 YWHAG ENO1 MT1M RPS26 ATP6V0E2 TUBB4B NPTN MT-CO2 RBX1 PEBP1 FKBP8 PRNP RAB13 COPS8 PPP2CB PTGES3 SPTBN1 EDF1 RPL7 DPYSL2 GABARAPL1 TMEM123 STUB1 ENSA FOS HNRNPH2 BST2 SLC7A2 STOM STK24 APOL6 ETFB MAP7D1 PPA1 ANGPTL4 YWHAZ EGFL7 NDUFAF2 PGD YWHAB NAA38 RPL35 TANC1 WASF1 VSNL1 HMP19 BANF1 TCEB2 ATP5B ARF3 SH3BGRL3 ATP10A ENG NGFRAP1 DNAJB6 CALM2 POLR2L ATP5E PGRMC1 CTSD BAD ANXA1 NDUFB11 MAGED2 NRN1 VAMP5 GOT2 RAB2A ATP2A2 WASL EIF1AX CDK14 COX7A1 ATP5F1 ATP5I APP VIM PSMA7 MAGED1 COL24A1 HSPE1 COBLL1 ANAPC11 SEC61G TSPO MIF KLF2 PAQR8 STAB1 CALCRL CDKN1A RNASE1 ICAM2 COX8A RAB3A S100A13 APLP2 UBA52 RPL26 RRAGA PDCD5 ITM2B PAQR9 TPI1 ETS2 MT1L LDOC1 RREB1 OLFM1 CHMP4B MRPL12 COX6A1 CCT5 DYNLRB1 FAM198B RPL13A NDRG3 CP ACTG1 RP11-632C17__A.1 COX6B1 PPIA RPS15 CAPNS1 RPL6 VWF RABAC1 FLOT2 GDI1 WLS TGFBR2 ADIRF OST4 CDH5 PMEPA1 CTC-575D19.1 LDB2 FAM174A MTUS1 EID1 MRPL33 ATP6AP2 NDUFA1 NHP2L1 ARPC4 NGRN PET100 ALDOA HLA-B TF SNAP25\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "endothelial cell" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MT2A HBA2 RPS28 HBA1 MT1X RGS5 HIGD1B TMSB10 IFITM3 HBB TMSB4X LGALS1 IFITM2 MT-CO1 MTRNR2L1 RPL41 BSG MT-ND4 MT1E SIGIRR MT-CO3 SLC38A11 IFITM1 JUNB RPS26 C14ORF2 IGFBP7 PFN1 MT1L PTN UQCR11 TCEB2 SEPW1 RPS15 UBC ITM2B GGT5 RPL13 COL4A3 SLC6A1 COX7B EPS8 HSP90AB1 TSC22D1 NDUFA4L2 ATP6V0B EPAS1 ADAMTS9 C10ORF10 PTGDS AES AXL RPL7 COX4I1 ID1 CLDN5 RELL1 H2AFZ FAM111A RPL15 CA2 RPS6 SPTBN1 RPL37A GPR133 NR2F2 TUBA1B FLT1 BGN PI4KA CYSTM1 MT-CO2 IFI6 NFIA DLC1 CALM2 COL5A3 MT-ND2 SLC1A3 CCK RPL23A P2RY14 MT-ND3 NGFRAP1 SERF2 SPARC COX6C AGT FTH1 GDI1 MT-CYB RHOJ MT-ATP6 COX5B YWHAG POLR2M RPL8 PJA2 LANCL1 RP11-111M22.2 SLC6A12 ACSL5 STX1A CNP ACTR1A MTCH1 C19ORF43 PPIA COMMD6 CTC-575D19.1 ATP5B RPL12 USMG5 OST4 CD9 TRIP6 RSL24D1 GAPDH RPS12 ATP6AP1 SLCO1C1 NPY GPX1 LRRC32 NID1 TNS1 ALDOA ELOVL7 NDRG2 TBX18 CPE CRISPLD2 GNB1 DHCR24 COX6B1 ZNF385A PIK3R1 COX7A1 ATP5G1 RPL11 ABCB1 PRDX3 EIF1AX TMEM147 COX7A2 TGFBI ETS2 HINT1 APOLD1 MTRNR2L8 EDF1 POLR2L GCHFR ATP6V1G1 MT-ND5 AHNAK CD14 GPER1 RPL17-C18ORF32 WSB2 NHP2 CYB5R3 NOTCH3 ATP1A2 FOS MRPS21 CD59 A2M ZBTB18 SPARCL1 PSMB7 CD63 LCP2 COX14 MTRNR2L12 SAP18 TUBA1C LGALS3 CD99 MAP1B KANK3 DYNLT3 NDUFA1 RPL13A PLS3 CALM3 MAP1LC3A RPL31 ARF1 SNAP25 SYN1 PALD1 TOX2 PPP2CB PECAM1 UTRN S100A10 QDPR ATP5J PLOD2 COX7C MIEN1 TRPV2 DISC1 CAPNS1 ISG15 HEY2 RPL6 SERINC1 AP3S1 TRIB2 UQCRC1 MFGE8 PSAP HSPA2 ACTG1 FTL DKK3 PKM MBP SMIM3 CAV1 TPI1 RPS5 C16ORF13 HIGD1A ACTB RPL10A RPL17 ITGA6 NACC2 EIF1 WWTR1 INPP5F CCDC85B GPR4 POMP CSRP2 RBX1 EID1 PTMA GUCY1B3 PLAUR ADORA2B RPL21 CST3 RCAN2 ANXA6 ATP5I ARHGDIA FBXO2 TUBA1A SKP1 GAP43 RAN ATP6V1E1 CCDC184 NDUFAB1 ATP5G2 UQCRC2 OSMR GBE1 MRPL52 RPL32 ATP6V1B2 SLC25A6 DNAJC6 TBX2 MTRNR2L6 IFI27 UBB NGRN MIF DNAJC21 TBC1D15 PCDHGA5 PCDHGA10 PCDHGA6\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "endothelial cell" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MT2A HBA2 HBA1 HBB MT1X TMSB10 ADAMTS9 IFITM3 RHOB FTL CD59 RGS5 CLDN5 MT-CO2 APOLD1 LGALS1 TSC22D1 PLOD2 NDUFA4L2 PTMA RPS28 ADAMTS1 COL6A2 MT-CO3 GAPDH RPL13A AKAP12 MT-ND3 SPTBN1 SLC6A12 B2M AES MT-ND2 BSG IFITM2 SPARC MT-ATP6 RPS6 ZBTB20 STC1 CD63 RHOJ TM4SF1 NDUFA13 PPP1CB ADIRF EPAS1 DLC1 MT-ND4 PEF1 RPS2 MTRNR2L1 DRAP1 TIMP3 YBX3 EIF4G2 C19ORF43 TIMP2 SUMO2 RPL35 CALM2 CPE MTRNR2L12 MT-CO1 ATP5E GPM6A TPI1 POLR2L MT1E ICAM2 UBE2V2 YWHAB RPS26 EIF1 BLOC1S1 HINT1 NUAK1 A2M SLC2A1 RPL21 CDKN1A CA2 MRPL52 RPL26 DLD MT1M COX7A1 STK24 SERINC1 POMP RPL32 ARPC5L LINC00116 TNS1 COX4I1 NDRG2 COX5B CSDE1 ACTB CTDSP1 MYL6 ITM2B PKM PPDPF FLT1 TGM2 ATP1A1 TMSB4X GPX4 EGFL7 RP11-111M22.2 RPS15 IFITM1 UQCR11 GPR4 WWTR1 SLC7A5 IDS MIF IFI27 GABARAP RPL38 ACTR1A BHLHE40 TMA7 RPS10 TPRG1L REPS2 VWF TCEB2 SEPW1 NBL1 YWHAZ PRKCDBP RPS12 AVPR1A PITPNA ETFB USMG5 UBC MTRNR2L8 FAM19A4 TMEM59L MFN2 NAPB MARCKSL1 C18ORF21 ATP1A2 MFGE8 SLCO4A1 EFR3A COL4A3 RPL13 TTN PRKCE ITFG1 TUBB4B COBLL1 GUK1 RPL41 RHOC ARHGAP35 PLAUR SERINC3 APLP2 ATP1B2 KIF3C CYSLTR2 RPS19BP1 MT1A CALM1 RPL3 NDUFS6 ITM2C CLEC14A PPP2R1A MAP4 RNASE1 SV2B MYL12B COPE CCK DYNLRB1 EID1 GABARAPL2 LHFP EIF4A2 TUBA1B RAB11A DYNC1I1 UBA52 PRKACB UBE2N HILPDA CORO1B SNCG UBB CAPZB TRIB2 CRYM SLC39A10 NDUFB1 NEK7 MT-ND5 GSTO1 RAB5C RHBDD2 TKT TPT1 INPP5F CST3 SLC1A3 NRCAM SARAF NFIA APP GABRE ATP10A POLR2M TGFBR2 ARF1 MAP1LC3B SLC6A1 APBB1 SDCBP PPP1R14A PRDM1 ATP6V0E2 RPL18A FKBP8 FBXW11 ELTD1 C19ORF53 SNCA SIGIRR RAB7A COX6B1 TMX4 SULF2 NACC2 RLIM SPCS2 PPP2CB INSIG1 SRP9 CDK17 C11ORF96 GABARAPL1 HSP90AA1 SNRNP25 FBXO2 TOPORS-AS1 STRAP NEUROD2 TRMT112 NGFRAP1 COL6A1 PI4KA NHP2L1 CCT5 AP1S1 RTN1 NEFM NDUFB10 LAMTOR1 HIC1 ASAP2 GADD45B ZFAND5 SOD1 SELENBP1 ARHGAP29 STOM TUBA1A PAM NRGN FAM96B COX7C SELM KLHL5 TLE4 ATP5I DYNLL1 CD9 CA4 BEX4 NRN1 CYCS PSMD2 PLAC9 FTH1 SLC7A1 NDUFA1 MZT1 CCDC69 PPA1 MYO1B NOTCH3 MTRNR2L6 SYN1 IQSEC1 RPL10A COA3 STMN1 TSPAN7 THOC7 LRP4 OSMR TXNIP RPL36A ALDOA COQ10B RELL1 CERS6 RAPGEF5 ATP5G2 RPS3A TM4SF18 SH3BGRL2 TCEB1 PRKCB RARRES2 PTGDS GGT5 NDUFA2 RPL37A GBE1 KCNJ10 PIEZO1 TOMM20 COL5A3 RPL11 DIRAS2 ST6GALNAC1 SEC61G MT1F CRIP2 SNAP25 DNAJA1 COX8A SYNJ1 NDUFA12 ACLY C1ORF56 DNAJB6 PSMB3 AC244489.1 NR1I3 SYTL2 RAB3B ZNF385D ESCO2\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "endothelial cell" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MT2A TMSB10 TMSB4X ARHGAP29 IFITM3 B2M ZNF385D TNS1 APOLD1 FTH1 YBX3 ATP5E RGS5 CD59 GPR116 RPS28 RPS6 EDF1 RAB11A VWF DCLK1 SLC2A1 MTRNR2L12 RPL21 AKAP12 FKBP1A ID1 RPL32 MT-CO1 TMEM88 RPL13A SRGN TLE4 CAV1 SPTBN1 MTRNR2L1 ACTB UBA52 RPL3 A2M CCDC85B MT-CO2 EIF1 COX7A1 TM4SF1 RNF152 PRDX1 KANK3 BST2 BCKDK TUBB6 KLHL5 SPARCL1 PGM2L1 HIGD1A ABCB1 IL13RA1 SEMA5A RPL17-C18ORF32 RPL41 ELTD1 AHNAK RPL17 YWHAQ ATP1A1 SPARC SIGIRR CDH5 BEX4 NAA38 CD63 RAB4A PARP14 DYNLL1 EIF4A2 RHOB RPL8 PGRMC1 IFI6 ISCU TMEM70 CA2 HSP90AB1 GNG11 SLC12A5 PSMA7 RPL10A ATP6V1A RPS26 EMCN COX4I1 ID2 PDK4 C4ORF3 RAMP2 PCDHGA10 C10ORF10 PPIA ECM1 RPS2 STUB1 PSMD2 SAP18 STMN1 RGCC CMPK1 SPOCK2 MT-CO3 WBP2 CDK5R1 PCDH18 ATP5C1 RPS15 ADM SRP14 OAT C11ORF31 GNB1 ETS2 GAPDH MT-ND3 SERF2 IGF2 EDN1 NDUFB2 IFI16 CSDE1 POLR2L RBX1 UTRN ERG TUBA1B CHGB MT-ND4 LMO2 MT1E SLC25A22 PLEKHG1 TGM2 ENC1 RPS27A ESCO2 POMP PNP FAM43A NOTCH1 CST3 PAK1 RNF181 STXBP1 ZFP36 PODXL MYL12B MYCT1 PPDPF COX7A2 RPS3A TCN2 ATP5H PRELID1 RPS4X BSG ZMAT2 EPAS1 EBF1 C19ORF70 OST4 CLDND1 MRPS7 FIBP TAGLN2 PPP1CB MT-CYB EIF4G2 ZFP36L1 TM2D3 GMFB ARF5 IFITM1 PET100 RP11-20I23.1 RNASEK-C17ORF49 ATP6V0C GJA1 MIF RPL18A\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "endothelial cell" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: HBA2 HBA1 MT2A HBB TMSB10 BSG TMSB4X MT1X IFITM3 FLT1 MT-CO1 IFITM1 MTATP6P1 MT-ATP6 RGS5 MT-ND4 RPS15 PTMA MT-ND2 LGALS1 RPL13 RPS28 B2M ADIRF MT1E FTH1 RPS6 MT1F APOLD1 RPL37A MT-CO2 CALM2 CD63 RPL21 TBC1D15 DNAJC21 TCEB2 PTGDS EIF1B RPL36A IGFBP7 STC1 RPL3 RPS10 CTC-575D19.1 EIF1 SERF2 SLCO4A1 COX7A1 PTN RPL41 UQCR11 USMG5 TMA7 C1ORF64 STOM MT-ND3 CLDN5 GRAMD3 RHOA CD59 PON2 GADD45B TSC22D1 EGFL7 MT1M MAP4 MRPS28 RPS27A NOTCH3 TM4SF1 TNS1 DLC1 COX8A ARL8B FKBP1A ZBTB20 SUB1 TRPC3 MT-CO3 GAPDH CRIP2 MTUS1 CALM1 PEA15 PRKAR1A RPL7 C8ORF4 MT-ND1 ETS2 TUBA1B PECAM1 AP2S1 MT-ND5 C11ORF96 ARF1 PAM PDK4 RPL6 BAD ABCB1 GUK1 PFDN1 PDLIM1 PLD3 C10ORF10 HSP90AA1 IFITM2 COX17 PODXL ISCA1 RPL8 NDUFA4L2 SERINC1 TIMP3 SRGN ADSS ARPP19 EIF1AX STC2 MTRNR2L12 COX7C UTRN ANXA3 NBL1 LAMTOR5 CPE PFN1 RPS12 ACSL5 POLR2I LINC00087 CYCS CDKN2AIPNL PDP1 SMIM3 SPTBN1 ELOVL7 YWHAG YWHAZ ANGPT2 ACTB TUBA1A UBC DYNLL1 TPI1 MTCH1 RNF11 IDH3A GPR116 TCN2 SARAF LAMA4 ICAM2 DYNLRB1 UBA1 PLOD2 SEPW1 MLLT11 CASP4 UQCRQ RPL35 PRDX1 ADM C14ORF132 MT-CYB SKP1 GLUL SUMO2 POLR2L OAZ1 RPL31 VDAC2 PPP2R1A SERINC3 RHOJ PDCD5 GMFG ALDOA PPP1R14A PRKCH STAB1 SDF2L1 ATP2B4 EMP1 EPS8 IGF2 C3ORF80 EMCN FAM162B CYB5R3 ITFG1 NGFRAP1 SLC2A1 BRK1 ADAMTS9 EIF4G2 FTL AP2M1 RAB11A NDFIP1 KLF2 RPL10A VWF COL6A1 GNG3 EPAS1 CP YWHAH WBP2 CORO1B OCIAD1 PTGES3 ATP2A2 ATP1A2 ATP11C TMEM200C TPD52 NRGN BANF1 ARPC5L COPE ATP5I MIF PPDPF SEC61G RPL26 RPL18A ARHGDIA STXBP1 S100A10 SPARCL1 MT1L NFE2L1 NDUFA11 CYP1B1 LAMTOR1 ST6GALNAC1 ZMAT2 POMP PRNP SHE TM4SF18 ITM2B TAGLN2 PRELID1 UQCRB DCN EIF4A2 UBE2N COX6C SMAD6 CAPNS1 ACTG1 TMEM123 TUBB6 HEG1 SLC7A5 UQCR10 AURKAIP1 MT3 MTRNR2L1 CDKN1A FAM127A VSNL1 RPL17 NDUFB4 NDUFA8 NDRG2 KLC1 PJA2 SOX18 RARRES2 SNCA PINK1 ENG TRAPPC1 STK39 DNAJB9 TBX2 RABAC1 CLU RPL15 ATG101 TSPAN7 C19ORF43 AIF1L NINJ1 NDUFB2 CA2 SOD1 GRIN1 GSTP1 CADM2 RPL17-C18ORF32 PLAUR ATP5B MTRNR2L8 LINGO1 RANBP1 HIST1H2AC ATP1B2 GNG11 CAMK2D TKT UBA52 GJA1 SRP9 APLP2 EPS15 CLTB COPS7A PGRMC1 DCLK1 PVRL2 DCTN3 RPS26 C4ORF3 RPL38 CDH5 APOL6 BST2 PLEKHG3 TTN NTN4 APP MYL12B EGR1 PRKACB PSMB5 PDZD11 CAPZB PEBP1 C6ORF1 MYL6 NDUFB11 PLAC9 PARP14 RTN4 DUSP6 SHARPIN RPS4X CTDSP1 UBL5 NDUFA1 HSP90AB1 COX4I2 GDI1 RHOC GSTO1 IL1RL1 RPL32 HNRNPA1P40 RP11-20I23.1 RPL23A RNASEK-C17ORF49 ATP6V0C IDS SNAP25 GTF2H2C_2 PCDHGA10 PCDHGA6 PCDHGA5\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "endothelial cell" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MT2A MT-CO2 MTRNR2L1 MT-ND2 TMSB10 MTRNR2L12 BSG MT-ND4 IFITM3 YBX3 FLT1 MT-CO3 ACTB MT-CO1 ITM2C MT1E TUBA1B EID1 IFITM1 MT1M MT1L RABAC1 MTRNR2L8 LGALS1 MTRNR2L6 ARL6IP1 VAMP2 RPL11 TGFB1I1 VWF TMSB4X MYL6 SLC1A3 MT-ND3 SLC19A1 SPARCL1 NDUFB2 RPL13A CYFIP2 UBA52 IFITM2 RPL13 COX6C MT1X TOMM7 S100A6 GADD45B ATP5E COX4I1 CALM2 SNAP25 KLHL5 TM4SF1 ITGA11 FSCN1 C1ORF115 FTL FAM107B DLC1 RP11-632C17__A.1 SV2B IFI6 RPL7 HIC1 MRPL12 LANCL1 MFGE8 NOTCH3 NAPA RPS28 MYL12B RAB2A GPR133 RPL3 PODXL CNDP1 AES RPS27A SLC7A5 GDI1 FBXL15 ARL8A MT1G EPHX2 NDRG2 VSNL1 FAM162B GUK1 CLIP3 A2M RPS12 ADM ETS2 TMEM204 ARHGAP42 DCTN1 RGS5 ARHGAP29 NDUFB8 UQCRFS1 UBL5 RANBP1 ATP5B NDUFB7 SPARC LGI3 RAB3B ADD2 MTFP1 VEGFA MT-ATP6 RPL10A NPTXR ICAM2 SLC2A1 SRP14 MMD SERINC1 CD63 CLEC14A RGS4 C10ORF54 S100A10 BRK1 ISCA1 PGK1 MT-CYB MT-ND1 COL6A1 COX5B HSP90AB1 DUSP1 SLC25A6 PTGES3 MYEOV2 MT1A PTGDS CAPNS1 NHP2L1 GAPDH HSPA8 CFH SLCO2B1 POMP TANC1 SELM ACTR1A NUDT21 RAP2A ATP6V1G1 C7ORF50 TSPAN7 RPS6 DCLK1 INA ARL4C CKB PACSIN1 CALM1 TMEM258 PRNP ARPC4 PEA15 DIRAS2 MRPL52 RPL37A COX6B1 PTN TPI1 RPS2 TM4SF18 GBE1 ALCAM STMN3 ACSL5 POLR2J SUMO1 EIF1 POLR2L HIGD1B CERS6 COX7B YWHAQ BEX2 HINT1 RHOC S100A13 TCEA2 CA4 NR2F2 RPS19BP1 SLC17A7 ATP6V0C RPL6 RPL21 RP11-20I23.1 ALDOA TBC1D15 DNAJC21 MIF\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "endothelial cell" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MT2A CLDN5 RPS28 BSG MT1X TMSB10 UBC APLN RPS6 TMSB4X FLT1 APOLD1 EIF1 RPL13A PLEKHG1 ANGPT2 RPL21 IFITM3 CD59 MT1M ELTD1 ARHGAP29 CDH5 RAB3B PRDM1 MT1L RPS26 ELOVL7 RPL23A RGS5 MT-CYB RPL17-C18ORF32 PNP SARAF RPL11 RPL3 EGFL7 XAF1 MT1JP ACTG1 ID1 VIM SPTBN1 SMIM3 RPS4X MT1F IL1RL1 ADM BOC RPL12 FOS SLC7A5 MT1E PODXL MT-CO2 ZBTB20 KLHL5 RPL17 RPS15 TRIB2 LGALS3 PSMD2 ADIRF VWF RHOB C12ORF57 YBX3 SLC2A1 AKAP12 LGALS1 TGOLN2 GAPDH PJA2 CORO1B SLC25A4 SRP9 TCEB1 VWA1 RPS5 BRK1 MIF ZFP36L1 RAB6A LHFP CTSD TMEM51 ITGA6 EMCN PSMD8 RPL35 SUMO3 CCDC25 TSC22D1 C4ORF3 COX5A TPI1 ITM2A TOMM7 PAQR8 PDP1 PSAP CALM2 DUSP1 LGALS9 TRPT1 SPARCL1 RHEB SLCO4A1 MT-CO1 GPR56 PNMA1 CALM1 SMYD2 TMX4 TPT1 RPL38 UBA52 TMEM123 TUBA1A ACLY PVRL2 SRP14 MAP1B ISG15 C14ORF2 TUBB4B ATP5J TAGLN2 ITGB5 MT-ND4 MTUS1 SDCBP ENG PPM1A LCAT MYEOV2 IFITM2 GJA1 RNASE1 LSM4 SRGN MAPK1 ADAMTS9 TCEB2 DUSP6 ICAM2 C1ORF64 CCDC68 RP11-111M22.2 NDFIP1 CFL1 MT1A PRKAR1A ACSL5 RPL13 ATOX1 USMG5 UQCR10 TGM2 QDPR SLC38A5 EDF1 S1PR1 PSMA7 RAB1A TRMT112 TMSB4XP4 JUND RPL37A PLAUR PLOD2 PPIA ACTB FTL MYCT1 AHNAK PCMT1 NDUFAB1 OLA1 GMFG SKAP2 PTGES3 ATP5E ABCB4 RPS27A GPX1 SLC39A10 PRTG PFN2 STC1 RPL7 MT-ND2 PTMA PKM BLOC1S1 RPL26 HES1 RTN4 SLC1A3 SEC61G CMPK1 INPP5F SPOCK2 METTL23 NOTCH1 SLC7A1 ARFGAP2 BIRC5 SERF2 MTRNR2L12 MTRNR2L8 IDS RPL41 IFI27 TBC1D15 DNAJC21\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "endothelial cell" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MT2A TMSB10 TMSB4X IFITM3 APOLD1 RPL13 BSG ACTB PDGFRB YBX3 MT-ATP6 C12ORF57 MT1F MTUS1 ADAMTS9 CRIM1 SRGN CD59 RPL15 FTL SEPW1 NDUFA4L2 EPAS1 ATP1A2 FLT1 EIF1AX HSP90AA1 MT-CO2 CLDN5 MT1X RPL41 FTH1 RPS28 TXNIP RPS15 CPE IFITM2 SYTL2 ACP1 TUBA1B SKAP2 LAMA4 SELM SIGIRR NDUFA1 RPL7 NDUFA13 RAPGEF5 WBP2 DGUOK EIF1 DYNLRB1 ARL6IP1 MTRNR2L1 SLC19A1 RPL13A PTMA TM4SF1 GNG11 EDN1 SPARC RPS26 RPL8 C1ORF54 MYL6 SNAP25 PET100 SPARCL1 CLDND1 RPL21 RPL3 A2M MT-CYB SERF2 MT-ND4 CDH5 NDUFB2 CD9 COX4I1 MT1L COL4A3 MT-CO3 PSMC5 CALM2 TCEB2 COPS8 TRMT112 DPYSL2 COX7B APLN SLCO2B1 GAP43 NDUFB10 HTR1F MT1M MPC2 C4ORF3 DNAJB6 CYSTM1 ATP5E OXR1 PODXL RPS27A AP2S1 TRIB2 LGALS1 UQCRH UQCR10 FIBP NDUFB7 VAMP2 COX7A2 B2M ATP6V1G1 RPL31 TMEM258 TAGLN2 COX8A ETS2 SIPA1 SARAF S100A6 UQCR11 PLAC9 RPS10 MTRNR2L12 CLTC DLC1 TSPAN7 PRELID1 CPNE8 AP3S1 GNB1 STMN1 TNS1 GRINA TSPAN4 PPIA FAM96B CLU MLF2 ACTG1 NPTN UBC MFGE8 TCEB1 MYO1B ERG ID1 NDUFB4 ATP5J ELOVL7 DCN TUBA1A ROBO3 MZT1 SPTBN1 UBA52 DYNLL1 UBL5 MAPKAPK2 CTDSP1 TGOLN2 FKBP1A VSNL1 CFL1 TGM2 KRT17 RPL12 MTRNR2L8 PECAM1 GABARAPL2 ATP1B1 NUDT4 PFN1 SEC61G OLA1 TMA7 EIF1B TM4SF18 ATP10A DKK3 FAM127A SLC7A1 TBCB NFE2L1 NDUFAF3 MT-ND1 RPL32 TPT1 GLUL PSMB7 TCEA2 RNASEK-C17ORF49 MT1E ANXA1 SHISA6 TUBA1C KLC1 MTRNR2L6 PRKAR1A TOLLIP SPOCK3 GJA1 CDC37 UBE2M ITM2B CASP7 PHPT1 PSD3 SAMD9L CHMP5 NOTCH3 RPL38 CALM3 ZIC1 SLC2A1 TSC22D1 GPM6A SLCO4A1 SH3BGRL3 GPR116 GAPDH SPOCK2 PPP1CB SERINC3 AKAP12 SUB1 ENC1 MT-CO1 BGN GPER1 MRPL20 S1PR1 EIF4A2 YWHAQ CTC-575D19.1 QKI EIF5A2 FXYD6 PMEPA1 MORF4L2 ATP5I NARS MIF SLC25A6 EFHD2 ALDOA RPL17-C18ORF32 SNRPN RPL17 CHGB NR1I3\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "endothelial cell" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MT2A TMSB10 MT1X CLDN5 ADAMTS9 RPS15 SLC7A5 MTUS1 RPS6 ACTB EIF1 BSG EPAS1 IFITM3 RPS28 SLCO4A1 ANGPT2 MT1E AKAP12 TUBA1B RPL35 MT-CYB CALM2 PLOD2 RPL41 ATP1A1 JUND RGS5 CTC-575D19.1 IGFBP7 ELOVL7 ENG VWF TMSB4X CD59 TMEM123 B2M CDH5 YIPF3 IFITM2 TUBB4B ATP6AP2 DUSP6 SPARCL1 RAB5C TGM2 SERF2 A2M ATP5H DCLK1 MT-CO1 MTRNR2L8 NDUFB1 GUK1 RPL38 RPS26 SRGN PGK1 MTRNR2L1 PRDX5 RPL37A COX5B NDUFB8 PPIA EDN1 TMA7 CRIP2 YWHAH CD9 PET100 RPL3 ARHGAP29 STC1 YBX3 EMP1 POMP C10ORF10 NOS3 TPI1 RPL13A SYNJ1 FLT1 MTRNR2L12 PTGDS RORB UQCRB XAF1 PNP EGFL7 MIF SNX10 RTN3 MAP2K4 RELL1 CRIM1 SDCBP SLC38A5 TSPAN12 GNB1 C1D PRELID1 FIS1 BAD UQCRH TAGLN2 RPL26 PKM MT1M ATP10A CPE TRIM47 RPL15 IL4R APOLD1 COX8A MZT2B SPTBN1 PRNP CTBP1 UQCRC1 ARHGDIA NDUFA2 LAMTOR5 NDUFB2 IL3RA BNIP3 PSMD8 ITM2B PARP14 EPS8 NCDN MRAS DNAJC6 GPR56 ABHD8 STOM STUB1 APLN SLC6A12 PLSCR1 MT-ND5 PTRF AES RPS4X SUB1 TM4SF18 TOLLIP OLA1 MYCT1 TCEB1 TMEM120A RNF11 FKBP8 GPM6A CA2 WBP2 IFITM1 YWHAG COX7B NDUFS5 FKBP1A FTL GJA1 ANAPC11 SDPR CRKL TM4SF1 PON2 USMG5 PRDX2 CADM2 MT1L UQCR11 EHD3 SLC25A5 MAP4 ICAM2 SYT1 ENO1 PHYHIP MT-ND2 MT-CO3 REPS2 PARP4 MT-CO2 TMEM70 LRRC32 HLA-B MORF4L2 MT1F DCTPP1 RAB11FIP5 TSHZ2 CD44 RPS12 GAPDH CTSD RHOJ MT-ND4 PTN MYL6 VDAC1 TIMP3 WSB2 HDLBP DDAH1 ENO2 RPL13 KLF10 RAB13 PNKD APP SRP9 TKT RPL23A CPNE2 CDC37 HSPA8 TUBA1C UBE2V2 TMEM65 KLHL5 TCEB2 S100A6 ACTG1 DNAJC5 PODXL ATP5J2 GDI1 ENSA ATP5B PFN1 SPARC RPS27A SLC2A1 FBXO8 WARS SLC25A6 GYG1 SOD1 YWHAB CDK5 PPA1 NDUFB4 ELTD1 DPY19L1 SEPW1 ATP5G1 GIMAP4 PEA15 IGF2 SARAF ADIRF PRDX1 MT3 MTPN VEGFA S1PR1 SNX3 VAPB BCAP31 AGT DUSP1 VDAC2 NHP2L1 HSP90AB1 COL6A2 FTH1 TRIB2 MAP2K2 SELM CHN1 BRK1 SCN3B HIF3A MYEOV2 OXCT1 GADD45B TEAD4 CP CLIC4 UBB PLIN3 TUBA1A FAIM2 RP11-111M22.2 RPL31 JUNB CALM1 ALDOA RPS3A PLEKHD1 RAB3B SYTL2 RP11-20I23.1 ZNF385D ATP6V0C PGAM1 RPL21\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "endothelial cell" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MT2A TMSB10 MT-ND2 SRGN MT1E MT1X CLDN5 MT-CO1 RPS6 FLT1 IFITM3 MT1F MT1M MT-ND1 APOLD1 ACTB BSG TUBA1B CD59 MT-CO3 YBX3 B2M RGS5 PLSCR1 RPL41 IFI27 S1PR1 MT1A CA2 SPTBN1 SERF2 TGM2 APP IFITM2 GADD45B PPP1CB GAPDH ELTD1 MT-ND3 BTNL9 PEBP1 MTUS1 EGFL7 LEF1 NOTCH1 DUSP1 SPARCL1 ITM2A UBC SKP1 RHOB ATP6V1B2 TMEM123 MT-ATP6 SNAP25 RPL37A TOMM7 RPS28 GNG11 IFI35 ARHGAP29 USMG5 WARS IFI16 MIF PECAM1 RASGRF2 SNCA BHLHE40 PARP14 UQCRB SSTR2 HLA-B NGFRAP1 TPT1 ATP5B XAF1 TMA7 PREX2 PPIF CCND1 SAP18 RPS27A TCN2 EMCN CDKN1A COBLL1 GPX4 TUBB2A PKM LHFP SMS TMEM130 CP DYNLL1 RTN4 ZCCHC24 CTNNB1 PTGES3 SLC24A2 MT-ND4 ABCB1 SLCO4A1 GRPEL1 UQCR10 RPL13A TM4SF1 ARL8B PLAUR KLC1 CPNE8 CCDC85B FKBP1A DUSP6 NR2F2 CALM2 PRDM1 RPS12 GPM6A MMD CLU CCDC68 ADAMTS9 NDUFA4 TGOLN2 CNRIP1 RPL31 RAB2A RGS12 MED10 ZBTB18 UBA52 COX5B PPP3CA LPAR6 BEX2 ATP9A RLIM VAMP2 ADM SCN3B ITGA6 RHEB PLOD2 CSDE1 COX6A1 RPL13 RNASE1 PTMA AHNAK RPL10A ARPP19 ITM2B ACLY COX8A GPR4 STOM KRAS EPAS1 PPP3CB DYNLRB1 HSP90AA1 CRIM1 MTATP6P1 IFI6 SLCO2B1 LAMA3 RNF144B SLC31A2 VIM RPL11 CLPTM1 CDH5 SDPR CDK17 PSMD12 COX5A EDN1 FTL PODXL GABARAPL1 MT-CYB RPL32 ATP6V1G1 ZFP36L1 AKAP12 CALM1 D4S234E COMTD1 ADAMTS1 FBXW11 IL4R EIF4G2 COX17 PON2 VWF PPP2R2B TSPYL1 ANGPT2 SDCBP HSP90AB1 ARL6IP1 TAGLN2 HEG1 FTH1 TUBA1C DCLK1 TSC22D1 ITGB5 JUND ASAP1 MARCKSL1 RPL35 RAB13 PRKAR1A COX6B1 ATP5E IDS RPL17 RPL17-C18ORF32 RPL18A MTRNR2L6 RP11-111M22.2 TUBB AC244489.1 RPL21 TBC1D15\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "endothelial cell" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: HBA2 HBB MT2A HBA1 BSG MT1E IFITM3 RPS28 TMSB10 GAPDH PODXL MT1X RPS27A CLDN5 RPL17 EIF1 EPAS1 TPI1 ATP1A2 MT1F TMSB4X MT-CO1 MT1L RAPGEF5 MT-CO2 SMIM3 FLT1 DYNLL1 IFITM1 TPT1 RPS15 SRGN RPL35 CETP COX5B UBA52 RPL11 MT1M CRIM1 RPL37A LEF1 TMA7 SLC2A1 PRKAR1A SH3BGRL3 MYL12B IGFBP7 SEPW1 ATP1A1 S1PR1 VWA1 B2M TNS1 CPE SLC25A4 IFITM2 TUBB4B TBCA ANAPC11 COX7A1 POMP SELENBP1 SPARCL1 CD59 LGALS1 C4ORF3 COX7C SPOCK2 HN1 YWHAB FTH1 ACTB VAMP2 NDUFB4 PTMA ACTG1 S100A10 MTUS1 RPS6 HIGD1B DYNLRB1 CDKN1A ENC1 MT-ND3 RBX1 UQCR11 POLR2J YWHAZ TSC22D1 CD63 NOTCH3 C14ORF2 CLU SERF2 A2M USMG5 ANGPTL4 CALM2 SERINC1 RPL3 ARHGAP29 YWHAG GPR116 SLC7A1 CD93 GADD45B SPARC EIF1AX C10ORF10 RHOB ZIC1 EGFL7 SRP14 GNG11 ITM2B PTGDS RPS2 FTL APOLD1 NR1I3 MIF MYL6B RPL12 FOXC1 VEGFA CTSD CALM1 SMYD2 ZFP36 ETS2 PFN1 PITPNA PROM1 EDNRA PHPT1 TBX2 CAMK2D AHNAK RP11-111M22.2 SCN4B DEXI TCEB1 CD9 VSNL1 AKAP12 H2AFZ OAZ1 RAB34 TUBA1A MYL6 COBLL1 MORF4L1 RGS5 OCIAD1 UQCRH CLSTN1 DUSP1 TOMM70A RPL13A GRINA COX7A2L TP53I11 C10ORF54 SSBP3 GPX4 RP11-20I23.1 DCN PSMD12 COX7A2 IL13RA1 ITM2A TMEM160 RPL21 CFH KLC1 VWF PPP1R14A RPL41 ATP6V0C ATP6V1G1 GNAQ GSTP1 HSD17B14 RPS4X RPL13 YBX3 IFI35 MMD FABP5 SLC25A11 NME1 SUMO2 ARPP19 SNTB1 ADAMTS9 COX6A1 MRPL55 EID1 PPP3R1 GRIN2A PPA1 PPP2R1A ZFP36L1 FKBP8 NDUFS5 NRCAM LMBR1 AP3S1 COX6C EFR3A C1ORF52 APP PPP2CB SNAP91 OR6D1P INSIG1 GUK1 BST2 MPI ANGPT2 LRRC32 SLC38A5 VDAC2 COL6A2 ARF1 MT-ND2 RAN C1ORF64 DCTN1 IGF2 COPS7A S100A16 PRDX2 GRM8 PTN CPNE8 ABCA8 TERF2IP CTNNA2 SEC61G STMN1 MRPL20 SKP1 HIF3A DISC1 BEX4 TAGLN2 DNAJB6 TGFBR2 KANK3 RAB11A SLC19A1 TMEM204 NMBR NDUFB11 IFI6 MTRNR2L1 ADM DCLK1 SLC7A5 PKM SLC6A1 CDH5 PMEPA1 SLC6A12 NEK7 SLC1A3 NDUFC2 ID2 BTNL9 PPDPF MYEOV2 ELOVL7 ATP5J2 EIF4A2 CYCS MT1A GABARAPL2 RHOJ SLC39A10 POLR2K NBL1 TXNIP LMO4 MFSD2A SPTBN1 RPS3A NDUFA1 DPYSL2 ECM1 XAF1 PLIN2 MRPL33 NDUFA13 RHOC TMEM123 YAF2 TIMP1 EGFR ICAM2 FKBP1A IMMP1L CRIP2 FSCN1 KCNAB2 RTN4 RPL38 NAA38 TMEM258 COPS8 CLTB UTRN NDUFB8 PON2 OST4 NDUFA12 TUBA1B GNG3 CA4 PAQR8 CDC42SE2 RP11-219A15.1 MTRNR2L6 IDS RPL18A RAB3B SYTL2 ARFGAP2 RPL36A IFI27\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "endothelial cell" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MT2A TMSB10 MT1E MT1X ACTB PODXL APOLD1 TMSB4X FTH1 MT-CO3 MTRNR2L12 TMEM123 MT1M FLT1 RPL37A ANGPT2 UBC RGS5 B2M CLDN5 IL1RL1 SPARCL1 IFITM3 BSG PTN RPL21 TUBA1B RPL3 CA2 RPS28 RPS6 ACTG1 VWF SLC2A1 TM4SF1 SPARC YWHAH CYB5R3 MT1F AC244489.1 TCEB2 EIF1 RPS4X SERF2 ERH YBX3 MT1L IFITM1 AKAP12 UQCRB SDPR TPI1 DCLK1 RPL32 COX6B1 MT-CO2 CD63 DNAJB6 DUSP1 STC1 SLC1A3 S1PR1 C1ORF64 ADAMTS9 RPL23A DSTN TGM2 QKI EPS15 MT-ND4 MTRNR2L8 RPL35 PTGDS FKBP1A GAPDH RPL11 CALM1 FAM84A PLSCR1 COX8A DLC1 NFIA BANF1 APLP2 ACSL5 RREB1 ATP5B RPS15 ECM1 COX6C SPOCK3 IFITM2 TPT1 DCN GNB1 PTRF POMP POLR2L HEG1 COX7C SRGN SUMO2 TMA7 RPL13A SLCO4A1 RPL41 ITM2B CRIM1 NDRG2 ETS2 PRDM1 MT-CO1 ATP5J2 BEX2 ETS1 MAP1LC3A C10ORF10 HSP90AA1 MTRNR2L1 MZT2B TERF2IP ATP1A2 NOP10 RAB3B MYL12B ARHGAP29 GSTP1 RPL10A EPAS1 RPL13 ATP1B1 CFL1 A2M PNP TSC22D1 RGS4 PEA15 PLEKHG1 LGALS1 TXNIP TOMM7 S100A10 DYNLL1 YWHAZ MT-ND4L RNASEK-C17ORF49 RPS3A RPS10 RBX1 MRVI1 PPP1R9B HDLBP STUB1 XAF1 RP11-632C17__A.1 RNF11 POLR2J PFN1 CYCS VSTM2A ID1 WBP11 RP11-111M22.2 F3 ITM2A ANAPC11 DUSP6 SELT TRPT1 OST4 ANK1 RHOC RAD23B ITGA6 PRDX1 CHCHD2 VAMP1 TRPC3 ENO1 COX14 RPL18A PRKACB SPOCK2 TTYH2 HINT1 PLD3 EMCN SSTR2 MYL6 RAN SDCBP TUBB2A BEX4 COL6A2 REEP5 SNAPC5 MORF4L1 KLHL12 SAP18 RPL6 PRSS3 NDUFC1 SLC19A3 HMP19 NDUFA2 CLEC14A DNAJB9 RPS26 TSPAN7 CYSLTR2 KANK3 SLC38A11 WARS MAP2K1 NEFL BIRC5 NDUFA8 H2AFZ PPP3R1 MT1G RHOJ MT-ND1 SLC6A17 CTSD PRRX1 PECAM1 NDUFS5 MAPK1 NOTCH1 NOS3 GUK1 SHARPIN MTRNR2L6 PRKAR1A CAMK2D CPE RPL39 ELFN1 RPL8 RPL38 MT-ND3 COMMD6 TCEAL2 EIF4G2 IL4R TRMT112 UQCR11 EMP1 ELTD1 JUNB ITGB5 SERP2 EPS8 CALM2 RPL12 RPL7 FASN RNF152 CPNE8 RND3 SUCLA2 BTNL9 TRIB1 MAP4 MIF SCD5 RPL31 RSL24D1 PSMC1 ATP5E IGFBP7 UBA1 EGFL7 SYPL1 CDH5 RPS5 MT-CYB RPL15 PRELID1 FKBP8 CAPZB PPP2CB CDC37 PSMA7 NDUFC2 EIF4A2 APLP1 BCAP31 BHLHE40 RPL26 MORF4L2 MYCT1 DLL4 HSPA8 GSTO1 PRNP CLIC4 COL6A1 CLTC MECOM GPX4 GJA1 GPR116 C1QBP ATP5O MT-ND2 DYNLT3 WWTR1 ICAM2 ARPC4 NEK7 PKM PJA2 PVRL2 TMX4 SERPINI1 SLC39A10 PPA1 VIM VAMP2 PCYT2 PTMA CD93 FXYD6 MARCKSL1 CD59 GUCY1B3 RGCC ATOX1 ZBTB20 KCTD12 RELN CLIP2 PPDPF AHNAK GPR56 COL1A2 EDIL3 RAB6A TUBA1A PXDC1 AP3S1 PPP3CA NPTN ATP5I MYO1B MLF2 TAGLN2 EDN1 GNAQ SLC19A1 DNAJC5 TUBB ASB13 CDKN1A GRM3 PPIA PSMD2 EFHD2 RPS27A MRPS21 VPS35 UBE2M PINK1 ATP1A1 PPP1CB SH3BGRL3 LZTS1 UBA52 GPM6A PON2 UCHL1 TMEM179B RPL36A NDUFA13 CFH RPL17-C18ORF32 TWF1P1 GABARAP RPL17 IFI27 ATP6V0E2\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "endothelial cell" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MT-CO1 CHN1 ATP1A2 ARHGAP29 CLU GAPDH TBC1D15 PRNP MT-ATP6 SLC2A1 SLC6A1 CALM1 CCK TMA7 KLC1 PDGFRB ATP2B2 LMO4 TMSB4X IFITM3 MT-ND4 SYT1 A2M NFIA ITM2B RPL38 PGK1 ENC1 APP MT-ND2 NRCAM BST2 ATP6V1B2 SEPW1 CST3 PRDX1 MT-ND3 NAT8L ABCA8 EPAS1 GPIHBP1 RAMP2 OAZ1 SEC61G RIIAD1 ITM2C OR6D1P UCHL1 CLSTN1 PRKAR1A TMTC1 LDB2 COA3 GAP43 YWHAB DNAJB6 TUBA1B SARAF OCIAD1 FXYD6 RTN3 PREPL RTN1 IFI6 MAP1B SPOCK2 MT-CYB STOM ACTG1 RHBDD2 UBC NRGN COL5A2 PRKCH PIN1 RPL23A TIMP2 ECM1 RPS28 BSG MT2A CFH SPARCL1 RPL35 VPS35 PLD3 EGFL7 ARF5 ATP6V0C RP11-20I23.1 TESPA1 XAF1 CSDE1 CTNNB1 GSTO1 COX7B ATP6AP2 CALM3 PODXL CYB5R3 COX7A2 PGAM1 NDUFA1 EIF1AX IGFBP7 TXNIP SNN LMBRD2 WWTR1 MAL2 ZFP36L1 CA4 FAM84A DSTN RBX1 TUBB4A ARPC4 TMEM59L KIF21A TSPAN7 HIGD1A RAB7A SPCS2 NDFIP1 STUB1 COPS7A RPL10A ATG101 ATP1B2 BASP1 GSTP1 DGUOK CPE ZIC2 BAG4 UQCRB PRKACB SLC39A10 TMEM200C WDR4 CADM2 SELM PRKCB NDUFAF3 ESYT1 SOX18 TRIB2 ATP5B CLDN5 PPM1A MTRNR2L1 PTGES3 ATP6V0D1 RASGRP1 HAPLN4 IFI44L NEFM CX3CL1 COX6A1 PCDHGA10 GPM6A TCEAL2 CALM2 FOXC1 KANK3 RPL37A SCAMP5 TMEM204 TMSB10 RPL32 AP2B1 ADAM23 LGALS1 MFSD2A EDIL3 GBE1 CHL1 B2M AURKAIP1 CA11 THY1 CACNG3 PIK3R1 TMEM130 PEG10 SLC22A17 HMP19 BEX2 MMD CASP4 PPIA DMTN ETS2 IGF2 ATP6V0B DPYSL2 ARL6IP1 IL3RA SCN2B ITM2A NECAB1 CD63 ITGA6 DKK3 ATP10A CLTC FKBP1A MAPRE3 SLC9A6 TMEM179B CLIP3 MT-CO3 SYN2 SKP1 EXTL2 SAMM50 GRM3 RPL13A ATP6AP1 LPAR6 NGFRAP1 LHFP PET100 TMEM123 LZTS1 TMSB4XP4 MYO1B TM2D3 RUNX2 PLTP FIS1 FTH1 RPS5 UBA52 NDUFA11 PTN UTRN NDUFB8 LINC00087 RPS6 PARM1 ATP5J CREG2 ACSL5 PLAC9 COX7C TMX4 GNG11 STK39 MYL6 RPL17 SCD5 RPL21 ZBTB20 BAD NDUFA4L2 CLPTM1 RPL11 TSPYL4 TOMM20 SULT4A1 PALD1 FRZB LRRC59 OLFM1 ELOVL7 GNB1 ABCB1 MTCH1 DNAH11 ATP6V1F PTRF RPL3 SH3RF1 UBE2D2 VIM ARHGAP24 PLCB1 PPP2CA SYNGR1 KCNV1 CAP2 NDUFB10 SLC19A1 SRP9 UBQLN2 ATP5G3 RAB2A RGS5 RHEB NDN UBA1 MLLT11 DLC1 ACTB RNF181 PTGDS TMOD2 GOLIM4 COL12A1 IFI16 CNTN1 ATP2A2 STMN4 HSPA8 DNER RAB31 CAMK2D SERINC1 CHGB TRHDE SNCA GRIN2A RRAGA NDFIP2 LSR STMN3 RPL39 HSP90AB1 NIPA1 YWHAG DUSP2 RPS15 DNAJB9 SERPINF1 RARRES2 ZMAT2 SV2B YWHAZ MAPKAPK2 ATP5O RAB1A RTN4 RABAC1 YWHAH SLC6A17 CDK5R1 OLFM2 HLA-B AGT FSCN1 QKI GUCY1B3 SLCO2B1 NDUFA4 IFI27 RNASEK-C17ORF49 PSMB3 NSF IFITM1 RPL31 IDS PLEKHD1 HNRNPA1P40 DNAJC21 TF\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "endothelial cell" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MT-CO1 MT-ND3 PTMA MT-ND4 ATP1A2 RGS5 MT-CO2 MT-ND2 TMSB4X TMSB10 MTRNR2L1 WWTR1 CALM1 MT-CO3 FLT1 ATP5I FTH1 EGFL7 DUSP1 CD63 OLFML2A RPL35 MT-CYB MT-ND1 RPL37A RPL13A ATP5E B2M RPS28 A2M EPAS1 FTL CALM2 IFITM3 KCTD12 DCN CLDN5 SLC38A5 PTGDS ATP5B YWHAQ STOM RAMP2 SAMD9L SPARCL1 PALD1 ICAM2 ZBTB18 BSG PET100 MTRNR2L12 MYL6 SPARC RPL36A ARFGAP2 SPOCK2 HIGD1B PCDH12 EBF1 ABCG2 KLF2 ACTB RTN4 MT2A PLTP CSPG4 NFIA SLC6A12 MT-ATP6 PPP2R4 RABAC1 POLR2L PSAP DCTN1 IQCK MORF4L1 SYT11 EIF1 PSMB7 C11ORF96 DLC1 MGP RSL24D1 SLC40A1 LMBRD2 RAB31 RHOA RPL18A ATP5J2 GGT5 SIPA1 EFCAB13 ARHGAP29 NDRG2 MTRNR2L8 HDAC1 MTND1P23 MT1M ELTD1 BCAP31 NAA38 BGN NDUFS5 IGFBP7 SH3BGRL3 SERP2 MAP7D1 ATP6AP2 RAB11A SNRNP25 RGS12 LGALS1 ZCCHC24 UBC FRMD4B TIMP3 FOXQ1 SLIT3 EPS8 GNG11 LMO2 TM2D3 TXN GPR116 PTGES3 EIF1AX RPL7 PDGFRB MRPL52 CLEC14A NDUFA13 COL1A2 IFI16 NOTCH3 NUDT13 SERINC1 PHB ERH RGS4 UBA52 ITM2B GDI1 NDUFB4 RPL26 GPX3 TIMP1 DDR2 AIF1L PPA1 GABPB1 S1PR1 VWF PRNP ZNF423 DPYSL2 COX5B IFITM2 SLC6A1 RP11-111M22.2 GABARAPL2 COPS8 ATOX1 JUND TNS1 ARHGAP6 RPS3A CLU PTRF GNAQ VSNL1 CALCRL ATP6V0D1 GSKIP NSDHL SLC1A2 USMG5 XAF1 COL6A1 ATP1A1 RPS26 MRPL15 SPATA13 SRGN RPL13 CERS6 HEY2 RPL15 SQLE KIAA1731NL TMEM150C ZIC2 SERINC3 SRP14 TGM2 SEPW1 LHFP C19ORF53 CCDC85B C19ORF70 YBX3 S100A6 YWHAH RPL32 ABCB1 CLIC4 SLC19A1 IFI6 MFGE8 RAB5C COX17 BOC SLC22A17 CTNNB1 RNF152 ATP6V1E2 DYNLL1 GPCPD1 PODXL CD44 MLLT11 SLC2A1 SNRPE CD9 CSDE1 APOL6 NDUFA5 DYNLRB1 PPP2R1A PGAM1 TXNIP STMN2 TMX4 CMPK1 MRPL51 RPL31 ATP6V1C1 CHMP4B TSC22D1 RAB11FIP5 VAMP1 RPS15 SPTBN1 NDUFV1 PINK1 PECAM1 PTN DAB2 QKI SYPL1 CCM2L METTL18 ETS1 MTCH1 RPL23A NDUFB2 CD99 PREPL RPS19BP1 C12ORF49 VDAC3 ATP5C1 SELM ZBTB20 LIMK1 ENG METTL7A CAB39 RAB3B SYTL2 TUBD1 IDS GABARAP IFITM1\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "endothelial cell" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: RPS28 BSG MT-ND3 SPOCK2 MTRNR2L12 MT-CO1 SPARCL1 FTL MT-CO2 CALM1 B2M RPL3 CLDN5 VWF MT-ATP6 RPS6 MT-ND1 MTRNR2L8 RPL41 TMEM123 MTUS1 SLC7A5 MT-CO3 TMSB10 XAF1 SPTBN1 RPL13 HEG1 PTMA PCDH18 VIM RPS15 RPL21 SPARC ABCG2 PRKACB MT-CYB NDUFA1 MTRNR2L1 FLT1 KLF2 TUBD1 RGS5 RPL23A TIMP3 IGFBP7 RPS3A PCBP1 ZFP36L1 RPL12 GPCPD1 SLC7A1 RAB3B TMSB4X RPL13A SLC38A5 SOX18 ARHGAP29 CTSD SKAP2 CCK KRTCAP3 EIF4A2 UBC ADIRF GABARAPL2 DUSP6 SEPW1 SNAP25 CAV1 SLC2A1 ATP6AP2 SCD5 RHOJ NCALD GUK1 TPT1 HINT1 APLP2 TIMP2 PTN RPS4X CCM2L COX14 RAB11A A2M CA2 SLC6A1 ABCB1 APOLD1 CTBP1 VDAC1 EDF1 NR2F2 MYL6 ARL8A UQCRC2 DKK3 NDUFA13 TANC1 CALCRL GSTT1 RPL35 HSPBP1 PKM GAPDH SELM CD99L2 ZNF503 CPE CDS1 ATP5A1 SLC7A8 CTNNB1 PITPNA TSC22D1 TMA7 RPL18A SLC39A10 UBE2D2 NBL1 UHMK1 FAM149B1 DNAJA1 VWA2 ITM2A GPX1 ARL6IP1 TMSB4XP4 UBA1 FAM43A PAM EGFL7 PPP2CB OAZ1 PIK3R1 MT-ND2 SERINC3 TCEAL7 PPP3CB LMO2 TSPAN7 RPS2 PLEKHG3 NDUFA4 CDC14A ATP6V1A POLR2L CDH5 RPL26 SH3BGRL3 UQCR11 PRDX5 EPS15 FAM84B CLTC EPHX2 ST6GALNAC3 GNB1 PTRF SERINC1 C4ORF3 NDUFB2 RPL38 IFI27 VDAC3 NARS SIPA1 KLF10 YBX3 PODXL FOXC1 RPL31 STK39 TRMT112 TGM2 MT-ND4 IFITM3 BTNL9 EBF1 ACTB HLA-B TMX4 RNF144B RAMP1 GREM2 AP3S1 IFI44L MRVI1 PPDPF UQCRQ KLC1 CTDSP1 RND3 RP11-111M22.2 MTRNR2L6 IDS UQCRB ARF5\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "endothelial cell" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MT-CO2 MT-CO3 MT-ND2 MT-ND4 MT-CYB MT-ND3 MT-ATP6 ATP1A2 TMSB4X MT-CO1 MT-ND1 A2M RPS28 SLC6A1 SLC7A1 RPS15 SPOCK2 ARHGAP29 ACTG1 SPARCL1 B2M SLC38A5 CLDN5 RPL13A MTATP6P1 CLEC14A RPL13 IFI6 RPS4X MTRNR2L12 PODXL TMSB10 PVRL2 VIM RPL32 BST2 DLC1 TSC22D1 ETS2 TMEM123 RPL8 CTNNB1 ADIRF FLT1 POLR2L FTL ITM2A SPTBN1 YWHAZ IGFBP7 RNASE1 LMO2 LAMTOR2 TNFSF10 CLU RPL38 WASL RPL10A ZBTB20 HLA-B MYO1B SLCO2B1 LHFP EIF1 NOTCH3 ACTB COX5B CPE OR6D1P GABARAP DNAJC21 ATP9A MT-ND5 PRDX3 FJX1 FAM189A2 EPAS1 COL6A1 GNG5 CALCRL EIF4A2 TMEM204 TPI1 AIF1L RPL18A MORF4L2 GPR116 RPS2 POMP MTUS1 ATP1A1 VDAC1 ATP5I PSD3 HSPB1 PAM SEC61G PSMD8 TXNIP NFIA SERF2 SLC2A1 ETS1 CSPG4 PTN MRFAP1 MFSD2A DYNLL1 RAB3B SYTL2 NUDT21 ERG CLDND1 RGS5 RPL7 FAM84B MANBAL NUTF2 PDGFRB AURKAIP1 PLTP IFI16 RPL11 TM4SF1 SLC38A11 GABARAPL2 MECOM PREPL MAST3 AHNAK CALM2 SUMO1 PRKCH NDUFA4 SYPL1 SPARC ARL6IP1 BASP1 RAB6A ITM2C SLC38A3 APP FRZB WFS1 BSG PAFAH1B2 PEBP1 MRPS28 TIMP1 GNG11 SPOCK3 PJA2 GHITM TAGLN2 VAMP2 STMN2 RPL31 ASAP1 MDH2 GAPDH YWHAB PPDPF MTRNR2L8 PPP3R1 GDI1 RELN SCN3B GPX4 PSMC3 SV2B LMCD1 CCK UBE2F UTRN PINK1 IFI27 EMCN MIEN1 PTRF CLTC ARPC4 GRM3 CDH6 SARAF RPL37A SLC19A1 ATP10A SUB1 CBLN4 C10ORF10 CFL1 GIMAP4 AP2B1 ENG CD99 GUK1 STK24 BIRC5 FOXQ1 CCDC85B TANC1 GPX1 NBL1 SH3BGRL2 NDUFB2 ALDOC NDUFA13 NOS3 TMEM11 REEP5 COX4I1 PLP1 UQCRFS1 MT1F PSMB5 SSTR2 COX6C SLC7A5 RPL15 HIF3A FRMD4B PRKCB UBA1 AXL ENO1 ISCU EPB41L3 RRM2B TMEM179B EGFL7 DYNLRB1 ARHGAP42 ABCG2 HES1 ETFB LSR CCDC141 FAM111A CRIP2 EIF1AX TRMT112 WWTR1 MT2A FOXP2 PLAUR SEPW1 COX7A2L UQCRB SOX18 C1ORF56 TPT1 RPS6 PFN1 MTRNR2L1 AP2M1 EDF1 RNF152 SRP9 ATP5E BGN HIGD1B PCBP1 C19ORF43 NDRG3 VWF GLO1 TMCC3 TUBA1B TBX2 TMSB4XP4 GPCPD1 RELL1 ID1 PGD RHOB RPS10 YWHAQ RPS27A ATP6V1A PPP1R7 KLF2 NDUFS5 RASSF3 LBH DNAJA1 UBE2E3 C10ORF54 IFITM2 COX7A2 ITM2B NHP2 TUBB2A FAM84A MTPN ST6GALNAC1 NDUFAF2 ATP6V0C SLC25A6 OPA1 EFR3A PTMA UQCRQ PREX2 ZBTB18 CTSD RAB1A GSTT1 NDUFS6 PIP4K2A HEG1 PGK1 CA4 TTYH2 LGALS1 ATP5B IQSEC1 ELOVL7 COBLL1 B3GNT1 UBL5 PPIA MPP1 DISC1 CD24 ITPR2 TGOLN2 RBX1 DRAP1 TRIM47 LMO4 TRIB2 PET100 CTBP1 ZIC2 UBB NDRG2 NDUFB10 LAMA4 ATP5A1 IGF2 COX7A1 SMS GNAQ JUNB TUBA1A RP11-20I23.1 TOMM7 IL13RA1 PARP14 NR1I3 TBC1D15 FTH1 IDS ALDOA RPL41 IFITM1 RPL3 PCDHA9 PCDHA10 PCDHAC1 PCDHA4\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "endothelial cell" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MT-CO2 MT-ND4 SPOCK2 MT-ND3 MT-CYB MT-ND2 A2M PTGDS MTRNR2L1 SLC7A5 ICAM2 SPARCL1 SPTBN1 TMSB4X MT-CO3 ABCG2 ZIC2 ITM2A TLE4 ACTB ATP9A FLT1 RPL41 RPL39 RPS28 MORF4L2 IGFBP7 COX7A1 CCM2L PFDN1 GPM6A CD63 HLA-B SLC38A5 MBP EPAS1 ARF1 FAM127A LRRC32 RPL37A BEX1 CARNS1 TM4SF1 THY1 RAB13 MOBP VWF RPS3A LGALS1 RTN3 PKM RPL8 KLC1 CLDN5 COBLL1 IL4R EDNRA RAMP2 HBB TMEM51 NRN1 SERF2 GOLIM4 PON2 PLP1 RPL38 UTRN UHMK1 GPCPD1 RNASE1 MT-ND1 HSP90AA1 DNAJC21 TMEM123 GHITM CYB5R3 CLU FOXP2 NDUFA5 SLC7A1 MT2A PPFIBP2 MYL6 NPTN BASP1 SUMO3 CMAS YWHAB TMEM204 KIF25 ATP5E ENG CYYR1 SYNPO HSP90AB1 NAPB UQCRB OAZ1 MT-CO1 MAGEH1 SCN1B TMA7 TMEM35 CDH5 SARAF TPD52 BIRC5 CX3CL1 PTRF GPR37 SLC7A8 DCN ARHGAP29 VDAC3 CRIM1 TUBB2A RPL35 GABARAPL2 CALM2 FAM3C YWHAZ CLTC SLCO2B1 CPE MT1L TSPYL5 TGFBR2 NDUFS6 MRPL55 RPL3 VWA1 LMO2 APLP1 GPIHBP1 ZNF365 SLC6A1 SOX18 RPL26 DKK3 TIMP3 RPL31 PFDN4 MT-ATP6 ALDOA SLC38A3 ELAVL2 SLC24A2 BST2 HTRA1 UBC TMSB10 PTMA GPR4 PGK1 OSMR SLCO4A1 UBE2F RASSF3 ZMAT2 NARS PTPRS ABCB1 MT-ND5 SYNJ1 NDUFA11 NRGN SERINC1 RGS5 OXR1 ITM2C TAGLN2 CNP PODXL LAMA3 RPL6 GPR116 B2M MTRNR2L6 HBA2 HBA1 RNASEK-C17ORF49 ZNF385D SYTL2 RAB3B PLEKHD1 HNRNPA1P40 TF\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "endothelial cell" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MT-ATP6 MT-CO2 TMSB10 MT-ND3 ATP1A2 MT-CO3 MT-ND4 MT-CYB RPS28 BSG ELOVL7 RPL37A MT-CO1 RPL13A MT-ND2 PTGDS SLC7A1 RPS27A ENG FLT1 RAB3B ACTG1 TPI1 A2M ASAP2 SPARC LRRC32 GPX4 SPARCL1 PTMA MTRNR2L1 COX6A1 EPAS1 ZIC1 ARFGAP2 TPT1 CLDN5 ARHGAP29 COX17 C19ORF70 VWF ATP6V1A MT1F SLC6A1 HSPA2 HES1 SNAP25 TMA7 SLC39A10 S100A16 YAP1 TCEB1 HLA-B GNG5 PECAM1 DSTN CD63 SLC25A4 TAGLN2 CTNNB1 XAF1 SERF2 ETS1 CD59 SLC2A1 COL5A3 SUB1 EIF4A2 EIF1 GAPDH MTATP6P1 RTN1 TOMM7 STXBP1 NDUFA4L2 ATP6V0E2 SYPL1 IFITM2 PRRX1 MAP1B NDUFB4 NDUFB8 IFI6 AP3S1 SLC38A5 RARRES2 MTRNR2L12 LMO2 RPL13 AZIN1 GSTO1 CFL1 FOXC1 CDC37 FKBP8 PPIA SV2B ZNF547 ATP5H ATP5J ARF1 STC2 GNB1 RGS5 HTR1F IFITM3 RGS4 RNF181 ARHGAP6 GIMAP4 CRIM1 HSPE1 CLEC14A SPCS2 SLC7A5 EFR3A SDCBP RPL18A GPER1 COL6A1 TGOLN2 PNKD RPL41 MT1G UQCRC1 COBLL1 DCN SPTBN1 ATP1A1 RPL11 IQSEC1 PSAP DNAJA1 YAF2 SPOCK2 LBH RPL10A NFIA RPL17 ACTB HSP90AB1 APOD CTBP1 PAQR8 AURKAIP1 SYT1 APLP2 SLC40A1 TMSB4X ATP5I PRX GGT5 PALD1 RPS15 NDUFA2 ATP2A2 TGM2 TMEM179B C19ORF53 NDUFB2 PKM CDK17 FTL GUK1 QKI MT1X GGACT UBA52 CCDC25 SERINC3 PTN MT2A RPL23A PEA15 COX7B HIGD1B CD9 IFI27 CNTNAP3 RP11-111M22.2 PCDHGA6\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "endothelial cell" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: ATP1A2 MT-CO3 MT-ND4 MT-ND3 APOD DCN MT-ND1 SLC1A3 RPS28 MT-CO1 MT-CO2 PTGDS COL1A2 HIGD1B RAB3B MT-ND2 PTN ABCA8 FBLN1 RPL32 TMSB4X PLTP SLC2A1 TGFBR2 TRMT112 RPS3A SLC6A12 PTMA BSG MT-ATP6 ATP10A VIM MFGE8 ITM2B COBLL1 CLDN5 HSP90AB1 GAPDH TPI1 A2M RPL37A LGALS1 TNS1 MTRNR2L1 CD63 IFITM3 IFI6 TMSB10 MT-CYB NBL1 HIC1 SPARC EPAS1 TMEM258 NR2F2 ARHGAP29 RELL1 FTH1 RPL39 CRIM1 RPS27A DLC1 BST2 NAPA SELENBP1 BCL6 LEF1 BANF1 MARCKS BTNL9 IL6R IFI16 ARPP19 PIK3R1 HSPBP1 SNX17 RTKN TSC22D1 DDR2 EDNRA KL AES UBQLN2 ZFP36L1 CAPZB ZNF574 PDGFRA HES1 COX7A2L ADM HDHD1 RAB4A METTL7A RPL41 ATP1B2 ENPP2 APLP2 PTGES3 PAM SERF2 SLC6A13 RHEB IGFBP2 NFIA COL6A2 IFI44L PLCB1 SSBP3 CYB5R3 LBH ABCB4 ATP6V1G1 ISG15 RAB34 COL12A1 LDHB BOC SOX18 CALM2 GPX4 ITPR2 SLC25A6 CA4 CYP1B1 ATP5O RGS4 C16ORF13 DSTN NEK7 RNF11 ACTG1 SLC25A22 PRKACB GPCPD1 ABCG2 VEGFA SLC9A1 CORO2B MYL6 SNX3 DUSP1 BHLHE40 SPOCK2 TCEB2 SOD1 PLAC9 RPS4X HINT1 TMEM164 MTUS1 PREPL ITGB5 LSR NCDN RAB11A GGT5 FOXC1 GRM8 SLC38A5 TRPV2 ZNF385A NREP PELI2 NDUFA4L2 ITM2C TOMM20 ERH RND3 NRIP3 RNF208 GSTO1 SYT11 NOTCH3 RBX1 HEG1 PPP2R4 RPS19BP1 RNASE1 CHP1 TM4SF1 TIMP3 POU3F1 CPE SLC7A5 CDH5 NFE2L1 PSAP ATP5F1 RP11-195F19.5 ADAM33 TXN NDRG4 MSMO1 LRRC32 MRPL47 SLC6A1 UBC MRPS7 RPL10A ZIC1 IGFBP7 CRIP2 SPARCL1 PLSCR1 MT1E ALDOC SSPN CCND1 FKBP4 ACTB ARHGDIA IGFBP6 RAB3C TRPC3 B3GNT1 NGFRAP1 NDUFA4 GMPR TRIL TCEB1 MT2A GNG11 SARAF ENOPH1 RPL31 TF RPS10 RNASEK-C17ORF49 TUBB PCDHAC1 PCDHA9 PCDHA10 PCDHA4\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "endothelial cell" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MT-ND2 MT-CO3 MT-CO1 MT-ND4 RPL13A MT-ND3 NDUFB3 PSAP TMSB4X MT-ATP6 RPL26 MT-CO2 VWF RPS27A SDPR MT-CYB NDUFA13 MT-ND1 SPOCK2 IGFBP7 ACTG1 RPS10 NDUFA1 RPS3A RPS28 PTMA BSG MTUS1 ITM2A RPL35 RPS12 ID1 MAP4 RPL39 ATP1A2 RPL32 SRGN RPS6 ITM2C ALDH1A1 RAB2A RPL31 TM4SF1 FTH1 CD63 CYSLTR2 RAB11A PRTG MAPRE3 NOTCH3 CTSD UCHL1 KLHL5 CTNNB1 MYL6 CCL27 BTNL9 MT1M PTN ZFP36L1 SYNJ1 SAMM50 CHGB TSPYL1 GNAQ B2M FLT1 EFCC1 RPL37A ATP5F1 POMP UBL5 IL13RA1 VPS35 ITM2B NDUFA4 PIN1 ETFB HIF3A CLDN5 GUK1 NDUFA2 GADD45GIP1 NDUFS5 TPT1 RNF11 PRKAR1B SERINC3 ARHGAP35 ACSL5 MRAS RPL6 DNM3 CHN1 A2M GPCPD1 RABAC1 PHB TBCB DYNLRB1 GGT5 DKK3 IFI44L PSD3 ATP5J PECAM1 PPP2CA RAB3B RPL15 HSPB1 NDRG2 MT-ND5 GNG11 YBX3 C12ORF57 ZBTB20 PSMA7 TNFRSF11B MT-ND4L SLC25A6 WNT4 MT1E BCKDK TMA7 SCAND1 RASGRF2 SLC17A7 CALM3 SLCO2B1 ATP5E ACTB PPP2CB NDUFA5 SEMA5A CORO1B MTRNR2L1 C6ORF1 PHLDB2 SLC7A5 SERINC1 ATP6AP2 GMPR GMFB RPL8 CYP1B1 RGS5 MRPL20 EPAS1 DACH1 MT2A TMEM88 SAP18 ASAP1 PTGDS C1S CPE TSC22D1 CD99L2 TIMP3 PPDPF SLC7A1 SYTL2 APLP2 EFEMP1 TCEB2 MTCH1 S100A6 UBA1 DDR2 FAM43A MFSD2A S1PR1 GOLIM4 ARFGAP2 RPL17-C18ORF32 RPL41 MTRNR2L6 ATP1A3 BSCL2 NR1I3 IFI27 C18ORF32 PCDHGA5 PCDHGA10 PCDHGA6\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "endothelial cell" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MT-CO1 MT-ND3 B2M MT-CO3 MT-ND4 MT-ATP6 MT-ND2 RPS28 MT2A MT-ND1 MT-CO2 RPL13 MT-CYB GRP BSG MTRNR2L1 PTN RPL6 CD63 PECAM1 NOTCH3 TIMP3 SKP1 LGALS1 VWF CCT5 LZTS1 TMSB4X ACTG1 FTL PODXL ATP5I RASSF8 IFITM3 RP11-357G3.2 SNCG DNAJC4 MFSD2A ATP1A2 ISG15 MRVI1 MTUS1 LAMTOR1 ATP2B4 ZIC2 RPS6 TMA7 GAP43 PARP9 SLC25A6 AVPR1A SYT11 ATP2A2 ARPP19 MZT2B UBL5 RGS4 PRDX1 FXYD6 TGM2 EGFL7 IGF2 SPOCK2 MED10 DNAJB6 IGFBP7 GPX4 SLC7A5 CLTB GUCY1A3 A2M PTGDS RPL36A TTYH2 DPY30 RASGRF2 CRIP2 OST4 KLC1 CD59 NDRG2 EPAS1 RAB11A IFI27 HSPB1 TSC22D1 CALM1 MYL6 SLC2A1 RP11-20I23.1 C12ORF57 PSMD12 COX7A2 SLC25A5 STMN3 EIF1 FKBP7 C6ORF1 CPNE8 NTN4 KLHL5 ZMAT2 VGF PEA15 SNAP25 RAN SERPINI1 UQCR11 HLA-B ATP1A3 ZIC4 SLC6A13 WLS PPA1 ATP6V0C CD99L2 CLIP3 CHP1 COX6A1 CSPG4 TUBA1A CHN1 COX7C SEPW1 TMEM123 VAMP2 TNS1 PREPL ARL6IP5 RABAC1 MAPK8IP2 PRNP SRGN RPL15 ATP5F1 GSTO1 LMO2 NDUFB4 ABCG2 SYPL1 RPL38 C19ORF70 CLDN5 NDFIP1 SARAF PITHD1 C1ORF52 SLC6A1 CALM2 COL5A2 ITM2A NAA38 GRM3 PRDX3 MYCT1 SYT1 SERF2 NDUFS6 UBC MORF4L1 SELENBP1 CCDC141 ZFP36L2 CHL1 APP APOD SPARCL1 SCG2 RP11-632C17__A.1 PLD3 MTRNR2L8 DYNLL1 STOM MTATP6P1 RPS26 GPM6A TMSB10 RPL26 ATP6V1A THOC7 FTH1 KCNC3 KANK3 ARHGAP29 PSMB7 IDS NR1I3 ALDOA PTMA TF MIF DNAJC21 TBC1D15\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "endothelial cell" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MT-CO1 MT-CO3 MT-CO2 MTRNR2L12 MT-ND4 MT-ND2 TMSB10 XAF1 MT-ND3 COX6C ATP5I SERF2 LGALS1 NDUFA4L2 CYFIP2 RPS27A MT-ND1 TMSB4X MT-CYB MT-ATP6 ATP1A2 MT-ND4L GGT5 SPARCL1 RPS15 EDF1 RPS26 MTRNR2L1 RPS6 PTGDS SLC7A5 PTMA ATOX1 SPARC NFIA MDH1 RPS3A HIGD1B ZIC1 IFI44L HSPE1 GPR116 LPAR6 ACTB GNG11 ENO2 EPAS1 AGT MT2A PCDHGA5 IFITM2 RPL11 FRZB TF TMA7 RPL3 CHN1 CLTC SYNJ1 YWHAZ S100A13 OCIAD1 PGK1 MFSD2A RPS4X RPS12 ALPL TIMP3 MT1F SEPW1 DPYSL2 TUBB4A BTBD11 RPL12 PRKACB MT-ND5 TUBD1 CD59 TANC1 VWA1 TXN PNMA1 MYL6 COX4I1 CSDE1 LBH CALM1 TPT1 PPA1 HNRNPH2 SRGN GUK1 ZFP36L1 DCTN1 MIR6723 PHPT1 P2RY14 TMEM88 LSR RPS10 ANXA6 GEM YBX3 ETFB TMSB4XP4 PARP14 RPL23A SLC17A7 HOMER1 MARCKS MAP2K2 LCN1 DSTN COX5B ACTG1 PRDX1 PNKP CALM2 ANXA7 METTL7A NDUFA1 MLF2 VAMP5 UBL5 NDUFB2 ARPC4 TLE4 AURKAIP1 B2M MFN2 ERBB3 RPS28 RHOB CCK CLIC5 ZNF503 POLR2I TMEM51 HLA-B SLC7A1 QDPR ADAM33 NDUFA2 UQCR11 UQCRC2 MGST3 PLSCR1 CPNE2 ITM2B TNS1 BSG EMCN ADORA2B C7ORF50 ATP5E RPL21 COL5A3 DUSP6 TM4SF18 YWHAH PPP2CB RAB3B MRPL12 MYEOV2 CPE FAM127A RPL41 FOXQ1 SOD1 EBF1 RGS5 GNB1 GPM6A MTRNR2L8 SEPP1 RPL31 NUDT4 RPL17 YAF2 RGCC MT1M SLC25A6 PPDPF PREX2 TMEM59L SLC6A1 NDUFB4 COL6A1 SPOCK2 FTH1 NBL1 PINK1 PPIA OST4 RAMP2 ARHGAP35 CLIC4 SYT11 KANK3 NDN SUMO1 OPA1 ANXA4 ANAPC11 TMTC1 CHCHD2 WASL VWF LMCD1 ETS2 GPCPD1 DCN UBA1 NDUFA13 SELM NDUFB10 VWA2 BLOC1S1 ARPC5L DLC1 MIF OR6D1P NSF IFITM1 RNASEK-C17ORF49 MTRNR2L6 ATP5O IDS RPL13A\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "endothelial cell" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MT-CO2 MTRNR2L1 HSP90AA1 MT-CO3 MT-CO1 ACTB B2M EBF1 RPS28 CALM2 ITM2B SERF2 PRKAR1A FOS BSG MFSD2A EVA1B ACACB FTL RPL13 ETV1 MAF MTRNR2L6 TMSB4X SLC6A1 GPR116 KLF2 CLDN5 IGFBP7 FLT1 SRGN CYP1B1 SLC2A1 PDGFRB TPD52 MS4A7 HBA2 RGS5 HSPE1 SOX18 EIF4A2 C1D YBX3 FOXC1 MT2A MYL12B CRIM1 NFIA DCN DUSP1 NR2F2 OAZ1 RAB13 MT-ND4L ATP5B CLEC14A ENO1 RPS5 HPRT1 BGN ATP10A RAP2A RPL37A NR4A2 ATP2A2 HDAC1 GABARAPL1 TSPYL1 RPS2 NHP2L1 PDCD5 BAALC IL13RA1 CLDND1 SCN3B DNAH11 CTBP1 CTSD CCDC25 ATP6V1G1 MYO1B ARF3 ENG CYB5R3 UBE2E3 SRP9 MT-CYB PRDM1 ACLY S100A6 ADIRF CSPG4 TIMP3 PODXL MTRNR2L8 PTK2B SLCO1C1 TMA7 PLD3 TXNDC17 DNAJB6 ITM2A CLU LCP2 EIF1B EXTL2 ATP5I OPCML ADAMTS1 MORF4L1 ATP2B2 ADAM33 ITM2C TMX4 PDK4 PITPNA ZBTB20 FOXQ1 EGR1 TUBA1B CDK5R2 CCM2L MTUS1 COX17 VIM HIGD1B SLC7A1 GHITM WLS PTRF PTN ZNF503 SLC1A3 ATP1A1 TOLLIP TPT1 RPL6 ENSA ETS2 RELN SLC7A5 F3 NR4A1 LANCL1 MTRNR2L12 ATP5E NEUROD6 EDF1 SIPA1 MZT2B LMO2 FRMD4B EGFL7 POLR2L FAM3C GUK1 RASGRF2 PRDX5 TBX2 CDK17 RP11-175B9.2 OLFML2A TMSB10 COL6A2 VAMP2 MT-ND2 ARHGAP29 SYT17 UBC IGF2 LAMA3 COX6A1 MT-ND3 LCAT RNA5-8SP6 YWHAB STOM SLC38A11 COBLL1 EMP1 LPPR4 GRIP2 APLP1 CKS2 RAMP2 CCND1 FAM43A DPYSL2 GYG1 POLR2I FARSA SLC19A1 ELOVL7 DKK3 FTH1 EDNRA TMEM150C PREX2 KITLG ISCA1 RNF152 TNFSF10 NDUFA2 SLC6A12 VAMP5 MAP2K2 RPL11 SLC26A10 GABARAP CFH IFI27 RNASEK-C17ORF49 DNAJC21 TBC1D15 RPL13A RP11-219A15.1 HNRNPA1P40 PLEKHD1 RAB3B ZNF385D SYTL2 ESCO2 ARFGAP2\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "endothelial cell" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: TMSB10 TMSB4X ACTB CLDN5 MT-CO2 MTRNR2L1 MT-ND3 RPS28 FLT1 MT-CO3 NOTCH3 MT2A RPL35 SLC2A1 VWF FOS RPL3 RPL21 RPS26 IFITM3 IFITM1 DUSP1 B2M UBC JUN EIF1 RGS5 CALM2 BSG CFL1 GPCPD1 SLC7A5 SLC38A5 NBL1 MLF2 RPL13 MTRNR2L6 PTMA CASP7 COX4I2 GAPDH SLC39A10 ATP1A2 PGK1 PJA2 SEPW1 MT-CYB CYB5R3 SUMO3 IFI27 MT1M MT-CO1 ATP6AP1 TBC1D15 SYTL2 CALM1 ISG15 FTH1 PARP14 PRX RPL8 NHP2L1 IGFBP7 COX7C RPS10 EPAS1 IFITM2 IMMP1L KLHL5 ID1 RPL23A CD63 RABAC1 HSP90AB1 RPL41 ACTG1 PVRL2 HIGD1B MT-ND1 PPP1R14A MT-ND4 NGFRAP1 MT-ND2 LRRC32 TTN S100A13 RAB3IP SRP14 ZFP36L1 CRIP2 SPTBN1 ABCG2 PPDPF TUBA1B KLF2 ZBTB20 SLC7A1 RARRES3 TIMP3 CD99L2 RTN4 SOD1 PTRF SLC6A1 TMEM51 LMCD1 MAP4 SLC6A13 HIC1 RNF181 GPER1 ATP5E DLC1 SOX18 ITM2A TPT1 PRDM1 UBB IFI6 TMEM123 DNAJC21 RAB3B HNRNPA1P40 TGFBR2 SLC19A1 MT-ATP6 RAMP2 MRPS21 MFSD6 NDUFA1 LBH VEGFA P2RY14 STOM AES TMA7 PSAP PLD3 HEG1 ENPP2 ATP1B2 SLC1A3 PAFAH1B2 PELI3 CALCRL STMN4 DCTN1 PPIA CLEC14A GPR133 PEBP1 GPR116 PTN ANXA4 CD59 NDUFAF3 CNTN1 RELL1 RAB11FIP5 RNF152 RPL18A DCDC1 LCN1 RAB11A VSNL1 PRRX1 COX5A PLSCR1 ETV1 C7ORF50 ISCA1 PGRMC1 NAP1L2 CD9 COX4I1 VAMP2 AP2B1 GHITM LMO2 HBA2 RP11-111M22.2 PREX2 ATP6V0B GADD45GIP1 LDHB RASSF8 NDUFB1 LGALS1 POMP PLEKHG3 PDE9A PRNP TSC22D1 NDUFA12 CTGF NDUFB2 ARHGAP42 APBB1 TCN2 GRM3 CHMP5 PRTG KANK3 C10ORF54 PLTP ARL6IP5 ENG GPX4 FSCN1 LMO3 EXTL2 C10ORF10 FAM134A DYNLT3 NUDT13 MAF MFSD2A CAPZA2 CPED1 GATA2 COX6C TRPC3 EGFL7 TGOLN2 TXNIP PSMA7 LAMA4 DCN PHPT1 IFI44L FLOT2 HEBP2 COX6B1 RHOA SALL1 SIPA1 S100A16 PHF11 FKBP1A CST3 UQCRHL PRKAR1A ARPC4 GGT5 ADIRF VAMP5 HINT1 MTRNR2L12 IL3RA S100A10 IL4R OPA1 C16ORF13 UROD PSMB5 ZIC2 NDUFA4 SHE NFIA COBLL1 GNB1 RNASE1 NAA38 SERINC1 NDN RANBP3L COX8A EIF4A2 CRIM1 ALDOC ELMO1 FAM3C ATP5I GRINA RILPL2 CTSD MECOM STK24 TM2D3 LSR ATRN RPL32 PPAP2B DNM3 ANAPC11 TRAPPC1 TCEB2 HSPB1 POLR2L CDS1 RPS15 MFGE8 CCDC85B C14ORF132 RPS12 MBP SERF2 RNASEK-C17ORF49 COX6A1 WDR47 VWA1 CCDC124 CLDND2 MYO10 RGCC BST2 NOP10 YWHAZ SEMA3G LAMA2 UBE2L6 RHOC EFHD2 GNG11 FTL FRMD4B PTGDS CA4 ATP6V1C1 TMOD2 ZFP36 RPL37A MT1E TMEM150C MYL6 SEMA4G RPL6 ISCU PHLDB2 TPRG1L SPCS2 SPARC ATP6V1G1 CKS2 NDRG2 GNG12 RPL38 COMMD6 CDH13 SOCS3 MED10 TGM2 ARL8A MGST3 TPD52 PRELID1 RPS4X CDC37 PRKD2 MT-ND5 ETS2 SYPL1 SERINC3 MRPL55 TPGS2 OAZ1 TGFB1I1 TRIB2 DAB2 KIFAP3 HNRNPH2 NCOA4 LCP2 CFI HLA-B TUBB3 GABARAP CFH C11ORF31 MIF PCDHAC1 PCDHA4 PCDHA10 PCDHA9\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "endothelial cell" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: ADIRF RPL41 MT-CYB NOTCH3 HSP90AA1 EGFL7 MTRNR2L12 MTRNR2L8 PDGFRB MT-ND2 JUND PRKAR1A CALM2 SERINC1 SDPR PALD1 SPOCK2 HIGD1B RPL37A SLC6A1 SLC38A5 MT-ND4 KLF2 CPE SLC6A12 RGS5 MTRNR2L1 FLT1 MTUS1 ABCG2 RP11-111M22.2 SLC2A1 MT-ND3 DUSP1 PODXL BSG TXNIP RLIM MT-CO1 MT-ATP6 ACTB PPTC7 TSC22D1 MAFB MTND2P28 LPPR4 GABARAPL2 MZT2B HINT1 SIPA1 SEMA3B CAV1 TGOLN2 ZFP36L1 EID1 MTATP6P1 ZNF703 CLMN ZBTB20 POMP FAT1 PTMA ZFAND5 FTH1 APOLD1 RHOB ELTD1 SYTL2 SNAP25 CYCS TBCB MTPN RPL13 EDNRB A2M COPS8 MYCT1 ENG CLTA FOXQ1 CISD1 SEMA5A UBA52 YWHAH ASAP2 ARPP19 ATP5B SERPINE2 CLDN5 PRPS1 PDE3A MT-CO3 RPL8 MAF NOTCH1 MT-CO2 PROM1 GPR116 SNAP91 ETS2 SSBP3 TOMM7 COX7B TMTC1 CD63 WFS1 SOX18 HNRNPH2 NTN4 LHFP TUBD1 KANK3 CTSD TMSB4X LDHB NBL1 LMO4 ID1 SLC19A1 MT2A RTKN PSMD8 GLUL PEA15 RPS19BP1 SEMA3G VSNL1 STUB1 HSPB1 P2RY14 SARAF RNF208 TRMT112 FOS AP1S1 GUCY1B3 IL13RA1 SPARCL1 BTNL9 TLE4 IFI35 SLC6A13 ATP6V1A RPL26 HIC1 S1PR1 NDUFS6 CDC14A ATP10A SLC39A10 ACACB SRGN LLGL2 MT-ND1 TUBA1B ATPAF1 ACTL6A RELL1 PRKCH ATP5G1 GPR133 SPCS2 ARL6IP1 UBA1 CCDC124 EDN1 KLC1 RPL3 KCTD12 RPS15 MIF RP11-219A15.1 RPL13A AC244489.1\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "endothelial cell" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: CLDN5 TMSB10 SLC7A1 MT-CO1 TMSB4X MT-ND4 DUSP1 BSG MT-ATP6 MT-CO2 MTRNR2L1 RGS5 SLC2A1 HES1 MT-CO3 TSC22D1 HIGD1B ID1 PTMA EPAS1 EGFL7 UQCR11 A2M COX4I1 MT2A SPOCK2 ADIRF RPS28 FLT1 CALM1 IGFBP7 MT-ND3 MT-CYB FOXQ1 UBC NR4A1 SLC6A1 ABCB1 SLC38A5 ITM2A RPL13A VAMP5 KLF2 TIMP3 FOS ZBTB20 SPARCL1 IL13RA1 RPS10 JUNB MTRNR2L12 UBB RPL31 NFIA COBLL1 RPL13 MT-ND1 PKM CFL1 KLHL5 COX5B ACTB UBA52 HEG1 FTH1 FBXO8 SRGN SLC6A12 RPL3 PSMD8 MFSD2A RPS27A DLC1 KLF4 PODXL CD63 GAPDH TMA7 SPTBN1 HNRNPA1P40 RPL35 CAV1 SERF2 MECOM PIK3R1 SKP1 COX7C PSMC3 TSPAN4 AIF1L COX6B1 RPL37A TMEM123 CCDC85B IFITM3 ZNF503 ATP5B SLCO2B1 GPCPD1 GPER1 PINK1 IFITM2 PLEKHF1 LSR PMEPA1 RPL36A TXNIP IL6R ATP10A ZFP36L1 IFI6 OAZ1 EIF1 CPE MYLK2 CALM2 TCN2 GPR116 CLTC MTATP6P1 ZFP36 MYL6 RHOC CNTNAP3 APLP2 FTL CRIP2 SLC38A3 PPP1CB EMCN PRKCH UBA1 MTUS1 ST6GALNAC1 HLA-B ATP5I OLFML2A EIF1AX COX7A2 COX17 ITGB5 GNAQ GPX1 YAP1 RABAC1 RPS26 SLC19A3 UBL5 HSP90AA1 HSPA8 EDN1 MTRNR2L6 LEF1 MT-ND2 ELTD1 ALPL APOLD1 TOLLIP SLC7A5 CTSD ACTG1 ITM2B NDUFB3 USMG5 HSP90AB1 ABCG2 COX7B PROM1 BLOC1S1 RHOB IFI27 FKBP1A PDGFRB TM4SF1 CYB5R3 ARF1 RPL17 C18ORF32 RPL21 ATOH8 DYNLT3 MRPL37 NACC2 SERINC3 CDK17 DYNLL1 PTGDS PTPRT BHLHE40 RAB5C KIF5A PPDPF TRIB2 CHMP5 NRN1 TAGLN3 TUBB4B CADM3 DYNLL2 COX6A1 STXBP1 ARHGDIA RAN KLC1 RAB31 C6ORF1 LRRC32 ZFP36L2 PRNP NOTCH3 BST2 RNASE1 SULF1 CNTN1 RSL24D1 HSPB1 CYYR1 MACROD1 RPL39 CADPS2 PRDX3 CLIC4 SH3BGRL3 ST6GALNAC3 MAPKAPK2 TNFSF10 MGST3 CARD16 DCLK1 RPS12 SLC22A3 SMIM12 GNB1 RTN3 RPL10A CYSLTR2 GLUL C11ORF31 SAP18 BRK1 MRPL33 SOD1 TMOD2 LINC00116 NDUFB1 MRPL52 DCTN3 ATP1A2 ATP5J SEMA3G FGF12 TUSC2 ID2 SEMA5A NDUFB4 C1ORF52 CDH5 DDR2 ROBO3 CCDC68 ACTR1A RPS15 KRTCAP3 RPS6 RPL8 SEC61G TALDO1 BTNL9 PRKAR1A CTNNB1 MAP1LC3B SAMM50 MT1E FAM107B MZT2B THOC7 LYN PPP1R14A MT1M CCDC141 PCBP1 CLMN SOX18 NDUFB7 NOTCH1 ISG15 PREX2 LAMA3 FAM3C OSMR TBR1 MYO1B ATP6AP1 ATP1A3 SARAF ENSA SPARC HIC1 CDKN2AIPNL ATP5E DLD SLC39A10 CASP7 EBF1 PIN1 ENO2 ALKBH7 TPT1 DNAJA1 TRAPPC1 RPL23A AES CHI3L1 MMP24-AS1 EPS8 SRP14 RPL15 ZMAT2 RFX8 SGK223 GPR37L1 SNCG CCM2L CST3 TIMP1 C19ORF53 ARHGAP29 ANXA3 MAP4 ENG CSDE1 MAPK1 UTRN S100A6 ZIC1 SYT11 RPS4X GUCY1A3 PEA15 SNX10 MAGED2 CA2 HOMER1 MLF2 IFITM1 RPL26 EDNRB ITGA6 GOT1 GNG11 PRX NDUFA4 CA4 JUND CORO1B CRIM1 FAM69C TTYH2 RPL41 VWF TOPORS-AS1 EDF1 REEP5 MYEOV2 TM2D3 C9ORF16 C10ORF10 PHLDB2 IFI44L FOXC1 TSPAN7 CLU FIS1 YBX3 SIGIRR FAM89A UQCRB CDC14A NDUFA4L2 VDAC2 PTN WWTR1 FAM127A LPAR6 SLC25A6 PTRF SYN1 ISCU IFI35 ANK1 CTDSP1 NR4A2 CKLF TAGLN2 AHNAK DACH1 XAF1 LAMA2 AP2B1 PFN1 EIF4G2 CAPZA2 NDUFA2 TPD52 MAP1B UQCRH CDCA8 TSC22D4 ELOVL7 OXR1 PPIA RPL11 NEK7 ITM2C CHN1 AP2M1 PARP14 SCN1B GRP DYNLRB1 BAG4 C12ORF57 TANC1 EDNRA CCND1 RP11-195F19.5 EGR1 SPCS2 LATS2 POMP FBXL15 GADD45B MTPN ALDOA NGRN CD59 MIF RPS3A RPL17-C18ORF32\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "endothelial cell" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MTRNR2L1 MTRNR2L12 MTRNR2L6 MT-ND3 MTRNR2L8 FOS DUSP1 RNF11 RPS15 NR4A1 MT-CO1 TSC22D1 TBX18 MT-ATP6 MT-CYB ZBTB20 MT-CO2 TIMP3 HSP90AB1 TMSB4X MT-ND2 GPR4 KLF2 SLC6A1 MTATP6P1 PDGFRB CRISPLD2 TBX2 SERINC3 TUBA1B CPE FBLN2 PTN APP MT-CO3 TMSB10 RPL32 RPL3 MT-ND4 B2M MT-ND1 UBC C1S EIF1AX KLF4 BCAP31 RAB3B NR1I3 FOXC1 GABARAPL1 ZNF319 PLSCR1 TXN GEM WASF1 SPARCL1 TMTC1 AHNAK RBM20 KIAA1755 CRIM1 COMMD6 LAMA4 VSNL1 ARL4D HBA1 DYNLL1 PTGDS ABCB1 GHITM MFSD6 ZFP36 EGR1 RPS12 A2M POLD1 RLIM FAM43A ACTR6 CEND1 HLA-B SHC4 CTNNB1 RTN1 RPL7 MT1E MAP4 TSPYL5 SOX4 JUNB APOD USMG5 PPP2R1A RAB34 GOLIM4 HEY1 YWHAQ SPTBN1 COL6A1 CASP4 NDRG2 ADAM33 NR4A2 LGALS1 GPR116 PGM2L1 NDFIP1 SIRPA ELTD1 MAP1B ARHGAP29 ARFGAP2 TXNIP SERF2 ATP5I RPH3A SLC38A11 CDH5 CLU MT2A HSPA2 COL12A1 SEPW1 PLAC9 ETFB GTF2B STAB1 GAP43 GPNMB EMP1 CLPTM1 GPR133 IFITM3 FOXQ1 EIF1B HSPB1 PDLIM5 ABCA8 CYBRD1 AEBP1 HES1 GAD2 C10ORF10 CTGF NDUFS6 PEA15 TIMP2 UBA52 SLC40A1 TPT1 S100A6 CAPZB PREPL SYN2 LRRC32 EPAS1 GPM6A DCN EGFL7 ATP6V1B2 NDFIP2 TOMM7 VAMP2 MTG1 TSPYL1 NUDT21 UQCRQ RPL13A NDUFA4 GPX3 EPS8 CCND1 PLD3 ARHGDIA COX14 SCAND1 NID1 RPL35 JUND S100A10 ARF5 IDS PLEKHD1 HNRNPA1P40 CFH\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "endothelial cell" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MT2A TMSB10 TMSB4X CLDN5 RPS28 B2M BSG CX3CL1 MTRNR2L1 ACTB SERF2 CTGF GPCPD1 ITM2A SPARC PODXL MT-CO3 DUSP1 SLC7A5 EPAS1 ID1 PTRF SPARCL1 SLC6A12 RPL37A ITM2B RPS15 HSP90AA1 ALPL RPL41 KLF2 SYPL1 SLC2A1 A2M MT-CO2 SLC19A3 MFSD2A RPS3A GLUL IFI27 TAGLN2 ABCG2 POLR2L LPPR4 EDN1 CTNNB1 CDH5 PTMA TM4SF18 FTH1 PET100 EGFL7 YWHAZ MT1F CD59 MT-ND4 ICAM2 MTPN MT-CYB ANXA1 BST2 UTRN RELL1 EIF4G2 NAA38 TPGS2 MT-ATP6 RPL13 HIGD1B PTGES3 EBF1 COX7A1 SEPP1 RGS5 ZBTB18 TCN2 FLT1 TSC22D1 MYL6 SPOCK2 VIM COX6C RPL31 SLC39A10 LHFP ATP5E RAB11A NFIA OAZ1 ATP1A2 ST6GALNAC1 QKI UBB SIPA1 C10ORF10 MT-CO1 JUN EIF1 AHNAK MT-ND3 SHE RPL13A NDUFB1 HSPE1 MTRNR2L6 RPL15 VWF CYB5R3 RPL32 ETS1 ZNF503 TMEM204 NDUFA13 CREG2 UQCR11 SEPW1 VPS35 NDUFB8 EMP1 GPR116 TXNIP ACTG1 APOLD1 TNFSF10 SPTBN1 GSTP1 HDLBP SLC19A1 SLC17A7 DNAJA1 PALD1 SERINC1 APLP2 PRDX1 NDUFC1 C4ORF3 CAPZB GHITM DMKN TMEM179B IFITM2 SLC24A2 C10ORF54 LPAR6 MRPL55 RHOB RBPMS2 NDUFA4 YWHAH AXL COBLL1 HES1 HOPX S1PR1 POLR2J ANGPTL4 LEF1 TIMP3 IL13RA1 FOXQ1 SH3GL2 CALM2 SLCO2A1 VDAC1 UBA52 MPO FAM229A STOM FTL HLA-B TLE4 PSENEN MIF DPYSL2 GPR56 TMEM11 SCD SMIM3 NDFIP2 EPS8 UBE2L6 ANAPC13 RPL36A PSMD2 CAMK2G YAP1 GABARAPL2 NEK7 TUBB6 PKM SNRPN TCEB1 PRUNE2 RPS27A TGFBR2 KLF4 TM4SF1 COX7C LGALS1 MFGE8 TPT1 FBLN2 ACP1 YWHAB CSDE1 ATP6V1E1 NDUFA4L2 C19ORF70 LAMA4 PVRL2 TUBB4B RPS5 ANAPC11 LAMTOR1 EIF1AX SAMM50 S100A10 PPP3CB PSAP RBM20 ARPC4 COX17 ATP5J RNF144B NECAB1 NAP1L2 NOP10 S100A13 SDPR PEA15 NDUFA1 SNCA EPHA6 PPDPF MTUS1 TMEM147 MARCKS GABARAPL1 HMGCS1 CFL2 JUND RPS6 PAFAH1B2 SDCBP ANXA6 ITGA6 ETFB MTATP6P1 TMA7 PSMD8 RTN4R GNAQ C1D PIP4K2A ITGB5 ESYT1 EVA1B LHX6 ZBTB20 HEG1 LSR GNG5 FOS SCAMP5 PAM FOXC1 ISOC1 MT1E ATP6AP1 CDR2L JUNB PPA1 SOD1 ISCU NR4A1 TUBA1A ATP5J2 EIF1B PECAM1 YBX3 ZFP36L1 SPATA13 EFR3A WASL MTRNR2L12 POMP PMP2 SLC38A5 MORF4L1 OLFML2A PRKAR1A ECM1 CPE RPL8 TSPO TPRG1L RAP2C MT1L SYNPO SSTR2 GPER1 RHOJ CHN1 PRKCDBP SNCG CALCRL FAM89A CAB39 ABCB1 RPH3A SH3BGRL3 CACNG3 TRMT112 NBL1 PELI2 HSPB1 CCT5 MAP2K2 IFITM3 CCDC141 CCDC61 VEGFA UBC PINK1 WLS COX14 PSMB7 CDC37 ISG15 SYTL2 ZNF385D RAB3B HNRNPA1P40 ARF5 NUDT21 IFITM1 SNAP25 NGRN RPL21 TUBD1 CAPZA2\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "endothelial cell" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: TMSB10 MTRNR2L1 PTMA TMSB4X IFI44L BSG UBC NOTCH3 MTRNR2L6 CD59 IFITM3 MT-ATP6 ABCB1 MT-CO2 ADIRF TSC22D1 RPL41 MFSD2A SLC2A1 B2M RPL15 HSP90AA1 RPS6 SPARC TOMM20 ISG15 AHNAK EPAS1 VIM MT-CO3 POMP ACTB ZFP36L1 NFIA CLDN5 ODF3B ITM2A COPG1 SARAF STXBP1 RGS5 RAN RPS28 PODXL DISC1 GAPDH CLIC4 IFI6 STOM PARP14 IFI27 EIF1 MRVI1 GSK3A NDUFS6 FLT1 JUND KLF2 DPYSL2 ATRN IFITM2 HOPX PCBP1 CLEC14A GNB1 ATP5E CALM1 CDK5R1 RARRES3 TXN SLC7A1 A2M GLO1 DUSP6 RAB3A UQCRH HIGD1B EFHD2 LAMA4 CPE SLC19A1 SDPR HSPA8 ABCA8 JUNB ZBTB20 ICAM2 TERF2IP PPP2R4 TGM2 LMO2 MTRNR2L12 CFL1 MT-CO1 GSTP1 RPL17P50 ADAM33 MT-ND2 TUBA1A COBLL1 RPL32 MT2A GADD45GIP1 MAGED2 FAM96B TAGLN2 SIGIRR S100A10 RPS5 SLC35B1 GUK1 SLC25A6 PPDPF PRKCE COX4I1 NDUFB11 TM4SF18 MTATP6P1 KIAA1755 PLOD2 NEK7 CCDC68 PDGFRB PTGES3 RTN1 ITM2B NDUFC2 OCIAD1 STK24 CPNE2 RTN4 CADPS2 MT-ND3 OXR1 MTPN EIF4A2 ATP11C SNRPE PPP3CA PPP2CB GUCY1A3 C1ORF56 TMOD2 EIF1AX PEBP1 MTND2P28 PRKACB RPL3 MRPL33 INPP5F TOMM7 B3GNT1 SIRPA RAB1A ID1 CDH5 PRKAR1A MYEOV2 NUAK1 SPATA13 NOP10 SLC9A1 SOCS3 MED10 TNFSF10 DYNLL2 TUBA1B COL5A3 NACC2 DCTN1 GPM6A EGR1 TSHZ2 PEG10 FRMD4B CST3 ITGA6 SERINC3 EVA1B C1D RPL35 RNF182 ABCG2 SPTBN1 APP FKBP1A ARF1 TTN KLC1 GNAQ REEP5 MAP1B SERINC1 SRP14 RPS27A FTH1 RHOB IL4R AES LINGO1 FAM111A ZNF385D SYTL2 RAB3B GABARAP MAP1LC3B IDS HNRNPA1P40 PLEKHD1\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "endothelial cell" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: FTL RPL13A RPL37A TMSB4X SPP1 RPL31 RPS27A RPL41 RPL23A RPL36A RPL35 TMSB10 RPS28 TUBA1B FTH1 RPS12 RPL11 RPS10 UBA52 PTMA RPL32 RPL3 RPL8 RPL26 RPS26 ATP5E GPX1 RPL6 RPL21 ACTB RPL7 GTF3A RPS15 RPS6 ARL6IP1 RPS5 COTL1 C3 RPL15 OAZ1 RPL12 MT-CO1 GLUL MT-CO3 COX6C TOMM7 NDUFB1 COMMD6 SNRPN MT-CO2 FIBP MAF RPL10A CLTC PPIA PPP2R1A SUMO3 COX6A1 MCM5 S100A8 GDI1 COX8A VAMP2 RPL38 KCTD12 SLC1A3 PFN1 C19ORF53 PMEPA1 MTRNR2L12 MT-ND4 LIG1 PET100 WFS1 TGOLN2 TMA7 ARFGAP2 ATP5I CALM1 CD63 YWHAH PGAM1 ETFB MT-ND4L RPS2 S100B CLSTN1 NFE2L1 RPS4X TBC1D15 COX5A GPR56 YWHAZ RPL39 TMX4 CST3 GNB1 STMN1 STOM MYL6 IDI1 ATP6V1C1 SERF2 UQCRB RAN GAPDH MMD SNRNP25 PCBP1 NAT8L EIF4A2 CDS1 HSP90AA1 MORF4L2 PRELID1 MAPKAPK2 LDHB KLHL5 C1QB MRPS7 UQCR11 PADI2 ATP6V1F PRKAR1A NDUFA13 RNASEK-C17ORF49 ZNF385D SYTL2 RAB3B ESCO2 CYB5R3\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "microglial cell" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: SPP1 MT-CO1 SNAP25 SYT1 MT-CO3 MT-ND4 CHN1 MT-ND3 MT-ND2 TMSB10 PPP3CA GAPDH RPL41 HSP90AA1 ANGPTL4 EPS15 VSNL1 PIK3R1 ATP6V1C1 CLSTN1 DYNLL1 CALM1 NRGN TSPAN7 FAIM2 CKB PGM2L1 FAM131B CADM2 DNM3 TUBB2A SNCA SLC24A2 SRP14 MT-CO2 SERINC1 SCOC RPL15 NRCAM TGOLN2 GLUL ACTB TUBA1B PAK1 PEBP1 KIF1A CALM2 NFATC2 GJA1 APLP2 SLC39A10 GAP43 SNCB HSP90AB1 SLIT1 CLU COX6A1 CA11 MTRNR2L12 PRKCB SPARCL1 CDK14 ABCC12 UQCRC1 ATP5I SLC25A6 PREPL CLTC NUAK1 CLSTN2 STMN2 CYCS ATP5E APBB1 SLC38A1 ATP1B1 SSPN PAFAH1B2 TMEM70 PPM1A JUN PDGFD EID1 NWD2 AZIN1 SCN1A ACTG1 MTHFS A2M PTGDS TPT1 HSPB1 DDAH1 RP11-195F19.5 EDF1 VAMP2 MT3 NTN4 SMIM1 ATP5J PPIF SCN1B NDUFAF2 EGFL7 NGFRAP1 ADAM28 PRKCE RPL36A SLC9A6 STX1A MLF2 C1QC CAPZB MAP1LC3A ZFAND5 UBE2L6 ATP1A1 ATP2B2 BEX1 FGFR3 SLC25A4 ALKBH7 COX7A2 APOE PRNP SUB1 NECAB1 SLC1A2 HOPX YWHAG COX5B GNAQ PRDX1 SDC4 ITFG1 COX6B1 SUMO2 LINGO1 RPL32 SLC17A7 EIF1 CDK5R1 ENO1 RPL12 HSPA4 FXYD7 MGST3 TUBA4A PACSIN1 TSPYL1 ATP5G2 CAPZA2 TXN GPR56 RPL37A TOX2 RPL13 UQCR10 HSPE1 IFI35 PPIA RORB DKK3 CADM3 EFHD2 TMEM258 GRIN1 CCDC124 REEP5 CSDE1 CPE MLLT11 SLC6A1 TUBA1A OPN3 GMFB TMSB4X WBP2 CCK TRIM47 KCNC2 MAP2K1 SAP18 PID1 PRKACB GSTP1 PPP2R1A UQCRC2 ERH LYN COX7C EPHA6 HPRT1 MTCH1 SOCS3 PLCB1 CPNE8 CDC42SE2 GDI1 ATP2A2 FAM163B DIRAS1 RTN1 DIO2 RPL39 FTL CD14 MAP1B KCNAB2 MAL2 ARL6IP5 CLDND1 PPP1CB NAT8L ATP5B ARF3 CTNND2 ITM2B RPL31 RHBDD2 OLFM1 C14ORF2 MT-CYB ENSA DNAJC6 CAMK2D TOX SMYD2 B3GALT2 PSD3 MT1X GABRA5 PGRMC1 IFITM1 FAM19A2 FXYD6 CTBP1 MYEOV2 GRIN2A GABARAPL1 AK5 NDUFA5 TMEM59L PARM1 CMPK1 ENO2 LPAR6 RPS3A PSAP ENC1 CALM3 CPLX2 APP ITGA6 ACOT7 LDOC1 MORF4L2 NCBP2-AS2 C18ORF32 PPP2R2B FBXO2 SLC30A3 MFSD6 UQCR11 TBC1D15 DNAJC21 SYTL2 B2M NGRN ALDOA SERF2 RAB3B RPL21 MIF RPL17-C18ORF32 RPL17 PCDHA10 PCDHA4 PCDHA9 PCDHAC1 PCDHGA5 PCDHGA10 PCDHGA6\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "microglial cell" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: CSF1R MTRNR2L12 ZFP36L2 FTL MT-CO3 ITGB2 ACTB MT-CYB ARHGAP24 RPL41 RPL37A CLTC APOC1 RPL35 RGS1 MT-CO1 C3 PARP14 EFCAB13 FCGR3A STAB1 MTRNR2L1 MT-CO2 IL6R CD14 MTRNR2L8 MTRNR2L6 TPT1 MT-ND4 CTSD TCEB2 PLSCR1 YWHAZ TUBB ITM2B RPL13A CTC-575D19.1 EPS8 LAMTOR5 WBP2 SRGN GSTP1 CALM2 RPL15 CD63 HAMP UBA1 PPIA C1QC COX17 TXNIP MT-ND2 SYT17 KCTD12 APEH RPS5 TGFBR2 ZBTB20 PSMB5 CHADL PSAP CD93 CMAHP BASP1 GIMAP4 SELT CISD1 NFIA ARL6IP5 TMSB4X MT-ATP6 UROD SYPL1 RPS27A RPL11 MT1F APOE MARCKS DOCK8 SYNJ1 RPL31 PLAUR C1QA ZFP36L1 MS4A7 PECAM1 ELMO1 MORF4L1 POLR2L NDUFA13 ZFP36 ALPK1 SLC40A1 PSMD2 SEZ6L2 ITFG1 IFI44L COX7C\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "microglial cell" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: FTL TMSB4X RPL37A RPL35 RPS28 RPS15 RPL13A RPL31 RPS6 ATP5G2 RPL41 ZFP36L1 TMSB10 HAMP FTH1 UQCRB GNLY RPS27A RPL11 RPL38 RPL23A SERF2 RPL17 RPL26 RPL12 RPL3 MS4A7 RPS5 GMFG S100A8 RPL8 RPS2 UQCRH RPL32 PTMA CHP1 COX7C UQCR11 FGL1 RPL10A SLCO2B1 A2M TUBA1B ATP5I RPL6 EDF1 ZFP36 C1ORF56 RPL39 CSRP1 PALD1 DYNLRB1 TRAPPC1 PCDHA4 LMO2 MRPS7 RPL18A BST2 MT-CO2 MT-CO1 DISC1 PGK1 TUBA1A LPAR6 MTRNR2L12 CD24 MAF PFDN4 RPL15 TMOD2 PGD WIPF1 RPS12 RPS19BP1 CALM3 UBE2D2 C4ORF3 RPL21 C1QB APOC1 GLIPR1L1 CLDND2 SPP1 POLR2L PFN1 IPCEF1 RPS4X MS4A4A PARP14 TERF2IP GNB1 ANAPC11 OAZ1 PSD3 MT-CYB SLC25A6 RPL13 GAPDH RAB11A SLC12A5 ITPR2 PCBP1 CBX6 PARP9 CAMK2D FKBP1A PET100 UBA52 RAB3B LAMTOR2 TM6SF1 DNAJC4 S100B APLP1 RNA5-8SP6 CDKN1A HSP90AA1 BEX4 RPL36A ANKRD20A11P GTF2B ACTB CCND1 OR6D1P STAB1 CTSD RPS3A IDS CFH\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "microglial cell" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: SNAP25 MTRNR2L1 SERINC1 MT-CO2 YWHAZ RPH3A ENC1 VSNL1 ARPP19 MT-CO1 MTRNR2L12 TMX4 CAMKK2 NPTX1 SNX10 NRGN ARPC4 NUAK1 ATP1B1 PPP3R1 LDB2 TSPYL4 CAPZB GPR26 KIF1A NDUFA13 SYNGR1 PCSK1N DUSP6 TMSB4X SNRPN RPL12 RP11-111M22.2 DYNLL2 CTSD PPP2R2C GAP43 DDN CHN1 EIF4A2 KRT17P6 PHYHIPL NDRG4 ATP5I INA CKB CMAS ALCAM PRKCB RPS15 LMO3 ATP6AP1 MT-CO3 UQCRC2 CALM1 NCAM2 ATP6V1A FAIM2 PFN2 VGF RHOB TOMM20 MT-ND4 LMO4 YWHAQ IPCEF1 PAMR1 LCAT KIFAP3 MYL6 TBR1 FNDC4 CTNNB1 TSC22D1 RLIM MT-CYB ATP2B2 MT-ND4L SCAMP5 EPHA6 PPP1CB CYP26B1 CSDE1 KIF5A COX7C ATP6V1F PEG10 RPL21 IDH3A EPB41L3 FSCN1 CTNNA2 PAK1 TPPP MTRNR2L6 ONECUT2 FASN PPP3CB KLHL12 NECAB1 MRAS TRIM37 UCHL1 CCK CALM2 KCNAB2 PLCB1 MT-ND3 PREPL HPX TSPAN7 CYFIP2 MTX3 SPRYD3 VSTM2L PTK2B SEPW1 NDUFB4 UQCR11 ATP5A1 RPS26 ARFGAP2 PCDHAC1 PCDHA9 PCDHA4 PCDHA10\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "mixed excitatory neuron" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MT-CO1 MT-CO2 MTRNR2L12 MT-CO3 MTRNR2L1 CHN1 MTRNR2L8 SNAP25 MT-ATP6 SPARCL1 TSPYL1 MT-ND4 CALM3 NRGN MTATP6P1 ENC1 CALM1 MT-CYB TCEB2 RPL35 NUAK1 ATP1B1 MTRNR2L6 MT-ND2 CPLX2 LMO4 CALM2 NCDN SARAF POLR2M PIK3R1 RTN4 PINK1 ARL6IP5 OST4 RPS15 PEX5L ACTB CLTC CDK5R1 CCK TSPYL4 MT-ND1 RTN1 STXBP1 AP3S1 MBOAT7 HOPX DPYSL2 VSNL1 ARL1 SYT1 YWHAZ SNCA SYTL2 TMX4 ARF3 HSP90AB1 FTH1 PPP3CA MT3 PEBP1 NHP2 BIRC5 PPP1R9B ZDHHC12 MAPK1 KLF10 TUBA1B CST3 CHL1 RTN3 TMEM151A ZFP36L1 EIF4A2 ID2 SLC17A7 COPS8 SLC7A8 PREPL SRP9 HDDC2 HMGCR ATP2B2 DUSP6 PPP3CB CBX6 YWHAG ATP5B MT-ND4L WARS ATP5J TMEM158 SNN PSMA7 NDFIP1 ATP1A2 BSN TUBA1A SYNGR1 GAPDH RPL15 SYT11 MAP7D1 MAP1B GNAQ NGFRAP1 ENO2 PCBP1 NDUFS6 YWHAH DNAJC5 LSM4 CAMKK2 TSPAN7 THY1 CNR1 PRKACB PHYHIPL NGEF PPP1CB SCN3B C2ORF80 CD59 RABAC1 STMN3 EIF1 PDP1 PPIA TPI1 NEFL NDRG4 OPCML PRUNE2 TSPAN4 MAPRE2 PPP3R1 ERBB4 BSG NFE2L1 TSC22D1 SUMO2 ABHD8 UCHL1 EIF1AX GABRA1 WSB2 CNTN1 MZT1 ARPP19 MRFAP1 GRIN1 DNAJB9 TPD52 SERF2 RPS4X WBP2 GPM6A LAMA2 ISCU PEA15 TMSB10 UQCR10 ANO3 RPL13 RAB40B LINGO1 TALDO1 CCDC121 CPLX1 NELL2 PCDH19 LRP1B SSBP3 HNRNPH2 SERINC3 TMEM130 LINC00087 FSCN1 SLC19A1 DHCR24 NFIA HIGD1B POMP SYT5 OXR1 NECAB1 UBQLN2 PAK1 UBE2V2 CA10 NAPB BASP1 CHCHD2 NRCAM SV2B OLFM1 PCDH8 DYNLL1 STX1A RGS4 PTN PRNP FAIM2 NDUFA4L2 SMAP2 RPL41 SLC39A3 TMEM59L CLSTN1 PJA2 PHYHIP BEX2 ELAVL4 NDUFS5 DDN MT-ND3 LDHB TUBB4A DCLK1 PFN2 RHEB TRHDE SYT13 NPTN RPS26 REEP2 DNAJA1 WBP11 SYNPO GSTT1 PDGFRB SGCD RAB3A RAB11A MTCH1 CD63 TMA7 RAB2A SERPINE2 ATOX1 MTND2P28 FKBP4 SNX10 GDI1 RAB3C RPL39 CAPNS1 HMP19 IDS RP11-219A15.1 TUBB3 GABARAP PLEKHD1 RPL17-C18ORF32 RPL17\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "mixed excitatory neuron" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: RAB3B RPL26 ATP1B1 CHN1 RPL38 ENC1 RPL36A NDUFA13 TMEM59L RPL13A TBC1D15 DNAJC21 LPPR4 CALM3 TUBA1B NRGN PTPRS SLC39A10 VAMP2 ACTB SEPW1 FAT3 RPL31 STMN1 RPL39 RPS15 SARAF OAZ1 PPP3CA RPS27A OR6D1P BEX2 CFL1 LMBRD2 UQCR10 UQCRB RAB6A COX5B MT-CO1 SNAP25 C7ORF50 FAM127A C14ORF2 CREG2 IDS HBG2 C1ORF233 RPL3 MAST3 PTGES3 EIF4G2 NDUFAF2 TUBB4A PPARGC1A SMAP2 KRAS NPTN GPR26 TCEAL5 NDUFA12 SLC9A6 POLR2I UROD SCN1A GUK1 TUBB4B UQCRFS1 SGK223 PRKACB ANXA6 SYT1 EDIL3 BRK1 ARL6IP5 ATP5J2 ARPP19 BNIP3 SRP14 SUCLA2 UQCRQ RPS6 CERS6 DPP6 MLF2 ATPAF1 RAD23B TMSB10 SSTR2 BLOC1S1 NECAB1 C2ORF74 THY1 GPX4 PLAC8L1 ATP2A2 OLFM1 ATP6V1B2 YWHAZ PDE1A RPL18A LMO4 RPL15 SERF2 RPL23A C9ORF16 RGS12 AP1S1 COX14 UROS TMTC1 NEK6 NGFRAP1 NEFL HMP19 MDH1 UBB NDFIP2 ARF5 GNAQ PSD3 YWHAH RPS28 C1ORF56 NPTX1 MMD TPT1 PPP3CB LDOC1 NDUFB7 COX6C SLITRK1 PGK1 RPL37A TPI1 CKB SMIM12 RTN3 CDC42SE2 HSP90AB1 PGM2L1 YWHAG GABARAP RPL17 NUDT21 RP11-219A15.1 RPL17-C18ORF32 RPL41 HNRNPA1P40 MIF PCDHA10 PCDHA4 PCDHAC1 PCDHA9 TF\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "mixed excitatory neuron" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MT-CO1 MT-ND3 SNAP25 BASP1 RTN4 CCK ATP1B1 MT-ND4 PPP3CA TSPAN7 MT-ND1 TOLLIP GPM6A RBX1 MT-CO2 OCIAD1 FTH1 YWHAH RPL31 NFIA ABHD14A DYNLL1 FAM84A CALM2 STMN1 MORF4L1 FTL ELMO1 RAB3B STRAP HSPA4 APLP1 CLSTN1 PNMAL1 PTMA PPM1A NEFL STXBP1 NHP2 PRKCE COX4I1 SH3GL2 STMN2 RGS4 TESPA1 STMN4 CALM1 CRIM1 MT-CO3 NDRG4 CNTN1 SPTBN1 SERPINI1 GABRA1 TRMT112 NRGN PSAP SNX10 RAB3C KRAS BEX2 NPTN SKP1 PRKCB SEPT4 ATP9A ATP6V0C HS6ST2 RNASEK-C17ORF49 RPS28 CLTC VDAC1 RPL26 SMYD2 SEPW1 NGFRAP1 MIR6723 TBCB TMEM132D RPL18A SNX3 MET ATP5G2 PDE1A MYL6 SCN1B ZBTB18 VSNL1 ATP6V1B2 SNCB COL5A3 TUBA4A DKK3 KLC1 MTPN ITM2B ANO3 OLA1 ACTG1 OAZ1 PRNP OAT NDUFB7 BSG STMN3 UBB YWHAZ FARSA NECAB1 MTG1 MORF4L2 FBXO2 ATP5J YWHAB PSD3 DCTN1 TMEM14A CFL1 CRIP2 CPE ID2 CKB GJB6 CHL1 SYT1 POLR2I ATP2B2 COX8A MT-CYB ENO2 SELT CTNND2 TMTC1 CDH13 GABRA5 SYNGR1 PRELID1 TSPYL1 SLC6A17 RPL13 SYNPR IDH3A RTN1 DDAH1 GLO1 MRAS DSTN TMOD2 SYNGR3 MAP2K1 GLRA3 MRFAP1 VEGFA ENO1 PDZRN4 SV2B ACTB TMSB4X WDR47 PPA1 BIRC5 RTN3 HMGCR GRIN1 PINK1 NAPB SERINC3 COX7A2L HIST1H2AC PSMB3 PTPRS HSP90AB1 SNCA DYNLT3 SUMO2 ARL8A NAP1L3 TSC22D1 ARL6IP5 CALB1 TOMM20 RAB6A NBL1 CA11 IFI6 EIF4A2 GTF3A MTRNR2L12 EIF1AX MAP1B TCEA2 TPRG1L TAGLN3 CADM2 RP11-20I23.1 TRIM37 ZNF880 RAB31 NDUFB11 FAIM2 GSKIP FIGN CREG2 ATP1A1 SYT4 OPN3 SLC24A2 KIF3C PARM1 ARPP19 RPL32 PREPL HNRNPA1P40 BSCL2 RPL41 TF DNAJC21 TBC1D15 RPL13A RPL21\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "mixed excitatory neuron" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MT-CO1 MT-CO3 SNAP25 TSPYL1 MT-CO2 PIK3R1 ARPP19 CALM2 TSC22D1 TUBA1B RTN4 ADD2 BEX1 CALM1 UQCRB MTRNR2L12 GLRA3 ENC1 ATP1B1 NRGN PCMT1 FTH1 CTNND2 SLC25A6 ATP9A DYNLRB1 ACTG1 MT-ND1 TMA7 DPYSL2 PEX5L NAPB BASP1 TCEA2 PKM RPL32 HMGCR HSP90AB1 PGK1 ATP2B2 MT-CYB PTK2B PRNP SERINC3 COX7B MAP1B FKBP1A APP EIF4A2 RPL12 OAZ1 RTN1 NPTXR NGFRAP1 NDFIP2 MAPK1 C9ORF16 CADM2 NAP1L3 AES SLC9A6 PRKACB UQCR11 MTRNR2L8 ATP1A3 BAD CLTC BANF1 PELI3 BEX2 NHP2L1 TUBB4A RAB11A VAMP2 C1QL2 CDK5R2 PGM2L1 APLP2 RPL36A PHPT1 DKK3 JAKMIP1 GABRA1 RAP2A RPL35 FAM3C RPS27A CTSD CBX6 ATP6V1C1 HPRT1 ARHGAP35 HMGCS1 STX1B HSPBP1 ARHGDIG CPLX2 EIF1AX RNF11 RAB7A ARHGDIA COX4I1 CADM3 REEP5 MBP OLFM1 DPP6 OR6D1P EPHB6 QDPR GDE1 RAB3B NUDT4 CSDE1 SUMO2 PPM1A SLC39A3 C14ORF132 SELT RAB3C GPATCH4 ATP5B ALCAM ARF5 SYNPO RPL13 TOLLIP YWHAZ C19ORF53 RAN CREG2 PRKCB NDUFA8 GPR158 FXYD6 HNRNPH2 HINT1 GAPDH PFN2 NDUFB1 GRIN1 GDI1 MSMO1 NCEH1 STMN3 FIS1 RPS4X YWHAQ ELOVL7 RPS15 DNAJB9 TM2D3 SLC22A17 NREP KIF1A SNCA NECAB1 DYNLL2 HOMER1 ATP2A2 MT-ND3 PIN1 CD63 LMO4 THY1 TSPAN7 CCDC25 NCDN SSBP3 SEZ6L MB21D2 BIRC5 ATP6V1B2 SNX3 MAP7D1 GRIN2A NEFL CAP2 TPPP NAA38 SLC17A7 CAPZA2 NIPA1 SLC6A17 ARF3 KLHL5 WASF1 RPL3 KIF3C PREPL TUBB2A TUBA4A CTNNA2 SCAMP5 ID2 COX8A GPM6A PSAP UCHL1 WBSCR17 SYT4 SULT4A1 NDUFA2 GRIK1 PPP3CA ENO2 CHL1 PPP2R2C NDUFA4 EFR3A BEX4 TKT SLC12A5 DIRAS1 SLC8A2 SARAF CADPS2 NNAT ATP6V1A YWHAG SERPINI1 C14ORF2 NDFIP1 TMEM130 CHN1 RPS26 INSIG1 CLSTN1 GDA CCK SYT1 PRKCE ITFG1 CDK5R1 DUSP2 LZTS1 H2AFZ RTN3 COA3 PNMA2 CPE DNAJC4 RPL39 APOLD1 RPL17-C18ORF32 C11ORF31 RPL17 PSMB3 TUBB PCDHA9 PCDHA4 PCDHAC1 PCDHA10 PCDHGA6 PCDHGA10 PCDHGA5\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "mixed excitatory neuron" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: SNAP25 MT-CO1 MT-CO3 CHN1 TMSB10 CCK DYNLL1 MT-CO2 SYT1 MAP1B FTH1 MT-ND3 TUBA1B ATP1B1 ACTG1 MARCKS ATP6V0E2 MT-ND2 CALM1 MTRNR2L1 RTN1 MT-ND4 JUND TBR1 ATP6V1A CAMKK2 TAGLN3 HSP90AA1 ATP2B2 DPYSL2 FKBP1A SPARCL1 ATP5E PFN2 SPOCK1 NAP1L3 THY1 SUB1 HPRT1 TMEM59L SERINC3 CREG2 YWHAB CLU ARF3 SYT11 BRK1 MT-ATP6 VSNL1 MT-ND1 ENO2 TMEM155 UBQLN2 C1ORF52 GNAQ NDUFA13 SYNPR RTN4 PRKCB RAB6B GAPDH GRINA RTN3 YWHAZ ENC1 LINGO1 PPIA YWHAG ARHGDIG IPCEF1 NPTXR MAPK1 CMAS PPP1CB TSPYL1 PLCB1 CLIP3 WDR47 TOLLIP ATP5I PRNP TMEM14A SERF2 NRGN CALM2 RPL31 ZFP36 KCNAB2 PGM2L1 PPP2R2B ARHGAP35 FKBP8 CTNNA2 RPL8 UBB NPTN OPA1 LL0XNC01-16G2.1 NPTX1 ENSA BASP1 GPR158 EXTL2 AHNAK2 SOD1 KLHDC3 PACSIN1 NGFRAP1 CEND1 EIF1AX EFHD2 MAP2K1 MTRNR2L6 GHITM SNAP91 USP5 CLSTN1 SDCBP AZIN1 SH3GL2 TPRG1L RPL35 ACTB PPFIBP2 EIF1B TPT1 FAM134A MFSD2A MZT2B BCAP31 TUBB4A SYN1 TUBA1A CCDC85B GPX4 TSPAN7 PSMC1 CDK14 YWHAQ EDIL3 CABP1 CLTA NELL2 SCOC UBA52 CAPZB CKS2 GADD45B ARL8B MAP1A GOLIM4 ATP9A NDUFS5 ACTR1A BSG STX1A RXFP1 RPS15 COX7C AP2M1 SLC24A2 RP11-111M22.2 SLC17A7 C7ORF50 PTPRS MRPL55 WSB2 RPL13 FAIM2 TBCA MTCH1 MRPL20 RASGRP1 AES HK1 PCDHA4 SNCA PLD3 SLC39A10 NEK7 DIRAS2 CERS6 KLC1 BAD PRDX5 GABARAPL1 SARAF NEUROD6 RNF208 MRPS21 MAPRE3 NUAK1 INSIG1 NEGR1 NBL1 KIF1A NKIRAS1 RPH3A CYFIP2 ATP5A1 DCLK1 RPL13A NDUFV1 BCAT1 EDF1 ARL6IP5 CD99L2 EGR1 GNG3 SCD CKB PEBP1 CNTN1 RAD23B SLC12A5 CAMK2G BEX4 PRKCE MAPK8IP2 WBSCR17 ATP6AP2 NECAB1 RPS27A RAB2A COPS8 APBB1 BNIP3 UBA1 UQCRH NDUFAF3 NDRG4 CDK17 COPG1 GUCY1B3 FBXW11 CCT5 RPL37A SRP14 LMO4 SCN1B KLHL12 ATP1A2 HS3ST4 TUBA4A VDAC3 SLC1A2 GDI1 ATP6V1B2 SNX3 TCEB1 COL24A1 ATP1A1 GPM6A USMG5 VDAC1 CDK5R2 MIF PFN1 RPL10A FIGN COQ10B PSMD8 PNKD RPL6 ATP6V1E1 COX7A2L RAP2C LGALS1 FAM229A RPS19BP1 UHMK1 RPL12 DYNLT3 AK5 RELN STMN4 ARPP19 CADPS2 C9ORF16 POLR2I SPCS2 PNMA2 SLC9A6 SPOCK2 LPPR4 AP1S1 GMFB PCMT1 COX5B REEP2 MYL6 CADM2 PPM1A TERF2IP HSP90AB1 MTPN ELAVL4 SMIM13 MT-ND4L WBP2 PPP2R2C C19ORF53 ZFAND5 PET100 FABP3 PIK3R1 NDUFB2 CALM3 POLR2L SKAP2 RPL41 IDS RNASEK-C17ORF49 ATP6V0C RP11-20I23.1 NUDT4 RPL21\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "mixed excitatory neuron" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: RAB3B RPL37A SEPW1 RPL11 JUND UQCRC1 TLE4 RPL32 RP11-111M22.2 SPTBN1 MT-CO1 RTN3 ARF3 PRKACB RPL36A RPS27A BIRC5 SNAP25 TUBA1B PSAP NRGN RPL38 RPL21 ATP1B1 SPARCL1 KLC1 PDCD5 MAP1B SEPT4 VSNL1 RAP1GDS1 RASGRF1 CHGB TIGD4 TERF2IP CDC37 MORF4L2 THY1 PPIA AP2B1 PTPRN CDK5R1 UQCRFS1 RPL10A ATP2A2 SV2B RPL23A ATP13A4 KCNAB2 WBSCR17 ATP5I DDR2 SCD CRYAB POMP PRNP CLU RPS6 CACNB1 SLC25A22 PPP2R2C BEX1 TPT1 LAMTOR1 FABP3 RPL35 ENC1 CHN1 UQCR10 DSTN TENM1 WBP2 RBX1 UBE2QL1 NDUFB7 TSPYL1 USP5 CALM2 ATP1A3 RPL41 NRCAM SYT1 TUBB4B NDUFB8 PPP3R1 CAMK2D YWHAZ SELT PLD3 USMG5 HTR7P1 ATP6V1F NDUFS5 FTH1 VIM SEMA3C TRAPPC1 SLC17A7 ARF5 NGFRAP1 TUBB2A UQCRH PRKCB PPP2R4 ITPR2 ANLN HIST1H2AC ATP6AP1 C1ORF56 SCN3B RGS4 C2ORF80 SUB1 CALM1 SYNPO RTBDN MFSD6 DNAJC6 NDRG4 SYT11 COPE GABRA1 C6ORF1 HSP90AA1 CNR1 TUBB4A UBE2D2 UBE2E3 UQCRB GUK1 MAP1LC3A ARHGDIA NPTX1 YWHAQ YWHAH SH3GL2 RPS15 PPP3CA RPL31 ATP6V0C RP11-20I23.1 TUBB3 IDS RPL13A CYB5R3 PCDHGA5 PCDHGA10 PCDHGA6 ARFGAP2 SYTL2 ZNF385D HNRNPA1P40\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "mixed excitatory neuron" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MT-CO3 MT-ND2 MT-ND3 MT-CO1 MT-CO2 MT-ND4 MT-ND1 MT-ATP6 MTRNR2L12 SNAP25 MT-CYB YWHAZ COX6C RTN3 DIRAS2 RP11-219A15.1 NRGN NAP1L5 RGS12 CABP1 MTATP6P1 RPL31 TOMM7 MIR6723 NCAM2 NDUFB2 FBXO2 OLFM1 ARFGAP2 ARL6IP5 NPTN NEUROD1 NDFIP2 NPTX1 ACTG1 APLP1 CRIP2 GPM6A TMEM35 RPS2 GRIN2A CTDSP1 MTRNR2L1 FAIM2 ATP5B DGKG RP11-111M22.2 OPN3 ARL6IP1 SPTBN1 ATP6AP1 SERPINE2 YWHAQ CDK5R2 APBB1 RPL23A GNAQ CHL1 TF RPL26 MORF4L1 PRKACB TMOD2 RASGRF1 CA11 TAGLN3 PRKCB GDI1 RPL37A SMAP2 SEPW1 MTRNR2L8 NCOA4 SERF2 CLSTN1 RPL32 ATP1B1 UQCRC2 RPS27A BAALC SYT11 REEP2 SLC17A7 LMO3 GABRA1 ONECUT2 NBL1 HOMER1 CALM1 TEX2 SLC39A10 PPP3R1 PKM FKBP4 DYNLL1 TBR1 SLC38A11 MTX3 PPP3CA CREB5 RHBDD2 QKI SARAF APLP2 GUCY1A3 CDH13 TBCA CHN1 HS6ST3 ARL2BP PJA2 CALM3 BCAP31 RPL3 ALDH5A1 SV2B HNRNPH2 KIF1A SNRPN PTMA STUB1 PPP3CB PLCB1 EGR3 TANC1 IDS ALDOA RAB3B SYTL2 ZNF385D\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "mixed excitatory neuron" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MT-CO1 OLFM1 MT-CO2 SNAP25 SYT1 VAMP2 TUBA1B NRGN GPM6A GAPDH RPS4X TSPAN7 MT-ND2 TSC22D1 TMSB10 CHN1 UBE2E3 MT-CO3 DCLK1 NDFIP1 TMSB4X PITHD1 CADM2 LAMTOR5 MT-ATP6 IQCK MT-CYB ATP5I APLP1 CCK MLLT11 MT-ND1 TSPYL1 YWHAB OPN3 ENO2 STMN1 MT-ND4 ENO1 MTRNR2L8 SYT13 PLD3 GDI1 SERINC1 SARAF PCDHGA6 CLTC CALM2 STXBP1 S100A13 PSAP CREG2 GDA PSD3 LDB2 ACTB NEFL SKP1 ACTG1 CKB MAP1A CALM1 MTRNR2L12 GSKIP RTN1 NOV CALM3 HNRNPH2 RAB6B TERF2IP AP2M1 BRK1 OLA1 PPP2R2B STMN2 SERPINE2 ALKBH1 C6ORF1 COPG1 UQCRQ TBR1 ZBTB18 MT-ND3 DGUOK ATP2B2 SEPW1 SPTBN1 BSN SPOCK2 EPB41L3 YWHAG ATP1A3 RP11-632C17__A.1 ESYT1 SCN1B SLC39A10 PPP2R4 ATP2A2 PRNP TXNDC17 NAT8L ZFAND5 PREPL GUK1 SH3GL2 MBOAT7 DIRAS2 DNM3 MT-ND5 PHYHIP YWHAZ ALCAM OAZ1 ARPP19 SMS USMG5 SPOCK1 LDOC1 RPL23A GABRG1 UCHL1 CDC42SE2 HSP90AA1 CLU PARM1 STX1A TPI1 FKBP8 MTATP6P1 COBLL1 HCN1 BTBD10 EIF5A2 FAM84A IPCEF1 PPP3CB HS6ST3 DMTN PPP2CA TKT SYT5 DYNLRB1 SLC38A11 CNRIP1 SOD1 CTBP1 ARL6IP1 GRIN1 ELMO1 GNG3 MAP1LC3A PPP3CA DMKN SNCA NDUFA5 SAP18 ATP5B SYT11 CAPZA2 UBE2V2 ATP6AP2 GSK3A KLC1 FAM131B RPS28 PPP2R1A MTX3 NDUFB3 PCDH19 NDUFS5 RPS15 RPL41 PNMA1 RORB PJA2 BSG TNNT2 PTPRN PFDN4 GCHFR BASP1 RPL39 TOLLIP RPL13A LMO4 CHMP4B RPS2 COX7A2L NAPB ACLY FAM19A2 OPCML NUAK1 SLIT1 ARL6IP5 RPL31 GRIN2A RPL15 SLC30A3 EDNRB KIFAP3 ATP6V1C1 HCN2 ARF1 DYNLL2 TCEB2 ACTR1A EPS15 PTMA UBA52 FXYD6 CLSTN1 ATP1B1 UBL5 MAGEH1 ITM2B RTN4R SMAP2 GRM3 DPY19L1 CALN1 DHCR24 TOMM70A NDUFC1 COX7C DPYSL2 FTH1 TAGLN3 KIAA1045 RAB6A UBC ATP6V1G1 OCIAD1 SLC12A5 CMPK1 MRPL20 SCN1A SLC9A6 VDAC3 NDUFA2 B3GNT1 ANXA7 RPS26 STMN3 CYP26B1 CSDE1 ANO3 LRRIQ1 SYN1 NEGR1 OXCT1 FAIM2 SULT4A1 CAMK2G RAB3A TUBA1A SERPINI1 PPDPF RTN3 PSMD12 DLL3 GHITM DNAJC21 TBC1D15 RPL36A RPL18A UQCRB\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "mixed excitatory neuron" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MT-CO2 MT-CO3 MT-ND2 MT-ATP6 MT-CYB CALM1 MT-ND4 SYT1 TUBA1B ATP1B1 MT-ND1 MT-ND3 CCK SPARCL1 HSP90AA1 RTN3 HSP90AB1 CHN1 MAP1B GAPDH SEZ6L2 FTL CLU PFN2 TIMP2 IPCEF1 CALM2 CDK5R1 SEPW1 RAP1GDS1 ELAVL4 RTN1 EFR3A SYN2 ATP6V1B2 ACTG1 MYL6 PGM2L1 SERPINE2 UBE2E3 PPP1CB UBB PRNP DCLK1 UCHL1 PEBP1 COX5B COX7A2 CALM3 ATP2B2 GAP43 STMN2 MT-CO1 COX4I1 SYT11 RPL18A MORF4L1 PODXL COX7B WDR47 SIRPA GUK1 NCALD SKP1 POLR2I PNKD TMSB10 CPLX2 TSC22D1 WBSCR17 SELM TSPYL1 GUCY1B3 NGFRAP1 PI4KA TMEM11 GHITM ID2 DPP6 YWHAH NELL2 NDFIP1 UQCR10 HINT1 CLTC RAPGEF5 C9ORF16 ETFB LMO3 KCNK1 CDC37 MRPL55 C2ORF80 OPA1 INPP5F LGALS1 ATP5G3 CTSD RHEB STXBP1 COX6A1 RPL10A PFKP GABRA1 FBXL16 CISD1 ATP1A3 FAM219A DKK3 AES LIMK1 NDUFA1 HSPA8 NGEF CABP1 C19ORF70 MAP4 RPL15 POMP ATP6V1C1 UQCRH CEND1 PTGES3 PPP3CB NAP1L3 CYFIP2 ITM2C UBC APP CD63 C14ORF2 LMO4 NDUFA12 MDH1 EIF4A2 C19ORF53 CAMKK2 RPS15 RPL13 COL6A1 CLDN11 NDRG4 RTN4R PPP3CA TM2D3 TUBB4B STRAP DYNLRB1 ENO1 GLRA3 SLC6A1 H2AFZ SNRNP25 DLD RAN NDUFA5 CBLN4 ATP6V0E2 AP2M1 MCHR2 RAB1A TOLLIP ATP5J2 HK1 STMN1 PTPRT PIN1 PLCB1 CKB FAIM2 SERF2 PPIA NCAM2 DBNDD1 FXYD6 PGAM1 NPTN SH3GL2 YWHAB SNCG RTN4 ENC1 RPL32 MSMO1 COX6B1 CHL1 BEX4 ARF1 PPA1 SLC35B1 ELMO1 MET RAB4A DDAH1 YWHAG SOD1 KCNF1 CADPS2 DIRAS1 TXN MAP2K1 DYNLT3 NRGN KIF21A BCAP31 MORF4L2 SRP14 UHMK1 TMA7 CRKL GNG3 DYNLL2 CHMP4B DPYSL2 GABARAP RPS27A ATP6V0C NDUFA11 RPL41 RP11-20I23.1 RPS28 CFH RAB5C RPL17-C18ORF32 RPL17 TUBB RAB3B DNAJC21 TBC1D15\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "mixed excitatory neuron" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: CHN1 ENC1 C1QL2 TSPAN7 MT-CO1 RTN4 CADM2 CDK5R1 CNR1 FAM3C NRGN BTBD1 ATP1B1 RPL21 DPP6 SUMO2 RTN1 CKB ATP1A1 AP1S1 EFR3A SH3GL2 TESPA1 TMEM59L APP KCNV1 YWHAH GRAMD3 PREPL BASP1 ATP5A1 RTN3 NECAB1 TOLLIP SLC17A7 ATP6AP2 HMGCR CLTC NDUFA13 NCEH1 CACNG3 FTH1 SPON2 TSPYL1 EIF4A2 PJA2 MYL6B DHCR24 MT-CO2 GSTP1 NDUFV1 ATP2B4 RPL31 JOSD2 WDR47 MRPL51 HSP90AB1 NEGR1 RCAN2 MPI UQCRQ SNAP25 GDA LPPR4 GRINA SERPINI1 GDI1 CAP2 WBSCR17 KCNAB2 NPTX1 CPE BSN PTMA ATP5I CLSTN1 PFN2 DCLK1 UBL5 NUDT21 CA10 INPP5F SERPINE2 GPM6A RPS15 PHYHIP ESCO2 RGS12 NCDN CALM2 PRKCB YWHAQ GABARAPL1 PCDH8 EPHB6 CALM1 C1ORF95 POLR2M TSC22D1 RAB6A B3GNT1 PTK2B NDRG4 SH3BGRL2 PITHD1 MT-ND2 ATP2B2 PPP1CB ACTB PPP1R9B SPARCL1 MSMO1 TERF2IP CAPZA2 SEZ6L2 SYT11 ALDOA RNASEK-C17ORF49 CFH NGRN SYTL2 RAB3B ZNF385D RP11-219A15.1\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "mixed excitatory neuron" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MT-CO1 MT-CYB SNAP25 MT-ND4 MT-CO2 MT-CO3 MT-ATP6 LMO4 ATP1B1 GPM6A PPP1CB PIK3R1 RGS4 CALM2 MT-ND1 MT-ND2 CDK5R1 PRNP NPTXR CCK MT-ND3 RTN1 ENC1 PPIA FKBP1A MTRNR2L1 TSPYL1 JUND SERPINE2 YWHAQ STXBP1 ITM2B SCOC RPS27A UBE2E3 CHL1 PJA2 RHOB NPTN EPHB1 PHYHIP TM2D3 RPS4X PPP3CB COL12A1 SLC1A2 BASP1 ARPP19 GRIN1 BEX4 PREPL FUNDC1 MAP1B ATP6V0D1 STK24 ACTG1 TSPAN7 FXYD7 ARHGAP35 PEX5L PCDH17 DUSP6 HS6ST2 RP11-166O4.4 PPP3CA AK5 RHBDD2 GRIN2A DYNC1I1 RAB11A DYNLRB1 PPA1 TMSB10 NRGN SYT1 MTRNR2L6 MTATP6P1 SLC17A7 COL24A1 RAPGEF5 TCEB1 MRPL37 SPARCL1 CHN1 WASL PDP1 CCDC25 UROD ACOT4 RASGRF2 MORF4L1 NDUFA1 FKBP4 SMIM12 FAM131B KIF3C TMEM65 ARHGDIG GPR56 BRINP3 ENO2 SKP1 DCLK1 TMEM150C DKK3 NAPB GFRA2 ASAP1 MTPN SUMO2 KLC1 DIRAS1 PAFAH1B2 PEG10 PEA15 ANXA7 VSTM2L ATP5C1 SLC12A5 TRIM37 OR6D1P RTN3 NEUROD1 DYNLL1 RP11-111M22.2 DPYSL2 FGF12 CPE TMSB4X CPNE8 PAM GNB1 BAI2 THY1 ATP9A AKAP12 RTN4 RHEB ATP5I GDI1 ATP6V1G1 PTPRN2 NGFRAP1 CLTA KCNC2 ABHD8 NAP1L3 PTGER3 GAPDH SCD5 PFKP RASGRP1 APLP2 ARL8A HMP19 SUB1 PSAP NRCAM DIRAS2 YWHAG WDR47 RAB3B RP11-219A15.1 ZNF385D SYTL2 AC244489.1 PCDHAC1 PCDHA4 PCDHA9 PCDHA10\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "mixed excitatory neuron" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: SYT1 TUBA1B PRNP MT-CO1 HSP90AB1 RTN1 MT-CO3 SEPW1 CCK STXBP1 CALM2 TMSB10 CKB RPL32 MT-ND3 SYTL2 KLC1 ENO2 CALM3 HSP90AA1 PPP3CA CPLX2 RPL31 MMD NDUFB7 MTRNR2L12 ACTB CA11 RPS4X PIK3R1 NDRG4 CALM1 PREPL MT-ND2 CHN1 MAPK1 SLC17A7 WASF1 VSNL1 EIF4A2 TSPAN7 SNAP25 OLFM1 DPYSL2 RPRM SKP1 SOD1 CLU DIRAS2 SNRPN EIF1 CRYM APP RTN3 GPX4 S100A6 RTN4 PSAP STMN1 TOMM7 GPM6A LMO4 GPR158 YWHAB NDUFA4 CLSTN1 ARF3 ATP2A2 RAN IDS NAP1L5 FOXP2 FXYD6 ARPP19 GAPDH NRCAM RP11-111M22.2 RPL38 SARAF SLC30A3 VSTM2A SERINC1 COX5A THY1 CPE NAPB PFN2 APLP1 MT-CO2 MORF4L1 GABARAP HSPA8 MAGEH1 PRUNE2 YWHAZ SNN COX7C EFR3A OXR1 VDAC2 CAB39 TBCB RASGRP1 KRAS ZBTB45 ATP5C1 PRDM8 TGOLN2 NDFIP2 PGAM1 NRGN RHBDD2 CAP2 CEND1 ZNF365 ARL6IP1 TIMP2 RPS12 CX3CL1 ANO3 POLR2I MAP1A PEBP1 CLTA OLA1 RPL26 KIF1A ATP5E PLCXD3 SYT13 MT-ND1 PHPT1 SH3GL2 COPRS MDH2 NEUROD2 TMEM130 GABRG1 BASP1 SUMO3 GOT1 FKBP1A PNMAL1 SRP14 STMN2 TCEB2 CDK17 CFL1 CDK5 SERF2 NGFRAP1 CNTN1 SLC24A2 RNF11 C16ORF13 NGEF RPS28 ARL8B PRDX2 DMTN NFE2L1 TERF2IP ATP1B1 DIRAS1 LMO3 ACOT7 RAB3C SULT4A1 PCSK1N CTXN1 NMNAT2 GRIN2A B3GNT1 GRINA CABP1 SNCB CTU2 MDH1 MT-ND5 CYCS PAM YIPF3 RGS12 BRK1 MAP1B CHMP5 RAB3IP SV2B UBE2N ID1 TSC22D1 RASGRF2 FAIM2 LYSMD2 RPL7 DCTN1 HMGCR BEX2 NAP1L2 DNER C1D LDB2 SNX10 LSM4 BAALC RPL18A RPS26 PDE1A SELM PRKAR1A PCBP1 PPIA RAB40B VAMP2 RELL2 YWHAG ATP6V1E1 ATP5F1 ATP6V0B STMN4 UQCRH MAP4 RPL23A HINT1 EXTL2 TUBB4A PRKCE NHP2 HOPX ALDOA SCN1B CLDND1 PSD3 PCP4L1 MT-CYB STX1B FXYD7 STX1A ATP5B COPG1 BANF1 TAGLN3 CADM2 FGF12 VSTM2L ELAVL2 CTSD ETFB PRKAR1B PJA2 RPS15 PLCH1 GSK3A AP2M1 NCEH1 PEG10 PGM2L1 DCLK1 KIF3C TRIM37 MFN2 CAMK2D PKM TUBB4B CDC42SE2 TPPP ATP6V1A EPB41L3 PEX5L ZCCHC17 NUAK1 ZFAND5 CREG2 DYNLL1 RAB2A SEZ6L2 NME1 AES PFDN4 NEGR1 RORB DNAJB6 SYT11 SERPINI1 GDI1 CERS6 MYEOV2 SPTBN1 UBE2QL1 UQCR10 NEFM PPP1R7 NDUFA12 SYT4 NCALD LAMTOR1 JUND NCOA4 GSTT1 MTRNR2L1 APLP2 EDIL3 USMG5 ANAPC11 NDUFC2 RPL37A IMMP1L ARL8A TOMM22 MYL6 SLC1A2 CHMP4B PI4KA RANBP1 FTL SLC22A17 TUSC2 TOX BEX1 TPRG1L TPI1 KCNAB2 FAM131B LRP1B CD99L2 PTPRN MPC2 PHYHIP ARPC5L RPS27A NREP IQSEC1 RLIM TMOD2 SNCA SLC9A9 NARS TMA7 PTMA HPRT1 CAMKK2 NSF EPHB6 NDUFA13 PSMB3 RP11-20I23.1 ATP6V0C MTRNR2L6 MRPS28 PLEKHD1 FTH1 CAPZA2 RPL17 RPL17-C18ORF32 PCDHGA6 PCDHGA5 PCDHGA10\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "mixed excitatory neuron" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: CHN1 TCEAL3 PRNP TBC1D15 MT-ND4 NPTN NDFIP2 MT-CO1 TMEM147 ATP1B1 DKK3 LZTS1 PSAP PEBP1 HOPX MAL2 CHL1 ENC1 OLFM1 DSTN NPTX1 RPL31 PTMA HOMER1 SNAP25 PREPL USMG5 ASAP1 ZBTB18 ENO2 DUSP4 GPM6A FAT3 HSP90AA1 COX7C ZFAND5 CDK5R2 BAALC SCAMP5 ACOT7 YWHAQ EGR1 SLC24A2 MT-CO2 PPP3CA LAMTOR5 RAMP1 PRKAR1A NEGR1 HNRNPH2 TPT1 SRP14 DNAJB6 ETFB RPL41 RNF208 CALM2 TSPYL1 RPL35 CNTN1 PRKACB ITM2B FLOT2 RPS6 CDH22 SLC9A6 RSL24D1 NPTX2 CABP1 OR6D1P ARX MDGA1 TERF2IP RPL38 MT-ND1 RPL26 ATP1A3 HINT1 ATP2B2 TAGLN2 SPOCK1 TMEM59L PPIA ABHD8 ARL6IP1 C2ORF80 CPE NPTXR VAMP2 MT-ATP6 NRGN RP11-195F19.5 RPS4X CSDE1 DIRAS2 CREG2 PNMA2 VSNL1 RPS15 GPX4 NRCAM CKB SARAF SGK223 MAP1A PINK1 CAPZA2 SLC25A22 PJA2 ATP1A1 IMMP1L POLR2I MTCH1 FAM219A MTRNR2L12 FXYD6 ID2 RPL11 GABARAPL2 CALM1 RAPGEF5 BAI2 RTN3 GUCY1A3 RPL36A RPL12 MAP4 WASF1 RABAC1 ATP5E GFRA2 REEP5 TGOLN2 ATP6V0C RP11-20I23.1 IDS RPL3 ARFGAP2 RPL21 SYTL2 ZNF385D RAB3B AC244489.1\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "mixed excitatory neuron" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MT-CO3 RAB3B ZNF385D GNAQ CALM2 TMSB10 RPS4X OAZ1 ARPP19 GRIN2A HOPX RPL39 PRKCB SYT1 CALM1 ATP6V1B2 RTN1 BLOC1S1 GPM6A CPE CHN1 GAPDH MT-CO2 PPP3CA ENC1 RPL32 APP CYFIP2 ADAM23 ATP5I TMA7 NRN1 ATP1A3 NEGR1 GUK1 RPS15 NRGN NRCAM TXN RPS19BP1 MAP2K4 TMSB4X NDUFAF2 SOD1 STXBP1 GPX4 H2AFZ MAP2K1 CREG2 GABRA1 BDNF SAMM50 THSD7A RHBDD2 SERINC3 FAM19A1 AES GRINA HSPA4 YWHAH GRPEL1 PFN2 RASGRP1 P2RX6P ATP6AP1 NGEF PSMD12 ACTB VAMP2 RPL37A YAF2 UQCR11 SLC9A6 EGR1 RPS27A RPS26 AK5 CDH7 SERF2 COX4I1 POLR2I AKAP12 SYT13 CLU STMN1 PRKACB MTRNR2L1 RAB40B ID2 CLTC RPL13A MT-ND4L YWHAG JUND NECAB1 HMP19 COX5A ERH HK1 DPP6 AP3S1 IFI6 TLN2 SLC38A1 ATP1B1 PRKCG SYN1 PIN1 DSTN EPS15 PCDHGA5 HSP90AA1 RPL23A CTBP1 ARL6IP1 KIF21A FTL SLIT1 TMEM35 DNAJA1 MORF4L1 UBQLN2 UQCRFS1 FXYD6 MTRNR2L12 BAI2 SPTBN1 ARF3 NREP PPM1A CRIP2 SPRN CAMKK2 RP11-111M22.2 MT-ND3 C1ORF56 WSCD1 NDUFB3 COX5B ATP2A2 NHP2L1 OLFM1 PRNP NGFRAP1 SUB1 NDRG3 RPL31 CNTN1 CAB39 BSG PPP1CB HDLBP PREPL TOMM20 CEND1 AP2M1 CLSTN1 WASL QKI PEBP1 YWHAQ ANXA7 NDUFB2 AZIN1 SKP1 WASF1 KCNK1 SNAP25 PCP4 DNAJC21 TBC1D15 CFH MT-ND4 IDS NDUFB8 ARF5 MTRNR2L6 RP11-219A15.1 NSF TUBB3 MCHR2 RPL21 TPD52 CYB5R3 OPRM1 SYTL2\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "mixed excitatory neuron" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MT-CO3 MT-ND4 MT-CO1 PEBP1 VSNL1 PPP3CA MT-CO2 RPL37A NDUFS5 CHN1 ACTB MT-ND3 LAMP5 MTRNR2L1 OLFM1 MAP2K1 RPS27A OXR1 MED10 NPTX1 COPRS FAIM2 RHBDD2 MYEOV2 GRIN2A SELT NDUFB5 COX6B1 DYNLL1 ENSA JUND SERINC3 EDIL3 RPS6 PPIA KCNV1 CLTB RPL15 MIR6723 GSTO1 DPYSL2 RPL35 SPON2 DNAJB6 STXBP1 VWA5A DIRAS2 IDS SEZ6L CPLX3 NDUFA4L2 KCNAB2 SLC17A7 RASGEF1B TMA7 SOX9 CHCHD2 MT-ND2 VAMP2 TMSB4X PFDN4 MAST3 IGFBP5 CSDE1 ATP2B2 GPM6A RPL32 ALG10 RPL31 HOMER1 ATP1B1 COL9A1 MLLT11 RTN4 NPTXR PDE1A RP11-111M22.2 BANF1 C18ORF61 ENO2 NCBP2-AS2 PIK3R1 SNRPE BSG PITHD1 RPS4X ANXA7 MAGED1 GMFB NGEF CALM1 MTRNR2L6 SERF2 RPL21 RPL3 CFH RPS26 RNASEK-C17ORF49 NSF RPL36A HNRNPA1P40 TBC1D15\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "mixed excitatory neuron" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: SYT1 MT-CO1 MT-CO3 MT-CO2 STMN1 ATP1B1 SNAP25 CHN1 TMSB10 MT-ND4 MT-ND3 MT-CYB CKB RTN4 ITM2B SPARCL1 STXBP1 MAPK1 PPP3CA RTN3 CALM2 RPL8 CALM1 APP PRNP HSP90AA1 TUBA1B ACTB NDRG4 TUBA1A PREPL CYCS VAMP2 GNAQ IDS PEBP1 SLC9A6 ENC1 MT-ND1 CLU GPM6A DNAJC21 KCNC2 ATP5B CLSTN1 ARPP19 PHYHIPL GABARAP AP2S1 THY1 TUBB2A RPS28 RPL6 COX7C RTN1 MAP2K1 MT-ND2 ENO2 MT-ATP6 NGFRAP1 SLC24A2 STMN2 RGS4 TPPP INSIG1 WDR47 RAB3C DPYSL2 UCHL1 PJA2 CALM3 CBX6 TAGLN3 NPTN YWHAZ COX5B AP1S2 EPS15 C14ORF2 SCN1A NDUFA11 MAGED1 KCNA2 BTBD10 PLD3 PGM2L1 MAP1B CADM2 COX6C VDAC3 GAP43 TMEM258 FXYD6 KLC2 BASP1 COX7A2 VSNL1 PFN2 RAB27B STMN3 NNAT SERINC1 MAP1LC3A CCK GUCY1A3 KLHDC3 TSC22D1 RAB2A EIF4G2 ARL6IP1 NAP1L2 TOLLIP RAN UQCRQ SNCA SYT11 TRHDE SYT4 RAB3A RSPO3 SARAF PNMAL1 DIRAS2 CCDC85B CSDE1 NDUFB8 NGEF PI4KA MDH1 CREG2 FAIM2 AP2M1 HSP90AB1 PCBP1 MTRNR2L1 ATP2B2 UQCRH DMTN NDUFA1 TSPAN7 DCLK1 RPL38 MPC2 BEX2 APLP1 ACTG1 CYFIP2 DKK3 PCP4 ARHGAP35 FAM127A ELAVL4 SEPW1 NECAB1 NRCAM RPRM C12ORF57 NDFIP2 APLP2 ATP6V0C RP11-20I23.1 NSF TCEAL2 CDK5 HIGD1A RPL39 ARFGAP2 NDUFC2 RAB11A FAM131B RASGRP1 UBL4A SLC12A5 BEX4 LAMTOR2 DYNLL1 BRK1 CAMK2G CLIP3 CDH8 C11ORF31 PCSK1N RAB3IP COX6B1 PTGES3 RPL15 ASAP2 LANCL1 PTMA CCDC69 APBB1 SNRPE SPTBN1 ATP6V1G1 TPT1 RFK CRYAB MT3 ATP5I BCAP31 ADORA1 NDN FAM219A OXR1 CA11 ARF3 ARHGAP29 LPPR4 SCD5 INA MRPL37 SLC25A11 KCNAB2 RPS2 MYL6 ATP5E TOMM70A SLC38A1 FXYD7 TSPYL4 PNMA2 KLF10 TUBB4B GUCY1B3 UQCR10 NUDT21 TMEM59L LDB2 VPS35 ZNF385A PRKCB LDHB SUCLA2 KIF1A PITPNA HCN1 PLCXD3 NEUROD6 PRKACB ALG3 SYNGR3 KCNK2 YWHAB MT-ND5 ALDOC SNRPN NAT8L WSB2 SV2B PTPRT TMLHE PSAP CNR1 SPHKAP EFHD2 NCEH1 ARHGDIG BEX5 RPH3A SPOCK2 GAPDH GDI1 PSD3 CRIP2 HINT1 PTPRS PIK3R1 MRPL20 ITFG1 TMOD2 CDH13 PTK2B ATP1A1 WBSCR17 TGOLN2 PRKAR1A SLC25A5 CLTC C9ORF16 SEZ6L UBA1 RPL41 CLSTN2 C1ORF233 SLC39A10 PPP2R4 GABARAPL1 NREP SLC17A7 ATP6AP2 RNF11 HTR2A ATP6V1A YWHAG PRKCE DRAP1 SLC25A4 SEC61G FAM3C PHYHIP NGRN CCDC115 COL12A1 C12ORF49 CDK5R2 HAPLN4 KCNK1 ADAM23 ATRN HOMER1 TOMM34 PPIA POLR2I UHMK1 ATP6V1F ANXA6 ZFAND5 GRIN3A TMSB4X KIFAP3 ATP9A PTPN20A FGF12 CAPNS1 PEF1 EPHB6 CTSD NTN4 NDUFB4 NCDN STX1A NRN1 MAPK8IP2 COL11A1 CETN2 PPA1 NDUFA13 NAP1L3 WASL SMIM13 ATP5J2 RORB NAPA LIMK1 SLC1A2 RPS6 CFL1 FABP3 KIAA1045 ATP5G3 CCDC25 CISD1 ELAVL2 TMEM52B TCEB1 ISCU TMEM70 LMO3 SRP14 NCAM2 SYNJ1 RPL32 TCEAL5 TOMM22 ENSA ATXN10 GLRA3 ATP2A2 AKAP12 RBX1 PHPT1 MTX3 SYNPO SNRNP25 TLN2 MAP4 TBCB AZIN1 NMNAT2 COX4I1 SELM OPA1 OLFM1 EIF1B SLC22A17 PSMD2 UQCR11 GRIN2A PPP2CA TXNDC17 CPE TOMM20 UBC NDUFB1 CEND1 USMG5 YWHAH EXTL2 MYL6B UBE2V2 TLE4 C7ORF50 SIRPA PGRMC1 RAP1GAP2 ATP6V1B2 SSBP3 MAP2K4 RPS27A MORF4L2 RXFP1 RPL37A GNG3 ALDOA SH3BGRL3 ARPC5L PRDX5 LHFP FSCN1 ARL6IP5 ABRACL JUND TMEM155 MRAS PPP1R9B RPS4X RCAN2 TPI1 MT-ND4L BEX1 DCTN1 SKP1 TM2D3 ACTR1A ATP6AP1 EPB41L3 GUK1 SERPINI1 GDE1 PCMT1 NELL2 SPOCK1 NEXN PFDN4 SERF2 UBE2N OXCT1 PPP1CB RPS15 ATP6V0E2 TUBB NUDT4 TUBB3 MTRNR2L6 PGAM1 FTH1 ZNF385D ESCO2 RAB3B SYTL2 LAMTOR5\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "mixed excitatory neuron" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: CALM2 MT-CO2 MT-CO1 RTN3 MT-ND4 MT-CO3 ATP1B1 SERPINI1 SYT1 CHN1 PFN2 ELMO1 EFR3A MTRNR2L1 CCK NRGN SNAP25 CABP1 BASP1 PSAP TMSB4X MT-ND3 GPX1 RTN4 APP DPP6 RPL31 PGAM1 SCN3B SERINC3 MT-ND2 RTN1 ELAVL4 GAP43 BCKDK NELL1 ANXA7 DYNLL2 NCAM2 ANGPTL4 PRKCE STXBP1 ATP5A1 FXYD6 MGST3 GABARAPL1 TUBB4A RPL15 CDK5R1 ENO2 PDP1 PNMA2 GOT1 HMGCR TRMT112 DCTN1 MTRNR2L12 C4ORF3 NME1 PPP3CA CKB IPCEF1 GUK1 VSNL1 SV2B SSBP3 COX7C MT-ND4L RABAC1 AQP4 HOMER1 MAP2K1 UROS LMO4 PKM AKAP12 MAP1B PDLIM5 PCGF1 RAB11A NSF GNB1 NDRG4 SLC22A17 NMNAT2 MAL2 PPP2R1A ESYT1 BEND5 TOMM70A YWHAZ FBXO2 SLITRK1 CADM2 PRDM8 SGCD CBX6 NAP1L3 DYNLL1 RPS3A TUBB4B TESPA1 CDS1 PEF1 RPL21 PACSIN1 STMN1 TMSB10 GPM6A OAT APLP2 RHBDD2 UQCRH KIFAP3 DDN ATP9A NREP ARF3 RGS4 AP2M1 ATP2B4 MPI NDFIP1 FSCN1 SNCB AP1S1 ACTR1A RPL26 MAPRE2 SLC25A6 GPR88 PTPRZ1 ARPP19 CMAS RAB6B CDC37 GRIN2A TUBA1A RPL12 OLFM1 RHOA STMN2 ABHD14A ACTB BAG4 FXYD7 GFRA2 NPTXR CYP2R1 PDE1C RPS26 QDPR D4S234E ADORA1 STRAP TUBA1B PRNP VAMP2 ATP6V1B2 RNF208 FGF12 HSPA4 TSPYL1 NEFL PHYHIP RASGRF1 ASAP1 MIEN1 TUBB2B MAGED1 RPH3A TM2D3 CDK5R2 RPS15 EIF4A2 CPE UQCRB UCHL1 SEZ6L2 FKBP8 LYNX1 FAM127A CEND1 ENC1 RAP1GAP2 CTXN1 SLC24A2 ZFAND5 DCLK1 FAM163B COX7B VDAC3 ARF1 SPOCK1 FKBP1A PPP2R2B ATP6V0D1 RAB7A IQSEC1 TSPAN7 MTRNR2L6 GUCY1B3 MYEOV2 RPS19BP1 HOPX SNRPN EIF1B PTPRS RAB2A TPI1 RPL3 BSCL2 IDS ZNF385D ARFGAP2 SYTL2 PLEKHD1 HNRNPA1P40 RAB3B ESCO2 PCDHA9 PCDHAC1 PCDHA4 PCDHA10\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "mixed excitatory neuron" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: SYT1 CCK RPL7 SNAP25 MT-CO2 RTN3 RPL3 SNRPN MT-ND1 PPIA CLU HSP90AA1 CALM2 CALM1 TUBA1B ENSA COX7C SV2B FTL NPTX1 ATP6V0B RPL11 PREPL APBB1 MT-CO3 TPI1 STMN2 ENC1 GAPDH SERF2 FAIM2 CHN1 USMG5 ATP6V1G1 NDUFB5 EDF1 MT-ND2 RPL6 TMA7 RTN4 RPL37A RPS27A APLP2 SPARCL1 RPS15 NAA38 YWHAH SLC39A10 FABP5 THY1 PDE1A GABARAPL1 NCAM2 ENO1 TBC1D15 SYTL2 RAB3B ZNF385D GUCY1A3 OXCT1 C19ORF70 CISD1 NDUFA13 ACTB B3GALT2 SLC12A5 COX7A2 GUK1 LRRC59 RPS10 TUBB4A DYNLL2 RPS28 TMSB4X PSMB5 MT-CO1 GALNT14 TMSB10 TMEM35 PET100 GHITM FIBP ELMO1 SIRPA RPL12 CCT5 PEBP1 APP RPL13A HOMER1 PAFAH1B2 PIN1 LMO4 CRIM1 NUAK1 PSMD8 TESPA1 CCDC183 SYNPO WDR47 KIFAP3 PSAP NTN4 NRN1 SLC17A7 RP1-152L7.5 UBL5 SSBP3 PPP3CA UBB PNKD GUCY1B3 SCN4B GDE1 PI4KA BIRC5 FTH1 NBL1 KCNMB4 OLFM1 DCTN1 SYT4 NELL2 ACTG1 NDUFAB1 LAGE3 GDA RPL26 NCEH1 STMN1 ATP5H SPCS2 VAPB GLO1 ANKRD20A11P PPP2R2C CKB MT-ATP6 UQCRB TUBA4A PJA2 NDUFB7 OXR1 MAPRE2 RFK CERS6 HSPE1 MRPS7 BASP1 SH3BGRL2 PDP1 COX6B1 PCMT1 LMBRD2 MLF2 BSN SAP18 CLDND1 OPRK1 PRKCB SPRYD3 H2AFZ MT-ND3 IGFBP5 SELT SERINC1 ATP5O ACAT2 PFKP SUMO2 ATP5J OPA1 SELM NEUROD2 UCHL1 TAGLN3 SULT4A1 APLP1 SEPW1 KIF21A MRPL20 ADAM23 EID1 MAP1A RPS6 CYFIP2 NFE2L1 UQCRC2 TMEM65 PSMD12 GDI1 TM2D3 FXYD6 DYNLL1 RPL8 RPL15 SERPINF1 RNASEK-C17ORF49 RPL41 ATP6V1G2 RPS3A RP11-597D13.7 DNAJC21\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "mixed excitatory neuron" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MT-CO3 SNAP25 MT-CO2 MT-CO1 HINT1 ARF1 UQCRB PRKCB RAB3B GRIN1 NRGN RPL37A PHYHIPL RTN1 VSNL1 SERF2 GNAQ GRIN2A RPL32 ZBTB18 SPTBN1 ENO2 GPM6A PRKACB EIF4A2 RPL13 CAPZA2 PRKAR1A AK5 MT-ND2 ARPP19 NAT8L APLP1 RPL38 ATP5J2 ALKBH1 HSPA8 ARL6IP5 RAB1A CDH7 RPL39 CHL1 CALM2 ELMO1 ATP6AP1 SUMO2 LDB2 LUZP2 RPS6 RLIM DDAH1 PKM NEFL NDFIP2 PSMC3 RPL23A ATP5G2 PCBP1 ATP6AP2 CERS6 ATP6V1G1 JUND WBSCR17 MAP1LC3A MTRNR2L12 SCD5 RPL6 YWHAZ THY1 HOPX ATP5G1 DNAJC21 RSL24D1 MAFB PSMC5 DYNLL1 OAZ1 AES NDUFAF2 SPOCK3 COX6A1 CLIP3 SLC39A10 IGSF21 MT-ND4 PNMAL2 MPI ATP9A SLC22A17 SMAP2 RPS26 RPS15 TPT1 LGALS1 DNAJB6 TIMP3 TMSB4X NHP2L1 NDRG4 BIRC5 PJA2 SCN1A SOD1 SYNGR3 TMEM141 ACTG1 FAIM2 INA EDF1 NAPB CAPZB RASGRF2 BSN SLITRK1 RPS4X NDUFA8 PNMA2 NPTN STXBP1 CDC42SE2 PEBP1 PTPRS YWHAG DRAP1 PRKAR1B CPNE8 IDS MAP1A SNN MMD MRPS21 TBCB CTU2 MAPK8IP2 PDLIM5 SNX3 CCK BAI2 PROM1 SCOC NCBP2-AS2 HOMER1 RAPGEF5 PPP3CA SERPINE2 GAPDH AQP4 NARS NDUFA4 NDUFA5 MT-ND3 NCAM2 CORO2B RPL31 COX4I1 RPS27A NRSN2 POLR2I RGS12 HK1 TSC22D1 SV2B BNIP3 AIMP2 UQCRQ CDK17 ATP1A1 SOX6 PDP1 ARPC4 MAST3 LMO4 NDUFB2 CALB1 DYNLL2 POLR2K ITM2C SYNJ1 RPL21 RPL17-C18ORF32 GABARAP C18ORF32 RPS3A RPL7\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "mixed excitatory neuron" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MT-CO1 MT-ND2 ZNF385D MT-CO3 CHN1 MT-CYB SYTL2 MT-ND4 MT-ATP6 SYT11 NRGN RAB3B VAMP2 MAP1B CLIP3 PEX5L TMEM130 ATP9A APP MT-CO2 NELL2 YWHAB CLSTN1 RPL37A CALM2 UCHL1 KLC1 SNAP25 SYT1 LDHB C4ORF3 MAL2 NPTXR PDP1 AP3S1 VSTM2L ADAMTS9 AP2M1 COX6B1 INPP5F MT-ND1 NGFRAP1 CDK5 SV2B STMN1 CLU HMGCR TCEB1 CHL1 VPS35 RAN NDUFC1 HSP90AB1 TLN2 TIMP2 ETS2 SEPW1 TMEM258 PJA2 RGS4 SPTBN1 RAB7A CALM3 SERP2 WASF1 UQCRB USP27X BEX2 ARL2BP ATP6V1F RPL23A UBA1 MAST3 RAB6A EPDR1 DIRAS1 HOMER1 RHBDD2 TPPP LMO3 MYL12B SLC8A2 NDUFA11 H2AFZ PSMD2 FKBP8 BANF1 VDAC1 EID1 GHITM C14ORF2 APLP2 PIK3R1 WASL PCBP1 TOLLIP ARL6IP1 CADM2 CHCHD2 SIRPA TPD52 RPS28 UQCRQ ACTR10 CREG2 GPX4 NAPB MTRNR2L8 SLC38A1 NECAB1 SLC22A17 ARPP19 CD63 RTN4 DPYSL2 SCN2B RPL31 BTNL9 CLTA PPP2CB STXBP1 PHYHIPL TMSB10 GDI1 ENC1 DCLK3 PODXL HINT1 SPOCK2 TPT1 OLFM1 AP2B1 TMEM117 ITM2C PCDH8 ENSA SKP1 HSP90AA1 KIF5A PHYHIP MTND1P23 CNTN1 PRNP NBL1 EIF4A2 ATP5J2 ATP6V1G1 LGI3 ARHGAP35 PPM1A SDCBP SPARCL1 CAMK4 LINGO1 C12ORF57 LPPR4 SERINC1 MIEN1 GUK1 CDK5R1 PGRMC1 SNX10 WDR47 TBC1D15 FRMPD2 IDS FTH1 RPL41 RPL3 RPL6 BSCL2 GABARAP SNRPN NR1I3 PI4KA\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "mixed excitatory neuron" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MT-CO1 SYT1 SNAP25 MT-CO2 MT-CO3 ACTB NRGN MT-ND4 MTRNR2L1 RPL31 MT-ND2 CALM2 PREPL GPM6A DYNLL1 MT-CYB PRKCB CRKL KCNA2 BASP1 FAIM2 NPTN TUBA1A ATP1B1 PTPRT OAZ1 EPHB6 CADM2 APP WBP2 STMN1 MORF4L1 CLPTM1 ENSA CDK5R1 IQSEC1 EZH2 MT-ATP6 TSPYL1 MTRNR2L6 SYN1 PRKACB DNAJC6 STXBP1 GHITM EGR1 VPS35 THOC7 NECAB1 CHL1 SERINC1 C1ORF115 EIF4A2 APLP1 NAP1L5 RNF208 PLCB1 RPRM RTN1 PNMA2 PLCD1 TBR1 PPP3CA MAP1B NDFIP1 MT-ND3 PPP2CB SNN NPTX1 ATP5A1 PTMA PPP2R2B HDDC2 EPS15 CAMK2D APLP2 OAT SCN1A LAGE3 SIRPA ATP6V1A SEZ6L OLFM1 WASL RPS27A ARL8B NCEH1 TAGLN3 STMN2 PEBP1 ARPP19 MT-ND1 HMP19 NGRN EFHD2 ELAVL2 CDC42SE2 TOMM20 SUB1 PTPRS SYN2 AP1S1 SCD5 LINGO1 PGM2L1 COX7A2L FAM174A ATP5I CCDC115 SERINC3 CA10 DYNLRB1 CALM3 KCNC2 REEP5 KCNA1 MAGED2 SLC17A7 ATP6V1C1 PNKD EIF1B STX1A PJA2 MORF4L2 ZMAT2 CTBP1 SCN2B PHYHIP ATPAF1 COPRS DPYSL2 LDB2 MAGED1 ZFAND5 SYT4 MLLT11 GUCY1B3 CYP26B1 PDE1A CDK14 CSDE1 GABARAPL2 VSNL1 RAB3B NUAK1 KLHDC3 SLIT1 CPLX2 CHCHD2 PPIA CADPS2 CDK5R2 AP2B1 PPP2R2C PBX3 ATP6AP2 FXYD6 CAMKK2 PCMT1 ZBTB18 UBQLN2 TMTC4 ATP5J NPTXR NDUFB10 RPH3A SH3BGRL2 GABRA1 RAP2A NDUFA4 KIFAP3 LIMK1 TSC22D1 PRDX5 GYG1 PITHD1 MED10 DPY30 OTOA VSTM2L YAF2 JUND TOMM70A CALM1 SPTBN1 IPCEF1 AP2M1 LDHB PRUNE2 PNMAL1 SNCB MRAS WSB2 TSPYL4 OPN3 C1ORF52 ARHGDIA UQCRH C18ORF21 PHYHIPL ATP2B4 NKIRAS1 GDI1 PFKP ITM2C PSD3 RAB3A NRSN2 NDUFV1 ZNF174 SLC24A2 RP11-111M22.2 TGOLN2 TCEAL7 GRIN2A SERPINI1 RTN4 ATP9A KCNC3 TBCA EHD3 BNIP3 GAP43 BHLHE40 ATP5F1 NAT8L DKK3 ATP1A3 PEX5L NAP1L2 SCN1B ARL8A BEX5 RAB27B FAM3C MZT1 NDRG4 EID1 PEA15 REEP2 CKB NELL2 BAG4 CLTA B3GNT1 MTCH1 YWHAG RAB6A CDR2L SULT4A1 TUBB4B VDAC3 CYFIP2 CFL1 CAB39 BEND5 RTN3 HSP90AB1 MAP2K1 SRD5A1 NCALD COX7C ASAP2 RPL41 ATP6V0C FTH1 RP11-20I23.1 CFH RPL7 TF PCDHGA5 PCDHGA6 PCDHGA10\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "mixed excitatory neuron" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: CALM1 SNAP25 CALM2 RTN4 MT-CO1 SYT1 MT-CO3 MT-ND2 CLSTN1 CHN1 MT-CO2 RAB3A GAPDH PPP3CA PRNP CPE RTN1 PRKCB PSD3 GABARAPL2 PPP3CB ATP1B1 CAMK4 NPTX1 ANXA6 SLC8A2 UCHL1 PSAP ATP2A2 MAP1B NDUFA13 OLFM1 MTPN RTN3 SCN1A CAMK2G PGM2L1 RP11-111M22.2 MT-ATP6 VSNL1 MT-ND4 HSP90AA1 RHEB TSPAN7 PLD3 YWHAB INA GHITM C14ORF2 FXYD6 SERPINE2 TMSB4X TMEM130 TOMM20 RPL15 MTRNR2L12 CADM2 RAN HTR2A AK5 EIF1AX CDC37 CDK17 SCAMP5 RGS4 GPX4 OXR1 BEX1 SULT4A1 MLLT11 TMX4 OPN3 GPM6A SYT4 STMN1 ATRN ARL6IP5 YWHAH ARPP19 SLC12A5 PSMB5 ARL6IP1 VAMP2 FARSA WDR47 TMA7 NEFL NELL2 APLP2 UQCR10 FAM19A1 ATP5B APP EHD3 OCIAD1 MAPK1 NDFIP1 CTNND2 ATP9A ANO3 CREG2 TPPP TMOD2 CADM3 TMEM59L RHOB EIF4A2 ALDOA RAB3B SYTL2 ZNF385D TUBB2A NDUFB11 PLCB1 ATP5I EIF4G2 ATP6V1A BCAS2 ATP6V1F GABARAPL1 SPOCK1 CDK5R1 VDAC1 TRIM36 EFR3A PEBP1 NFE2L1 SKP1 ATP6V0C NAP1L3 ENOPH1 CTSD MAPRE2 LRFN3 RAB6A DYNLL2 RAMP1 RPL13 MT-CYB WSB2 DGKG RASGRF1 NCDN RAB1A APLP1 VPS35 SLITRK1 CFL1 DYNLRB1 DIRAS2 SH3GL2 PDE1A FAM134A IGFBP6 PIK3R1 ACTB SLC9A6 ZCCHC17 PHB FABP3 PPARGC1A COPS7A ASAP1 CRYM HINT1 PITHD1 ZBTB18 ATP1A1 SOD1 CA10 TUBA1B BAALC EPB41L3 POU3F1 C14ORF132 RPL41 PDP1 CX3CL1 SNCA RLIM SERINC1 LDB2 NGFRAP1 DLX1 PPP2R2C MTCH1 DYNLL1 DYNC1I1 MORF4L1 NECAB1 RORB RASGRF2 TUBB4A UQCRB CAMKK2 C1D ATP2B4 ARL4D NDFIP2 SLIT1 C1ORF115 SYT5 CHGB AZIN1 PPTC7 LAMP5 FTL REEP5 SRP14 KLHDC3 TOMM70A ATP6V1E1 MMD TUSC2 GOT1 SYT3 SLC39A10 ITM2C SLC22A17 LYNX1 ATP2B2 PREPL CORO2B IQSEC1 TRIM37 COX6C LINGO1 KIF21A PNMA2 MTRNR2L1 TCEAL7 UBA1 IGFBP2 ENO1 ENC1 TSC22D1 RPL32 BNIP3 ALDH5A1 NRN1 C11ORF31 NRF1 ALDOC ARL1 ARHGDIG FKBP1A CHCHD2 SCD5 PRDX1 RRAGA GNAQ VDAC3 MLF2 STMN2 LRRIQ1 LPPR4 CBLN4 PNMAL2 YWHAZ TESPA1 KIF5A ITFG1 GDE1 CAP2 NRGN MT-ND3 DCTPP1 CLU SERINC3 SLC17A7 CAB39 ENO2 SYT11 UQCRC2 DCLK1 GNB1 SYN1 NAT8L FAM131B MTATP6P1 RBX1 TCEB1 DKK3 ATP1A3 GRIN1 SDCBP RP11-20I23.1 DPP6 GAP43 PTMA MYEOV2 ATP5J AP1S1 COX6B1 PGRMC1 APEH CD63 APBB1 NGEF NAP1L2 KLHL1 C12ORF49 ATP6V0B DDAH1 ETS2 GPR26 CCK ATP5G3 MT2A COQ10B C2ORF47 SV2B BASP1 CALM3 TPT1 RAPGEF5 IGSF21 MT-ND1 ACTG1 RAB3C SERPINI1 IDS GPR158 CACNG3 HDLBP F8 TSPYL1 ATP6AP1 PRKAR1B CD59 BTBD10 ATP6V1B2 SCN2B STUB1 KCNV1 SUMO3 GRIN2A MAP1A CERS6 GPR150 CYP26B1 HOMER1 PHYHIP SUB1 HSP90AB1 ATP6V1G2 RNASEK-C17ORF49 EPHB6 MIF PLEKHD1 NR1I3 PCDHGA5 PCDHGA6 PCDHGA10 DNAJC21 TBC1D15\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "mixed excitatory neuron" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: TUBD1 CHN1 SNAP25 TSPAN7 MT-CO1 CLSTN1 SERINC3 MT-CO2 CTGF SPARCL1 RAP1GAP2 ATP1B1 TMSB10 CALM3 NPTX1 TMSB4X KCNAB2 HSP90AA1 PCDH17 ADCYAP1 GNAQ SPTBN1 NRGN BRK1 MT-CO3 CALM2 THY1 TSC22D1 GAPDH LANCL1 SYT1 SERPINE2 RTN1 PRKCB PPP2CB RASGRF1 PPP3CB KCNK1 ATP5F1 RPL26 NCEH1 TENM3 PSMB7 SYN2 NEGR1 FAIM2 DNM3 DSTN VSNL1 SLC25A4 RPL10A ITPR2 PTK2B CCDC85B ALCAM RCAN2 EIF4A2 MAP1B PKM TUBA1B UBL5 TRIB1 RAB6B HRK ETV1 UBE2N APLP1 INPP5F C11ORF31 ST6GALNAC3 PRKACB DUSP6 TLE4 CAMK2D OAT PACSIN1 ATP6V0B NGFRAP1 RPL31 SEPW1 BEX1 TMEM147 OAZ1 MTRNR2L12 DKK3 MAP2K1 SLC38A1 PGM2L1 C19ORF43 NDUFB11 CPE HSP90AB1 SPOCK2 MYL6B ACTB YWHAH VGF EID1 PGAM1 PPP1CB TOMM34 CABP1 KLHDC3 MPP1 EPDR1 MBP SLC1A2 ENC1 IFI6 DDN RP11-111M22.2 YWHAG MORF4L2 PRNP LHFP RPL6 ATP6AP1 RPL8 RPL15 LINC00087 FTH1 RPS26 COX6A1 FLOT2 CAPZB YIPF1 KLK7 APP CTSD STX1B ENSA CLU PFDN1 SLC22A17 C9ORF16 SLC12A5 GDA PEX5L AP2M1 TMX4 SYT11 REEP2 ASCL1 KIF3C ENO2 PPP3CA RASGRP1 LMO3 HNRNPH2 MT-ND4 DCLK1 RPS28 PTCHD4 SYTL2 LINC00116 PMEPA1 PRKCG PHYHIPL RTN4 ATP6V1G2 RPL7 TUBB3 LYNX1 ALDH5A1 PCDHGA10 PCDHGA5 PCDHGA6\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "mixed excitatory neuron" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: RAB3B ZNF385D SYT1 NR1I3 RPS15 RPS27A TAGLN3 TF ATP1B1 PPP3CA TPT1 MTRNR2L1 FTL ARPP19 ATP5I RPL38 FTH1 SNAP25 RPL6 TCEAL3 AP2M1 VSTM2A CAMKK2 SERPINE2 ALDH5A1 CLTC UBB CABP1 RPL31 C14ORF2 STXBP1 SERF2 RELN TMEM155 BCAP31 SPON2 GHITM BASP1 RPL11 NPTN ENO1 SEC61G UCHL1 LMBRD2 PFDN1 RPS6 SERINC1 SLC25A22 TOMM7 ACP1 SELT ADAM23 SARAF RPL8 EIF4A2 MAP1B NDFIP1 DYNLRB1 CALM3 IDH3A MRPL52 PREPL CALM2 SLC17A7 MYBPC1 GRAMD3 PPP3R1 GRIN2A GAP43 CAPZA2 FAM84A TKT PACSIN1 SCD5 NELL1 CHL1 HOMER1 PDP1 TUBA1A SDK2 RPL37A SLC8A2 TMOD2 PPP1R7 CD59 TCEAL2 NELL2 PGAM1 HSP90AB1 SLC22A17 UHMK1 KLHDC3 ENC1 PEG10 DNAJB6 SSBP3 KCNMB4 RPL32 RGS4 CMAHP TOMM70A PHYHIP CDK5R1 UQCRB DDR2 ITM2B SYNGR1 SYT5 ATP6V0B CYFIP2 TUBA1B COX6A1 PSAP OR6D1P CHN1 GABARAPL2 SEMA5A GRINA YWHAZ RAP2A PFN2 EIF1AX PRKCE APP RPL41 SMAP2 RANBP3L RPL26 NDUFB8 MDH1 NEUROD2 TMEM59L ARFGAP2 MTND2P28 MT-ND2 IDS MTRNR2L6 NSF CYB5R3\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "mixed excitatory neuron" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: SYT1 SNAP25 MT-CO3 MT-CO1 MT-ND4 MT-CO2 TMSB10 MT-ND2 CADM2 COX6C MT-ATP6 ATP1B1 PPP3CA MT-ND1 TMSB4X RPL31 APP STMN2 DPYSL2 PRNP CCK MT-CYB RTN1 ATP6AP2 RPL26 HSP90AB1 SPARCL1 TSPAN7 GAPDH OLFM1 RPL13A RPL37A MTRNR2L12 NGFRAP1 GHITM TSHZ2 PFN2 ITM2B FAIM2 RPS2 YWHAB MAGED1 THY1 ARPP19 MTCH1 EIF1AX MAP4 GOT1 MTRNR2L6 RPS4X CLTC ATP5J STMN1 EIF4A2 BASP1 TPT1 NDRG4 DCLK1 RPL41 PPP1CB RPL3 NRCAM CAMK2G UQCRH UQCRB ATP6V1C1 SEZ6L2 PHYHIP MTATP6P1 INPP5F RPS12 COX7A2 RTN3 EIF4G2 YWHAG EPS15 EFHD2 PSAP CLSTN1 MTRNR2L1 HTR2A MAP1B TPPP STXBP1 UQCR11 KCNAB1 SERPINI1 HSPA8 YWHAZ HNRNPH2 ACTB SAP18 C14ORF2 PKM RPL7 STX1B TUBA1B NFE2L1 TSC22D1 ATP6V0C RP11-20I23.1 RAB3B SLC6A17 PTGDS RAB1A RPL23A SLITRK1 RORB LMO4 CNRIP1 CKB UQCR10 SCAND1 B3GNT1 BNIP3 PPA1 ATP6V1B2 SERPINE2 RPL12 GABARAPL1 RAP1GDS1 ATXN10 SQLE CALM3 YWHAQ RPL6 CAP2 IGSF21 USP27X CRYM CALM1 MTND1P23 DNM3 MYEOV2 FOXP2 RHOB RHBDD2 COMMD6 QDPR PNMA2 CDC42SE2 GDA PPP2R2B NEGR1 BSN ARL6IP5 RAB3A AZIN1 RLIM RXFP1 GPM6A KIF3C GPX4 RPL13 CFL1 EDIL3 CHN1 NDUFB4 SYT11 ABRACL PJA2 SLC17A7 NDUFA11 GNG3 ATP5J2 SV2B KIF5A HINT1 MT-ND3 CALM2 PTPRN2 MARCKS LAMTOR5 SERF2 MLLT11 FXYD6 SARAF NDUFV1 UBB CDK5R1 USMG5 TRMT112 WDR47 DMTN TMEM35 AP2M1 F8 ANXA6 PEA15 TOMM20 NDUFA12 ACTG1 OCIAD1 OAZ1 C19ORF43 VDAC1 COX7A1 SNCB NGEF ANO3 DYNLRB1 GAP43 CABP1 APOE FAM3C PEF1 EGFL7 PSMA7 PRKACB RPRM DKK3 LANCL1 SCD5 IDI1 NAP1L3 ARL6IP1 TSPYL5 MAPK1 ATP6V1A HEY1 FASN CBX6 MYL6 ATP6V1E1 DYNLL1 ATP6AP1 S100A6 SCAMP5 ALDOA KCNC3 ENC1 LRP1B MAP2K1 BEX1 NDUFA13 SNX10 RTN4 SERINC3 NPTX1 ATP1A1 GRM3 PTGES3 PPP3CB MAP1A PHYHIPL DHCR24 PRKCE FAM131B PRDX2 SCOC PINK1 SLC12A5 MRPL33 RAB27B C20ORF24 NDUFB2 PSMD12 SLC9A6 NOV NDUFS5 MSMO1 ABCC12 BEX4 PRPS1 PSMB7 APLP2 SLC24A2 DSTN NGRN NAT8L VDAC3 RPL36A C4ORF3 RPS6 GRINA LPAR2 MAP2K4 PGRMC1 SSBP3 PPDPF SCN1B DCLK3 NPTXR NDFIP1 PITPNA GRIN2A RPL11 PGD PDE1A KLC1 COX17 HPCA CTNNB1 COPS7A FXYD7 PIK3R1 TSPYL1 NNAT UBL5 CAMK2D RANBP1 COX5A KCNH5 LPPR4 ELAVL4 ELAVL2 COBLL1 NDUFAF3 NAPB SLC25A22 AP3S1 CREB5 C10ORF10 RHEB ABHD14A SYNGR1 HIGD1A B3GALT2 MT-ND5 ENO2 VAMP2 RPS27A UBE2L6 DMKN APBB1 FAT3 ITFG1 RPL21 TF RNASEK-C17ORF49 NSF IDS RPS3A HNRNPA1P40 PLEKHD1 PCDHA4 PCDHAC1 PCDHA10 PCDHA9\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "mixed excitatory neuron" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: RPL38 MT-CO2 PEBP1 MT-ND4 CALM2 CADM2 SNAP25 MT-CYB CPE CALM1 STXBP1 MT-CO3 SYT1 SYTL2 RAB3B TBC1D15 WASF1 EIF4A2 RTN4 DSTN MT-CO1 PRNP TMSB10 TUBA1B NGFRAP1 STMN1 BEX1 SERPINI1 TPT1 RP11-111M22.2 SERF2 CPNE8 RPS12 COX6C ENC1 UQCRB TOMM7 NRGN SCD5 GAPDH SYN2 RPL32 NDUFA4 RPL11 TMSB4X RPL13 GAP43 RPL31 NAPB RPL35 OLA1 ATP1B1 GRIN2A MAP1B HIGD1A ZNF385D ARFGAP2 TF OAT BEX5 BAD PDP1 ITM2C YWHAG CSDE1 LYPD6 MAPRE3 MTCH1 SELT TMA7 DYNLT3 UBQLN2 HSP90AB1 TSPAN7 RNF11 ATP5I H2AFZ CBX6 SLC8A2 MRPL47 NELL2 STK39 MSMO1 AP3S1 TBR1 ATP5G3 MED10 CRIP2 UBE2QL1 CYCS AZIN1 RPL26 ARPP19 SUMO3 NDUFS5 ZFAND5 NDUFB1 FAM84A YWHAH BASP1 TSC22D1 NDUFA5 CKB DCTPP1 GDI1 MFGE8 MARCKS COX6B1 CYSTM1 HMGCS1 DNAJB9 PSMD8 RAB7A SIRPA EPS15 ARL6IP1 HOPX C14ORF2 APBB1 HSPA4 SLC12A5 GABARAPL2 NAPA RAB2A FAT3 SYNPO SUSD4 GLRA3 MYEOV2 PPM1A KIF1A PRKACB MT-ND4L PRPS1 PPP3CB PPP3CA DEPDC1B ATP5G1 YJEFN3 SKP1 OPA1 RSL24D1 UCHL1 HSP90AA1 SUMO2 EFR3A ITM2B PGK1 RAB3C ATP2B4 GUCY1A3 PARM1 PPP3R1 GUCY1B3 RASSF3 NDUFA1 SERINC1 PJA2 PEX5L NGEF PHKG1 AP2M1 TPI1 KCNK1 NAP1L5 MORF4L1 DYNLL1 NPTN VSNL1 ALDH5A1 PRKAR1B PHYHIP PSAP MTRNR2L12 CPLX1 ARF5 TMEM155 FTH1 YIPF3 SNRPE IFI6 KIF5A MPPED1 MRFAP1 KCNMB4 DNAJC5 SERP2 SARAF MT-ND1 RPL36A SLC39A10 PREPL TBCA TESPA1 NUAK1 SPARCL1 RAD23B PFN2 THOC7 TUBB4A ANXA6 TXN SLC25A11 CAPZB RPS10 PPP2CA GNAQ MT-ND3 HOMER1 STMN3 ELAVL2 TRHDE VAMP2 RPS28 AGA RPL13A ZDHHC12 FKBP1A VDAC1 SUMO1 GPM6A PRDX5 PRKCB PGM2L1 S100A6 MCHR2 CHN1 WFS1 CDK5R1 ATP2A2 PPARGC1A SLC24A2 RAB6A DNAJC6 ATP2B2 NSDHL RP11-413E6.1 RAB6B HBA2 RPS27A PGAM1 GNB1 ATP5E NDUFA13 RTN1 GABARAP RPL17 ATP6V0C THY1 CFH RP11-20I23.1 RPL17-C18ORF32 MIF GTF2H2C_2 KRT17P6 RPL7 RPL21 CYB5R3 DNAJC21\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "mixed excitatory neuron" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: GPM6A MT-CO1 SYT1 CCK SNAP25 CALM1 RPL26 NDFIP1 ARPP19 UCHL1 MT-ND4 MT-ND2 CKB PSAP MTRNR2L12 HSP90AB1 IPCEF1 PKM SNCB SNCA RGS4 ACTB STXBP1 TSHZ2 TUBA1B RORB ATP6V0B NECAB1 RAB6A ARFGAP2 SLC17A7 PPP2CA MAP1B CSDE1 CLSTN2 FXYD6 MT-ND3 CALM3 ACTR10 MAP2K2 NRGN RTN3 CAMK2D NEGR1 SLC22A17 YWHAG USMG5 DYNLL1 TSPAN7 MTRNR2L8 RTN1 GPX4 MT-CO2 NCDN TBR1 PPIA DNAJA1 RPS15 UBQLN2 CALM2 CHN1 PREPL GABRA1 PHYHIP SCN3B LMO3 NDUFA8 STMN1 ATP1A3 PEX5L HPCA SH3GL2 MT-CYB RPL32 EIF4A2 CADM2 TSPYL1 LMO4 SLC12A5 TSC22D1 RPL35 ARL6IP1 H2AFZ RAB3B SYTL2 ZNF385D NR1I3 TBCB UQCR11 RPS3A DGUOK ANXA6 ELMO1 CPNE8 ZCCHC17 DSTN HPRT1 AP3S1 MDH2 RPL41 RBX1 GNAQ ARL8B BTBD10 TSPYL4 TLE4 GNB1 C16ORF13 UQCR10 ARPC5L PPP3CB SPOCK1 PLCB1 MYL12B FAM131B AP1S1 PPP2R2C SV2B MORF4L2 MAGEH1 LDOC1 ATP6AP2 NOV NCEH1 C9ORF16 NPTX1 PPP3CA LRP1B DPYSL2 EFHD2 RASGEF1B GAPDH C1D EIF4G2 GUCY1B3 ATP5O ATP6V1G1 NEUROD1 ACTG1 C6ORF1 HMP19 RPS6 ENO2 SYNJ1 PEBP1 CCDC85B PPDPF PDE1A MT-ATP6 PARM1 PTMA PPP3R1 PFN1 GOT1 SERPINF1 ITM2B RTN4 STX1B KCNAB1 C2ORF74 GRINA C1ORF95 CLSTN1 AURKAIP1 NREP CTNNB1 NGRN RNF208 SYT13 CCDC169 EGR4 BASP1 CADM3 MTCH1 ATP6V1E1 GPR150 RPL21 CAMK4 YAF2 PRKACB SNRPE SEZ6L SUMO1 CLIP2 COX5B TMEM155 PSMA7 OXR1 PTGES3 GABARAPL2 SLC39A10 SCD5 EDIL3 VDAC1 UBL4A RPL38 CST3 MARCKS PI4KA SEZ6L2 APP SYT5 MTND2P28 DMTN NAT8L PRUNE2 VAMP2 PAK1 PRNP APLP2 RAB1A BCAT1 NELL2 HSP90AA1 REEP5 CDK5R1 COX7C MTATP6P1 RP11-632C17__A.1 CISD1 TMSB4X MZT2B RPL15 MRPS7 KCNAB2 COX6B1 SERPINI1 MT-CO3 PCMT1 PIN1 EPB41L3 TMSB10 NDUFS5 LMBRD2 RPL7 PPP1R7 ACOT7 MAP2K4 TERF2IP NGFRAP1 LANCL1 NDUFC2 CLTC CDC42SE2 UQCRB MAST3 RPL11 FIS1 ITM2A BEX2 TPGS2 SYT11 CFI PACSIN1 TRHDE CABP1 NAPB ATP9A TRIM37 COX6C CLDND1 ALDOA ATP2B2 MPI NDUFB1 LDB2 SYNGR1 PPP2R2B C14ORF132 RAB7A KIF21A SLC25A5 LHFP NWD2 ARF3 TPPP ATP1B1 FBXW11 TPT1 CNIH3 CREG2 BNIP3 HSPA8 CAPZA2 TCEB2 MGST3 MORF4L1 NFE2L1 COX6A1 RPL31 SLC9A6 MAL2 VSNL1 ATP1A1 TOMM7 PSMC1 ATP6V1B2 VWC2L HTR1F JUND PNMA2 PPP2R1A SNRPN YWHAB PTCHD4 RP11-111M22.2 FTH1 CHL1 TOX CXXC4 OXCT1 NARS CLPTM1 SRP14 PIK3R1 PFN2 NGEF SRD5A1 LPPR4 ATP6V0C RP11-20I23.1 RPL3 RPL13A RPL18A TUBB PCDHA10 PCDHAC1 PCDHA9 PCDHA4 DNAJC21 TBC1D15\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "mixed excitatory neuron" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: SYTL2 MT-CO1 SNAP25 RTN4 VSNL1 CALM3 CCK RTN3 SPARCL1 TUBA1B NRGN CALM2 GRIN2A AES STXBP1 MT-CO3 TSPAN7 PEBP1 VAMP2 CDK5R1 RTN1 NR1I3 EPB41L3 ATP1B1 RELL2 TMA7 TSC22D1 MT-CO2 CALM1 ENC1 BEX4 ATOX1 PPP3CA COL5A2 NECAB1 USMG5 SYT1 TMSB10 CPE MT-ND4 ST20 MSMO1 CLU MLLT11 SYNGR1 PREPL YWHAZ RPL8 CKB CHRDL1 SERPINI1 COX4I1 CD63 SEPW1 MAP1LC3A PPP3R1 MORF4L1 RPL13 TUBB4A PHYHIP PRKAR1A PIK3R1 TMEM130 ISCU TOMM20 TOLLIP FKBP1A YWHAG RORB SEZ6L2 HNRNPA1P40 TBC1D15 DNAJC21 BEX1 RPL11 GABRA1 NNMT NDRG4 FTL C18ORF32 NPTXR ATP2A2 PACSIN1 GUK1 NDFIP1 GPM6A TERF2IP ATXN10 SLC25A4 SAP18 NGEF RAD23B RAB3A ENO2 ATP5B GLO1 SERINC3 SCN3B SYT11 HOMER1 PKM RPS3A COX6B1 SNCB FAIM2 HMP19 CISD1 PRKCE BLOC1S1 UBA52 APP MIEN1 CPLX2 UBB PNMA1 TKT NAPA STMN3 OR6D1P UBE2N KCNV1 PSMD2 TCEA2 BNIP3 PSMC5 ATP2B4 PPM1A RTBDN OAZ1 TMSB4XP4 B3GNT1 CITED2 UQCRH ARPC5L SNN SKP1 INA DDAH1 LZTS1 PLCB1 RBX1 RPL41 GAP43 PCDH8 VDAC3 TCEB2 RPL17-C18ORF32 CABP1 ARPP19 POLR2I FXYD6 CTNNA2 DCTN1 LMBRD2 PNKP SLC1A2 PPDPF C19ORF10 RPL31 PLD3 MT-ND2 EDF1 ACTG1 HS6ST3 POLR2L TSPYL4 NDUFS5 KIAA1045 RASGRF1 EIF4A2 ETS2 ATP6V1G1 KLHDC3 NREP OXR1 NDUFA11 COX6C ENSA LYNX1 ZNF574 GNB1 PRDM8 PITPNA UBE2D2 C2ORF47 BHLHE40 SLC25A6 GHITM LPPR4 STMN1 REEP5 LMO4 CAMK2G GSK3A CRYM PAK1 LINC01296 RAB2A TUBB4B MYL6B TMEM151A PRKACB PGM2L1 PSAP HPRT1 PCMT1 TMEM59L NDUFC2 FAM127A MT-ND3 BIRC5 IDI1 RP11-111M22.2 PGRMC1 LINC00116 CLIP3 ATP6V1C1 PRNP MOBP CYCS AP2B1 DNER CLTC WSB2 SLC39A10 GDI1 CHN1 BEX5 NHP2L1 RTN4R PITHD1 CADM3 CDK5 MT-CYB KLF10 SLC24A2 MAPK8IP2 PPIA KITLG SPCS2 NSF SLC38A11 NDUFB10 NDUFB5 CDC42SE2 PLS3 HSP90AA1 MAP2K2 CADM2 COX7C SLC9A6 HSP90AB1 OCIAD1 SCN1A ATP1A1 PNMAL1 ITFG1 MT-ND4L ANXA6 PNMA2 KIF1A TXNDC17 TMSB4X MAP2K1 TUBA4A RGS4 BEX2 NACC2 ARF3 AURKAIP1 BASP1 MAL2 RPS15 SLC17A7 ARF5 PRKCB C1QBP PPP2R2C SNRPN NEFL AC244489.1 TUBB3 IDS ALDOA RELN EPHB6 RNASEK-C17ORF49 TUBB ATP6V1G2\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "mixed excitatory neuron" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: TMSB10 CALM2 TMSB4X RPL38 STXBP1 RPS27A TCEB2 PRDX5 RPS6 SNCA MYL6 UQCR11 RTN3 RPL17 OAZ1 NPTN COX4I1 SNAP25 PIN1 NDUFA8 CKB RPL7 COX6A1 NEFL MAGED1 IDI1 COX7C C14ORF2 RPL13A TMA7 PEX5L STMN1 NDUFB3 RPL41 SKAP2 ATP5E ARL6IP1 SYT1 ANAPC11 UCHL1 RPL21 RPL26 ACOX2 RAB3B NDUFS5 RPL32 SERF2 CA10 SYT13 HSPE1 VSNL1 MRPL33 MRPL52 RBX1 PEBP1 LIN7B TOMM7 PJA2 SERINC3 MT1E ENC1 D4S234E SPARCL1 GRIN1 SNAP91 EIF4A2 PI4KA LMBRD2 ELAVL4 EIF1 RPL10A PSMB7 DNAJC21 SCD5 FJX1 GUK1 SNCB BASP1 STMN4 BTNL9 MARCKS RTN1 TXN MTRNR2L12 RPS3A VPS35 DYNLL1 SELM MAP1LC3A PCMT1 PRUNE2 RPL23A ZBBX EXTL2 YWHAZ PRKCB AC244489.1 BSG COX5B GRIN2A NAPB MTRNR2L1 TPI1 SNRPN SRP14 SRP9 FAM86EP GDI1 RPL37A EFR3A LHFP TMEM59L FGF12 TBC1D15 CNTN1 FIS1 MZT2B SLC22A17 BEX4 MBP OCIAD1 ATP5G3 ELMO1 FTH1 BEX1 MTRNR2L8 PCP4 ATP5B PREPL CLPTM1 FAM84A ATP6V1F STUB1 SEPW1 KIFAP3 ATRN PSMA7 NRN1 ARPP19 TPT1 POLR3H RPS4X UBL5 ATP5J2 GAP43 TRAPPC1 RPL8 PFN2 C7ORF50 NDUFA11 HSP90AB1 CABP1 RPL39 LGALS1 NDUFA4 COX6B1 PPP2R1A MT-CO2 CXXC4 TMOD2 CHCHD2 SPTBN1 MRPL51 ACTB FABP3 POLR2I GPM6A CALM3 PRDX2 ACP1 SCN1A RPL31 RORB CALM1 CCDC184 WBP2 MTCH1 THYN1 SYN2 ATP5I DNAJA1 SELT DSTN FAIM2 C9ORF117 NCAM2 PSMB3 RNASEK-C17ORF49 NSF IDS PLEKHD1 HNRNPA1P40\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "mixed excitatory neuron" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: SNAP25 BAI2 RPL23A CKB SCAMP5 RPL26 RPL35 RTN3 ENC1 RPS27A DPYSL2 RAB3B PPP3CA CX3CL1 RPL31 VSNL1 PEA15 UQCR10 SYT1 INPP5F RPL37A NDRG4 PFN2 RAB3A SNAP91 CMPK1 TSC22D1 FTL PINK1 RPL41 HSP90AA1 APLP1 CHN1 FAM163B TOMM7 MORF4L2 KLHDC3 CAMK2G HNRNPA1P40 DNAJC21 ACTR10 WASL FLOT2 ATP5C1 MGST3 OR6D1P RAB11FIP5 RTN4 MAP1LC3A ARF1 VPS35 C11ORF84 TMSB4X SNRPN CLSTN1 PRNP TUBB2A UBE2M NGFRAP1 BEX1 ITM2B ATP9A RFK KCNK1 TBCA PET100 GAP43 KLC1 RAB3IP MT-CYB RRAGA EIF4G2 PIK3R1 MYL6B ATP1B1 DNAJB6 RPL11 GSG1L PCDH8 KCNC3 RPS28 AP2M1 UBC VDAC1 DYNLRB1 MRPL20 PSAP CLTA SLC38A1 RPS5 GPM6A FSCN1 RPS3A FIS1 FAM219A ACTB HPRT1 DPP6 ATP1A1 ATP6V0B ZNF319 PHB RP11-452D12.1 RPS12 NECAB1 CALM3 YWHAB SLC25A6 PRDX3 NEFL RPL17 NFE2L1 PRKCB GDI1 RPL10A ARPP19 HMP19 CRYM RHOB SERF2 RPL32 TMSB4XP4 ARPC4 ARL8A PCDHB18 CDC42SE2 SUSD4 ATP5J CPE MAP1A YWHAQ SNX3 SYT4 RPL18A LL0XNC01-16G2.1 SNCG AP2B1 COX4I1 SCN2B LMO3 HS6ST3 TP53I11 PGK1 NPTX1 NAPB SERINC1 RNF208 C3ORF80 SPOCK1 RPL13A ENO2 WBSCR17 OLFM2 STMN1 ANO3 TMA7 PREPL TMOD2 C4ORF3 TMEM258 PPDPF OCIAD1 CDH13 ATP6AP2 CHMP4B PPA1 RPL36A COX17 STMN3 ATP5G2 FTH1 BEX5 RP11-111M22.2 NPTXR NDFIP1 C12ORF57 ATP2B2 HDDC2 RPS4X BSCL2 RPL13 CFH RP11-20I23.1 ATP6V0C IDS NGRN TF RPL21 AC244489.1 PLEKHD1 TBC1D15\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "mixed excitatory neuron" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MT-CO3 HSP90AA1 MAP1B MT-CO1 MT-ND4 RPL37A VAMP2 PRKCB SLC17A7 SPARCL1 RAB3B MTRNR2L12 SCAMP5 MT3 DPP6 DYNLL1 CFL1 MT-CO2 SPON1 CHN1 ATP1B1 NDRG4 ATP2B2 PSD3 CHMP4B GABRA1 CD99L2 RAB3A KIF21A MTRNR2L1 ITFG1 COX6C PPP3CA YWHAB ATP6AP2 ACOT7 COX17 USMG5 SKP1 SYT13 PEBP1 ATP5B ANXA7 THSD7A C1D LL0XNC01-16G2.1 KCNAB2 TAGLN3 CALM3 NOS1 MAPK1 CDK5R2 SNX3 TXN ATP6AP1 OLFM1 CIAPIN1 ENO2 PGK1 WASF1 MTND1P23 CYC1 SERPINE2 TMSB4X EPHB6 KCNK1 PTPRS NPTN PJA2 EDF1 MT-CYB SOD1 RTN4 KCNA1 TSC22D1 SCN1B CPE CNTN1 PFKP MT-ND2 CALN1 SLC24A2 CALM1 NDUFA12 ZCCHC17 PDE1A NECAB1 CNTNAP5 CAMK4 SCN3B SYN1 ENOPH1 UQCRQ TGOLN2 ATP6V0B ATP5J CLU ATXN10 MMD CLTC PHYHIP PNMA2 TUBB2A PSMD2 CADM3 UQCRH APLP1 SNAP91 NGEF VDAC3 GPR158 YWHAG HOPX REPS2 EPHA6 UQCRB SLC39A10 MPC2 COX7C C14ORF2 SYT1 SULT4A1 NELL2 BEX2 LPPR4 MSMO1 UBE2E3 PGM2L1 RASGRF2 TSPYL1 SV2B COX6B1 MAL2 RPL31 TOMM20 BCAP31 SYN2 YWHAZ PEG10 REEP5 LMO4 PIK3R1 SIRPA ARF1 FKBP1A PLD3 OST4 TSPAN7 DNAJC21 TBC1D15 SERF2 RP11-20I23.1 RPL6 ARL6IP1 RPS10 RPL21 RPL41 ATP6V0C RP11-219A15.1 NDUFA13 BSCL2 RPL36A\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "mixed excitatory neuron" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: CHN1 TOMM20 MT-CO1 SYTL2 GPM6A PHYHIP ENC1 RTN3 WASF1 SYT1 CALCRL PJA2 GOT1 OPA1 CALM1 SNAP25 YWHAG PIK3R1 MT-ND3 MT-ND4 VSNL1 HMGCR NRGN NGFRAP1 MPC2 ATP6V0B RPL32 PEX5L GPR98 CLTC STMN2 BEX1 NDUFA5 STK39 CREG2 GNG2 ZBTB18 MSMO1 MAPK1 THOC7 PNKP PGAM1 BSN SNCA RPL26 NDFIP2 RPL37A TUBA1B DNAJB9 TSPYL4 PFDN4 SCN3B ARL6IP5 MT-ND2 ARHGAP35 PRNP DCTN1 FKBP1A MED31 GAPDH NELL2 AP3S1 OLFM2 CSDE1 NRCAM FAM219A LZTS1 JUND PPIA PRKCB TMEM35 AP2M1 C12ORF57 CBLN4 MAST3 CCDC25 LDOC1L LMO4 UBL5 NAPA PDE1A CHCHD2 DNAJB6 MAP1B MT-CYB UCHL1 FKBP8 UBB WBSCR17 MTRNR2L1 OCIAD1 EIF4G2 NRSN2 TESPA1 SUB1 CALM2 VAPB SYT3 PRKACB STMN1 MT-ND5 ARL6IP1 NFE2L1 ACTG1 VPS35 RTN4 PRKAR1B TPD52 NDUFS5 TCEB2 ZNF365 DIRAS2 EPS15 RP11-111M22.2 MT-ATP6 KCNMB4 COX7A2 LYNX1 OXR1 MIR6723 RASGRP1 ATP2B2 NDUFA13 SUCLA2 SCN2B RPL7P4 TOMM7 CRIP2 PFN2 MT-CO3 NUDT4 AGA GRINA ANO3 CNR1 DYNLL2 MTPN CFH SERF2 RNASEK-C17ORF49 MTRNR2L6 TMEM191A PCDHA10 PCDHA4 PCDHA9 PCDHAC1\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "mixed excitatory neuron" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MTRNR2L12 MTRNR2L1 MT-CO2 SYT1 MT-ATP6 MT-CO3 MT-ND4 COX7C CPLX2 GABRA1 SYNJ1 GPATCH4 NDUFV1 MT-ND3 NDUFA13 PRKCB RPL37A CALM1 PRKACB MT-ND2 MT-CO1 MTRNR2L6 PNMAL1 FGF12 MTATP6P1 VSNL1 UBE2D2 B3GALT2 NRCAM ATP1A1 GTF3A PDE1A YWHAB CDK5R1 RTN1 MT-CYB RAB3B C14ORF2 MRFAP1 AP3S1 LMO4 PCDHA4 CYFIP2 NECAB1 SUMO3 CKB PGM2L1 KCNC3 AP2M1 VSTM2L UHMK1 PIK3R1 TM2D3 GNAQ PEBP1 ENC1 SLC39A10 ATP6AP2 TMX4 NDUFB5 MFGE8 EPB41L3 PTMA KITLG ATP2B4 KLC2 LMBRD2 LINC01296 KLF10 FBXW11 FAM84A NDUFA5 WBP2 RPS4X SYTL2 ROBO2 CAMK4 HTR4 DIRAS2 ATP9A PCDHAC1 MTRNR2L8 CA11 RTN3 CHN1 C1ORF52 AKAP12 COX6C B3GNT1 RPS26 KCNV1 SLC12A5 SLC17A7 SYNGR1 UQCRH DRAP1 HSP90AB1 MYO10 CALM2 CADM3 OLFM1 MIR3916 RTN4 PNKP ITM2B PI4KA CAMK2G PSD3 BAI2 BSG MAP2K4 ATP6V0C EPHB6 RP11-219A15.1 CFH RP11-20I23.1 AC244489.1 TBC1D15\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "mixed excitatory neuron" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MT-CO1 PRKCB PRNP ATP1B1 MT-CO3 RPL37A RTN3 COX4I1 PFKP YWHAB GPM6A YWHAG MTRNR2L1 EPDR1 VAMP2 RP11-219A15.1 SNAP25 CFH SYNPR HK1 SYT1 TUBA4A SMIM13 SLC7A5 RPS28 PEBP1 ATP5G2 TMA7 CREG2 RPL41 RPL12 FTH1 PRKAR1A NDUFB2 RP11-111M22.2 GRIN1 RTN4 MAP1A GRINA LDHB ACTG1 GTF2H2C_2 PPP2CB CALM1 MT-ND4 ITM2C NCAM2 PKM ATP5B GUCY1B3 SPRYD3 BIRC5 ENC1 SERPINE2 LRRIQ1 MTRNR2L6 GCNT1 PPARGC1A BCKDK CKB SGCD SPTBN1 ARF5 PTPRZ1 SEMA3A RPL31 EIF4A2 RPS15 ATP1A1 NRN1 HCN1 ARSE PSMD12 LMBRD2 ATP9A DRAP1 CNTN1 SERPINI1 OLFM1 SLC12A5 WASL CBLN4 TUBA1B ATP5J NDFIP1 SULT4A1 SEZ6 VPS35 NRGN ZNF365 APLP2 TRIM59 GDI1 MRPS7 SCAMP5 CADM3 TSPYL1 MT-ND1 APLP1 SYNGR3 MFGE8 SLC8A2 NMNAT2 NPM1P30 USMG5 ZNF385D RAB3B SYTL2 SERF2 RPL13A ARFGAP2 GPR98 TBC1D15\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "mixed excitatory neuron" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: SYT1 HSP90AA1 TMSB4X SPARCL1 CHN1 TBC1D15 TUBA1B STMN2 CALM1 C19ORF70 MYEOV2 CLSTN1 APLP1 RTN4 CCK CLU NEFL KIF1A GAPDH PKM SERF2 MT-ND3 PRKCB MT-ND1 COX6B1 DGKG GABRA1 STMN1 UQCRH MT-CO1 THY1 SEPW1 RPL35 TM2D3 ARFGAP2 RPS27A PTHLH PRSS3 COX7C TUBB2A FXYD6 VDAC1 RAB3A ATP1A3 ELAVL2 NUAK1 RHOB HINT1 NDUFC2 GUCY1B3 EID1 KIF5A MAP1B ATP5F1 PSMA7 UHMK1 BCL6 RP11-111M22.2 MT-CO2 ATP5E RTN3 OCIAD1 TOMM7 PSMD8 SULT4A1 LINGO1 PITPNA TPI1 NDUFB11 RPL32 SOD1 APLP2 WASL PEX5L DCTN1 ATP6AP1 IGFBP5 UQCRB EIF1 TOMM20 S100A6 SV2B RPL12 ARL6IP1 APP PGAM1 ATP5J SERINC3 UROS CPLX2 C16ORF13 KLHDC3 SYNGR3 SNAP25 SERPINI1 ATP5O OPN3 MTRNR2L8 ARL1 RTN1 NELL2 COX6C FKBP1A DKK3 HOMER1 SYN2 CADM2 DNAJB6 PNMA2 SCG2 SUMO2 ENC1 NECAB1 SLC38A1 KCNAB2 DCTN3 TAGLN3 NHP2 RPS12 NFIA MPC2 RPL8 SNCA ATP1B1 SCN3B NAP1L3 PEBP1 LANCL1 MRPL33 C14ORF2 PEG10 C4ORF3 NDUFB7 RPS4X VAMP2 NCDN GAP43 SERPINF1 SLC22A17 BRK1 PGK1 UCHL1 SRP14 BCAP31 CYCS NAA38 EPS15 GYG1 NDUFA4 CTNND2 RAB6A RELL2 GHITM BCAT1 RPL3 CREG2 ARPC4 RAB6B ITPR2 NDUFAF3 NAPB TMSB10 CHCHD2 PTPN20A UBE2E3 MT-CO3 RPL31 HSPE1 CALM3 TMEM150C RP11-219A15.1 RPL17-C18ORF32 RPL17 SKP1 RPL15 NSF GABARAP RPL18A MTATP6P1 ATP6V0C MT-ATP6 RP11-20I23.1 RPS15 RPL13A TUBB RPS26 RPL21 SYTL2 RAB3B DNAJC21\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "mixed excitatory neuron" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MT-CO2 MT-CO3 MT-CO1 MT-ND3 MT-ND4 MT-ND2 MT-CYB SNAP25 MT-ATP6 GPM6A CALM2 MT-ND1 PPP3CA MAP1B MTATP6P1 KLC1 VAMP2 TMEM130 PFKP NAPB YWHAG CABP1 CCK VSNL1 PTPRS ATP5H FAM131B GAP43 ATP6V1A GAPDH CHN1 PREPL PHYHIP YWHAZ WBP2 CADM2 RPL31 DIRAS2 OLFM1 HSPA4 CTNNB1 CALM3 THY1 ATP2A2 VSTM2L SYTL2 CLSTN1 PRKACB HMGCR KRAS MTRNR2L1 RTN4 RAB3B PSMB7 TSPYL1 RTN3 ATP6V1B2 PRKCB SYT1 RPL35 NELL2 COPS8 PRKAR1A PPP2CA PJA2 SYN2 SSTR1 PCSK1 CAPZB NRGN UQCRFS1 SERF2 TUBB2A MDH1 STMN2 NCDN GORASP2 SUMO2 SH3BGRL2 ELAVL4 CDC42SE2 FTH1 HS6ST3 GHITM WBSCR17 HNRNPH2 SUB1 AKAP12 SLC22A17 NFE2L1 HPRT1 ATP1B1 RHBDD2 TSC22D1 PFN2 GNB1 KREMEN2 YWHAH COX6A1 KIFAP3 MTPN SLC2A1 BSN JOSD2 CAMK2G COX14 PSENEN RAPGEF5 C19ORF10 KLC2 FAT3 CTNND2 LDB2 FKBP8 BCAP31 TBCA CYP26B1 ACTG1 CSDE1 ARPC4 COX5A PPIA TPI1 TMEM59L CNR1 NDUFC2 FXYD6 DMTN ENC1 BEX2 MRPL33 LYNX1 PPA1 SSBP3 USMG5 UBE2V2 ACTB ATP1A1 CACNG3 TBR1 KCNA2 RPL23A GDI1 SLC25A4 PRNP SEZ6L2 ANAPC11 BNIP3 ARL6IP1 RAB3A MFSD6 GSK3A ARF3 EFR3A NREP TM2D3 PTK2B RORB TMEM14A DGUOK CREG2 SCOC RPS4X CPLX1 VAV3 TOMM20 SELT MAP1LC3A CBX6 RPS2 KIF21A NGFRAP1 BRK1 SPCS2 PET100 MT-ND5 PDP1 ARL6IP5 NECAB1 RPH3A ITM2B PGAM1 CAMKK2 OAZ1 PSD3 EPDR1 NFIA RTBDN RGS4 CAMK2D ARPP19 NPTN KIF5A PEX5L VDAC1 ITFG1 DYNLL1 PRKAR1B MAGED1 SYNGR1 UQCRC2 PGM2L1 UHMK1 GOT1 RAB11A UCHL1 ANAPC13 RPL10A CPE EPB41L3 C19ORF70 CMPK1 LMBRD2 EDIL3 PRKCG SPARCL1 ALK CRYAB CLU OPA1 SNRPE MAP7D2 SNCA GRIN2A RPL3 RPL13A ALDOA MTRNR2L6 HSPB1 HNRNPA1P40 PLEKHD1\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "mixed excitatory neuron" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: SNAP25 MT-CO1 ATP1B1 RTN3 SYT1 CHN1 CCK PPP3CA RTN1 MT-CO2 VSNL1 SLC12A5 RTN4 CLSTN1 RPS28 CALM2 BASP1 NECAB1 CLU SYT4 PRKCB PSAP MT-CO3 DYNLL1 TUBA1B SV2B PRNP ENC1 PKM MT-ATP6 ARPP19 MTRNR2L12 SLC24A2 NDRG4 YWHAG STMN1 NGFRAP1 ACTB APP ATP6V0B TBC1D15 KIF1A TOMM20 RNF11 STMN3 ATP2A2 GRIN2A ATP6AP2 ATP6V0E2 FAIM2 CAMKK2 YWHAH FTH1 DIRAS2 TSPAN7 PTPRS PIK3R1 DKK3 GPM6A WASF1 STXBP1 RPL15 PDP1 ENO2 SNRPN SPARCL1 CALM1 RPL41 NDUFV1 RPL13 MTRNR2L8 ITM2B NRGN SEPW1 DPYSL2 OCIAD1 ARL6IP1 MT-CYB RAB3B SYTL2 CHL1 HMGCR ATP5I SLC25A11 NPTX1 VAMP2 ACTR6 MTRNR2L1 MAST3 DNAJA1 ATP6V1B2 PPP1CB KIF21A BAD CKB APLP1 NCALD CISD1 TLN2 KIF5A LMO4 NUAK1 CTNNA2 IGSF21 MDH1 SLC8A2 OPN3 HSP90AB1 PLD3 MT-ND3 GABRA1 ZNF365 TOLLIP ITFG1 NDFIP1 SARAF MT-ND1 RPL18A BEX1 PELI3 RP11-111M22.2 ATP9A CFL1 STMN4 YWHAB COX7A1 C1ORF52 HIGD1A BSN COX6A1 COX6B1 SYNPO GDI1 CRIM1 DYNC1I1 SLC22A17 PFN2 PGRMC1 RPL26 HOPX MT-ND4 SERPINI1 OLFM1 CHGB BEX5 NELL2 RAP2A SELT TMSB10 ASAP1 HSP90AA1 LMO3 CD59 KIF3C PHYHIP PRKAR1A YWHAZ PRKACB EPHB6 HSPA8 NEGR1 MARCKS TMSB4X EGFL7 NFIA TCEB2 MT-ND2 ATP2B2 OPCML SLC39A10 SYNGR1 PSENEN SYT11 RP11-20I23.1 ATP6V0C SCOC RELB PTPRN2 TENM3 EIF1AX RPL35 ABRACL DYNLRB1 TSC22D4 ATP6V1A PNMAL2 MAGEH1 KCNAB2 NUDT21 APBB1 SERPINF1 CD99L2 QDPR THY1 REEP2 FXYD6 PVRL1 EFR3A CABP1 B3GNT1 BAG4 CBLN4 MSMO1 BRK1 NAPA CDK5R1 RAB11FIP5 POMP LAGE3 FAM86EP RGS4 PINK1 CPLX1 TSC22D1 DNAJB9 UBL5 SEZ6L2 PRUNE2 INPP5F IDH3A NFE2L1 ID2 SSBP3 BEX4 BTBD1 FABP5 FAM127A TMOD2 SNCA KLF10 VGF PPP2R2B PTPRN POLR2I ANAPC13 SKP1 C11ORF31 NAPB HPRT1 AP1S2 VDAC3 SMIM13 ZFAND5 OAZ1 PGAM1 EHD3 RPL23A HS3ST5 NREP DYNLT3 SH3RF1 SCN2B TBR1 PGK1 NSF SYT13 CCDC85B STX1B MRPL20 BEX2 MYL6B CLSTN2 BAALC SYNGR3 UQCRB NPTN TMEM14A PCDH17 TMX4 FIS1 TRIM37 MAP1B RABAC1 MORF4L1 CAP2 SUMO2 SNX10 ACTR1A CNTN1 MPC2 PRDX2 CTNNB1 PRDX1 UBE2QL1 ARF5 LINGO1 DDAH1 ALDOC FBXO2 CYFIP2 CD24 YIPF3 BSCL2 SPOCK1 NDUFB10 SEMA5A BANF1 PFKP ETFB TM2D3 BAI2 ATP1A1 HS6ST3 ARL2BP NCDN MTATP6P1 PNMAL1 SCN3B PI4KA SPTBN1 BEND5 REEP5 FAM163B ERH RHBDD2 SCN1B PRKAR1B PSMC3 BCAP31 ARL8B C20ORF24 MT3 RPL7 ETS2 GHITM C4ORF3 CADM2 ARHGDIG CAMK2G RASGRF1 HOMER1 RAB3A ATP6V1E1 HS3ST2 MTPN KLHDC3 COX6C FXYD7 EIF1B SLC17A7 TXN RAB1A RXFP1 ESYT1 LDB2 DUSP6 RFK ATP5F1 CCDC184 LIMK1 ARL6IP5 CNR1 ATP5B RAB11A ADAM23 HN1 UBE2M DHCR24 ANXA6 MYL6 CDK14 KIFAP3 SERINC3 AK5 GPX4 ATP6V0D1 CRIP2 IGFBP2 BSG RAB6B LYSMD2 ACTG1 UBB SRP9 FGF12 ARF3 TMEM151A KLC1 SLC10A4 APLP2 SLC6A17 LAMTOR5 TSPYL1 GNB1 CA10 RPL32 MAP2K2 SYN2 CTSD LPPR4 AP1S1 ATP1A3 EEF1A2 UQCRQ EIF4A2 VEGFA PCSK1N USP5 CAPZB ANXA4 CADPS2 PRKCE EPDR1 PGM2L1 CERS6 GABARAPL2 GRINA PNMA1 RPL8 MRPS7 AP2M1 HINT1 BIRC5 ATRN TPI1 CALM3 PPP3CB PRELID1 SYT5 PTK2B MAP2K1 LMBRD2 UBA1 CHST8 PPDPF KCTD12 SNRNP25 OLA1 NPTXR NDUFA13 USMG5 MRPL55 FTL NDUFA1 NGEF TMEM59L ATP6V1G2 MIF RNASEK-C17ORF49 IDS CFH CYB5R3 RPL17 RPL17-C18ORF32 RP11-219A15.1 RPL36A TUBB PCDHGA10 PCDHGA6 PCDHGA5\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "mixed excitatory neuron" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: SYT1 TMSB10 SNAP25 MAP1B CALM2 CHN1 STMN1 RTN3 CADM2 VSNL1 MT-CO3 MT-CO2 STMN2 ACTB TUBA1B PRNP MT-ND4 MT-CO1 CALM1 RTN1 FTH1 CHL1 CLSTN1 TMSB4X GPM6A TSPYL1 NRGN RPL41 TCEAL7 SLC1A2 PRKACB GAPDH PCP4 PRKCB ATP9A SKP1 SUMO2 YWHAZ C14ORF2 DSTN PSD3 PIK3R1 TSC22D1 ARL6IP1 DKK3 KCNV1 CAB39 NEFL DPYSL2 RTN4 FAM3C SYN2 ENO2 TUBB2A RPS15 HPCA RAB3C YWHAB ENC1 RPL35 PGAM1 SLC39A10 PTMA RPL38 BSG REEP5 ATP6V1A PFN2 COX6A1 SPARCL1 FXYD6 ATP6V0E2 THY1 PREPL COX7C SNCA GDI1 CBX6 RAB3A HSP90AA1 HMGCS1 SLC22A17 RGS4 MORF4L1 GABARAPL1 TM2D3 SEPW1 RPL23A TMOD2 GNAQ EIF4G2 SNX10 PRDX2 NDUFA4 GNG3 NRCAM MAP1A VAMP2 OLFM1 DIRAS2 PPP3CA SYT11 YWHAG SOD1 DCLK1 SLC17A7 RPL31 MT-ND2 CAMK2D MT-ATP6 RAB6A TSPAN7 ARF3 ITFG1 GAP43 SYTL2 TBC1D15 TMEM14A UBB CABP1 SEZ6L2 ARL6IP5 APLP1 GRINA HSP90AB1 ACTG1 ACTR6 ATP5I GPX4 MT-ND5 ATP2A2 DPY30 TRABD2A SYNGR1 PSAP SSBP3 KCNC2 GOT1 PTPRT PPP1CB ATP5J UBL5 PPP2R2C SRP14 ATP1B1 SLC24A2 PRUNE2 MT-ND4L AK5 ATP5B NREP FTL SCOC KLC2 PNMA2 HTR2A PRKCE NAP1L3 CPE NGRN PPP3CB SERF2 NAPB WASF1 HSPA8 ATP6V0C C20ORF24 NDUFB10 RPL15 SARAF GRIN2A PDE1A LIMK1 ATXN10 APP SCD5 RPL7 NPTXR FKBP1A SYNGR3 HINT1 MT-CYB TMEM65 ADD2 GRM3 MGST3 PDP1 STXBP1 FBXL16 LYNX1 RAB6B STMN3 RBX1 EIF4A2 PGM2L1 SYT4 RORB CX3CL1 MBP TCEB2 CDK14 COX4I1 RPL39 PEBP1 TRHDE PHYHIPL MT-ND3 BEX4 RP11-219A15.1 CLIP3 MTRNR2L1 CFL1 RP11-20I23.1 AZIN1 MDH1 ATP2B2 PKM CLSTN2 OCIAD1 MT-ND1 TMA7 BASP1 DYNLL1 MAPRE2 SNAP91 KLC1 PJA2 TUBA1A AURKAIP1 MAP4 CERS6 MZT2B EIF1AX RLIM MIF CDK5R2 PTPRS PRKCG NECAB1 RAP1GAP2 SLC9A1 COMMD6 MTRNR2L12 OPN3 FSCN1 TRIM37 COL12A1 MAST3 TPI1 REEP2 ZMAT2 TUBB4B UBL4A GDF10 DYNLRB1 FAT3 UROD GDE1 SMAP2 ELAVL4 ZFAND5 FAM189A2 CALM3 SDHAF1 RPS5 RAB27B CLU NAP1L2 CDKN2AIPNL RPS3A ATP6V1C1 ATP6V0B DGUOK JUND DLC1 BAALC NAT8L TENM3 NRN1 ITM2B RAB11A ARPP19 SYT13 KLHDC3 CPLX1 SNAPC5 RPS28 FAM19A2 TERF2IP PET100 MAPK1 CACNG3 RPL3 ITM2A CDS1 PFKP MAP1LC3A SLIT1 BCAP31 MT3 OXR1 PSMA7 TCEB1 EHD3 SH3GL2 LANCL1 GPR158 PARM1 ATP6V0D1 RP11-111M22.2 H2AFZ INPP5F CDK5R1 MAP1LC3B SNRPE CAMK2G CCDC115 ID2 GABRA1 FAIM2 FAM131B PRKAR1B TMEM59L DNAJC5 CHGB MKX EGFL7 SIRPA TRAPPC1 ADSS TBC1D7 GLIPR1 VAV1 ARL8A C6ORF1 SERINC1 LINC00116 FAM219A CRKL COX6C STX1A TESPA1 NAP1L5 UQCR11 TP53I11 SCN2B PINK1 PEF1 PSMC1 PAK1 PDE1C FKBP8 SDCBP TCEAL5 STRAP SH3BGRL3 CISD1 ADAM23 ASNA1 ATP6V1G1 PROKR2 MTPN OPCML TMEM70 RPL37A HDDC2 FSTL5 FAM163B BSN CDC42SE2 ALDOA IPCEF1 SERPINI1 PSMD8 BAG4 RHEB LGALS1 RPH3A TTN KIF21A NEFM ATP1A1 ACP1 PHYHIP NSF UQCRH IDI1 CD59 MORF4L2 MAL2 SH3BGRL2 ANO3 ARHGAP35 CLTC HBA2 C18ORF21 NDFIP1 PSMD2 RHOB COX14 CACNB1 DIRAS1 BCAT1 PCSK1 RANBP1 NDUFA1 PRDX3 TPPP NDUFB7 SV2B NCBP2-AS2 UBC ARF5 RSL24D1 DDAH1 SERP2 BSCL2 ATP6AP2 PIN1 PPP2CA CXXC4 OAZ1 RNF208 RHBDD2 TMEM151A SNX3 RAB2A DNAJB9 CEND1 PAFAH1B2 AP2M1 VDAC1 C3ORF80 PLCB1 UBE2M RNF11 LMO3 APLP2 TOMM7 PEPD YWHAH NDUFB5 MMP24-AS1 KCNK1 NDUFC2 RPL6 ATP6V1E1 DPP6 RXFP1 ETV1 SLC30A3 YWHAQ ATP2B4 SUB1 EPHB1 SUCLA2 LRMP FAM134A MAP2K4 C2ORF74 RPL10A SAP18 NDRG4 OAT PRDM8 NHP2 NDUFC1 B3GALT2 ATP6V1F NDUFV1 ELAVL2 SLC25A11 ARL8B SLC9A6 EIF1 UCHL1 RPL26 PLD3 MTRNR2L8 GLO1 PNMAL2 CD101 B3GNT1 PMEPA1 NDUFS5 FARSA CDC37 MARCKS NEUROD6 CHP1 CORO2B TOMM20 RPS2 MTRNR2L6 GMFB AP1S1 MTATP6P1 CCDC124 TMTC4 NDUFA5 GSK3A TSPYL4 GPR88 PEA15 SPOCK1 BEX2 KCNAB2 CAMKK2 CDH7 MAOB RAB4A UBE2V2 LDB2 SLC8A2 FAM174A SERPINF1 TIMP2 KCNMB4 PACSIN1 MRPL52 GABARAP DCTN3 WBP2 ATRN WBSCR17 RPL13A SNRPN SEZ6L MFN2 COX7A2 GNB1 RAP2A HCN1 GLRA3 CNTN1 SLC25A22 POLR2K RPL36A TUBB3 C11ORF31 APOLD1 ATP6V1G2 RPL21 PLEKHD1 HNRNPA1P40 TUBB PCDHAC1 PCDHA10 PCDHA9 PCDHA4 PCDHGA5 PCDHGA6 PCDHGA10\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "mixed excitatory neuron" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MT-CO1 MT-CO3 MT-ND4 MT-CO2 MT-CYB MT-ND2 GPM6A MT-ND3 PREPL MT-ND1 SYT1 SV2B PRNP ZBTB18 MT-ND5 CYB5R3 PLCB1 GAPDH PPP3CA MT-ATP6 PHYHIP PTGES3 NRCAM RTN1 MAP1B ROBO2 MTRNR2L1 ENC1 NDRG4 HPCA ATP1B1 BAG4 YWHAG ESCO2 IMMP1L PRKACB NDUFA13 DIRAS2 KLC1 YJEFN3 ARPP19 SNAP25 FAIM2 MTRNR2L12 SARAF PCMT1 YWHAQ ARL6IP1 LDB2 SYT4 SKP1 STMN1 MARCKS GDI1 NFE2L1 IDS RPS15 SLC24A2 RAB6B PJA2 SERPINI1 SLC39A10 MAPK1 MTRNR2L6 SYTL2 KIF5A HSPA4 PCDH19 ARC CKB HINT1 PPM1A DYNLL1 LDHB DNAJB6 NAP1L3 KCNK1 PACSIN1 RPL37A SNCA TMEM59L AES CLU RPS4X COX5B BEX4 ARL2BP CA11 PTMA TCEAL7 RAP1GAP2 CCDC85B TMSB10 MFSD6 OAT GLRA3 ATP6V1E1 MAP4 STXBP1 MTX3 WBSCR17 SUB1 SYN2 MAPK8IP2 SSTR1 SPARCL1 SERPINE2 CDS1 HK1 CLTC ATP1A1 HMP19 UBA52 MORF4L2 SNCB MAP1A FKBP1A SCN2B ZFP36L2 TOMM7 GHITM BAI2 SYN1 CORO2B SLC7A5 RP11-20I23.1 APEH RP11-111M22.2 NUAK1 FASN NDUFB7 ZFAND5 UTRN C1ORF233 MTPN MAP1LC3A TPPP SLC25A6 VWF HSP90AB1 TAGLN3 CLDND1 ARL4C RTN3 RPL18A NRGN BTBD1 VSTM2L NAA38 CHN1 HPRT1 CABP1 VSNL1 ANXA6 ADAM23 ATP6V0E2 WDR47 STMN3 EIF4A2 TOMM20 CTNNB1 SLC22A17 CCK PPDPF EIF1AX ELMO1 RPL41 TCEB1 CNTN1 TMOD2 PCDHA10 DYNLL2 NMNAT2 EGF YWHAZ NECAB1 INPP5F ZBTB20 PKM ATP2B4 UQCRB UQCRH TUBB4B FXYD6 ATP6V1F NAP1L2 NBL1 SERINC3 WI2-1896O14.1 AZIN1 MRPS21 UROS SCD5 NFIA COX7A2 VEGFA KCNMB4 CLEC2L IPCEF1 TRIM37 PRRX1 WASF1 ETV5 LGALS1 UCHL1 TMEM132D HCN1 NDUFA1 WBP2 ATP6V0C ADSS PEX5L BEX1 YWHAH SYT11 COX7A2L UBL5 CALM3 CADM2 RPS28 FTL VCAN KIF21A DCTN1 NELL2 BSN PLD3 CDK5R1 PEBP1 ITFG1 TSPYL1 PCSK1N TM6SF1 SLC1A2 RAB6A RPL31 NCEH1 LRP1B RLIM LMO3 RPL36A PEA15 GADD45B NSF RPS10 NGRN RPL21 PVALB RP11-219A15.1 AC244489.1\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "mixed excitatory neuron" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: RPS28 RPL21 SNAP25 TMSB4X CALM2 MT-ND2 PRNP TUBA4A MT-CO3 GAPDH RPL26 ZNF385D TSPAN7 RPL32 ATP1B1 PNMA2 RP11-111M22.2 CHN1 GRIN2A RGS4 VSTM2A KRAS ID2 MT-CO2 PTMA OLFM1 RPL38 VSNL1 PPP3R1 NRGN CHL1 BRK1 APBB1 MT-CYB COX6B1 SELM KLHDC3 RPL41 MAPK1 RPL31 SRP9 PSAP TBC1D15 NCDN HOMER1 GOT2 SNX3 GHITM ADD2 NRCAM MFSD6 BEX2 ARPP19 PFN2 PJA2 STMN2 PGD CALM3 COX6A1 ZNF547 RPS10 MLF2 RPS12 NCALD RTN1 RPL3 HINT1 MDH2 SMAP2 TIMP2 UBE2N TSPYL4 PSD3 AP2M1 ITM2B NARS SMS NFIA CMAS RTN4 TMOD2 SULT4A1 PPP3CA CST3 ACTG1 DYNLL1 DLD C12ORF57 UBE2L6 CADM2 VEGFA MT-ND1 OXCT1 SEC61G ZNF208 ARL6IP1 CDK5R1 RPL37A ATP6V0B CAMKK2 NDRG4 EIF4G2 VPS35 GDA DNAJB9 PSMB5 PSMA7 CLDND1 BAG4 PLCB1 PLD3 CLTC RAB3C MGST3 PSMB7 TMEM191A NHP2 RNASEK-C17ORF49 SNX22 FKBP1B ADAM23 ANXA4 MAGED2 CYCS YWHAG ARL8B TMEM59L YWHAB MYEOV2 ACTB TESPA1 ELAVL4 PDCD5 MT-CO1 HSP90AB1 TM2D3 FTL BEX1 NREP PPP2R2C GNG3 NPTXR NDUFC1 NRF1 TSC22D1 MAGEH1 FXYD7 RAB2A SYT1 ABRACL CTXN3 ATP6V1C1 PPP2CA RPL13 NAPB COX7C SLC24A2 ARF5 PEBP1 VSTM2L GABRA1 TCEAL7 UBC RPL11 MYOM2 SKP1 PDGFD GTF3A CPE RPL17 CRIP2 SLC1A2 NECAB1 NDUFA12 OAZ1 MTCH1 SNRPN RPL7 ATP6V1E1 IDS PCDHGA5 PCDHGA10 PCDHGA6\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "mixed excitatory neuron" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: STMN1 CALM1 SYT1 RPL31 PKM RPL38 ATP1A1 JUND VAMP2 HSP90AA1 ZFAND5 NGFRAP1 PPP3CA VSNL1 MT-CO1 RPL36A RPL13A FAM198B UBB ARPP19 OLFM1 PEBP1 SNAP25 OAZ1 CALM3 RPL23A CCK SPARCL1 NDUFS5 PFN2 RPL39 RPL13 ACTB RPL26 DYNLRB1 TMSB4X PLCXD3 MT-CO3 CFL1 PREPL RTN1 SYTL2 RAB3B NDFIP1 MT3 NDRG4 HOPX ACTG1 OAT DCC CTSD PRKAR1B UBL5 RPL7 TERF2IP KCNMB4 NHP2L1 SPCS2 GABRG1 VSTM2L CA11 PPP1CB SAP18 MPPED1 SERPINI1 PPIA SNX3 SKP1 TSPAN7 MT-ND4L POLR2J SUCLA2 GHITM APP MORF4L1 SYT4 GOT1 FAIM2 TCEAL2 CALM2 NDUFB2 MRPS21 SNRPN ATP5G2 UQCRB DNAJB6 AZIN1 C19ORF43 SNCB RPS28 POLR2K RXFP1 ATP6V1F STXBP1 CISD1 TUBA4A GABARAPL1 MGST3 MT-ND4 RPL41 CADM2 RAPGEF5 DUSP6 ELAVL4 RTN4 PRDX2 UCHL1 FTL TUBB2A PRKAR1A PRNP MAL2 MT-CO2 C14ORF2 RPS6 ZNF365 PHLDB2 APLP1 TCEA2 PSMD2 ARL6IP1 SNX10 PIK3R1 LINC00087 IMMP1L INA ELAVL2 COPE KIF5A TUBA1B TMSB10 DYNLT3 EXTL2 ISCA1 UBC MT-ND2 GPM6A RHBDD2 OPCML RP11-111M22.2 DMTN HMP19 BRK1 PHB HMGCR CTNNA2 RPL37A NDUFB1 RPL17 SMIM12 SLC9A6 GABRA5 CREG2 ATP6V1A GUK1 KCNV1 RAP1GDS1 ADAM23 PGAM1 POMP HDDC2 RPL32 NDUFA2 RAB3A MDH1 CADM3 STMN2 RAB1A KCNF1 PJA2 ATP5C1 PNMA2 NEGR1 HSP90AB1 MYL6B SLC6A1 SYN2 UBQLN2 TSHZ2 YWHAQ DYNLL2 UQCRH PFKP SLC30A3 DPYSL2 NDUFV1 MTRNR2L12 PRELID1 CNTN1 RPL18A DNAJC21 ARF5 NUDT4 TBC1D15 ATP6V1G2 GTF2H2C_2\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "mixed excitatory neuron" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: SNAP25 NPTN PRNP OR6D1P SPARCL1 SERF2 CCK SMIM13 UBB SULT4A1 CDK5R2 RP11-111M22.2 SCN3B ENC1 ASAP1 ZNF385D HSP90AB1 PHPT1 ZFAND5 DRAP1 ARL6IP5 NGFRAP1 BIRC5 IGFBP5 PPP2R2C ATP9A PVRL1 MAGEH1 GPR158 SYT3 RAB6B NCDN COX7C MTRNR2L12 STX1B CHN1 RPL13 TERF2IP UCHL1 MAP1B ATP5I APLP1 PNMAL2 CDKN2AIPNL ATP2B4 CALM2 GALNT14 SPON2 KLHL5 SLC17A7 ATP5J NR1I3 NAT8L CNIH3 C19ORF53 GLO1 COX6C NRCAM LINC00116 GNAQ RPL38 NPTXR SMS CHP1 TUBB2A VDAC3 C16ORF13 PI4KA REPS2 ACTG1 MPPED1 ISCU NECAB1 TLN2 GNG3 PPM1A SYT4 ARHGDIA CLSTN2 CREG2 ATP5J2 SPDL1 TPT1 AP1S2 MFSD6 MAP2K2 ITFG1 MZT2B NRSN2 RTN1 NDUFB4 OAZ1 GOT1 CA11 RGS4 SEPW1 BAI2 MTCH1 CTNNA2 GABRA1 NDUFA1 PPP3CA C11ORF31 RTN3 HSPA8 EGR1 LMBRD2 CORO2B ATP1B1 OAT C7ORF50 DUSP6 AP2B1 SLC6A1 BSN TF RAB3B SYTL2 MT-CO1 MIR6723 NUDT4 RP11-219A15.1 DNAJC21 TBC1D15\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "mixed excitatory neuron" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MT-CO1 SNAP25 MT-ND3 PPP3CA MT-CO3 ATP1B1 MT-CYB MT-ND1 MTRNR2L1 MT-ND4 MTRNR2L12 MT-CO2 PTMA CHN1 MT-ND2 MT-ATP6 MAP1B RTN3 CALM2 ACTB YWHAG RTN4 CALM1 CKB ANO3 HSP90AA1 CLU MAPK1 MT-ND4L MTRNR2L8 NRGN ENC1 CAP2 GABRA1 SLC12A5 SNRPN GPM6A ITM2B UCHL1 YWHAZ TSPYL4 PIK3R1 HMP19 VAMP2 PRNP SV2B MTATP6P1 MTRNR2L6 INPP5F MCHR2 NPTXR NFE2L1 CLSTN1 THY1 IPCEF1 BSG PNMA2 CAMK2G CHGB SPARCL1 SYT4 MORF4L1 RGS4 THSD7A ZBTB18 TSPYL1 CAPZA2 NDFIP1 CEND1 ZNF385D NDRG4 ENO1 DCLK1 WASF1 MAP2K1 VSNL1 ATP6V1G2 SCOC MT-ND5 ITFG1 IGFBP5 STMN2 TCEAL5 CREG2 TMSB4X PHYHIP RPH3A NAT8L NEFL TAGLN3 GUCY1B3 ZFAND5 NSF IDS RP11-20I23.1 ATP6V0C SFRP1 ARL4C C1QL2 RAB6A PGK1 PPP2R2B TIMP2 HPRT1 PPP2CB GDI1 SLC22A17 MPPED1 SLC24A3 DYNLL1 TUBB2A NEGR1 HS6ST3 PRKCG TMEM35 BEX4 RPL37A ENSA CFL1 PGAM1 NELL2 CAMKK2 UBE2E3 SYNGR1 APBB1 RPL35 RHBDD2 HMGCR UQCR11 NDFIP2 NUAK1 CMAS ATP5B TGOLN2 MAPRE2 NBL1 LYSMD2 SYNPR HIGD1A ARL2BP MDH1 RAB1A PCBP1 LMO3 UBA1 PLCB1 NGFRAP1 SLIT1 GAPDH PSAP MAP1LC3B CRIM1 UBE2V2 NCAM2 ATP6V1B2 TSC22D1 CLTA CDK5R1 MTPN ATP5I ACTG1 RAP2C TUBB STXBP6 STMN1 TRIM37 PEA15 TDRD5 GFAP POU3F1 GNB1 UBE2N TOMM34 DKK3 EIF4A2 LINC00116 BHLHE40 EIF1 TBR1 CDK14 GRIN2A STK39 GSK3A BSN NUTF2 CCDC124 MAFB NPTN REEP5 CADM3 GABARAPL1 NDUFB8 KCNAB2 BAG4 YWHAH CHMP5 BNIP3 PPM1A BCAP31 ARF1 ATP9A MED31 OPA1 ARHGDIG ATP1A3 RAB6B NDUFA4 EIF1B HDLBP ARFGAP2 TAC3 TUBA1B RAB3C PROX1 SLITRK1 TRIM47 SDCBP SLC17A7 CD99L2 LINC00086 APLP1 CDC42SE2 PFN2 ASAP1 HNRNPH2 GAD1 KLC1 NEFH TPPP SLC39A10 FAIM2 ENO2 PRKCB ASNA1 PLD3 VSTM2L NRCAM MAPRE3 RTN1 CERS6 COX4I1 ARHGAP35 AP1S1 SLC8A2 BRK1 SUMO3 KCNF1 RPL18A TAC1 EID1 FKBP1B RELN ANGPTL4 SUB1 RAB2A TBCB COL9A1 CX3CL1 SNX10 TMSB10 RNF11 NFIA PKM RPL31 CCDC184 SPON2 CTSD GNG3 WBSCR17 GAP43 PAM PDP1 CDH13 CLIP3 EPHB6 ATP2A2 SARAF ATP2B2 KCNAB1 DYNLL2 NRSN2 PPP3CB CALM3 GABARAPL2 BAD CNTN1 TMEM155 TMTC4 CALN1 TPRG1L CAPNS1 LINGO1 GRIN1 DNAJC6 NAP1L3 PRKACB LPPR4 LMO4 SERINC1 BEX1 KIF21A COPRS RAMP1 GNAQ SCG2 YWHAQ TMEM59L SKP1 NCEH1 VPS35 ATP1A1 SNCA MTCH1 SPRYD3 MAP7D2 NAPB FAM127A KRAS ADORA1 COX7B BSCL2 ALDOA NUDT4 NGRN\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "mixed excitatory neuron" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: RPL35 RPS27A SNAP25 RAB3B RPL13A ENO2 CABP1 RPL26 GDA RPL31 SERPINI1 NGFRAP1 NPTN NDUFB5 RP11-111M22.2 RPL41 INPP5F RTN4 SERPINE2 DPYSL2 PEBP1 RPL13 RPL23A GABRA1 RPL37A ATP1B1 TPD52 YWHAZ TMA7 KCNK1 AP2B1 DNAJC6 RPS2 TUBA4A STX1B DSTN DNM3 CDK5R2 RPL12 RAB11A MED10 TMEM14A PTPRN2 C19ORF70 RPS15 RPL36A RPL21 GUCY1B3 PRKCB ITFG1 PJA2 BAALC COX7A2 THY1 WASF1 TSPYL1 PSD3 PDCD5 AES OLFM1 OR6D1P SRP9 BASP1 PGM2L1 ATP4A APBB1 ARF3 DYNLL1 SLC22A17 BAI2 OXR1 DHCR24 CDK14 RPS28 OR2X1P RPL32 PPDPF TCEAL2 PTPRS OCIAD1 DMTN EDIL3 CRIM1 SARAF ALCAM TRIM37 FNDC4 STXBP1 PNMA1 CNTN1 PTK2B SOSTDC1 RTN3 LGI3 MZT2B NDRG4 GPR26 OAT YWHAG WBSCR17 SYT1 NRF1 TUBA1A SYNGR1 TESPA1 OPCML CLSTN1 PTGES3 TSPYL4 PTPRN NDUFB10 EIF4A2 STX1A CHN1 RPL10A GPM6A CEND1 YJEFN3 CRIP2 ATG9B YWHAB GUK1 RAB40B PTMA BSN UROD NCALD OAZ1 TCEA2 NDUFB11 ACTB PPP3CA SLC12A5 SLC25A22 UBA52 SV2B DNAJC4 KLC2 SPATA13 TSPAN7 SLC30A3 RP11-20I23.1 ALDOA RPL17-C18ORF32 SERPINF1 RPL17 ATP6V0C AC244489.1 PCDHGA5 PCDHGA6 PCDHGA10\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "mixed excitatory neuron" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: SNAP25 MT-CO3 CHN1 CALM1 MT-ND4 STMN2 PREPL MT-CYB ATP1B1 RGS4 MT-CO1 SYT1 RAB3B PPIA MT-CO2 CHL1 ACTG1 MAP1B KLC1 TMSB4X ELMO1 TUBA1B RTN1 RNF11 NDFIP1 VSNL1 TGOLN2 CLU LINGO1 PIK3R1 CREG2 JUND OAZ1 NRGN NECAB1 BASP1 ARF5 PSAP CAP2 TESPA1 SNCA MTRNR2L1 MT-ND3 OLFM1 DNAJB6 CALM2 HSP90AA1 CNTN1 FTH1 LMO3 TCEB1 CDK17 CAPZA2 MT-ND1 EIF4A2 CADM2 KCNAB2 PPP3R1 KIF5A TUBB2A SEPW1 ARL6IP1 TAGLN3 SYTL2 TBC1D15 ZNF385D VAMP2 ENO1 IPCEF1 MFSD6 RORB WSB2 UCHL1 ATOX1 MT-ATP6 PNMA2 RPL13 ZBTB18 TXN MT-ND2 C7ORF50 UQCR10 GDI1 PRDX3 TMEM59L ACLY KIAA1045 STXBP1 ATP5B PRELID1 CCK DYNC1I1 SEZ6L RNF208 TPT1 PLCB1 COL5A3 RHEB FAM43B EPB41L3 SH3GL2 STMN3 PPDPF ATP1A1 PGM2L1 SLC30A3 SSTR1 SLC12A5 GSTO1 CDK5R1 WBP2 SCOC DHCR24 APLP2 PCYT2 NUAK1 POLR2K CLTB UBE2V2 RELB TMEM70 SNX10 SERINC1 ENOPH1 P2RX6P BAG4 LDB2 SLC25A11 SDCBP MRPL20 ATP6V1B2 BSG GPM6A CAMKK2 TMEM65 SNCB ACTB RHBDD2 SLC22A17 PTMA TMEM164 DPP6 RPL36A ABHD8 UBE2QL1 TSPYL4 KCNA1 CXCL14 COL4A3 RAP1GDS1 CKB RIT2 CDC37 NPTX1 ALDOC THY1 GHITM ONECUT2 PHYHIP GPX4 PRKAR1A GNAQ PPP2R2C YWHAG MGST3 KIF21A MTRNR2L6 REPS2 MAST3 TMEM150C LDOC1L OPCML TUBA1A EDIL3 GAP43 ARF1 FTL MT3 ITM2C BNIP3 NAPB WASF1 RPL35 RPL38 BHLHE40 NHP2L1 COL6A1 PPP3CA RAB1A PEX5L SLC17A7 SCN1B D4S234E MPPED1 ITM2B APP CLIP2 NAA38 DYNLL1 SNRPN UBC RP11-195F19.5 SUMO2 PGAM1 SERPINI1 MT-ND4L LMBR1 PPP3CB ATP9A ID2 PITHD1 ATP5I DPYSL2 TMEM132D LAMA2 PRNP ATP5G1 DKK3 MAP4 CNRIP1 EIF4G2 RPL41 SEZ6L2 TPD52 FAT3 CALM3 RPH3A ATP2A2 REEP2 YWHAH LIMK1 GPX3 RPL18A YWHAB SRD5A1 ATP5H UBA52 CXXC4 FAM127A SPOCK1 OCIAD1 CABP1 CPLX1 PDCD5 AK5 PJA2 TSPAN7 SERINC3 RPL31 RABAC1 ARPP19 CBX6 RPL32 ATP6V0D1 CA11 ENO2 NUDT21 SYT11 RTN3 TM2D3 SYN2 MDH2 ATP6V1G2 ATP6V0C RPL17-C18ORF32 TUBB RPL17 RP11-20I23.1 RP11-111M22.2 RPL13A DNAJC21\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "mixed excitatory neuron" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: RPL21 SYT1 MT-CO1 SYNPO NECAB1 GPM6A CHN1 CALM2 FTH1 RTN3 PKM MAP1B TSPAN7 GDA RPL38 MT-CO2 HS6ST3 RPL41 RP11-111M22.2 HPCA RPS27A RASGRF2 MORF4L1 APLP2 CAMK4 EIF4A2 MTRNR2L1 RPL26 YWHAG NSF TSPYL1 SYT4 GPR171 ATP6V1F OAZ1 TPD52 ATP1B1 PNMA2 MFN2 THY1 KCNA1 LGALS1 PJA2 TENM3 GPX3 KRAS MAL2 FAM3C DPP6 BLVRB PDP1 CALM1 CKB TESPA1 SH3GL2 NELL2 APP NDUFC2 RPS4X ONECUT2 STMN2 ELMO1 HDDC2 SLC17A7 PGM2L1 CDK5 PRDX3 ACTB MAP7D1 TAGLN3 PSD3 RPL37A PTPRN DYNLT3 POMP EPB41L3 SNCB PTPRN2 PFN2 CAB39 MT-ND2 USP5 VSTM2A NDUFA4 MRPS28 NAT8L PCP4 TGOLN2 NEFL SIRPA GABRA1 UBB CDK5R1 OLFM1 PRKAR1A LMO3 GNAQ MTRNR2L12 RPL11 OCIAD1 KIF21A KLHDC3 MT-ND4L CLU MTRNR2L6 EIF4G2 NPTN ATP2B4 PSMA7 IPCEF1 PEBP1 SYT13 DYNLRB1 GAPDH TCEB1 TSPYL5 PPP3CA BASP1 ATP2A2 SNAP25 TCEAL5 RPL35 TUBA1B HSP90AB1 GDI1 SRP14 SLC9A6 ATP1A1 NDN FAM84A TBCB PRDX2 PTK2B FKBP4 CD99L2 ACTG1 GRINA MAP1A RPL32 SCN3B RGS4 SHARPIN ARF1 NAP1L2 TSC22D1 DKK3 RPS28 PIK3R1 NDFIP1 NDUFB4 MAP2K1 TMEM130 MT-ND3 PREPL SLITRK1 TUBB2A RPL13A NR1I3 BSCL2 ARFGAP2 PCDHGA5 PCDHGA6 PCDHGA10\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "mixed excitatory neuron" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: CHN1 NRGN RP11-111M22.2 RTN1 SYT1 YWHAH RPL37A SNAP25 ATP1B1 HOMER1 CALM2 ARPP19 ARL6IP5 SIRPA SLC39A10 BTBD10 TSPAN7 BIRC5 RPL41 ENC1 PRNP NDRG4 STMN2 GAP43 SYT13 TMSB4X PPP3CB TSPYL1 NR1I3 TBC1D15 DNAJC21 MPP1 PSD3 TRIM36 CRIP2 ATP5B EGR4 PPP3CA GABARAPL2 SLC12A5 HSP90AA1 FXYD7 UCHL1 ATP2B4 KCNC2 TOMM7 FKBP1B ELAVL4 PTPRN DMTN COL12A1 SCN1B DCTN1 SLC38A1 CAMK2G CHL1 INPP5F RPL3 COA3 DSTN SNCA RPL36A NAT8L LMO3 RPL11 DIRAS2 OAZ1 SV2B PRKACB SULT4A1 UQCRC1 C1ORF115 EGR1 TM2D3 LPPR4 OPCML COX4I1 SYT4 RORB POLR2L RPL31 BEX1 CMAS DYNLRB1 SNCG RPL21 CNTN6 COL5A2 BAG4 PLCB1 TMEM59L NDUFAF2 ANXA7 CKLF RPL10A MT-CO3 MRPS21 OR6D1P TRAPPC1 SARAF RGS4 MAP1B NDUFA13 NEFL CALM1 UBA52 SH3BGRL3 RPS28 MTRNR2L1 FAM3C PPP2R2B POMP EXTL2 ZFAND5 FTL RPL13 GTF3A SERPINI1 CPE TMA7 GDA GPR158 LRRIQ1 BSN COPG1 CFL1 PDE1A SLC38A11 RHOB VAMP2 SEPW1 PPIA MARCKS CA11 CLIP3 KCNC3 YWHAG GPM6A AP3S1 TUBB2A FBXO2 SLC30A3 RHEB PREPL IPCEF1 BSG CD99L2 CRKL ACTB ZNF385D RAB3B SYTL2 ARFGAP2 MTRNR2L6 IDS TUBB3 NGRN AC244489.1\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "mixed excitatory neuron" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MT-CO2 CHN1 MT-ND2 MT-CYB MAP1B MT-ATP6 SYT1 PPP3CA ATP1B1 RTN4 ENC1 HSP90AA1 SNAP25 MT-ND3 MT-ND1 PSAP TPT1 MT-CO3 CAMKK2 SPARCL1 GAPDH GAP43 DYNLRB1 MT-CO1 FAIM2 LMO4 RPL38 APLP2 TPD52 DNAJA1 PLCB1 RPL31 PEBP1 EID1 MT-ND4 SCN1A COL6A1 ARPP19 GDI1 CALM1 ZNF385D RAB3B SYTL2 TBC1D15 CLU GABRA1 TUBA1B THYN1 TOMM7 FAM134A ATP2B4 RAB7A RPL35 PRNP ATP5E SCN3B GOT2 ITFG1 RCAN2 SYNJ1 RPS19BP1 DSTN TAGLN3 LYNX1 PIP5K1B MED10 LAMP5 RP11-111M22.2 FKBP1A REEP5 NHP2L1 RPL26 FTH1 KIF21A MLF2 SERINC1 CDS1 LAMTOR5 CLSTN1 AKAP12 ATP6V1E1 LDB2 SYNPR PRKAR1B FAM174A COX5B VAMP2 CERS6 TMEM130 COMMD6 ATP6V1B2 APLP1 RTN1 NDUFS5 RPL37A VSNL1 CRIP2 RGS4 STX1A RPS5 RPL6 MT3 VDAC3 IGFBP5 S100A16 LMO3 CKB MRAS RPL11 MAPK1 DDN GLRA3 RPS28 PHYHIP CALM3 NARS TMSB4X ABHD14A CD99L2 DPY30 CALM2 ID2 LPPR4 SLC25A4 RPS12 TMEM11 NREP PCDH8 MT-ND5 UQCRH SMS ATP2B2 CREG2 TUBA1A MPP1 CTNNA2 PPP2R2C GDA EIF4A1P8 SULT4A1 TSPYL1 EIF4A2 ATP5F1 CYFIP2 GSTT1 MDH2 SUMO1 ATP6AP1 CDK5R1 NEFL PEF1 CHMP5 MT2A SCAMP5 PGM2L1 ITM2C NUAK1 RAB2A COX7C ATP5I RBX1 EFR3A KIF5A TERF2IP RASGRF1 NDUFB4 HSP90AB1 HSPA4 CABP1 NDUFAF2 YWHAH TSPAN7 NEUROD2 UCHL1 HAPLN4 PREPL CAMK2G NDRG4 SEPW1 TSC22D1 NAT8L NRCAM YWHAZ FABP7 PAK1 RPL13A RPL21 NGRN NDUFA13 ANKRD18A GABARAP BIRC5 RPL18A RPS3A KLC1 DNAJC21\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "mixed excitatory neuron" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: RPL38 RPS15 SYT1 RPL31 TCEB1 SNAP25 RAB3B SYTL2 MT-CO2 STXBP1 ATP1B1 RPL37A RP11-111M22.2 OXR1 RTN3 RPL26 VDAC1 RPS4X CDK5R1 SNAP91 PRNP MAP2K2 HSP90AA1 STMN4 MAL2 YWHAH RPL41 STMN3 INA GRIN1 ADAM23 AP2M1 RPL11 RPL35 UBB BEX1 CALM1 COX7C CHN1 OLFM1 RAPGEF5 SYN2 CEND1 ATP6V1B2 MT-CO3 MORF4L1 MYL6 MT-CO1 RAB6A TSC22D1 UQCRH ESCO2 TBC1D15 TUBB2A MAP4 APP SH3BGRL2 DNAJA1 WASF1 MT-ND1 PGAM1 COL5A3 MTCH1 TCEAL2 CHGB MPPED1 AES SLC12A5 ELMO1 RPL39 KCNAB2 SCN1A PNMAL2 NPTX1 HINT1 FBXL16 C11ORF84 FKBP8 ATP5G3 LRRIQ1 B3GALT2 ADORA1 REEP5 GFRA2 HMGCR MTG1 PGRMC1 CADM2 NDUFS5 SCD5 SERINC3 PJA2 RASGRF2 SYN1 FKBP1A YWHAZ ARPP19 EIF4A2 SNN PSAP NDN SUMO2 COX7A2 CNTN1 RPS27A TXN WSB2 PRKACB RPL12 COX6A1 APLP2 NRGN KLHDC3 POLR2I RLIM DIRAS2 GPM6A C6ORF141 PPP3CA NDFIP1 DKK3 POLR3H SNX10 UQCRQ CCT5 FIS1 ELOVL7 OAZ1 PKM YWHAG HK1 HS6ST3 SERINC1 C14ORF2 PLCB1 POLD1 PSD3 RBX1 NDUFB7 PDE1A ATP5E LMO4 NUDT21 SLC17A7 RPL15 PRKCG FAIM2 RPL8 UQCR10 PPA1 MAP1B COX5B RASGRF1 PDP1 CDKN2D TMEM130 CLDND2 NEFL GSKIP CAPZA2 ITPR2 INPP5F RPS26 MT1X CALM3 PPP3CB TMSB10 COX6B1 NFIA ATP2A2 TMEM59L FTH1 LPPR4 SULT4A1 HSPBP1 MAP1A NDUFA2 SEZ6L2 PPIA ACLY MARCKS CLSTN1 RGS4 PTMA ARF1 PEBP1 EIF1AX TBR1 RHBDD2 NDUFV1 THSD7A MAPRE2 CLTA APLP1 ARF3 GNB1 CHL1 UBA52 MT-ND4 VDAC3 UCHL1 CDK5R2 GRINA APBB1 TSPAN7 NELL1 RSL24D1 NCAM2 MTRNR2L1 MAPK1 SYNJ1 OPN3 BCAP31 RTN1 ZNF365 ENC1 ATP6V1F BEX4 GDA ENOPH1 NTNG1 GABARAPL1 CYC1 ARL8B RNF11 NCDN ENPP2 NCEH1 GNAQ HSPA8 KCNC3 MT-ND2 DDN PAM RP11-219A15.1 CFH MTRNR2L6 ALDOA MYOM2 PAK1 BSCL2 RPL21 AC244489.1 PCDHA9 PCDHAC1 PCDHA10 PCDHA4\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "mixed excitatory neuron" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MT-CO2 MT-CO1 MT-CO3 CALM1 SNAP25 SYT1 MT-ATP6 CHN1 PLP1 SPARCL1 PRNP RAB2A CYFIP2 MBP MT-ND3 PPP2R1A GPM6A KLC1 MT-ND2 CADM2 ENC1 PRKCB TMEM144 SCD5 ETS2 MTRNR2L1 PREPL YWHAG RTN3 DYNLL1 FAIM2 MT-ND4 MTRNR2L12 BSG PLCB1 YWHAB SLC9A6 NPTX1 OAZ1 MT-ND1 RPS15 MAP1B WASF1 CALM2 TPT1 GDI1 UQCRB NCOA4 CDK5R1 CLSTN2 ACTG1 CACNB1 PPM1A DNAJA1 MAL DCLK1 MFSD6 KCNMB4 PAQR8 CPLX2 SYT11 HTR2A ERMN SEZ6L2 ELAVL4 TOMM20 LMO3 CCK NDUFA5 REEP5 SRP14 RP11-111M22.2 ACTB NELL2 NECAB1 TMCC3 ARL6IP5 SNCA RTN4 OPN3 EIF1 RPL31 PTK2B MZT1 SPTBN1 ARL6IP1 LDHB UQCR11 MORF4L2 CAPZA2 COX6C MTND1P23 SYN2 CLIP2 CYCS RPL8 CTBP1 CDK17 FKBP8 MRFAP1 TSPAN7 NCDN MTATP6P1 GABRA1 BASP1 DKK3 SPOCK1 PEX5L COX4I1 PNMA1 FAM96B CNRIP1 AK5 GLRA3 ARHGDIA QKI NRGN THY1 C12ORF57 GOT1 LPPR4 HSP90AB1 YWHAH VSNL1 CRIM1 CLSTN1 CLTC SNN SSBP3 FTH1 TUBA1B WDR47 OXR1 HSP90AA1 TCEB2 FABP5 FTL HIST1H2AC CNP CREG2 C11ORF31 MT-CYB ZBTB20 GHITM NEFM KIF3C ITM2B FAM127A ATP5B RHEB RAP2A TSC22D1 GLUL SYNGR3 NAPB CRYAB DNAJB6 DLD CSDE1 FGF12 DACH1 UBQLN2 CKB SCN1A PCDHGA5 HN1 SARAF MORF4L1 FAM219A PPP3CA SOSTDC1 TMSB10 MYRF GDA SLC39A10 DPYSL2 SERF2 PACSIN1 EDIL3 SIRPA PPA1 YWHAQ PCSK1 SMIM13 NAPA APP SEMA3C ATP5O PCDH17 EFR3A TCEAL2 SERPINI1 UBA1 PGRMC1 VAMP2 RAPGEF5 DGUOK KIAA1045 RPL15 COX6B1 TSC22D4 CREB5 CFH SYNJ1 TAGLN3 SYTL2 IDS RAB3B GTF2H2C_2 HNRNPA1P40 NR1I3 PLEKHD1 TBC1D15 DNAJC21\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "mixed glial cell" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: PLP1 MT-ND1 MT-ND4 TBC1D15 EDIL3 CLSTN1 MT-ND2 SPP1 ZBTB20 GABPB1 ZFAND5 APLP1 MBP SCD TMEM144 MT-ND3 APBB1 CNP CLDND1 MTRNR2L12 SNAP25 RPL7 ACTB FTL MT-CYB MTRNR2L1 HHATL NECAB1 MT-CO3 SCD5 ARFGAP2 TF CAMK2G GRM3 FA2H HHIP TTYH2 KLC2 SNCB CYCS HDAC1 RTN4 ATP1B2 MRPL20 MAP1A MAF RAB2A COL6A1 FOXO1 COL11A1 PGK1 DCLK1 RPL13 RRAGA PRUNE2 KCNJ10 CLU SYPL1 SOX6 MARCKSL1 GUK1 CAPZB KIF1A APP FBXO8 MT-CO2 PDGFRA GPD1 UBQLN2 PSD3 OPALIN CRYAB SCOC SPOCK1 PRKCB MTRNR2L8 CALM2 SLC24A3 LYSMD2 DNAJB6 FOLH1 MAPKAPK2 LINC00086 HIF3A IDS CTC-575D19.1 APOD NCKAP5 FAM107B SFRP1 CREB5 RPS28 TMEM63A HEY1 ATP6V0B ATP13A4 QDPR GPR37 PSMB7 PRKACB THY1 SLC9A6 JUND AP1S1 ANKRD18A ATP9A NEGR1 ANLN MT-CO1 SEPT4 VAMP2 GRINA TMTC4 PPP1R14A ITM2C ATP1A2 GADD45B MTX3 ATP2B4 TSC22D4 MTCH1 HSPA2 FTH1 NEFH NDRG2 PRNP CYB5R3 MEGF10 TUBA1A TXNIP GLUL SOX2 OLIG2 HES1 HSP90AA1 ZNF385D SYTL2 RAB3B B2M MTRNR2L6 RPS3A RPL17-C18ORF32 RPL17\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "mixed glial cell" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: HSP90AA1 ZBTB20 MBP MT3 GPX4 MT-ND4 ATP1B1 CRYAB NCKAP5 MOBP HSP90AB1 MT-ATP6 QKI SYT1 PLP1 UQCR11 ABCA8 SPOCK1 ARFGAP2 PSD3 DDR2 CBX6 SCD5 RNASE1 GRAMD3 SMS RPL31 RARRES2 BEX4 MAP1B RNF182 COL5A3 CLDN11 ATP5G1 COX7C TOMM20 AP2B1 PPAP2B ATP5E SEZ6L2 RPL37A FIGN POLR2L PTPRS SNRPN FXYD6 CARNS1 TRIM59 CADM2 TMEM235 NKX6-2 PPP3CA CNP MT-ND2 FILIP1 NPTX1 RGCC OLIG2 TMOD2 GLUL EIF4A2 POLR2J TOMM7 AURKAIP1 PEBP1 PGAM1 DCTN3 RPS6 CLMN CTNNB1 ARF1 RAMP1 PPP2R2B RARRES3 GAPDH LRP2 SIRPA GPR37 RPP40 GPRC5B DNER PXDC1 FAM96B DMTN ACTG1 NDRG2 TLE4 CAMK2G MYOM1 BNIP3 CTSD FTL MGST3 NDFIP1 NDUFV1 PHYHIPL NDUFA13 KIT GDE1 C10ORF54 TUBA1A PBXIP1 ERBB3 FTH1 FAM149B1 PRNP PTPRZ1 APLP1 ATP5I RPL10A JOSD2 SPRYD3 PTMA SEPT4 RELL2 TF YBEY CALM2 CALM3 SLC1A3 NME1 EHD3 TM2D3 SCD RP11-597D13.7 OLIG1 RAB3B SYTL2 ESCO2 ZNF385D ATP6V0C B2M RPL41 ALDOA SERPINA3 RPS12 RP11-20I23.1 RPS10 RPL13A DNAJC21 TBC1D15\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "mixed glial cell" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: PLP1 RPL23A MT-ND2 CRYAB PTGDS MBP HSP90AA1 ARL6IP1 TUBA1A RPL15 SPARCL1 ATP1B2 FTL MT-CO3 MT2A TLE4 RPS28 RPL6 CLDN11 RAPGEF5 GPRC5B ZNF385D RAB3B ESCO2 SYTL2 PRDX1 RPL31 MYRF DSTN PCBP1 CSF1R RPS4X VCAN NDUFB7 SPP1 PTPRS SRP14 ARL8B FABP6 LAMA2 PEA15 DPP6 H2AFZ GSTP1 ABHD14A CALM1 CLMN DYNLL1 RPL13 GFAP ITGA6 NDUFB2 VWA3B PSMA7 SLC2A1 ERBB3 APOD FABP7 AP3S1 ARL6IP5 COX6B1 RAMP1 CAB39 NOTCH1 TMSB4X QKI TUBA4A HTRA1 RPS15 NDRG2 ATP5E COX6A1 NKX6-2 C4ORF3 COX8A ENPP2 ABCA8 CCK ZBTB20 ASAP1 RAB40B COX4I1 FAM107B RPS6 LGI3 RPL7 RPL37A RPL32 MARCKSL1 ITM2C NHP2L1 MTUS1 GORASP2 CALM2 RPL26 VAMP2 PTGES3 CP DNM3 KLHL5 EPS15 ATP6V1G1 RPS3AP12 CCDC152 TUBA1B ADARB2 SELM ATP1B1 MT-ND1 TMEM235 SARAF OPALIN SLC1A3 FABP5 RAB6A MTRNR2L12 FIGN LGALS1 RAB3IP SOX6 MT-CO1 ATP5J2 MT-CO2 TUBB4A RTN4 GRAMD3 TMA7 CD53 ATP5A1 GJA1 ACSS1 GPR17 TSC22D4 ZFP36L2 SEC61G ATP5J CNP RPL11 GABRE WIF1 SEZ6L2 ARF1 MT-ATP6 F3 PGRMC1 TOX3 KCNJ10 MAP1A RPL13A DNAJC21 TBC1D15 RPL17-C18ORF32 ANKRD18A NSF C18ORF32 RPL41 GABARAP RPS10 AC244489.1 HNRNPA1P40 NR1I3 PLEKHD1\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "mixed glial cell" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: PLP1 PTGDS MBP TF SLC1A3 RPS6 FTL PAQR8 BIRC5 HIST1H2AC ABCA8 QKI CDC42SE2 RORB ZBTB20 PSD3 OPALIN MYRF PLEKHG3 CADM2 AQP4 TUBA1A METTL7A MTRNR2L12 MTRNR2L1 PTMA HNRNPA1P40 TSPO ZFP36L1 PEBP1 CREB5 SRP9 GNAQ MDH2 AXL PRR18 RHOB PEX5L C18ORF32 GMFB RPL23A WLS MT2A HMGCR SCD SLC1A2 TMEM88B MYEOV2 GJA1 SLC14A1 DOCK10 CLU QDPR CHI3L1 TSC22D4 APP NKX2-2 MOBP PPTC7 PDE1C WFS1 PHPT1 TPD52 GJB6 SERF2 TMTC4 TPPP PLCB1 APOL6 TTYH2 KIAA1211 CYBRD1 SPTBN1 PTPRZ1 GFAP RREB1 GPR98 SCD5 PJA2 ITGB5 GPRC5B COX17 STOX1 HSD17B3 DKK3 CTDSP1 CTSD STXBP6 UQCRB BCAS1 CRIM1 VEGFA CLDND1 GDI1 MTRNR2L8 ASAP2 ST18 MAP1B AHNAK ETNPPL RP11-597D13.7 MT-ND1 CD63 SLC25A48 ENPP2 EPS15 PRNP MT-ATP6 CPE DYNLL2 TLE4 CNP PRUNE2 HHIP EDNRB STON2 FTH1 ACTB MTND1P23 COL5A3 CLSTN1 ERBB3 PRKAR1A PAX6 PPP3CA GRAMD3 HIF3A NPTX2 PIEZO2 GPR37L1 PFKP HTRA1 BEX1 ARL4C NDUFB5 RPS10 RPL21 MTUS1 TRIP6 ARL6IP1 YAP1 ASAP1 SNRPN RGCC CKLF CLDN10 NTNG2 CAPZB CAPZA2 RPL13A\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "mixed glial cell" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MT-CO3 MT-CO2 MT-ND2 MT-CO1 MBP MTRNR2L12 MT-ND4 MT-CYB MTRNR2L1 MT-ND3 RPL21 SCG2 MARCKSL1 PREX2 PLP1 MT-ATP6 RPL15 SLC6A1 MORF4L1 MOBP SLC38A1 RNASE1 MTRNR2L6 PRPS1 LGI3 FKBP4 WDR4 SLC6A17 DYNLRB1 MT-ND5 JUND SPOCK3 SYN1 AP2B1 BAI2 RP11-111M22.2 CD99L2 ATP2B2 CTSD RPL23A SEPP1 SNAP25 ITM2B SPOCK1 ARL4C RGS12 MGST3 AKAP12 CFH DNER YAF2 PSAP LINC00087 SOX9 MT-ND4L SERF2 CADM3 CALM2 WDR47 GRM8 RTN4 NAPB COX5A PTCHD4 PRKCB DYNLL2 ERMN TSPAN7 OCIAD1 TMSB4X CREB5 TRPC3 RAB6A TMEM151A NPTN DMKN MT-ND1 CALM3 CHN1 SNAPC5 PROX1 PPA1 PPP2CB ARHGAP35 TOX3 ZNF536 EGFR PSD3 TMEM144 PPP1R9B RPL37A RPL32 ZBBX LAP3 ERBB3 MAP1LC3A NRF1 PCDH19 INSIG1 CNTN1 TUSC2 SSBP3 TOLLIP RPL11 GPR37 TCEAL5 C14ORF132 COL9A2 ARHGDIG ATP1A3 CPLX3 GAD2 TRABD2A ATP1B1 ADSS RAB3B PLEKHD1 RPL41 TF TUBB\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "mixed glial cell" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: RAB3B GFAP PLP1 MT-ND4 MBP CLU ABCA8 ZBTB20 SLC24A2 TF RPL18A AQP4 ENPP2 EDIL3 SPP1 NRCAM RP11-597D13.7 OLIG2 TUBA1A OPA1 SPOCK1 AP1S2 HES1 MT-CO2 CD63 DNAJC6 WLS CLDN11 APBB1 GMFB ERBB3 COL4A5 PSMC5 PDE1C FAT3 RPL10A ERMN CRYAB HIF3A C1S NGFR RPL13A ACTR1A UQCR11 FTH1 VCAN MYRF CYP2J2 PPP3CA ATP9A ZFP36 PHKG1 SLC6A12 USP27X PLIN3 NDUFB5 SLITRK1 PCDHA4 EMX2 NDUFB1 RTN4 COX7C ATP1B1 TLE4 ATP1A2 RPL35 ATP1A3 MT1E DLD APLP2 CDH19 HHIP RELN EMP1 ENO2 NINJ2 BLOC1S1 GAPDH PPP2R1A SOX2 PAQR8 ANGPTL4 PTPRZ1 S100B ATP2B4 FGFR3 C20ORF24 SUMO2 MT1G PSD3 UBE2N PIP4K2A RPL15 SNAP25 TMEM144 ATOX1 IFI44L MTRNR2L1 RTN3 MT-ATP6 PSMB7 PSMD12 HILPDA SPARCL1 PLEKHG3 PCBP1 CLTC NECAB1 PSAP TMEM147 FAM189A2 SERINC1 PRNP GPRC5B DLC1 GPX3 NARS GLUL CALM2 SPATA13 NDRG2 ST18 RPL36A MEGF10 UTRN CADM2 SOX10 TOMM70A APOD ZFP36L1 CLMN PRKACB QKI OPALIN FGF2 IL33 IFI6 AURKAIP1 RAPGEF5 TMOD2 PHYHIPL CDK17 ZFHX4 DSTN UBA1 MTUS1 COL5A3 RELL1 SRP14 MORF4L1 PPP1R14A C1D MIR6723 MT-CO1 IDS RP11-219A15.1 PCDHGA5 PCDHGA10 PCDHGA6 TBC1D15 SYTL2\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "mixed glial cell" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: RAB3B MT-ATP6 MT-ND1 MT-CO1 PLP1 FOS ARL4C DNER ZCCHC24 MT-CO3 YWHAB MT-ND3 QKI EVI2A SYT1 TGOLN2 MT-ND4 SERINC3 RPL6 ZNF385D HHATL RPL3 ROBO2 RPS27A SEPP1 TMEM258 TAGLN3 RP11-597D13.7 GAPDH TEX2 TPT1 SERPINI1 SEPW1 TMEM35 NCALD GNG2 RPL12 GABARAPL1 ATP6V1G1 SPOCK3 MAP4 INHBB TUBA1B SLC24A2 SPOCK2 TMEM88B SCN3B OLIG1 CLDN11 MAP7D2 ATP5G2 CLU PRDM1 CNP AZIN1 PNMA2 NDRG2 CNTN1 ARL2BP RPL32 YWHAG APLP2 CDK5R1 PIK3R1 MT-CO2 SOX6 OXR1 NRSN2 CLTC PTGDS PRKAR1B KCNJ10 CTC-563A5.4 CDH7 CALM1 DNAJB6 CKB KLHL5 RPL11 NDUFA13 MTATP6P1 GAD2 HSPE1 TXNIP RTKN MTRNR2L1 UBL5 SLC31A2 PFN1 NMU TUBA4A SARAF FIGN UQCRB COX7A2L RPS15 FBXO2 MT-CYB PRKCB MTX3 PRKAR1A DPP6 MAFB PDE1A KIF21A HEY1 SNAP25 PRKACB SPP1 ACTR6 VSTM2L MTRNR2L12 TSPYL1 TIMP2 CLSTN1 EFHD2 ACSS1 SLC9A9 CAP2 ZNF343 DKK3 TMOD2 RAD23B RPL26 SOX2 NPTXR STMN2 MTRNR2L6 CDK14 TMEM59L TOX2 DIRAS2 PIP4K2A SLC39A10 SPARCL1 LMO3 LANCL1 ITM2B ATP1A1 FAM84A RHOA NCEH1 ARL6IP1 COX6A1 GRIP2 APLP1 RPL37A VPS35 OPRM1 IDS NSF OR6D1P RPL36A TBC1D15 ESCO2\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "mixed glial cell" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: PLP1 MT-CYB RTN4 FTL RPS10 TF GPRC5B RPL37A RPL26 SAP18 ATP1B1 SYT1 SLC1A3 TUBA1A MAP1B MBP MT-ND3 TMSB4X MT1E MT-ND2 SYTL2 RAB3B DNAJC21 TBC1D15 KCNK1 NGFRAP1 VWA1 RPL36A SAMM50 RHOJ SOX10 KCNMB4 TUBB4A SNCG EDIL3 ATP5J ATP2A2 NDFIP2 ATP6V0B PLIN3 PVRL1 PTGDS ST18 PAQR8 MDH1 GFAP ACOX2 NELL2 GLDN GPNMB SEMA5A FAM96B EIF1 MT-ND1 MTCH1 MT-ND4 MAGED2 BCAT1 ATP5E CNP RASSF8 DYNLRB1 MT-ATP6 FAM107B CREB5 DOCK10 RAPGEF5 RAB7A SOX6 STAB1 RPS27A SRP14 MAP2K2 ATP6V0E2 DPP6 RGS12 CALM1 TSC22D4 LDHB NDUFS6 ABCA8 TBCB ACTG1 MT1G MT1F PAK1 TSPAN7 ENPP2 RPS2 CORO2B CPE ZNF365 RPL35 ATP11C CALM2 SEPW1 QKI CLTC PIP4K2A ATP1A2 SEPT4 RASGEF1B CLSTN2 SOX2 HMGCS1 HSPE1 PLEKHD1 S100A13 LMO3 RPL41 SUMO3 CHCHD2 CLDN11 TLE4 PTPRS SPP1 MT-CO3 ETNPPL NDUFC1 RBX1 PMEPA1 F3 TMEM147 GPR56 SERF2 PGAM1 UROS MTPN PSMA7 SPARCL1 TMEM88B EIF4G2 GABARAPL2 NECAB1 EPB41L3 ERBB3 PRNP GPR98 CLU ARHGAP24 UQCRQ UBC C14ORF132 CRYAB TPT1 S100A1 EGR1 B3GALT2 MT-CO2 FIS1 RPL7 IFI27 NDUFA13 PGK1 RPL18A GTF2H2C_2 RPS28 ZNF385D\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "mixed glial cell" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: PLP1 FTH1 SLC1A2 SLC1A3 ZBTB20 GLUL SNAP25 ACTB HIF3A GAPDH NFIA EMX2 COX7A1 QKI HHATL GPR98 MTUS1 TF CALM2 MRPL47 ATP1A2 PFN2 ATP1B2 RP11-219A15.1 ATP6V1A PDP1 BSG TXNIP MT-ND3 PLEKHG3 SPP1 SEPP1 BIRC5 EPDR1 METTL7A NPAS3 GNAQ TMEM144 NDUFA1 TTYH2 PCMT1 NDFIP2 SYNGR1 MBP PARP9 MRPL33 MT-ND4 CA2 CPE OLIG1 MDH2 EDIL3 PSAP ITGB4 NAT8L PTPRZ1 NPTX2 PRKAR1B MED10 RAP2C ZBTB18 EDF1 MT3 MORF4L1 CD63 TLE4 RPS6 MT1G TNNT1 MT2A MT-ND2 ITM2B GSTT1 ID4 MYBPC1 CLDN11 CHL1 HTRA1 ATP6AP1 STON2 CLDND1 BMPR1B PTMA DPP6 DLC1 STXBP6 ADORA1 CDK17 FKBP4 COL21A1 TMA7 CD9 AIF1L ITGA6 SIRPA EDNRB IGFBP7 RASSF8 CALM1 RPS12 MT-CO1 SQLE CLU MTND1P23 SYTL2 RAB3B RPS3A MT-ND1 TBC1D15\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "mixed glial cell" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: GFAP PTMA GPR98 MT-CO2 RANBP3L SPARCL1 MT-CO1 ITM2B NFIA TF MT-CO3 FRMD4B PTGDS GJA1 SLC1A3 AQP4 PPAP2B CLU MT-ND2 AHNAK MT-CYB HSP90AA1 ATP1B2 QKI SLC1A2 STON2 MT-ND3 MEGF10 ATP2B2 VIM RPL11 GRAMD3 COL5A3 ITPR2 MT-ND1 MT3 TUBA1A PTPRZ1 HGF RPS15 PMP2 JUNB F3 RPL37A CPE GLUL ZNF385D SYTL2 RAB3B MBP PLEKHF1 SMIM13 ALDOC AGT RPL41 VAPB NDUFS5 HAPLN4 POMP COX7A2 ZFAND5 COX6B1 TPT1 ERBB3 PGAM1 RORB PSAP SRP14 MT2A CTBP1 PREX2 ZFP36L1 PEX5L ADARB2 SALL1 OR6D1P DKK3 SLCO1C1 CHI3L1 PPP2CB TMEM144 FTL NKX6-2 CKB NPAS3 REPS2 ENO2 COX4I1 UHMK1 ALDH1L1 BIRC5 GPR37L1 TRIM47 MT-ND4 ZBTB18 CA2 GLDN LINC01085 COX7B FAIM2 RPL38 CAMK4 TXN SYT11 WDR47 RPS28 ATP5B TMEM258 RPL36A COX5B RAMP1 MTUS1 EIF1 ACSS1 FTH1 CADM2 DLD EID1 SPTBN1 SNAP25 ENO1 ACTB RPL31 RPL32 MAGED1 PIP4K2A TEX2 ARL6IP5 NDUFA13 ZFP36 TSC22D4 MT-ND5 MAST3 S100A13 ISCU ST18 FOXO1 SLC39A12 EDIL3 NHP2 SOX9 TGOLN2 SH3RF1 TUBB4A SERINC3 ZCCHC24 LYNX1 SNCAIP HHATL TCEAL2 CNTN1 SIRPA DHCR24 MT-ATP6 PPP2R2B WLS RPL12 STOM BMPR1B RPS27A CBX6 NACC2 BCL6 PLP1 TXNIP METTL23 ATP5I ZBTB20 SEC61G PRDX2 LAP3 ACACB AEBP1 MTRNR2L8 COX7C C14ORF2 RPL13 MTRNR2L12 UBA52 MT1M CLDND1 MLC1 PPP2R4 MAOB MRFAP1 NUAK1 NUDT4 RNASEK-C17ORF49 RP11-219A15.1 SERPINA3 RPS3A ATP6V1G2 RPL13A ARFGAP2\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "mixed glial cell" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: TSHZ2 PLP1 MT-CYB MT-ND4 SYT1 SLC38A1 ST18 MT-CO2 DNAJC21 PTGDS ZBTB20 MTUS1 TLE4 MT-ND3 APOLD1 TF SPP1 AK5 HSP90AA1 TXNIP FSCN1 HHATL BSG SYN1 NPTX1 MT-ND4L PPP2R2B SSTR2 SSBP3 RPS3A CLTC OCIAD1 RP11-111M22.2 GRIK1 CACNA2D2 RNA5-8SP6 PPAP2B CAPZB CNRIP1 GPRC5B TTYH2 OLIG1 CSRP1 C10ORF90 BCL11B TMEM144 FTH1 APBB1 PTX3 COX4I1 NDUFB1 CCDC124 RARRES3 GADD45GIP1 ERBB3 IDI1 HSPA2 CALM1 ISCA1 RPS15 YAF2 RPH3A MT-CO3 MBP MTRNR2L12 RCAN2 NDRG4 SLC17A7 STK39 PAFAH1B2 DOCK10 CTSD MOBP PIP4K2A EIF1 ABHD8 WIPF1 MYEOV2 CLMN SLC22A17 TPT1 MAP1B RHOA MZT2B CKLF MAST3 FRMD4B MTRNR2L1 OAZ1 TERF2IP TCEB2 RTN4 C7ORF50 PIK3R1 ATP1B1 GNAQ ASAP2 CCT5 NECAB1 PJA2 CTC-575D19.1 SKAP2 SCD5 DKK3 YWHAQ MTCH1 BASP1 CLDND1 KIF5A SEPW1 MTRNR2L8 CD63 BAALC METTL7A PPP1R7 HILPDA PEX5L RPS12 ANKRD18A RNASE1 TBCA ELAVL4 RPL13A MTRNR2L6 ARFGAP2 RAB3B SYTL2 ZNF385D\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "mixed glial cell" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: SLC1A2 SLC1A3 CLU PTGDS RAB3B SCD ZBTB20 MT2A F3 RPL11 EZR SNAP25 TUBB2B NDUFV1 PPP2R4 NDFIP1 GRIN2C ANGPTL4 ACAT2 PRKAR1A SPARCL1 EIF4A2 MT-CO1 SKP1 RPL3 NREP GLUL WBP2 SOCS3 GAPDH TF ZFAND5 MT-ND2 RPS28 YWHAG FIGN PBXIP1 CYB5R3 COL5A3 HILPDA PLSCR1 PTPRZ1 MT-ND3 QKI NDRG4 ATP2A2 GADD45B IFI35 ZFP36 TMEM147 SYT17 RPL21 RHOB RNASE1 SLCO1C1 NDUFS6 CLTC MAPRE3 AGT TIMP2 ID2 CALM3 GJA1 MYRF NAP1L5 HSP90AA1 PENK PSMB5 ATP1B2 GHITM WFS1 APLP2 TBR1 DNAJC5 PLIN3 PSMC5 GRM3 MTND2P28 SLC44A3 BNIP3 CYFIP2 PRDX2 FAM131B MRVI1 CLMN ALDH1L1 FAM127A MAP1LC3A CPE TSPAN7 SLC6A1 PAMR1 PRELID1 SMS LCNL1 MT-ND4 PRDM16 COPE OAT HSPE1 ABCA8 SNRNP25 NRGN CRISPLD2 FASN GABRQ LIG1 GBE1 STOX1 SEMA3B MT1X ADM YWHAH RAB31 ACTR1A FARSA SLC25A11 ZFHX4 SRGN ARF3 RPL31 EDIL3 ENO1 APOE NKX6-2 GRAMD3 NRCAM SARAF MORF4L1 CD63 MAP4 STMN3 PEBP1 ENPP2 COX5B CHP1 TMOD2 PPIA CLSTN1 FAIM2 CXCL14 NGFRAP1 RPL39 MAP2K1 VDAC3 CTNNB1 SSTR1 PXDC1 TALDO1 IQCK ANGPTL2 EFR3A ATP5A1 STON2 HMGCS1 TPI1 HSP90AB1 PSD3 DNAJB6 PRR18 CLDND1 GFAP YBX3 ARL6IP5 MT-CO2 MRPL20 CPNE2 TKT FBXW11 PDGFRB PLP1 EML3 DPYSL2 RP11-404G16.2 OLFM2 CNP MSMO1 SPTBN1 CALM1 PJA2 APOLD1 TLR4 MIF ATP6V1G2 AC244489.1 PCDHGA5 PCDHGA6 PCDHGA10\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "mixed glial cell" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: PLP1 MBP ZNF385D MT-ND4 MT-ND2 MT-ND3 ZBTB20 MT-ATP6 MT-CO3 MT-CO1 MT-CO2 CLDND1 MOBP TBC1D15 APLP1 TMEM144 MTRNR2L12 QKI PDE1C EDIL3 CRYAB SCD FTH1 MT-ND1 TF MTRNR2L1 PRNP HSP90AA1 SPP1 CREB5 QDPR ERBB3 TMEM63A ATP1B1 SEPW1 CCK CALM2 NDRG2 CNP MT-CYB ALCAM PTGDS CSRP1 TXNIP HSP90AB1 FKBP8 DPYSL2 VAMP2 RTN4 PTMA STMN1 MAL ATP5I SNAP25 TMSB4X FTL DNAJB6 RPS27A GAPDH ITM2B RAPGEF5 RPL3 MAP1B NAPB FRMD4B MT-ND5 ITFG1 NDUFA4 CTSD S100B SELT ETFB SLC1A2 RPL41 SEMA3B IFI6 CALM1 JUND TLE4 FAM107B CFL2 PKM FSCN1 APLP2 UBA52 TRHDE RP11-597D13.7 RPS15 FGFR3 CD9 ENC1 SOX2 UBE2L6 SNRPN GPCPD1 RTKN NFE2L1 IQCK TPD52 TALDO1 CLU PDK4 RAB3IP PLCB1 RAB7A SCD5 FA2H ENO1 SYNGR1 PRDX1 MT3 GLUL TMEM151A EIF5A2 PPA1 APOD CAP2 C1ORF115 PLD3 NFIA RTN1 CTNNB1 MORF4L1 ELAVL4 KLC1 CTC-575D19.1 HHIP NDUFA13 EID1 OLFM1 RPL13 GOT1 SPOCK1 ST18 CADM2 MT2A PEA15 PPP3CA PRKACB MARCKSL1 C1ORF52 FOS ZBTB18 LANCL1 PADI2 DOCK10 PJA2 ARF5 ATP5J PPP1R14A RPL21 PDP1 ATP1A1 RTN3 SRP14 TPI1 GPRC5B SCN1A GPR98 PCDHA4 LGI3 DNM3 RPL35 ANLN CYP27A1 DYNLL2 NTNG1 SYT1 INPP5F NDFIP1 RPL7 PEBP1 OLIG2 MAP1A RHBDD2 TUBB4A OXR1 TTN B3GNT7 NPTN CLDN11 COMMD6 CERS6 PHYHIPL FIS1 NHP2L1 SERINC3 SEPP1 MTRNR2L8 PPP2R1A COL4A5 ENO2 SPOCK2 YWHAG ATP2B2 EPS15 PSMD2 TWF1P1 APP SLC1A3 TPT1 RPL11 ATP6V1B2 HSPA2 SNAP91 GPR37L1 NR1I3 IDS ESCO2 BIRC5 TUBD1 BAG4 SEZ6 TMTC4 PGM2L1 UHMK1 CKB DYNLL1 C19ORF70 CAPNS1 SLC31A2 THSD7A UBE2E3 FAM134A NKX6-2 EIF1 PSMD12 SOX9 GADD45GIP1 PREPL RNF181 NGFR WDR47 SGCZ EIF1AX DNAJA1 CBX6 ATP2A2 TRIM47 CLIC4 RPL31 COA3 PNMAL2 ASAP1 BEX4 COX7A2 PSD3 S1PR5 OCIAD1 SUB1 MTCH1 PROX1 UBA1 PPTC7 GJA1 RAP2A COL5A2 GPR37 TEX2 C1QB SPTBN1 RFK SCAMP5 RPL18A MEGF10 ATP5F1 PPP2CA GRAMD3 NAT8L HIGD1A PIN1 PON2 ARPC4 UQCRC2 GABARAP MMD KIAA1755 RPL8 CLMN RNF152 LINC01314 MTUS1 TACSTD2 NSF PCBP1 MFSD6 ATP5O C4ORF3 ATP6AP1 SHISA8 RPS3A GPX4 SYT11 BEX1 PDGFRA ASCL1 ANKRD18A CLTC RPL39 ATP13A4 UBL5 GLO1 CD59 HTRA1 ATP6AP2 PSMC3 PRKAR1A SLC24A2 HHATL GRM3 OR6D1P PHYHIP ACTR10 NOTCH1 TSPYL1 TOMM7 SYPL1 NRGN OAZ1 HINT1 RNASE1 NGEF VAMP1 LINC01296 RPL13A MT-ND4L TIMP2 GLIS3 YWHAQ COX7B PSAP ARL6IP1 SKP1 MYRIP ACTB CDH19 TCEAL5 ENPP2 DNAJC6 FAM127A GTF3A TSPYL5 AZIN1 MRAS RAB6A DGAT2 TBCA SPATA13 OAT TCEAL2 RGS12 RPL15 ARL4C PMEPA1 GMPR NUDT4 PSMD8 MAPRE2 KCNC2 CFH GUK1 TP53TG5 HEBP2 LGALS1 RPL37A BCL6 UQCRH RCAN2 DNER CDK5R2 MGST3 UBE2M LRP4 MAPRE3 RABAC1 SIRPA MAG PPP2R4 FIBIN BNIP3 RPL10A NPTX1 MRPL52 CA2 CCDC141 EHD3 PSMB5 TKT AZGP1 ZNF365 CST3 RPL38 FAM3C YWHAB VSNL1 HEPACAM NUDT21 CHMP5 PAQR8 SLC9A6 IFI16 C19ORF53 ZFHX4 LINC00086 SDC4 TRIM37 CTU2 CRYM S100A6 SLC38A5 PIK3R1 NRF1 SOX4 NEFL SGCD TLR4 SMIM13 CCDC85B SKAP2 SLC24A3 NCAM2 SERPINI1 PRKCE EFNB1 HEPN1 BTNL9 C14ORF2 KIF21A GRIN2A GNG12 FSTL5 SHD COPS8 KCNMB4 HAPLN2 PTPRN TCEAL3 TSPAN11 RPS12 LMBRD2 RAB2A PLEKHG3 NDUFB7 SOX11 PPP2R2B AGT TPPP GDI1 EIF4A2 ARPP19 NTHL1 DIO2 RP11-111M22.2 HSPA8 KCNJ10 NGRN GLDN UQCRB TTYH2 BASP1 NPAS3 RPS28 FAM69C SLC10A4 C1D EGFR LRP1B PFKP ELMO1 RAMP1 NARS CBLN1 TMEM258 GFAP DYNLRB1 FXYD6 GABARAPL1 RGS4 MYRF RPL14P3 LMO4 SHC4 STMN4 FAIM2 CHL1 EVI2A HSPE1 NAA38 AP2M1 PIEZO2 PSMA7 CTNND2 RPS5 NACC2 UBB SHARPIN BSN RAB40B PRKCB GSTP1 FAM84B DKK3 COX6C PFN1 PEX5L CD99L2 YWHAH ADARB2 CCDC25 THY1 NDUFB11 EXTL2 MAF COL5A3 ALDOC STXBP1 PRUNE2 CHN1 TMX4 ATP5A1 RPL26 C12ORF49 DSTN PNKP GPM6A COL9A1 DGKG VIPR2 PPP3R1 ALDH1L1 TMOD2 BSG MAP2K2 OPALIN KLHL13 CYB5R3 TRIM59 RNASEK-C17ORF49 HSD17B3 MTRNR2L6 EPHB6 ALDOA B2M SERF2 RPL36A SYTL2 RAB3B PGK1 ARFGAP2\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "mixed glial cell" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: PLP1 MT-ND4 CLU QKI FTL MBP SLC1A3 FTH1 MT-CO2 SYTL2 TMEM144 MTRNR2L12 GFAP MTRNR2L1 CLDND1 MT-CO1 SLC1A2 VEGFA MT-ND3 ITM2B NFIA SCD GLUL MT-CO3 DPYSL2 COX4I1 PTGDS TLE4 RPL21 ATP1B2 MT3 MT2A PSAP ATP1B1 RAB3B CRYAB TPI1 MT-CYB SPP1 UBA1 FAM189A2 HHATL PPAP2B PTMA ATP5I RTN4 ATP5G3 GPR56 GPRC5B JUND SOX9 YWHAZ ST18 MRPL33 TUBA1B HSP90AA1 PON2 MTRNR2L8 RGS16 GPR37L1 COX7C VAMP2 RPL38 TUBB4A CLSTN1 MT-ND1 SIRPA ATP6V0E2 SLC24A2 MT-ND4L AQP4 CALM2 CPE APLP1 ITM2C DPY30 TMEM63A TBC1D15 PLEKHD1 TF ESCO2 DNER GRM3 AEBP1 TXNIP OLIG1 PRUNE2 CDK17 BCL6 C1QBP TLR4 ASAP2 NDUFS6 CREB5 AGT ZNF350 TCEAL3 GPR37 BRINP3 ATP6V1B2 RP11-597D13.7 MYRF SPARCL1 GRAMD3 RGCC GPM6A PTPRZ1 UHMK1 ATP5G2 TMEM147 PTN FSCN1 SLC25A53 NAT8L ZFP36L1 FAM127A DNAJC5 SPATA13 RAB4A NTNG2 SQLE PADI2 ELMO1 GNAQ PEX5L RGS12 NEK6 MT-ND2 SSPN LMO4 RAB11A TNFRSF11B HGF RHEB TPT1 UQCRH C12ORF49 S100A1 SAP18 PCYT2 F3 UBE2E3 LCNL1 ATP5E ALCAM PPDPF TSC22D4 NCDN ACTG1 SOX2 PBXIP1 PPIF METTL7A PDE1C CMTM5 RPS27A TMA7 COX6A1 SHC4 S100B GOLIM4 CST3 HSPA8 SEPP1 PSD3 MAG NDUFC2 CHN1 TMEM132C ALDOC UBC ST6GALNAC3 SNX3 ENPP2 ATXN10 COL9A2 SDC4 KIAA1045 ATP5J FGF2 FABP5 TMEM123 CADM2 CNP PROCA1 MOBP TMEM59L CD59 FKBP8 ZFP36L2 PVRL1 HIF3A MEGF10 ETFB NEGR1 DPF3 RPL26 BCAS1 PHPT1 PLD3 TTYH2 HDDC2 PCSK5 ZFP36 PPP1CB ABCA8 APP GRINA VWA1 SNAP25 ACTB IGFBP7 RANBP1 UQCRQ MYO10 RNASE1 C7ORF50 PCDHA4 ANLN COA4 SUMO1 RPS3A MT-ATP6 CLDN11 ANGPTL4 EDNRB RP11-133L19.3 MTUS1 KCNK1 APOE HSP90AB1 CHRDL1 HTRA1 RAB6B INSIG1 ZFHX4 MORF4L1 APOC1 GOT2 ADSS KCNJ10 RHBDD2 CAMK2G CCT5 TMSB4X RHOB C10ORF10 COL6A1 PPA1 PAQR8 SLC25A4 MRAS NDUFS5 SYT17 QDPR DNAJB6 LYNX1 RTN3 CPNE2 TOMM7 MRPL55 MGST1 YAP1 UQCRB PRDX1 CFI STMND1 CKB RPS15 TM2D3 CAMK4 ARL6IP1 ERMN BRK1 CARNS1 PAPLN SFRP1 SERINC3 AES RPL36A ATP6V0C RP11-20I23.1 RPL17 RPL17-C18ORF32 HNRNPA1P40\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "mixed glial cell" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: PLP1 TF ZBTB20 SLC1A2 PTGDS CLU MBP MT-ND4 MT-ND2 SPP1 GFAP NFIA MT-ND3 PPAP2B SPARCL1 GPR56 RPS6 TRIM47 MT3 MT-CO2 AQP4 CD63 SLC1A3 QKI FGFR3 RPL41 MTRNR2L1 SERPINE2 MOBP MRVI1 SLC14A1 FTH1 MTRNR2L12 HNRNPA1P40 PTMA DNER WBP2 SEPT4 PLOD2 AGT CAPZA2 TUBA1A ARL8B VDAC2 TSC22D4 PTPRZ1 RPS15 SIRPA CPE MYO10 FSCN1 TMEM88B PRNP GABRG1 CHI3L1 HSP90AA1 OR6D1P CLTC ATP1B2 HIF3A COTL1 ADARB2 MT-CO3 NDUFB7 PRELID1 ZFHX4 C1S PSAP FTL ARFGAP2 TPT1 PRUNE2 BMPR1B FGF2 CYC1 NKX6-2 ARHGAP35 COX6C ETNPPL SALL1 PLEKHF1 PI4KA PDGFRB UQCR10 PIK3R1 SYNGR1 RPL38 RAB31 EIF1AX MAPRE2 ERBB4 CYBRD1 CLMN SEPP1 GLIS3 UQCRB QDPR CRYAB GPR98 SLC39A12 ALDOC MT2A ELMO1 C10ORF90 PON2 SOX6 NDRG2 RHOA MTRNR2L8 TERF2IP PTPRN VDAC3 CFL1 METTL7A HHATL IDS RPL12 CDKN2D CALM1 ENSA SMAP2 OLIG1 COPG1 COL6A1 ITGB4 NOP10 GPRC5B TMA7 RP11-111M22.2 ALDH1L1 CADM2 CST3 SNAP25 COX4I1 ID2 PIP4K2A CNTN1 MYL12B OAZ1 RTN4 ATP9A APLP1 SLC25A4 ITGA6 MAGEH1 TNFRSF11B CNP GLUL ERBB3 CREB5 RPL21 RPL13A NGRN MTRNR2L6 SYTL2 RAB3B GTF2H2C_2 KLC1 NR1I3 RPL18A CFH TBC1D15\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "mixed glial cell" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: SLC1A3 SLC1A2 GLUL GPR98 COL5A3 ATP1B2 NFIA QKI CLU ITM2B ATP5E FTL PPP2R2B GPM6A HEPACAM PRDM16 MT3 ERBB4 PLTP NDRG2 FTH1 BCAP31 HPSE2 MGST3 GNB1 MT-ND5 PIEZO2 HHIP EPHX2 DNAJB9 RPL21 TLN2 SEMA3B QDPR APP PTPRS ARPP19 KIF1A PPP1R14A PSAP PTPRZ1 SARAF IMPA2 ELAVL4 RPL13A MT-ND2 GOLIM4 ASPA GRAMD3 CLMN CCDC152 HMGCR CPE ATP5A1 MAP4 HINT1 MT-CO1 STMN4 MEGF10 TF APOE SLC14A1 RP11-631M6.3 VAMP2 SLC24A2 MDH2 ATP5C1 TBCB CADM2 S100B PMP2 SEPP1 MTUS1 TLR4 RAPGEF5 LPAR4 AGT GPX4 RPS4X UBC KIF21A MYRF MTPN ALCAM MOBP PTGDS ALDH5A1 RPL13 SYT11 GPCPD1 ACSS1 PAQR8 CSRP1 OLIG1 ERMN CST3 CXCL14 TUBA1B HTRA1 CHN1 ATP13A4 HIF3A METTL7A MT1E MYO10 MFGE8 SRP14 KIAA1755 C6ORF1 GDE1 SOX9 GRIN2C SLC39A12 PKM RHOJ CKB CTSD SLC30A3 TBC1D15 EPHB6 KLC1 SERPINE2 PLEKHD1 ZNF385D ESCO2 SYTL2 RAB3B AC244489.1 DNAJC21\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "mixed glial cell" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: SLC1A3 SLC1A2 NFIA CLU GPR98 OR6D1P MT-CO2 MBP MT-CO1 TBC1D15 DYNLL2 MT-CYB DNAJB6 LMO3 ATP1A2 ALDH1L1 ANGPTL4 STON2 TF SYTL2 RAB3B ZNF385D ERBB3 MT-ND4L CTSD SEMA3D UQCR10 PLEKHG3 NR1I3 MT-ND1 CLPTM1 GFAP CNTNAP3 TMEM230 RPS5 TKT PMP2 MT1E TMEM63A COL5A3 KCNA2 RPL12 EMX2 GLUL ITM2C FAM149B1 GRM3 RPL36A SPARCL1 SLC14A1 BCL6 AZGP1 SYT11 PTGDS CSRP1 CHN1 CKB SYPL1 MT-ND4 PREX2 NDUFAF3 SNAP25 MT2A FAM107B TCEAL7 ART4 UBC NDP PSMD12 MT1G CTNND2 CADM2 ZFP36 WLS SH3BGRL2 PIP4K2A SCD5 NAPB TIMP3 DPYSL2 NDRG2 OST4 SUMO1 MTUS1 ATP1B2 TTYH2 CLDN11 PAX6 TOLLIP SERPINE2 LRP1B ATP5I AGT ANXA4 THOC7 RPS15 HTRA1 GPM6A HGF PDE1C POLR2K KIF1A SEPP1 ADAM33 GJA1 STXBP1 GRINA HSD17B14 MT-ND2 PEA15 AIF1L TUBA1A TRIM59 ZNF365 ENO1 TBCB ESCO2 B2M SERF2 RPL17 RPL17-C18ORF32 IDS PCDHGA5 PCDHGA6 PCDHGA10\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "mixed glial cell" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: PLP1 SLC1A3 MBP TMEM144 APP SLC1A2 PDE1C SCD5 APLP1 ZBTB20 MT-ATP6 PTGDS TF SYTL2 RAB3B NFIA SPP1 DPYSL2 CLU PSAP MTRNR2L12 FAIM2 PTMA GJA1 EDIL3 GFAP ANGPTL4 MOBP ATP2B4 LIMK1 RPL8 TMSB4X TUBA1A DNM3 ENO1 RPS6 ACTG1 GNAQ CTSD UBA1 QDPR FOLH1 ZBTB18 SERINC1 ABCA8 CDH19 SPOCK3 CNP SEPW1 CLPTM1 RPL37A TMEM88B GPR98 TSC22D4 ENPP2 RAB40B GPRC5B SLC14A1 BCL6 CLDND1 KIF1A RP11-597D13.7 TERF2IP TBC1D15 CFH NR1I3 POLR2M SNAP91 ITM2C TCEB2 ATP1B1 CD9 AC139103.1 APBB1 IFITM3 MTATP6P1 WLS FKBP4 TPT1 MTRNR2L1 RTN3 PPAP2B METTL7A ITGB4 PREX2 THBS4 PDLIM5 INHBB GRAMD3 IDI1 PCDHGA5 AEBP1 C10ORF54 CD99 ATHL1 LAP3 MT3 NDRG2 PTPRZ1 HSPB1 GNG12 MT-CO2 MLF2 ZCCHC24 OLIG1 CBX6 QKI FGF2 INSIG1 SERINC3 SNAP25 MT-CO3 CHN1 HES1 RPS15 CNTROB UBC LGALS1 DDAH1 EFEMP1 HHIP ERBB4 HIF3A ALCAM TOMM7 SELM MTRNR2L8 RTN4 RPS28 FOS BSG RPL13 MTRNR2L6 FTH1 OCIAD1 NDUFB3 APOD RPL35 COX5B ST18 TTYH2 MYRF HEPH MT-ND3 ELMO1 TMEM164 RELN ATP1B2 RANBP3L STMN1 ASPA RPS27A PHPT1 PEBP1 ID2 HOPX HTRA1 OAZ1 RGCC ZNF365 NDUFB7 MRPL33 RHOA RGS12 NTNG2 ARHGAP29 CRIM1 KCNJ10 PPP1R14A RPL12 SCD PIP4K2A SLC31A2 GLUL TMTC4 EPS15 OPALIN PFN2 HSP90AA1 TMOD2 TLR4 CALM2 ZNF385D\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "mixed glial cell" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MT-CO3 MT-CO1 MT-CO2 MTRNR2L1 MTRNR2L12 MT-ND2 MTRNR2L8 MT-ATP6 MT-ND4 MBP MT-CYB MTRNR2L6 MTATP6P1 PLP1 MT-ND3 MPPED1 SYT1 PIK3R1 SNAP25 PRNP MT-ND1 GPM6A MT-ND5 TSPYL1 CALM1 SSBP3 TMSB4X EPS15 PTGDS SPP1 SLC12A5 MAGED1 SLC24A2 FXYD6 DLX1 UBE2QL1 SNRPN CNP TMEM151A WASF1 CALM3 IQSEC1 VSTM2L GRIK1 NAT8L PRKACB PTMA RTN4 CTSD ST18 MAP1B QKI ACTG1 SEPP1 ELAVL2 ATP1B1 HHATL RPL41 LAMTOR5 HNRNPA1P40 RAB3B TBC1D15 SARAF PRUNE2 NDRG2 RP11-111M22.2 ITM2C SST SERPINI1 HSP90AA1 CLPTM1 ATP1A1 SLC6A1 STMN4 APOD DNER ATXN10 FTH1 QDPR LANCL1 BCAT1 MFN2 SPOCK1 PPP2R1A HINT1 CDH7 COX7C PCSK1N GPX3 APLP1 HRH3 APBB1 FAIM2 SCD RPS27A LYSMD2 GHITM CALM2 NDUFB2 PPP1R14A MORF4L1 AP2B1 CSDE1 TMEM144 CADM2 EID1 MAL FAT3 RAB3IP PKM PPP2CA EFR3A PCDH19 ITM2B GAP43 OAZ1 NRGN NPTN UBE2N RGCC EDIL3 MAF PNMA2 PTPRS ARL6IP1 HSP90AB1 BEX2 ZFAND5 ATP9A NAP1L2 ARL4C MAG NAPA NR1I3 B2M IDS SKP1 ZNF385D TUBD1 MTND2P28 MYRF NDUFC2 PRKCG PCP4L1 ARF1 NELL1 ARHGDIA PLCD1 KCNAB2 NDFIP1 UROS HES4 MZT2B TUBB4A CLTC GSK3A CPLX1 NTNG2 DCTN1 RPL38 MEGF10 SUCLA2 NGEF JUND MYL6B NGFRAP1 ITGA6 DEXI CFL1 UBL4A KCNA2 COQ10B GUK1 ITFG1 PNMAL1 EIF4A2 KIF21A CNDP1 EPS8 TPPP NSF TCEB2 NDN MSMO1 GABARAPL1 CPLX2 S100A6 SPRYD3 SYPL1 YWHAQ SPARCL1 RAP1GAP2 RABAC1 CX3CL1 RPL37A GAD1 ATP6V1B2 ASPA CYFIP2 SLC6A17 RPS6 VSNL1 ERBB3 YJEFN3 DPYSL2 MAPK1 USMG5 SYNPR STMN3 CD9 DKK3 SOX11 STXBP1 ARL2BP HCN1 BSN SERINC1 NGRN OXR1 RAB40B MAP2K1 COX7A2L PFKP OLIG2 CLDND1 SEZ6L2 GAPDH TUBA1B NPTX1 ATP6V1E1 PLEKHG1 PGAM1 RFC3 ARF3 SYT11 GRIN3A NCALD NRCAM GLIPR1 PIEZO2 CDK14 KIAA1045 NAP1L3 LIN7B SEPW1 PDE1C MARCKSL1 DCAF12L2 PEBP1 RPL11 NXPH2 AP3S1 NEUROD6 FAM84B PREPL WARS PI4KA FTL DLC1 C19ORF10 ZCCHC24 THOC7 TTYH2 ARL1 AK5 SRP9 RHOB GMFB PPP1R36 LIMK1 TRHDE YWHAG LDHB SYN2 COL6A1 MFSD6 CORO2B KIF1A DYNLL2 FKBP1A RPS28 RPL10A UBC PHYHIP SYNJ1 UBA52 EPB41L3 EPDR1 ATP5F1 CLSTN1 MAGEH1 NDUFV1 TERF2IP BCAS1 SLC17A7 YWHAB ARFGAP2 GNB1 ARHGDIG COL4A5 RAMP1 ANAPC13 WBP2 RPL15 BSG RTN1 DMTN FKBP1B THSD7A NDUFA4 KIAA1755 VWA1 PPP3R1 RPL13 OAT MOBP RPL31 FAM163B GUCY1B3 SSPN CHL1 COX6A1 TBCA LGI3 TMEM63A RAB3C ZNF385A BAI2 GPR37L1 RAB6A FOLH1 ALK JAKMIP1 NAA38 C1QL1 ATP5B RPL26 CSRP1 OPALIN PGRMC1 CKB PPP3CB MAP4 SYN1 TOMM20 ARHGAP35 SUB1 MPL PTCHD4 MTND1P23 CTBP1 ATP2B2 ENSA RPL35 SPTBN1 TUBA4A COPG1 ALCAM TRIM37 PAFAH1B2 IPCEF1 MAP1A ATP6V1F RTN3 DHCR24 NDRG3 MYL6 CARNS1 GRINA LINC01296 ATP2A2 CMTM5 RGS12 UBA1 CNIH3 TOMM7 C2ORF47 CFL2 TIMP2 ATP6V1A BTBD11 ALDOC ISCU PPIA YAE1D1 HTRA1 KLC1 RPH3A NRIP3 IGF1 D4S234E ATP1A3 PRKCB RPS5 UBE2D2 EIF4G2 ATP6V0B CYP27A1 APP CADM3 PTGES3 CHN1 ATP6V1G2 EPHB6 RNASEK-C17ORF49 RPL3 PCDHA4 PCDHAC1 PCDHA10 PCDHA9\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "mixed glial cell" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: PLP1 PTGDS MBP MT-ATP6 THY1 TF PREPL TMSB4X ELAVL2 SYT1 PRNP SEPP1 SRP9 COX7C HNRNPH2 CDH13 SH3GL2 CAB39 OST4 KAL1 ISCA1 SPP1 PIP5K1B UBB CAMKK2 ATP1B1 ATP6V0E2 CCK PON2 USP5 CMTM5 CALM2 SKP1 ERBB4 EIF4G2 MARCKSL1 CLU GPM6A RELL2 BAI2 FAM3C PROX1 RPS10 CNP D4S234E ATP5I RPS6 RPL13A TAC1 CTNNB1 FAIM2 SEMA3B PTPRN UQCR11 RTN3 FAM219A C2ORF71 GRM8 PPP1R14A PRKCE NAPB RPL8 TSPAN7 RHOA BIRC5 HDLBP MAP2K1 TTYH2 ENO2 CFH SNAP25 ACTR1A PRUNE2 TMEM235 NEK7 PRR18 MTCH1 KCNMB4 RAB3A MLF2 MT-CO1 APOD CLDN11 MTRNR2L12 CHGB RAB3B PHYHIP PHYHIPL NUP37 MED31 PGAM1 PGM2L1 CLDND1 SCD ACOT7 EIF1 NDUFS5 KCNJ10 TCEAL5 RPL32 NAP1L5 ACTG1 ATP5J FAM174A THBS2 RBX1 STMN2 YAF2 OPA1 ASPA NDUFB3 CRIM1 VAMP2 SHC4 TMEM14A STMN4 CREB5 RP11-597D13.7 AZIN1 GABRA1 ZNF385D NDUFB7 PADI2 TMEM35 CLTA RPS4X ARF5 DYNLRB1 TUBB3 RPL36A MIF PLEKHD1 HNRNPA1P40 PCDHGA6 TBC1D15 DNAJC21\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "mixed glial cell" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: ZNF385D MT-ND2 PLP1 MT-CYB MT-CO3 SERF2 MBP SYT1 MT2A MT3 PTGDS HSP90AB1 MT-CO1 ATP1A1 QDPR PSAP RPS15 MT-ND3 TF MT-ND1 NDUFA12 ATP1B1 CRYAB RPL3 RTN4 MT-ATP6 NFIA RPS12 FTL SCD5 DPYSL2 RPL32 RPS6 PLCB1 CLU ENPP2 RAPGEF5 MAP1B SYTL2 UBL5 RPL31 MOBP RPS27A RAB3B CNP HSP90AA1 GRM3 MT-ND4 RPL37A COX7C MT-CO2 MTCH1 OLIG1 SPOCK1 RPL38 MYRF MYO10 RPL26 CD9 STRAP PPP2R2B CSRP1 OAZ1 DNAJA1 OPALIN PPP5D1 HSPA4 UBE2D2 KCNMB4 CCDC124 EPS8 TCEB2 ALDOC HMP19 ATP5J KIF3C RPL13A NGFRAP1 SLC17A7 JUND MAG TRIM47 APOD DKK3 HDLBP SERINC3 BCAS1 COX4I1 WDR47 SOX9 RPL41 KIF21A ITM2B IGFBP5 MGST1 RPL15 STMN1 SYN1 SLC1A3 SULT4A1 SERINC1 ZFP36L1 MT1F FXYD6 HAMP SV2B GAPDH CCK NDUFS5 ATP5H VAMP2 APOLD1 GPR56 CDK14 EIF1B POLR2K SLC35B1 PODXL CPE C4ORF3 PTMA RPL23A BSG KCTD12 COL21A1 DCTN1 POLR2I SNRPE GFAP FIGN LMO4 MAP1A FAM107B NMNAT2 LIMK1 MTRNR2L12 BSN THYN1 CHN1 RP11-175B9.2 SEMA3C TBCA KIF1A H2AFZ CBX6 C18ORF32 PMP2 COX6C ASPA MT1X YWHAQ BAI2 CTSD TTYH2 PPP3CA KCNK1 PADI2 TLE4 FSTL5 NDUFA4 RGS12 FOS PAX8 MRPL33 UQCR10 RPL35 RIT2 SKP1 ARX TSC22D4 ATP6V1A MORF4L1 NDUFC1 PKM UQCR11 ATP5G2 MRPL55 MAL EIF4G2 RTN3 HSPE1 TMSB4X NDUFAF3 RAB3IP CHCHD2 QKI MT1G MGST3 TUBA1A WBP2 TPT1 RPS4X DRAP1 BEX1 UHMK1 MRPL51 CREB5 ZBTB20 CYC1 TMSB10 HINT1 ZFAND5 DNER GAP43 COL20A1 ASAP1 IQCK SSBP3 GRAMD3 CALM1 ITM2C PTK2B C1QA FRMD4B HSPA8 PPP1R14A CLDND1 GABRA1 COL5A3 CALM2 CRIM1 PTPRS RPL11 SPP1 DDN EGR1 ALCAM FTH1 PLEKHD1 RPL17-C18ORF32 GHITM MTFP1 GJA1 RP11-219A15.1 RPL17 TUBB GTF2H2C_2 TBC1D15 DNAJC21\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "mixed glial cell" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: PLP1 MBP COX7C PSAP MT2A CRYAB CKB MOBP UQCR11 RAB3B APLP1 TUBA1B BCAS1 SERF2 MT-CO3 SLC24A2 MT-CO2 SEZ6L2 RPL8 ERMN RP11-597D13.7 QKI TF FTL SYTL2 SLC1A3 TBC1D15 TOMM22 SLC31A2 NBL1 MT1F FBXO2 RPL11 OLR1 SCD5 ZCCHC17 TPT1 SCD RPL12 NOTCH1 COL4A5 GPRC5B ATP5E FAM107B DCTN1 SRP14 RPL15 KCNJ10 CCK SPP1 ST18 SOD1 GFAP PTMA PFKP LRP2 ATP1B1 RPS27A CCDC124 PDE9A KCNMB4 CMAHP RPL32 NDUFC2 APBB1 MDH2 SERINC3 ANLN EIF1 TMSB10 CLDN11 CSDE1 UBC PEBP1 NCEH1 EPAS1 CPNE2 GPIHBP1 AP3S1 MT-ND2 TSPAN7 NOS1 PTGDS RAB40B DNER CLIC4 RANBP3L ZBTB18 PAFAH1B2 RPL23A LAMTOR1 TMSB4X TCEAL2 PALD1 C1ORF194 PGK1 SERPINI2 PPP1R14A CPE TMA7 PRDX1 MAP1B SUB1 DYNLRB1 BMPR1B PRKACB MAP1A EIF4A2 SERINC1 IMMP1L CD59 RPS6 SPARCL1 TUBA1A RPS15 GPX4 ABCA8 SLC22A17 DPYSL2 PRDM16 ACTR6 ARPP19 MT1X NRCAM MTRNR2L1 UBE2M TMEM63A ARL8A ADCY10P1 NDUFB2 HSP90AA1 ETV5 DISC1 MT-CO1 TMEM144 FTH1 HSPA2 SARAF SLC6A1 SPCS2 NDUFS6 RPL21 RPL7 OR6D1P RPL18A CFH TRIM59 DNAJC21\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "mixed glial cell" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: RAB3B PTGDS MT-ND3 MT-CO2 SNAP25 MT-CO1 GFAP TF NFIA SLC1A2 PLP1 MT-ND4 GPR98 QKI MTRNR2L12 ZBTB20 MT-CO3 CLU MT-ATP6 DPYSL2 SLC1A3 MT-CYB FGFR3 MT-ND2 GLUL MT3 GPRC5B HIF3A GPR56 HSP90AB1 PRUNE2 AEBP1 CHN1 MT-ND1 NEGR1 ACTB TMEM59L GPM6A RP11-111M22.2 NR1I3 PRDM16 MTRNR2L1 SLC14A1 KIF19 PHYHIPL ZFP36L1 APOE ATP5E COL5A3 PON2 CALM1 IGFBP7 ATP5I MTCH1 UQCR10 NDUFA5 NDUFB8 HGF PAQR8 ALDOC GPIHBP1 NDRG2 SYT1 RASL12 RHEB FOLH1 TXNIP KCNA1 ATP9A SELENBP1 TTYH2 S100A13 PGK1 PTMA SKP1 RPS28 ITM2C ZFP36L2 AQP4 CST3 PPAP2B SOX9 LCAT ESCO2 DNM3 TCEB2 F3 TPPP METTL7A EZR RPL23A XAF1 RAB4A BCL6 CMPK1 SLC7A8 EDIL3 CD59 PEA15 RANBP3L MBP NDUFB3 SKAP2 NECAB1 MT2A RPL13A SPOCK3 ID2 APOLD1 ARHGAP24 FTH1 MED10 KIF21A SNRPE CAMK2G C1S SLCO1C1 INHBB FABP7 NRCAM PIN1 DSTN RPL13 RNF11 ARHGAP29 CALM2 SNCAIP MOBP ZIC2 BMPR1B GAPDH SUCLA2 HDDC2 VWA1 CLTC DYNLL1 ANGPT2 PRDX1 PET100 SOX2 MSMO1 RPL38 ASAP2 ATP6V0B DDAH1 SSBP3 TMEM144 GPNMB CX3CL1 IDS MT1M VEGFA PRDX5 CD44 MTRNR2L6 DOCK10 CSRP1 BAALC CXXC4 TOX RGS12 PLOD2 FAT3 RPL11 CALM3 HIGD1A NCAM2 PRKACB UBA52 CARNS1 SUMO2 CTNND2 MANBAL MRVI1 PLEKHH2 TEX2 CISD1 TUBD1 CDK14 RAB7A YJEFN3 ATP6AP2 MGST1 C5ORF63 HDAC1 ITPR2 TLE4 STOX1 IFI16 SDC4 HSPE1 ZCCHC24 PMP2 USMG5 RND3 HAPLN4 NAT8L TMLHE ABCA8 PEBP1 FAT1 ENO2 SCOC SCD NCDN DPP6 SSPN THSD7A FTL ZBTB18 PTPRZ1 SLC9A6 LINC00086 SPARCL1 CFL2 CDC37 OXCT1 REEP5 ATP6V0E2 ARHGAP42 HTRA1 INCA1 COL6A1 NAPB RPS6 EGFR MTRNR2L8 PGM2L1 MTATP6P1 SARAF GPR37L1 TGOLN2 NIPA1 KCNK1 NDUFA13 KLHL5 PRNP UQCRB LYPD1 GSTO1 RPL21 GUK1 GSTP1 SLC6A1 BNIP3 ATP5F1 PTN ATP1A2 CDK17 UBE2D2 PHKG1 TSC22D4 GJA1 RTN3 SEPT4 CLDN11 GRIN1 PKM MAP1LC3B PDLIM5 DGKG RPL12 TMEM63A RP11-597D13.7 CAPZB KCNAB2 AGT NPTX1 TESPA1 ID4 SRP14 HEPACAM MAL GRIN2A HSPB1 SYN1 RGCC EIF1B RORB SYT5 WLS SEPP1 CLSTN1 COX6A1 CLMN IQCK CLDND1 UBA1 MRPL20 NHP2 ELMO1 NPM1P30 STMN1 GNAQ RPS4X QDPR NDUFA4 RPS12 EVI2A EGFL7 LCN12 RP11-20I23.1 ATP1B1 EPHA6 B2M EPHB6 RPL41 SERF2 RPS10 ATP6V0C GTF2H2C_2 RPS26 SYTL2\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "mixed glial cell" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: PLP1 SCD SLC1A3 MT2A TF MBP MT-ND4 SYTL2 ABCA8 MT-CO2 GLUL SCD5 ATP1A2 GPR98 MRAS ZBTB20 MT-CO1 PTGDS THY1 NFIA MOBP RAB3B RNASE1 TMEM235 EDIL3 MT1M SPATA13 PGAM1 MT-CO3 AQP4 C11ORF65 C16ORF13 RP11-664H7.2 METTL7A RTN3 NKAIN4 PPP3CA NECAB1 NDUFB1 FRMD4B PLCB1 FTH1 BMPR1B CLMN RP11-111M22.2 YWHAB COL5A3 THSD7A SH3BGRL3 BIRC5 CAMK2G RRM2B RHOB C1QBP SEMA3B EIF1 MT-ND5 STMN1 CIAPIN1 F3 UBC ASPA MT-ND1 PRR18 GJA1 ERBB3 TRIL SLC14A1 MT3 BEX2 ZBTB39 APLP1 SGCD ATP1A3 ATP6V0E2 CSRP1 PGK1 MLF2 KCNA2 JUND TMEM144 CNP CALM1 PPIA CALM2 SLC1A2 QKI DOCK10 ATP1A1 CADM2 CKB ARL6IP1 RTN4 CSDE1 NDRG2 HMGCS1 MT-ND3 PRNP RNA5-8SP6 FGFR3 MT-ND2 CYP27A1 GDI1 RAD23B MT1E CFL2 RP11-219A15.1 ZNF385D\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "mixed glial cell" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: PLP1 FTL HSP90AB1 MBP MT-CO2 MT-ND2 MT-CYB MT-ND3 MT3 HSP90AA1 MT2A MAP1B RBX1 NDUFA13 CRYAB RPS6 CLU MOBP DYNLL1 DNAJC21 TBC1D15 EIF4A2 QDPR FA2H SERF2 MT-CO3 RPL41 DNM3 SPP1 RPL35 SLC24A2 UBB RPS27A RPL32 TMSB4X RPL11 MAPK1 OLFM1 RPL37A EDF1 ERBB3 TUBA4A RPL23A PEBP1 GAPDH ARL6IP1 PTGDS MT-ATP6 RPL31 SLC1A3 RPL38 GFAP VAMP2 ALCAM CNP EDIL3 STXBP1 CETN2 OPALIN GPM6A RPL13A RAB3B SYTL2 ZNF385D TF LRP2 DPYSL2 ATP1A2 BSG OLIG1 MT1G PPP3CA BAG4 COX6A1 APOL6 NDUFA1 ATP2A2 CYP2J2 NDUFB3 LAMTOR5 COX4I1 FXYD6 HSPA4 TKT BCKDK SALL1 CLDN11 UQCRQ SLC12A5 KCNAB2 ZIC2 WLS RCAN2 PHPT1 PSMB7 GAP43 SNCA TUBA1A GRAMD3 TAGLN2 PTPRS HIST1H2AC PIEZO2 MUM1L1 BASP1 RPS2 TOMM7 TPT1 SEPW1 SYT1 SKP1 MGST3 C2ORF74 BOC MFSD6 UQCR10 RP11-597D13.7 APLP1 PCBP1 TMEM144 NDUFB8 ANLN CDC37 GHITM HHATL ATP5I COX7A2 RPS15 TIMP3 HIGD1B ATP5J2 ACTR10 CHCHD2 FTH1 BSCL2 CPE POLR2J GPRC5B PEA15 VDAC2 UQCRB DOCK10 LDB2 SLC9A6 BEX1 BCL6 SPOCK3 H2AFZ HPN CTNNB1 JOSD2 ATP6V0D1 ITM2A MYEOV2 C9ORF16 NAPB SEPT4 SUMO1 ZFHX4 APOD TIMP2 S100A10 CKB RPL36A GRIN2C SNRPE TBCB EPHX2 APP NCALD CALM1 RPL13 TPI1 ENC1 NARS THBS4 RPL26 HOMER1 TUBB4A NDUFC2 S100A13 MDH2 PEX5L PFDN4 ATP5G1 RAB6A DCTN1 POLR2L CYP27A1 CADM2 MRFAP1 UQCR11 NDUFB1 TMEM63A TMSB10 SH3RF1 TSPYL1 MGST1 SPTBN1 PDLIM5 CYCS RPS5 SCN3B FAM89A GNAQ ZBTB20 NDFIP1 GLUL RAB9A SARAF STON2 SRP14 FAM107B MAP2K4 PTMA SIGIRR SEMA3B ENPP2 RPL17-C18ORF32 DNAJA1 SEPP1 CD59 NAPA ATP6V1G1 C19ORF10 PRKCB CLSTN2 GDE1 SCD5 RPL17 PITHD1 CYP26B1 QKI COA4 TPGS2 MYO10 YWHAB SLC35B1 NDUFA4 NXPH2 GABARAPL2 SNRPN RPS10 IFI27 ATP1A1 RPL7 B2M ISCA1 MIF RPS28 AC244489.1 RPL21\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "mixed glial cell" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: PLP1 MTRNR2L12 SNAP25 MT-CO3 SCD5 RAB3B QKI MT-ATP6 MT-ND2 NRGN PTGDS MTRNR2L8 LMO4 SERF2 MTRNR2L1 SEPW1 MBP MT-ND1 SCG2 DPYSL2 MT-CO2 SYT1 MT-ND3 TBC1D15 TMEM200C STXBP1 CRYAB SLC30A3 HTRA1 NDFIP1 TRHDE NECAB1 RP11-111M22.2 SCD PSMC1 RPL35 HSPA2 APP TTYH2 DYNLL2 MT-CYB MT-CO1 PGRMC1 PRKCB YWHAG RTN3 COX6C TUBA1A EDIL3 NREP SPARCL1 ITM2B ZNF385D BIRC5 CERS6 SRP14 WDR47 ZMAT2 GDI1 LDB2 KLHL5 CACNA2D2 TMTC4 CLEC14A ATP6AP1 ANXA7 NDUFA13 TSPYL4 MAP1B C1ORF115 FAM3C SEMA5A VDAC3 APOD PLEKHG1 GRIN2A VAMP2 PHYHIP LMBRD2 ARF3 PVRL1 C7ORF50 PRNP PPIA FAM198B CD63 TMEM144 MORF4L2 MAP1LC3A NDRG3 SEMA3B PEX5L TSPYL1 DNAJC6 SCN3B NPTXR QDPR OLIG1 FAM69C RPL38 LAMTOR5 CA2 PIK3R1 ATP1B2 TUBA1B SCN1A TMEM160 GRAMD3 NUDT4 ENSA CLSTN1 TMEM35 KIF21A PREPL TMEM59L RPL37A ROBO2 EIF4A2 CAMKK2 MARCKSL1 SERPINE2 PPP2R2C PGAM1 MRAS TUBB2A OLFM1 COX4I1 TBCB PSD3 RPL26 SCAND1 NUAK1 PIN1 CLDN11 PDE1C MAPRE2 TSHZ2 FAM127A RPL23A ATG101 CALM1 NFE2L1 SERINC3 CYFIP2 YBX3 FTL SYT11 ZCCHC24 UBA52 WBSCR17 COPRS KLC1 CALM2 PNMAL1 OST4 MAP1A SLC39A10 ATP1B1 HS6ST3 FOS DYNC1I1 HSPA8 SYNJ1 ELAVL2 CREG2 CTBP1 MMP24-AS1 FRMD4B RPS28 MAST3 CD9 TXNIP ZFHX4 ACTB PPP1CB MME CAP2 MZT2B CNDP1 GNB1 CSDE1 CORO2B CPNE2 PEBP1 ETFB ATP6V1B2 CRIP2 ARL6IP1 LPPR4 CHN1 C9ORF16 NDP FAM84A JUND HHIP RP11-195F19.5 TGOLN2 TSPAN7 SUMO2 BEX4 TTN PROX1 VAPB LRMP TBR1 SNRPN NEFL PTMA FAM163B RARRES3 GRIN1 PRKAR1B VGF GLUL SCAMP5 REEP2 TCEAL2 PKM MT-ND4 FAM107B UQCRFS1 ATRN NDUFB7 RORB TPPP TMEM258 BCAS1 IDS ATP1A1 KCNJ10 RAB40B HCN2 OR6D1P RTN4 TMEM230 THBS2 RSL24D1 MARCKS SEZ6L SYT17 RPL21 PPDPF CLPTM1 DCLK1 ITGA11 CLDND1 ZBTB20 CALM3 SPSB2 CARNS1 DNAJB6 HNRNPH2 ARL8B TMCC3 TMA7 PLEKHG3 PLEKHD1 RPL17-C18ORF32 C18ORF32 HNRNPA1P40 PTCHD4 MIF\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "mixed glial cell" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: PLP1 MBP ZBTB20 MT-ND2 RPS27A MT-CO3 HSP90AA1 FTL PSAP PEBP1 MAP1A RPS12 CLU NDUFB7 KLC1 MT2A SYT1 CCK TGOLN2 RPL26 NDUFB4 TPT1 MOBP TMSB4X ATP6V1A QKI CHN1 GHITM MT1F DNER ZCCHC24 PTN CKB COL6A1 CLDN11 IQCK PRDM1 RHOB PRIM1 ALDH1L1 CREB5 TRIM47 TMA7 NDUFB8 UBB SLC1A3 PIEZO2 CADM2 TMSB10 CISD1 VAMP2 ATP9A GRIK1 PLD3 OAZ1 ATP6V1F TMEM144 HDDC2 ERBB3 TSC22D4 CALM3 RTN4 SCD PSMB7 RPS2 PNMAL2 TMEM63A FAM189A2 ATP5I RHEB MT-CO1 ATP5E OPALIN BEX4 SLC38A1 SOD1 CRYAB VDAC1 GAP43 RAPGEF5 MZT2B ITPR2 RAB40B FTH1 FAIM2 GPRC5B KCNMB4 NPAS3 NDFIP1 MAP7D1 TPI1 GDE1 THOC7 B2M TUBA1A ALCAM MT-ND4L PRKCB RPL8 SNAP25 LAMP5 ELMO1 ATP6V0E2 RP11-597D13.7 DEXI SCN1A VDAC3 RPL11 STMN2 DNM3 SEPW1 KCNJ10 TNS1 CALM1 EIF1B DSTN NPTX1 SLC1A2 CD63 JOSD2 EDIL3 GPX4 TTYH2 SEC61G GRM3 GNAQ LRP2 HDAC1 AHNAK CNTNAP5 CNTNAP3 SLC9A3R1 SELENBP1 PIP4K2A LINGO1 MT-CO2 DYNC1I1 YWHAZ UQCRH NDUFS6 SRP14 PDGFRB FKBP1A CTNNA2 ARL6IP5 NGFRAP1 RPL13A MT-CYB GNG5 RNF181 MT-ND3 TCEB1 RPS4X MT-ATP6 HGF TLN2 ACTR1A CNP CDH19 APP SLC24A2 ATP1A2 CLMN PRR18 SYTL2 ZNF385D RAB3B SERPINA3 NGRN OR6D1P MTND1P23 TRIM59 MT-ND1 RPL18A ATP6V1G2 HNRNPA1P40 TUBB PLEKHD1 RPL21 GTF2H2C_2\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "mixed glial cell" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MT-CO3 MT-CO2 CALM2 MT-CO1 MT-ND2 MT-ATP6 MT-ND4 MT-ND3 MTRNR2L1 HSP90AA1 PLP1 TF ARL6IP5 PEBP1 PRNP ITM2B QDPR APLP1 MT-CYB ACTB TMEM144 PPP1CB SPP1 MOBP PSAP RPL13A RP11-111M22.2 KIF1A PTGDS EIF1 RAB3B SYTL2 LINC00087 SPTBN1 NPTX1 BEX1 MTATP6P1 MTRNR2L12 DOCK10 CHN1 PNMA2 SPOCK1 RTN3 TBC1D7 UTRN NDFIP2 LMO3 NFIA GPX4 PROX1 TPPP PEX5L SPOCK3 MT-ND1 RPL3 PCDHGA6 AP2M1 NEGR1 SYT1 ZBTB20 TIMP2 DNAJC21 TBC1D15 MTRNR2L6 GRM3 THY1 SLITRK6 AP2S1 DYNLL1 RPL31 CXXC4 PPFIBP2 TUBB2A TGOLN2 BAG4 GAP43 TENM1 NAA38 SYN1 NPTN RNF152 KLC1 ATP1A3 MAG HSPA8 DNER ACTG1 OLIG1 DNAJC6 CFL2 MBP TUBA1B CLIP3 RAN SNN SCAMP5 TAGLN3 UBE2D2 SYT11 GLO1 GPCPD1 TMEM123 ATG9B RTN4 SKP1 TMA7 RAB6B TSPYL1 FXYD6 IPCEF1 LMBRD2 TOMM20 STMN3 MGST3 ELAVL2 TUBA4A ZFAND5 LRP2 TTYH2 MAP4 TSPYL4 CBX6 PRUNE2 ZFHX4 BNIP3 PPP1R9B PVRL1 ATP2B4 GNG2 PLCXD2 TOMM7 ZNF343 SNX10 SARAF ATP5G3 CD9 CLDND1 ATP6V1B2 CAPZA2 ADAMTS1 RPL11 MED10 SYNPR HPCA KCNAB1 APOD YWHAG RPS4X ANLN PREPL C1ORF95 RAB27B HEPH CD99L2 PTPRS HS3ST5 CDH8 COPE ZCCHC17 TMEM59L EDIL3 APOLD1 IFI6 SPARCL1 ABHD8 ATP5E RAB2A NUDT21 PCDHGA5 PDK4 SNCA TMOD2 ENSA PGM2L1 BIRC5 NFE2L1 TMSB4X ENO2 PADI2 ZDHHC12 GHITM TP53I11 ADARB2 NKX6-2 MYBL1 CTGF EIF4A2 MORF4L2 RPL12 SMS LMO4 ATP6V0B WFS1 SRP14 CDK5R1 SNCB NDUFA5 AES KIF19 MTND1P23 RAB9A CREB5 PRKACB GDI1 RPL32 PJA2 RAB3C PAK1 VCAN MTG1 NBL1 CAP2 TXNIP RPS3A DMTN CARNS1 RPL37A ADAM23 ALCAM RFK RNF212 ATP6AP1 PLD3 CDK17 BRK1 PCMT1 PCSK5 MORF4L1 PEA15 CYBRD1 APP CLDN11 PGRMC1 WDR47 PPM1A MT-ND4L TLE4 UBE2N MAP1B KIAA1045 IFI16 OCIAD1 ARL6IP1 SERINC3 REEP5 PLCB1 COX6C FGF12 SLC24A2 CRIP2 PRKAR1B GLRA3 C6ORF141 SLC1A3 NGRN HBA2 ALDOA HBA1 GABARAP PSMC1 CNTNAP3 NSF HNRNPA1P40 PLEKHD1 AC244489.1\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "mixed glial cell" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: CLU TF PLP1 ZBTB20 MT-CO2 TMEM144 CRYAB MT-CO1 QDPR RPL32 CALM2 MT-ND4 FTH1 MBP AQP4 MT-CO3 ALCAM PSMA7 DPYSL2 GFAP QKI SPOCK1 TMA7 ZFP36L1 RPL38 LRP2 CSRP1 ANKRD18A MT-ATP6 NFIA PAX6 SYTL2 RAB3B MTUS1 FOLH1 TPPP MT2A MT3 APP MT1E TUBA1A PPP3CA COX17 FTL CD9 HHATL AP2B1 GJA1 TXNIP PADI2 TSC22D4 TPT1 EDIL3 PEBP1 SPP1 SEMA3B PIEZO2 OLFM2 PSMC3 ANGPTL4 CNP BMPR1B SERINC3 SLC1A2 FGFR3 MORF4L2 HSP90AA1 BAALC GPR98 UBC SERF2 FABP5 PRUNE2 STON2 DYNLRB1 PPAPDC1A UQCRC2 DCTN3 PDK4 FSCN1 CLDND1 COX6C PPAP2B SELT PCYT2 CLMN MT-CYB IFITM3 NAT8L RPS4X PREX2 TGOLN2 ZCCHC24 PEX5L GPR37 CAPZA2 MTRNR2L1 RAB11A MAP1A ATP5E RPL21 SYPL1 SYT11 HEPACAM ANXA4 PRKACB ETFB AZGP1 CALM1 APLP1 ATP5G2 CD44 CFL2 ACTB PTGES3 YWHAB MTCH1 SCOC FKBP8 MRPL47 CADM2 TLE4 CPNE2 PGAM1 RPL23A SLC24A2 MRVI1 NDUFAF3 NDRG2 NPTN ATP6V1C1 DNER CPE APOD RPS2 SPTBN1 SLC1A3 CCDC115 RTN1 NR1I3 GSTO1 SLC38A1 MTRNR2L12 RSL24D1 AHNAK CLTC FAM107B KIF1A RAB6A LDOC1 EXTL2 SCD BCL6 YWHAQ APBB1 HIF3A TCEA2 PRDX1 PKM RPS27A ERMN DPY30 SARAF HNRNPA1P40 FIS1 EFEMP1 RPL17-C18ORF32 RPL17 GABARAP BSCL2 TRIM59 AC244489.1 TBC1D15\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "mixed glial cell" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: SLC1A2 PLP1 SLC1A3 ZBTB20 PTGDS CLU MT-ND3 CKB ACSS1 VEGFA FTL RP11-111M22.2 GPRC5B GLUL CFH APOE TUBB2B CREB5 MT-CO3 MARCKS HHIP MTCH1 RPL41 PTPRS PPA1 SOX2 SCD5 ATP1B2 HIF3A ITPR2 EIF1AX FA2H OPA1 CST3 AQP4 MTRNR2L12 MT-ATP6 HEPACAM COL9A3 CTDSP1 MTRNR2L8 SOX9 SPOCK1 NRCAM ITM2B TOMM20 FGFR3 TMEM63A MTRNR2L1 SLC25A48 ID4 DNAJC21 CD63 S100B NTNG2 SNCA TMEM144 NDUFC2 RHEB DNM3 RNASE1 PTMA METTL7A ATP13A4 RAB4A ARPP19 VAMP5 MYRF EDF1 CALM1 MAP4 PLEKHG3 MT-ND4 COL5A3 ATP1A2 WIF1 ATP5G2 CD58 SDHAF1 MT-ND4L AURKAIP1 PAQR8 CA8 C1QL2 CHL1 LRP1B SERINC3 MAL NCBP2-AS2 ERMN COL4A5 TCEB2 PIN1 RGS12 SLCO1C1 RNA5-8SP6 TMSB4X BAALC PTN SERF2 QKI JUN ASAP2 TUBA1B CADM2 EID1 TBCB RORB PPP1R14A KLC1 NDUFB4 GRIN2C AC011043.1 PPARGC1A PRDX5 IGFBP7 PCDHB2 INSIG1 SNAP25 SCD RPL12 PFKP PPAP2B OPALIN UQCR10 MAF FAM189A2 UQCRQ FOXO1 GNAQ NFIA SPI1 UBA1 PLTP HTRA1 SYT11 SEPW1 SIRPA WBP2 HSP90AA1 RPL38 CNTN1 NDUFB11 MTX3 RANBP1 PTPRM GDI1 GPM6A FAM111A POMP CALM2 RAB34 SPARCL1 GPR37L1 APLP1 MT-CO1 GPR98 RPS2 PVRL1 ITFG1 ENO2 PIK3R1 RAB3B SYTL2 ZNF385D AC244489.1 RPL26 PTCHD4\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "mixed glial cell" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MBP SPP1 NFIA PLP1 MT-ND1 GPRC5B RPS15 ALCAM APLP1 SYTL2 TF STMN1 RPL38 TUBB4A CLDND1 PTGDS SLC1A3 QKI GFAP TMSB4X SPARCL1 ABCA8 RTN4 RTN3 RPL13A TERF2IP SH2D6 PADI2 ZBTB20 GLUL RAB3IP SEPW1 RAB40B NAA38 DNAJC21 TBC1D15 PAQR8 APOLD1 DYNLL1 C11ORF65 ASPA SEMA3B S1PR5 MT-ND3 BCL6 MT-ND2 ARPP19 ERBB3 ST18 ITM2B HSP90AA1 QDPR TPPP OCIAD1 TBCB CPNE2 SERINC1 SLC35B1 CTSD COX5B PEBP1 ARHGAP24 COX8A CSRP1 ARL8A RPL8 MT-CO1 C10ORF54 ATP5E CFL2 KIF19 MT-CO3 CD63 CNP MAPK1 NFE2L1 COX7C SERINC3 LAP3 MTRNR2L12 PEX5L PRKACB SEPT4 RANBP3L RPL41 PDE1C SPATA13 RPS6 S100A13 ALKBH7 SUB1 ITM2C APBB1 AGT FTH1 CFL1 GPR37 C10ORF90 UQCRB PRUNE2 OPA1 NDUFB10 TMTC4 ATP1B1 MAP4 EIF1 GPR37L1 UBA1 MYO10 WFS1 GNAQ TMEM144 NDUFA2 VEGFA MT-ND5 DLC1 APOD RP11-597D13.7 SLC24A2 ZFP36L1 ANAPC11 CREB5 CYB5R3 LMO3 MT1X UQCRFS1 TUBA1B MAGEH1 UBA52 TUBA1A EDIL3 CADM2 RPS27A SPOCK3 LRP2 HHIP ACACB ITGB4 RPL39 JUND CLTC MT3 SLC1A2 CDK17 ATP5I ANLN MOBP PMP2 IQCK ESCO2 PSMB3 THY1 RELN ATP1A3 RPL21 AC244489.1 RAB3B\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "mixed glial cell" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: PLP1 MT-ND1 TF MT-CO1 CADM2 MT-ND3 MBP ATP1B1 SCD MT-CO3 MTRNR2L12 SCD5 OPALIN APLP1 ZBTB20 MT-ND4 RAB3B GPR37 MT-CYB MT-CO2 TTYH2 HHIP MTRNR2L1 GLUL PIEZO2 CREB5 MT-ATP6 NFIA ITM2B HSP90AA1 FTL PDE1C FAM107B BCAS1 CALM2 MAPRE3 EVI2A HHATL ARPP19 ADARB2 VCAN NKAIN4 RPS28 OCIAD1 MOBP SPOCK3 GNAQ ZNF385D TIMP2 DNER HINT1 PRNP MYEOV2 ALCAM MAL TMEM144 DPYSL2 MGST3 RPL36A CSRP1 TMEM258 RPL37A CRYAB SYPL1 OLFM1 SPCS2 ALDOC TSC22D1 SCG2 SEPT4 RGCC UQCRB RANBP1 RPS19BP1 CD24 WIPF1 CLDND1 MT-ND2 YWHAQ FOS DNAJC6 ST6GALNAC3 SSTR2 HSP90AB1 ERMN MAG LAMTOR1 NUAK1 DOCK10 RAB40B CHL1 SOX21 APP MYRF PEX5L ATP2A2 NDRG3 BIRC5 C7ORF50 HTRA1 EDF1 CDK17 ABCA8 GNB1 CA2 NDUFA1 KLHL5 TUBB4A ATP6V0E2 PCDHGA6 RPS5 EDIL3 CHMP4B FAIM2 CALM1 CLMN CTNNA3 NDUFA13 PROX1 ATP5G2 SLC1A3 RTN4 SH3RF1 ATP5O CD63 PHYHIPL ARHGDIA YWHAB ACTR10 PIP4K2A PTPRS SMOC1 ANLN LRP2 CNDP1 PRUNE2 ZNF536 CLTC GAPDH JUND GOLIM4 GDA ENO1 CHMP5 ZFP36 LAMA4 SEPW1 CD9 TMEM63A SUB1 ATP1B2 TXNIP PCDH17 RPS6 ATP13A4 MTRNR2L6 HDLBP EID1 ADSS TNFRSF11B RELN COX7A2L PRKACB SALL1 PET100 TCEB2 UBC ACTB RPL10A PTGDS MAP1B MT-ND5 HAPLN2 RP11-597D13.7 QKI HSPE1 ITGB4 EIF1 PLS3 LCAT NGFRAP1 OLIG1 CTSD RNF181 RPL21 UBE2N PPP1CB ATP5J RPL13 IDS ALDOA MORF4L1 FTH1 GTF2H2C_2 SNAP25 CFH DNAJC21 TBC1D15 SYTL2\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "mixed glial cell" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: GLUL MT-CO1 SLC1A2 MT-ND4 MT-CO2 PLP1 MT-ND3 MTRNR2L1 FTL SERPINE2 SPARCL1 SLC1A3 ZBTB20 ID4 MTATP6P1 TSPAN4 WFS1 MT-CYB SPP1 FTH1 PXDC1 ITM2C MBP MT-ATP6 CNTN1 SYT11 TF DNAJC21 TBC1D15 ACACB MT3 CYFIP2 RBX1 LHFP NDRG2 FAM219A MTX3 NFIA CNP PPP3CB FAM84B PAQR8 HGF MT1E ADORA2B RPL35 UQCRH GPX3 GPM6A EPS15 YIPF3 CRYAB MT-CO3 MOBP SPCS2 CTSD ARHGAP35 NAT8L OR6D1P CREB5 ABCA8 STON2 C1QA ACSS1 ACTR1A EDIL3 SLC7A10 MRVI1 MT1G PRDX2 TRIL F3 PPTC7 MT2A ARHGAP24 DNAJC6 ZNF385D NRCAM NKX2-2 UBC NKX6-2 NCEH1 SRP14 RPL12 RPS28 RPL31 GRM3 BRICD5 H2AFZ APP QKI FRMD4B COL6A1 MYRF PRDX1 GJB6 TMEM147 NCKAP5 PTMA SH3RF1 COX7C SOD1 ITM2B SPOCK2 RHEB POU3F1 PBXIP1 EIF1 EPS8 PRKACB ACTB CLU MT-ND2 MTRNR2L6 TRIM59 RPL3\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "mixed glial cell" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: PLP1 MBP MT-CO2 TMEM144 MT-ATP6 SLC24A2 CADM2 RAB3B MT-CO3 SEPP1 MORF4L1 SCD MT-ND3 FSTL5 SPP1 METTL7A FTH1 ATP1B1 TUBA1A AIF1L PTMA SNAP25 GFAP SERINC1 TMEM88B MTUS1 CLMN RAPGEF5 MTRNR2L12 KIF1A CLDND1 GPR98 MOBP C18ORF32 MT-ND1 PLIN2 JUND GPRC5B UBA52 ZBTB20 RPL23A PTGDS MT-ND2 SLC1A3 HIST1H2AC FTL UBB TF STMN1 SUMO1 CHN1 SARAF CYP27A1 ANLN NFIA RPL38 ARL6IP5 ATP6AP2 RPL13 RPL36A BIRC5 PTGES3 PSAP PPA1 DPY30 GAPDH ALDH1L1 RPS28 CTNNB1 MAP1LC3B POLR2L RPL15 THY1 PAQR8 CALM3 PGK1 ABCA8 MLC1 WASL RPS15 ATP5A1 MTATP6P1 C14ORF2 S100B KLC1 GNAQ PRUNE2 ASPA RPS6 NOTCH3 CBX6 ACSS1 CSDE1 MAP1B SPOCK3 SCD5 SDC4 TUBB4B DYNLL2 TTYH2 CCDC154 ACTR10 CRYAB RPL37A ATP5B LRRIQ1 RPL18A AZIN1 FAM107B QKI SERPINI1 FAM189A2 VAPB PCDHB4 RTKN RGCC RTN3 MYO10 NFE2L1 CNP PAX6 RPL6 ITFG1 YWHAB VWA1 FOXO1 NHP2L1 NDUFAF2 PCDH17 LIG1 APLP1 SPTBN1 PADI2 ACTG1 CCDC152 GDI1 RBX1 SLC1A2 CTBP1 PKM RP11-111M22.2 MTRNR2L1 NDRG2 HEBP2 TGOLN2 RP13-492C18.2 PRNP MTRNR2L8 B2M POLD1 CHADL PDE1C SOD1 ACTB ATOX1 APP UQCRH PTPRS HSP90AA1 RPL12 UBE2F ARL8A GLUL RPL26 MTRNR2L6 RPS12 MIF HNRNPA1P40 PLEKHD1 TBC1D15\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "mixed glial cell" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MBP MOBP PLP1 HSP90AA1 CD63 FTL MT2A MT-ND2 RPL37A SEPW1 RPL26 PRKACB RPL39 RTN3 AP2M1 PTMA KCNMB4 MT1E MT3 MT-CO1 SLC1A3 MT-CO2 NEGR1 RPS4X MT-ND4 KIF21A EDIL3 SPP1 TF ATP5I TBC1D15 DNAJC21 RPS27A ANAPC13 SLC9A6 RPL10A NDUFC2 COL9A3 HSPE1 PACSIN1 MAP1B ERBB3 ENC1 MGST3 CHL1 FXYD6 POMP KCNJ10 CCDC110 TMSB4X DYNLL1 MAPK8IP2 COX6C TMEM130 CISD1 CDH19 UQCR10 IQSEC1 CLDN11 PTPRS SYTL2 STMN3 NDUFB8 GAPDH TNS1 UQCR11 SCD CNP GDI1 ITFG1 ATP5E GORASP2 STMN1 GPR98 CYB5R3 ANAPC11 SPOCK3 NDUFB3 PI4KA SNX3 TAGLN3 GPR17 MAG TSPYL1 EFHD2 COX6A1 RPL13A ITM2B CALM2 RTKN PNMA1 TMEM147 CP SLC1A2 UBC CLTA RAB3B PRDX1 CYFIP2 EID1 PTN RPRM EIF1B RPS28 EDF1 TIMP2 PPFIBP2 IQCK DPYSL2 THYN1 SNCA COX7C MT-ATP6 MT1G TMEM235 ATP6AP2 PRIM1 FOXO1 RTN4 RPS15 FTH1 MT-CYB MAP1A PSMA7 EIF4A2 MT-CO3 RPL8 ATP1A2 BEX5 FAM107B ZNF385D CDC37 SEPT4 ARL8B RAB11A ARPC5L TUBB4A NAPA RPS6 NFIA ROBO2 DPP6 CARNS1 RPL23A ESCO2 SPARCL1 COX4I1 CRYAB PGRMC1 RPL11 HSPA8 UBA52 MTHFS RPS10 RPL41 RP11-20I23.1 RPL17-C18ORF32 RPL17 ATP6V0C\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "mixed glial cell" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: PLP1 MBP CNDP1 MT-CO2 MT-ND2 NFIA RTN4 MT-CYB QKI MOBP ZCCHC24 GLUL ITM2B MT-ND1 MT-CO1 CADM2 MT-ND4 PLEKHG3 HIGD1A NAPB SLC6A1 ATP1B1 PSMB7 PIK3R1 MT3 ALDH1L1 TTYH2 ZBTB20 CNP SLC1A2 GPM6A PEBP1 SPCS2 ATP1A2 NKX6-2 ATP1B2 HHIP MT2A SLC1A3 HSP90AA1 LAMTOR5 MTUS1 MTRNR2L12 SCD5 EIF1 SYTL2 RAB3B DNER HMGCR ZNF350 WASF1 DNAJB9 TMEM88B METTL7A ATP6V0E2 KIF21A TMSB4X RPS12 TMA7 SYT11 PPAP2B ACTG1 ATP1A1 SEPT4 MYRF SLC24A2 PITHD1 OLIG1 CLU ST18 PET100 RPS27A GRAMD3 NDUFB2 ZFAND5 TXNIP NDUFS6 APLP1 CDH19 CRYAB YWHAB CLDND1 MTRNR2L1 AK5 ATP5J UBL4A TCEB2 DNAJA1 ATP5A1 PJA2 RPL12 RAB6A PTMA NGFRAP1 ZBTB18 RAP1GDS1 LRP4 MAP1B PRNP PTGDS HEPACAM RPL36A GRM3 YWHAG MARCKS RHEB MTND1P23 SERPINE2 CLMN MAP1A STMN1 NOTCH1 ISOC1 OAZ1 ANAPC13 NECAB1 MT-ATP6 GJB6 APOLD1 BNIP3 FGF2 TUBA1A FIS1 ACTB ARL8B NACC2 HSP90AB1 GJA1 PEX5L CSRP2 PMP2 SPTBN1 AURKAIP1 PRDX1 NDRG4 SOX2 TMOD2 SPOCK1 FTH1 RPL7 VEGFA STMN2 ACSS1 C11ORF84 GHITM C14ORF132 ETV5 ALDOC GPR37L1 APOD CTNNA3 CA2 SSPN ERBB3 HOPX FRMD4B RPS6 EVI2A CPE MT1M KIF1A PRDX2 TGOLN2 PPP1R14A CTNNA2 RP11-111M22.2 RPL41 RNASEK-C17ORF49 RP11-219A15.1 NR1I3 TUBB ARFGAP2\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "mixed glial cell" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MBP PLP1 MT-ND2 HSP90AA1 MT-CO2 ZBTB20 CRYAB QKI RAB3B SYTL2 TF PTMA OLIG1 RPS15 ATP5I DNAJC21 MT-ND4 SLC1A3 RPS27A COX7A2 MT-ND3 PTGDS TMSB4X RPL17-C18ORF32 MT-CYB RTN4 CD63 S100A6 TLE4 COX7C DPYSL2 MAP1A DNM3 CBX6 APP EIF1 SEPW1 RPL23A ATP6V1E1 HMGCS1 PSAP SCD NDUFA13 NDUFS5 RPL32 SEPP1 MOBP NDUFB1 CLMN SOX6 RPL38 MT2A RPL6 PCDH17 ENPP2 SIRPA ARL6IP5 CPE GAPDH C16ORF13 HEPACAM CAPZB PLEKHG3 SSPN NME1 TTPA CD44 MAPK1 MAF HIST1H4H CTD-2020K17.4 GFAP RAB3C CNP DYNLL1 PHB PON2 CALM1 GSTP1 PCP4 PDE1A LL0XNC01-16G2.1 PIK3R1 BASP1 SAP18 NTNG2 NFIA PPAP2B STMN1P1 YWHAH PTPRS SEMA3C PTGES3 HHIP CNTN1 SLC7A1 RTN3 CP DNAJB6 SLC35B1 ITM2C APLP1 UBL5 RP11-195F19.5 VPS35 CRYM ARHGAP35 UBB SOX10 RPL37A NDUFB3 NDUFAF2 CLSTN1 UBE2E3 ATP6V1C1 COX4I1 APOE ARPP19 RASSF3 PRDX5 NRCAM MT-ATP6 SYT1 RPL26 SERF2 MGST3 RPS4X HK1 PDGFRB COX14 TUBA4A PSMD12 NDUFB4 GSTO1 MCHR2 RPL35 HSPE1 SOX2 MT1X ATP5J EHD3 CACNG3 GJA1 TMEM59L SDC4 TCEB2 AP1S2 PPDPF ID2 GDI1 PDE1C ABCA8 SOX21 ATP6AP1 TMEM144 ATP5E GPM6A MAP4 MT1E RPL7 NFATC2 DNAJA1 GAP43 MIR6723 RPL39 TMSB10 NIPA1 CALM2 PSMB7 EDF1 STMN2 ERMN ATP6V0B COX6A1 RPL41 SH3GL2 ACOX2 OAZ1 ATPAF1 SFRP1 NHP2L1 ARL8A DCTN3 CDK17 COL6A1 SPARCL1 HSP90AB1 SKP1 FTL BCL6 RNASE1 CHN1 RAPGEF5 PLIN2 AP3S1 COX7B STUB1 PNMAL1 BLOC1S1 AES CKB MT-CO3 CCDC141 EPB41L3 OXR1 FARSA NAA38 COX7A1 MT-CO1 THY1 RHEB VDAC3 RPL15 SPP1 TMCC3 RPS3A PHPT1 ARHGAP24 PAX6 QDPR ENO2 S100A1 EIF1AX DPY30 SCN1A IGFBP7 CSDE1 CAPNS1 ANGPTL4 TERF2IP TMEM150C NAPB SLC1A2 ATP5F1 DISC1 TRIP6 SEZ6L2 USMG5 SOX4 ATP5H RPS12 C14ORF2 RPL12 TUBA1B MRPS21 COX6B1 PET100 GPRC5B SCG2 ARL6IP1 VAMP2 ANLN PDLIM5 SAMD11 TXNDC17 RPL31 PPP2CB ARF3 EVI2A HSPB1 MTND1P23 BIRC5 TRIM59 FTH1 RP11-219A15.1 RPL21 B2M FKBP1A MT-ND1 RPL36A GTF2H2C_2 SSTR2 ATP6V1G2 RPL13A RP11-597D13.7 ANKRD20A11P PLEKHD1 ZNF385D NR1I3\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "mixed glial cell" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MBP PLP1 MT-CO2 CLDN5 MT-ND3 MTRNR2L1 PTGDS SPP1 UBC HHATL NDRG2 MT-CO3 EDIL3 MT-ND4 NFIA CTSD TF LAMTOR1 RPL13A RTN4 ABCA8 SYTL2 FAM107B GPRC5B GADD45B CALM2 GPR56 RPS2 MT-ATP6 CLSTN1 CDH19 MT-CO1 RAB3B MTRNR2L12 PDE1C MAPKAPK2 SEPP1 CNDP1 TPD52 BRK1 UBL5 APP MT-CYB ZFP36 BCL6 TANC1 ATP10A PSD3 NAP1L3 MT2A RPS3A KLF10 RPL37A GRAMD3 SLC2A1 GAPDH RPS27A ITM2B RPL31 GLUL NKX6-2 SPOCK1 TPI1 PCDHA4 AP2S1 EDF1 ZBTB20 TOMM20 SPARC APLP1 PSMD12 OLFM1 PREX2 SCD5 RAB6A PEX5L ATXN10 PTMA SLC24A2 APOE FAM69C TPPP SCD LYNX1 JUND SH3RF1 SEPW1 PPIA NDUFS5 ATP2A2 VAMP2 ACSS1 TSC22D4 ATP6V0B PSMC1 PTPRS RP11-597D13.7 MYRF MT1X COX14 PPP1CB PAQR8 CREB5 PCDHA9 ALDOC SPATA13 PGK1 JUNB NDUFA4 DNAJC6 TMEM63A HSP90AB1 FLT1 LGALS3 MOBP TRIM47 ADARB2 TMSB4X TMEM258 LANCL1 RELL1 RPS19BP1 SARAF EPAS1 ST6GALNAC3 ATP5A1 SERF2 UQCR10 ENG PRUNE2 PEF1 CLDND1 PSAP CSRP1 RTN3 LIG1 TMEM88B QDPR PEBP1 GPR37 ARL8A CHL1 KCNMB4 RHOA TNS1 RTKN KLC1 RPL35 COX6B1 QKI CRYAB RPL6 PADI2 VWA1 MTCH1 CLDN11 NOS3 YWHAB NDUFC1 HSP90AA1 PCMT1 GNAQ COX7A2L ATP1B1 VEGFA C11ORF84 ICAM2 REEP2 ATP6AP1 PIEZO2 RLIM CLMN ALDOA MTRNR2L6 RNASEK-C17ORF49 RPL41 DNAJC21 TBC1D15 RPL7\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "mixed glial cell" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: PLP1 MT-CO1 KIF1A SNAP25 MTRNR2L1 SYT1 PRKACB HNRNPA1P40 CHN1 SIRPA MBP PTGDS PRNP MT-CO2 VAMP2 CALM2 IDS BEX1 RPL32 STMN1 ARL6IP1 NDRG4 ITM2C SNCA PEBP1 SULT4A1 MT-ND2 PPP1CB KIF21A ATP6V0B PTCHD4 CTBP1 REEP5 FXYD6 HCN1 MYRF SYT11 PADI2 RPL35 SPP1 CLTC TMSB4X MT-ND4 COL9A2 RPL21 TMSB10 MYRIP BIRC5 ACTG1 PSAP GAPDH HSP90AA1 CCK BASP1 GPR158 RPL41 ARL4C MRAS SPTBN1 OPALIN KCNAB1 FTH1 RP11-111M22.2 ATP6V0E2 PTPRS TOLLIP CALM1 PITHD1 GPM6A GRIN2A OPA1 KIT APP ALDOC MT3 COX6A1 CNP RELN HRC FAM219A INPP5F ATP1A1 CLU MTRNR2L12 MTRNR2L6 SCN1A ARL8B TBC1D15 RAB3B ZNF385D CFH ARFGAP2 TF VWC2L GRM3 FLOT2 RGCC PDGFD MT-ND3 RPL38 REEP2 CDK17 WASF1 DYNLT3 ARPC4 WDR47 ASAP2 SERINC1 SEPW1 RABAC1 CDK5R1 RBX1 SYN1 SLC7A5 IQSEC1 UQCRQ PID1 ZCCHC24 RANBP1 BSN AP1S2 FAM163B SLC6A17 NNMT GNAQ TRIB2 PPP2CA ALDOA GUK1 DPYSL2 MAP1A HMGCR YWHAH PAM SLC24A2 TSPYL1 PSMD8 RTN3 TSPAN7 CAPNS1 UQCR10 SERF2 MAPRE2 CCDC85B MOBP IDH3A ZBTB20 COX5B SLC22A17 SYT4 SLC38A1 GSTO1 PLD3 UQCRC2 NDUFA4 CYC1 C19ORF43 FAIM2 RPS12 OLFM1 WASL PRR18 ENC1 RTN1 TOX2 SNCB HHATL C1QL2 TOX3 SSBP3 ID2 RPS6 RASGEF1B CA2 CX3CL1 TMCC3 TMEM59L DNAJC5 ALCAM ACTR10 MAG RPRM TMEM88B GOLIM4 KCNAB3 ATP5G2 PGM2L1 PRKCG PTPRZ1 UBA52 CLDN11 WSB2 ATP11C FBXL15 RAB40B CSDE1 SUB1 SLC30A3 ARHGAP29 CDH13 TCEAL7 PNMA2 MPPED1 SELT ACTB PREPL TSPYL4 ARF1 MRPS21 CHL1 TPT1 COX5A SYPL1 CALM3 CTXN1 PSMB5 ATP6V1B2 PTPRM SV2B ATP1B2 PAFAH1B2 ATP6V1C1 PEF1 TMEM230 PRKCB REPS2 DUSP1 ATP5O ATP6AP1 FKBP4 SCD ATP5B ITM2A GLUL MTATP6P1 ADARB2 CKLF UBQLN2 PCBP1 RASGRP1 PVRL1 EIF1AX MT-ATP6 RPL15 CD63 GYG1 TSPYL5 MYBL1 B3GNT1 MTUS1 ALDH5A1 SLC6A1 NCDN VWA1 IGF1 CNRIP1 SUMO2 RPS5 GRIP2 LDB2 MRPL37 MAP1LC3A MAPK1 UBL5 APLP1 MT-ND1 TNFAIP8L3 TAGLN3 MFN2 DKK3 NKX6-2 NKX2-2 TMA7 SNX10 SPOCK2 GPX1 NFIA GAP43 TMEM63A TMEM155 GAD1 POLR2K ATP5G3 LRP1B RPS15 PCDHGA5 PJA2 RORB GSTP1 ACACB S100A1 VAT1L B3GALT2 C11ORF31 RSPO4 ARPC5L NDUFS6 CYFIP2 PKM PFN2 HAPLN4 RPS2 LPPR4 RPL37A SCG2 HK1 WFS1 YWHAZ HMP19 NGFRAP1 KIAA1755 MTRNR2L8 EDN1 GDA MT-CO3 ENO2 SLC25A6 LDHB RAD23B AC244489.1 NUDT4 RNASEK-C17ORF49 PSMB3 RPL13A\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "mixed glial cell" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: PLP1 TF MBP MT-CO3 MT-ND3 MT-ND4 MT-CO2 MT-CO1 RTN3 RAB3B MT-ND1 QKI CLDND1 HSP90AA1 APLP1 MOBP MT-ATP6 MTRNR2L12 TMEM144 RTN4 CLDN11 SCD ATP1B1 MTRNR2L1 ACTB PTGDS GLUL SYTL2 ZNF385D GPRC5B MT-CYB FTL PIP4K2A SPP1 SNAP25 RPS15 OLIG1 MAP1B PTMA GFAP NR1I3 CNDP1 ST18 RPL13 ERBB3 ENO2 PRNP RPL35 RPS27A ABCA8 TSPAN7 PPP3CA SLC1A3 PREPL NFIA ATP5I GPM6A KIF21A GPR37 CALM1 PCDHGA6 PTCHD4 RP11-111M22.2 CSDE1 RAPGEF5 TUBD1 TUBA1A MYRF CREB5 KLHL5 RPL26 ERBB4 TMSB4X CDC42SE2 FAIM2 ATP5C1 APBB1 TPT1 MT-ND2 EDIL3 SYT11 GABARAP RPL21 ELMO1 SUMO2 MT3 RPL38 OPALIN ATP1A2 TMEM63A STMN1 ZNF536 NDRG2 ATP2A2 SLC31A2 CTSD HHIP PSAP TMEM88B SLC1A2 CRYAB DPYSL2 MTRNR2L6 TBC1D15 OR6D1P RPS28 KIF1A NECAB1 CCK DNAJA1 NKX2-2 CKB MAPRE2 DNAJB9 GYG1 MT2A TTYH2 MAP4 GDI1 CPE AP1S2 DLC1 RPL18A MED31 DNAJB6 NDUFA13 EIF1 PGD ALDOA VWA1 EPB41L3 TKT TLE4 SOX10 GRM3 HSPA2 SKP1 SYNPR HHATL MTRNR2L8 OCIAD1 HMGCS1 TMEM59L FTH1 MFSD6 MAP1LC3A MTATP6P1 CLMN ACSS1 RPS5 SYT1 MAG JUND BCL6 CTNNB1 IMMP1L ATP5A1 CLU TUBA1B TSC22D1 AQP4 FAM127A RPL11 PRUNE2 SLC24A2 BEX1 SLC30A3 SEPP1 TXNIP SCN1B SERPINE2 IQCK FAT3 ARF3 MT-ND4L CHMP4B DNER TOMM22 RPL13A ATP5B SPTBN1 TPPP MT-ND5 SLC22A17 GRINA RTN1 CLIC4 ITM2B THY1 EPHB6 CADM2 CALM2 NTNG2 PEBP1 C6ORF1 RPL8 HSPE1 OLFM1 RPL3 CHADL NAPB ATP1A3 PCDHGA5 BIRC5 NDUFA5 SEC61G SLC6A17 PMEPA1 CAPZB JUN S100A1 VDAC2 C14ORF132 CNTN1 MAPRE3 RPL15 COL4A5 SLITRK1 FA2H QDPR SNRPN FOS RAB40B CDH19 SERINC1 NAP1L2 UBE2V2 NIPA1 COX4I1 GPR37L1 NUTF2 ATP6AP2 VAPB RPS6 NKAIN1 PPDPF BEX4 GPR56 HTRA1 MDH2 GABRA5 ITPR2 YWHAG MRPL37 AHNAK XAF1 TMEM141 WBP2 CTBP1 MAP1A VAMP1 RAB6A SYT4 DGKG BSCL2 DOCK10 F3 ADARB2 OPA1 RP11-219A15.1 BEX2 ERH TP53I11 TEFM PLS3 ADAM23 GSK3A INPP5F C14ORF2 PTPRM TSHZ2 CLDN5 ATP5J2 RXRG GRIN2A PPP2R4 TMEM151A SUMO1 NUAK1 RPS19BP1 COBLL1 OLFM2 CALM3 ACTR6 CCT5 C2ORF47 ARHGAP35 NRCAM NDUFB8 FKBP1A CCDC25 PLIN3 ITGB5 RAB11A ATP5G2 TMX4 NACC2 NDUFB3 KCNMB4 ALCAM VAMP5 ZNF365 ZFP36L2 PLIN2 CRISPLD2 TM6SF1 WLS ARL8B RPL39 APOLD1 TRMT112 S1PR5 UBA1 USP5 UBA52 DDAH1 NDFIP2 EIF4A2 TSC22D4 PHPT1 HEPN1 CORO2B CAB39 FAM69C HSP90AB1 MAL TERF2IP MTCH1 PGM2L1 FRMD4B CPNE2 ASPA CD44 STMN2 RP11-597D13.7 C1ORF56 SQLE ATP5G3 NAP1L3 PCDHB4 ARL4C MFN2 PPP1CB MTG1 NPAS3 SSBP3 NKX6-2 PRKCB SLC2A1 ATP6AP1 KRAS CNTROB PNMAL1 KCNK1 OPCML RAB2A CNP PVRL1 RANBP3L PTGES3 MT1X TGOLN2 CD9 POLR3H FKBP8 BNIP3 SPOCK1 HIST1H2AC DCTN1 CARNS1 CNRIP1 RPL37A GAD1 FOXO1 RHOB MORF4L1 MRPL33 PROX1 PDLIM5 TAGLN2 C1ORF95 ARPP19 PTPRS NINJ2 TMEM120A SLC14A1 S100A6 TCEB2 LGI3 RNASE1 TCEAL2 PPP3CB PSENEN ATP5F1 RPS12 TUBB2B NCOA4 COX5B EID1 CSRP1 NAPA ACTG1 ATP6V1F RPS3A AES SLC6A1 APEH HEBP2 IQSEC1 RPL36A MAGED2 SERINC3 CDK17 S100B RELN BCAS2 NEK7 GNB1 LANCL1 PRKACB PJA2 TNNT2 PI16 LRMP UBE2N BCAS1 ARL8A CHN1 GGTLC2 SYN2 NDUFA11 GABRA1 RP11-403P13.1 VCAN C2ORF74 CLTC SARAF TBCA NDUFB7 APP LMO4 PPP3R1 PIK3R1 NRGN AP2B1 SULT4A1 UBE2QL1 HAPLN2 SEPW1 TSPYL4 FAM19A2 CYFIP2 CLPTM1 ETFB ATP6V1E2 TMA7 PTPRZ1 RPL31 PFKP NGFRAP1 TUBB4A TLN2 ZBTB20 MRPS28 COL21A1 FAM111A POLR2L ARF1 COQ10B APOD PCDHA9 EZR PDE1C APLP2 SEPT4 ZBBX ZCCHC24 CTNNA2 CTC-575D19.1 CAMKK2 NDUFB4 CBLN1 TRIM59 AIF1L PCSK5 ENC1 CORO1B LMBRD2 ZMAT2 DYNC1I1 ZFP36L1 MYL6 HOMER1 MAPK1 GJA1 TMSB4XP4 HS6ST3 PAQR8 UBQLN2 RPL41 ATP2B2 ENPP2 SUMO3 CRIM1 DPY19L1 RTKN NUDT21 FAM134A RASGRF1 PAFAH1B2 DKK3 VAMP2 HES1 C10ORF54 ATP6V0B COL9A2 BRINP3 NR2F2 PPAP2B GLO1 PCDH8 PPP2CB SPATA13 NEGR1 RASSF8 CHCHD2 PSMA7 KIFAP3 RPL17-C18ORF32 RPL17 FXYD6 NGRN SERF2 NSF IDS AC244489.1 CYB5R3 PSMC1 ATP6V1G2\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "mixed glial cell" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: HSP90AA1 RAB3B MT-ND3 MT-ND2 PLP1 MT-ND4 SNAP25 ZBTB20 QKI ATP1B1 CNTNAP3 MT2A RP11-219A15.1 DNAJC21 MT-ATP6 GRAMD3 TMEM130 RTN4 DNER HSPB1 MT-ND1 TMSB4X MT-CO2 NFIA PREPL MTRNR2L1 SCD5 SCAMP5 SLC9A9 CADM2 DPP6 STXBP1 KIF1A NEFL TF PPARGC1A RPL13 PLCB1 PIK3R1 SCG2 PPIA ARL4C HMP19 SEPW1 CLDN11 ATP6V1A TMEM70 VAMP2 ZBTB18 PRDX1 POMP SLC38A1 COX6C ALK RPL23A ELAVL2 YWHAG SYNJ1 APOLD1 BCL11B TOX CKB SLC6A1 CAMKK2 LRP4 SYT1 CNTNAP5 ATP1A1 PDE1C PHYHIP MBP ITM2B RPL32 PPP3CA TMCC3 TSPYL1 PPP3R1 FBXO40 ACTB BSCL2 FKBP4 ITGB4 ALDH1L1 APP SNCB FAM189A2 RPL37A TSPAN7 DCN ACOT7 PTGDS ENOPH1 UBB LHFPL3 GLUL SDHAF1 C11ORF84 PEBP1 CALM1 PPP2R1A HOMER3 SPARCL1 OLA1 DOCK10 GPR98 HIST1H2AC ZFP36L2 VPS35 NRF1 ATHL1 ZFP36L1 NACC2 CTDSP1 RPL11 MT1X MIEN1 TMEM132C EVI2A HS3ST3A1 GAPDH SLC19A1 ATP2A2 NFE2L1 MT-CYB CX3CL1 MZT2B NRCAM NUDT4 MT-CO3 COL5A3 SPOCK3 ATP1A2 HMGCR NDRG3 FARSA SYT2 ETFB RP11-597D13.7 PJA2 TMEM144 PRKACB MT1F ATP6V1C1 CAMK2N2 PHLDB2 NSF RPL17-C18ORF32 IDS PGM2L1 C18ORF32 RPL41 PTCHD4 RPL21\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "mixed glial cell" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: PLP1 HSP90AA1 FTL SYTL2 PDGFRB MT2A PLEKHG3 ATP1B1 APLP1 PIEZO2 PTGDS SUMO2 PSAP VCAN SYT1 TUBA1A RPL7 KCNJ10 SLC1A3 TMSB4X MBP DYNLL1 SLC1A2 TLE4 SARAF CALM1 FAIM2 GPRC5B SOX11 RPL12 CDC42SE2 ANXA6 DDR2 TLR4 SLC24A2 RPL13A DMKN CRYAB FKBP4 NCAM2 PLD3 MT3 BLNK PGRMC1 STXBP1 C14ORF132 PSENEN CREB5 PTN GLRA3 JUND MYO1B ARL8A GRIN2A PCMT1 MAGEH1 PTPRZ1 MT-ND2 RHBDD2 MRPS21 DGUOK SPP1 PFN1 RPL38 ATP6V0E2 GAPDH MAPK1 CERS6 GPX1 AP2M1 GHITM ATOH8 PCDHGA6 RAPGEF5 PRNP KCNA1 SEPT4 TKT CBX6 ATP2A2 PAX6 PPP3CB PRUNE2 IDI1 RPL39 RPL37A MYO10 COX6C MAP7D1 MYEOV2 NDUFA5 RPL13 PTMA RTN4 NOTCH1 RPS6 MOBP MT1F NDUFA12 SPOCK3 YBEY RPL31 ATP6AP2 SLC22A17 MTCH1 HSP90AB1 ATP5G2 HDDC2 MEGF10 TUBB2B RPL26 MORN2 PPP1CB APOD MT-CO3 SERF2 CABP1 HINT1 ATP5O NCKAP5 NKX6-2 TMEM130 NDRG2 TUBA1B PEG10 MIEN1 HTRA1 DPYSL2 MT-ND3 RPL32 MT1G CADM2 SRD5A1 RPS27A SLC25A5 KLC1 SHC4 NSF PDP1 QKI RTN3 PPP3CA CLU TMEM230 ATP5E TCEB2 LINC00116 ALDOC CAPZB PARM1 PEBP1 DNAJC6 MT-CO2 TPI1 RPL15 YWHAG GNAQ PSMC1 NDUFS6 S100A1 MYBPC1 CCK SELENBP1 MYRF REEP5 NDUFA11 RPS15 TRIM59 MT-ND1 IDS MTND1P23 B2M RPL36A RPL23A RPL21 TBC1D15 DNAJC21 RAB3B\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "mixed glial cell" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: PLP1 MT-CO1 MT-ND4 MT-CO2 MT-ND3 MT-CO3 TF MT-ND2 APLP1 MTRNR2L12 SPP1 RAB3B ATP1B1 MTRNR2L1 MT-CYB QKI TBC1D15 SLC24A2 CALM1 ERBB3 PSAP TXNIP MBP PTGDS RPS28 NR1I3 HSP90AA1 ZBTB20 FTH1 MOBP PEBP1 MT-ND1 SCD MT-ATP6 RTN3 DPF3 GFAP PREPL TUBA1A EDIL3 SLC1A2 SLC1A3 CLDND1 CALM2 SCD5 MT-ND5 GPRC5B RPL17-C18ORF32 SYT1 SNAP25 GLUL TLE4 RPL31 ELMO1 HSPA2 RPL37A SPOCK1 PTMA SYT11 HSP90AB1 HEPACAM RPS6 WIPF1 RTN4 DNM3 ACTB CPE PAQR8 MAPRE2 MTRNR2L8 CTNNA3 ENO2 PDE1C TMEM144 CTC-575D19.1 HHATL PEX5L NECAB1 CNP CRYAB MTUS1 HHIP BIRC5 UBC FTL PKM APBB1 KIT DKK3 PJA2 PSD3 TUBB4A ZFHX4 RPS27A RPL35 CLU PTPRZ1 RPL32 MEGF10 SSBP3 CCK APLP2 SNRPN IFITM3 TMSB4X PIP4K2A EIF1 GNAQ APOD RGS12 NAT8L RPS15 CADM2 ARL6IP1 TMEM63A DNAJB6 SELT NDRG2 THSD7A RPL13A OLIG2 OCIAD1 RPS12 GAPDH OAZ1 AK5 BNIP3 DPYSL2 CLDN11 APOLD1 DNAJC6 TTYH2 RNASEK-C17ORF49 TALDO1 PRKACB ATP1A3 ADARB2 ATP6V0E2 CKB CFH SERINC3 NFIA SLC31A2 ID4 PIEZO2 ELAVL4 HAPLN2 DOCK10 RASGRF1 MAP2K4 EIF4A2 RPL23A GPR37L1 PPA1 CA2 ATP5O PROX1 OLFM1 RAB6A CREB5 MT-ND4L PRNP EFR3A ZFP36L2 ENC1 RPL21 LMO4 VAMP2 PPP3CA GRIN2A TCEA2 HS6ST3 TOLLIP MAL GPIHBP1 ITM2B ASPA CHN1 AQP4 EIF4G2 SPARC COX8A DCLK1 METTL7A CCDC69 DYNLL1 CLMN SEMA3B EID1 APP MAG SCN1A CHCHD2 SEZ6L2 HTRA1 TPPP RANBP1 RNF11 PPP3R1 CD99L2 UQCR11 RTN1 ERBB4 C19ORF70 MLF2 FOLH1 TOMM7 COL4A5 CARNS1 SCOC AZGP1 SAMM50 TPT1 ANKRD18A MAP1B TRIM59 CTSD ALDOC FIGN YWHAB RP11-111M22.2 TUBD1 KLC1 RPL6 S100B ACACB VDAC2 AP2B1 TUBA1B RPL17P50 MT1X TGOLN2 HDAC1 SEPP1 MRPL55 ATP6V0B ATP6V1G1 NPAS3 MT3 MYRF JUND SQLE QDPR ST18 MAF NIPA1 TOMM20 ZNF385D MIR6723 TEFM NAP1L3 C10ORF54 TIMP2 SLC6A1 NFE2L1 DPP6 SYNGR3 NAPB RPS26 BSG INSIG1 S100A13 PLD3 SYN2 HS3ST4 BCAT1 CNTROB FAIM2 SCG2 LAMA2 RPH3A PHB EDF1 FOXO1 IGFBP5 SLC25A6 CA11 RPL38 RHEB TLN2 CD24 CRKL TMEM147 REEP5 MDH2 DNER PGK1 C16ORF13 RTKN PRTG CBX6 THBS4 CRISPLD2 CST3 LATS2 SLC12A5 SYNPR THBS2 SYT4 PTN AP2M1 PARP14 GNG5 PDP1 ATP6V0D1 CYP2J2 PDK4 LAMTOR5 TPD52 MTG1 SUMO2 BMPR1B UQCRB NRAS SMIM3 HIST1H2AC PSMC5 PCDHGA5 PRPH2 UBL5 NACC2 PFKFB4 ARL6IP5 CD63 SPTBN1 PPP1R14A NTNG1 ATP6AP2 RPL18A PNMAL2 RAPGEF5 CPLX1 CLIP3 MTATP6P1 CTBP1 NDUFAF2 HMGCR OXR1 EDN1 PEA15 SCN1B DIRAS1 SMIM12 TANC1 ATP1A1 KCNAB2 ANLN GOLIM4 MAGED1 KIAA1211 COL6A1 RGCC NDUFA11 PTGES3 KAL1 GADD45GIP1 NKX6-2 EIF1AX OAT PI16 NDUFS6 CNDP1 FAT3 CAPZB SERP2 NPTX2 ASCL1 FAM131B ITGB4 TMEM150C CSRP2 SNAP91 CRYZ NCEH1 CRIM1 PPP2CB CALN1 ITGA6 NR2F2 PHF11 EPS15 GHITM UBE2N YWHAG GPM6A ZFAND5 AP2S1 PRKCB PGM2L1 IDH3A VCAN ATP2B2 TMTC4 ZNF880 NDUFB4 SPOCK3 RAB6B SLC24A3 FRMD4B SPARCL1 KIF5A REPS2 IGF1 TSPYL4 LIMK1 TMEM59L HEPH SLC22A17 CRHBP HSPA4 C14ORF132 HPRT1 CDK5R1 RPS5 CDC42SE2 CNRIP1 THY1 LAGE3 PCBP1 AGT NDUFA4 NCOA4 RPL26 RHOA CCT5 TMSB10 PRDM8 RANBP3L MRPL52 S1PR1 KIAA1024 PRDX1 TMOD2 CPLX2 ZBBX RAB1A PTCHD4 PAX6 NUDT21 STMN2 ARHGDIA KLHDC3 HILPDA UBE2F LRRC69 IMMP1L FAM107B MPP1 NINJ2 DSTN COPS7A CMTM5 ONECUT2 FIBIN GORASP2 PNKD IFI16 ATP6V1E1 WFS1 SIRPA NREP PPP2R1A MFGE8 DGUOK GPR37 STMN1 SLC17A6 SEPW1 KCNJ10 SELM MTRNR2L6 MT2A CA9 RAB4A MAPRE3 GAP43 ARF1 HSPA8 TUBB2B TMX4 ADAMTS1 GPR158 PTPRS MARCKSL1 RABAC1 TM2D3 PTHLH TMEM88B TNS1 TSC22D4 RAB3C CLPTM1 SCAMP5 SPX SPOCK2 ATP5C1 HMP19 TMEM255A HEPN1 POLR2M TSC22D1 RAB3IP COX7A1 BTNL9 NFATC2 SNX10 TMEM123 PON2 WBP2 RPL41 RLIM SARAF NUAK1 HFM1 BAI2 PADI2 EVI2A HDLBP CLTA ATP6AP1 CYBRD1 NCKAP5 PTPRN2 SEC61G MAP2K1 RPS4X DYNLT3 ATP5G1 C1ORF52 ANXA6 LDOC1L RPL15 FIS1 TMA7 NSF FAM69C CNTN1 ATP2B4 CHADL JUNB RPL39 RXRG GSTT1 PTPRT SNX17 CD9 NCAM2 S100A6 LCNL1 ARF3 MAPK1 CTNNB1 DCTN1 FGFR3 MARCKS GPX4 LL0XNC01-16G2.1 NDN RPS3A ZNF385A DISC1 CLSTN1 BEX1 NDUFC2 NGFRAP1 GDI1 KCNA1 SYNPO DCN SHC4 SOD1 SEPT4 ANGPTL4 C10ORF90 PRUNE2 ZFP36L1 RASGRF2 MORF4L1 RRAGA MRPL20 CDR2L COL9A2 FAM198B CX3CL1 GALNT12 LMBRD2 RAB40B RPL3 MYEOV2 MAOB LANCL1 RPL8 RAB34 ATOX1 SERINC1 RP11-597D13.7 ATP5G2 SOX2 ITFG1 FSCN1 IDI1 ABCA8 PPDPF VWA1 ATP5J CCDC115 CPLX3 TMEM11 BAG4 OPA1 CFL1 GGTLC2 C1S ENO1 TMEM35 MIF ARF5 B2M ZNF365 LDHB RPL36A GABARAP FAM134A AC244489.1\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "mixed glial cell" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: SLC1A2 NDRG2 GPR98 MT-ND3 CLU MT-CO2 SLC1A3 NFIA PTN SLC14A1 RORB RAB3B QKI HSP90AA1 GPRC5B MT-ND4 STON2 SPP1 DPYSL2 MT-CO3 TMEM144 SYTL2 ETNPPL TF TUBD1 GDI1 PPM1A TMEM65 GPM6A HOMER3 ATP1A1 SARAF MAP1A DNM3 SUMO3 MBP ATP1B1 RABAC1 ETV1 BEND5 CCL2 OCIAD1 ETFB AIF1L RAB3IP COL5A3 IFITM3 PLD3 CADM2 SLC9A9 SRP14 NAPB SLC39A12 ZBTB20 TMPRSS3 RPL31 MT-ND2 BCL6 MT-ND4L AEBP1 DNAJB9 SLC9A6 JUNB LRP1B PEA15 HEPN1 ERBB4 TANC1 FIGN SUCLA2 ITM2C MTRNR2L1 MAPRE2 FOS GJA1 HNRNPA1P40 CTSD CLMN PLIN2 RTN1 RAPGEF5 CARNS1 UQCRC2 MT-CO1 MARCKSL1 HIF3A TTYH2 MUM1L1 THY1 ACTG1 EPS15 DNAJB6 GRAMD3 AGT PREX2 ASAP1 MAP1B ATP1B2 NDUFAF2 ARL6IP5 TALDO1 C1S ZNF703 CDK14 GFAP CLSTN1 TXNIP MTUS1 HSP90AB1 F3 SLC35B1 MEGF10 FRMD4B S100A1 RPL41 HEPH NPM1P30 CFL2 RPS6 MT3 CYCS NACC2 ITM2B PAPLN SERPINI2 PLP1 CLDND1 MGST3 EDIL3 TMEM150C DGKG HEPACAM RPL21 RPL36A AC244489.1 CYB5R3\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "mixed glial cell" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: PLP1 ZBTB20 MBP TBC1D15 MTRNR2L12 SEPP1 MT-ND2 SLC1A3 TXNIP CLU TF RAB3B MT-ND4 RTN4 MT-CO3 NFIA MT3 SEPT4 MAP1B MT-CO1 PTGDS CLDND1 PEBP1 MT-CO2 CLMN PIP4K2A CLDN11 APOD CALM1 TMSB4X FTH1 HSP90AA1 RP11-219A15.1 ESCO2 UBE2N THBS2 APLP1 RPL21 SOX2 GPRC5B PTGES3 LGI3 EIF1 MT-CYB GPR37L1 MT-ND3 MT-ATP6 MTRNR2L1 PIEZO2 GPR37 MT-ND5 RPS28 SALL1 PPP1R14A PEX5L ZCCHC24 PTMA TMEM144 SPCS2 HNRNPA1P40 BCAS1 SKP1 RP11-111M22.2 CNP HOMER3 FOLH1 DKK3 ARL6IP1 NDUFB1 ATP1A1 NAPB PCDHGA5 PPP1R9B ATRN THYN1 ISOC1 GAPDH NDUFB10 MAST3 ATHL1 ANGPTL4 NDUFB4 FABP5 SPOCK3 CPE COX5B CAMK2G PCDH17 SEMA3B SLC39A10 RAP2A TMEM88B DYNLL1 MT1X TKT TOX3 PRNP CD44 CDH19 ATP5J DLD NDUFS6 TENM3 GRAMD3 QDPR SLCO1C1 BRK1 ARFGAP2 UQCR11 BEX2 PTPRZ1 RTN3 ATP1B1 ENO2 MFN2 FRMD4B TOMM20 ST18 UHMK1 DGUOK CAPNS1 SCN1B PHB YWHAQ YWHAB HSPA2 NDRG2 SLC31A2 RAD23B TBCA YWHAH PCBP1 NDUFB2 MRPL47 ATP6V0C CTNNB1 HCN2 S100A13 RASL12 AC244489.1 HEPACAM SQLE CREB5 TMEM63A PPAP2B SLC14A1 FOXO1 FAM107B EMX2 SRP14 GPIHBP1 GPR98 PRKACB RP11-597D13.7 VWA1 ADARB2 CALM2 RPS12 RPL38 WIPF1 RASSF8 PITPNA APOE ALDH1L1 FAM96B SUMO3 MRPL55 RPS19BP1 SPARCL1 C1S A2M TLE4 TSC22D4 NDUFA5 RAB40B AHNAK AQP4 HSPE1 SERPINE2 NECAB1 PLEKHG3 ETNPPL ACTB SHC4 ATP5I ATP5B FTL RP11-20I23.1 FSCN1 COBLL1 EIF4A2 MT-ND4L CYP27A1 OLIG1 PRKAR1B CDH8 PSAP ELMO1 DNAJC6 KLC1 NKX2-2 TCEA2 RAB4A CLTA DNER GLUL PAQR8 MAG SYT11 GOLIM4 KLHL5 MAL SCD RPL41 EDIL3 MYL6 MT1E LIMK1 COX4I1 ATP6V0B HINT1 PREPL YWHAG NGFRAP1 MOBP VAMP2 ASPA ACTG1 MAP1A PHKG1 IDS MTRNR2L6 BSCL2 RNASEK-C17ORF49 ALDOA\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "mixed glial cell" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: PLP1 MT-CO2 TF MT-ATP6 MT-ND3 SLC1A3 MBP ATP1B1 RPL11 APLP1 FTL SPP1 PEBP1 MT2A ZBTB20 SERF2 HNRNPA1P40 REEP5 HSP90AB1 TIMP2 PIK3R1 FAIM2 GAPDH PTGDS CREB5 S100A6 UBB RBX1 MT-CYB SPARCL1 ATP5I MT1E APP MT-ND4 VCAN RPL37A QKI PPP3CA ITM2C PTGES3 SEPW1 HSPE1 THEMIS2 PRKACB HSP90AA1 RPL15 MOBP TMEM144 TBC1D15 DNAJC21 NDUFA13 RPL6 RP11-219A15.1 COX6C MRPL51 LMBRD2 GNAQ ARPP19 WSCD1 STRAP SEC61G VAMP2 C1QB TMOD2 MTCH1 SCG2 RPL39 MACROD1 RPS27A HTR2A KIF5A C14ORF2 LRP1B MAP2K4 RPL7 PEG10 SOX2 CD9 DAW1 NCDN PTPRZ1 PFKP TMSB10 SLC22A17 PFDN1 MTRNR2L12 SUB1 CALM2 PSAP SYNPR ENO1 H2AFZ DYNLL1 MRVI1 RAB3A DGKG RPS5 SUMO2 CBX6 PRDX5 TUBA1A MT3 HSPA2 SCD GABARAPL2 NFIA SLC35B1 DYNLRB1 CPNE4 MT-ND2 STMN2 RPL23A HS6ST3 NDRG2 GSTT1 COX17 IGFBP5 CLDN11 EIF1AX PADI2 SEPP1 GUCY1A3 RP11-154D6.2 PTMA ARPC5L SLC6A12 GSTO1 MRPL52 RPL12 KCNJ10 SIRPA HHIP SSBP3 TMSB4X EDNRB RPL26 RPL10A CRYAB NEUROD1 GPR98 EFNB1 EPS8 TXNDC17 S100A1 GPR56 CLMN ERBB3 CHL1 RIT2 NDFIP2 ATP6V0B HLA-DQB1 MAPRE2 WARS HSPA4 SHARPIN PDGFRB CD63 OAZ1 EVI2A TLE4 CHIT1 GABRA5 SARAF OST4 CDH13 MYO10 CTBP1 MTRNR2L8 ASAP1 RTN3 DPYSL2 CYC1 CLU PRNP ACTB PRUNE2 RANBP3L TGOLN2 PRKCB CKB OLIG1 NACC2 COPE FGFR3 NHP2L1 GRM3 LRRC69 IQSEC1 RPL13A NDUFAF3 CADM3 COX7C ISCU SYTL2 ZNF385D RAB3B ARFGAP2 RPL17 MTND1P23 CFH RPL17-C18ORF32 MT-ND1 IDS ATP5O ATP6V0C GABARAP RP11-20I23.1 TRIM59 RPL41 RPS2 RPL18A ATP6V1G2 RPS3A\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "mixed glial cell" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: PLP1 MT-ND2 MT-ND3 TBC1D15 FTL MT-ATP6 CLU SPP1 HSP90AA1 MOBP CRYAB MT-CO2 PPP3CA TF ATP1B1 RPL38 TOMM7 RTN4 CLDND1 SLC1A3 APLP1 MBP TMSB4X UQCRB ZCCHC24 DKK3 SERF2 NDUFC2 ATP5E HHIP HSPA8 RPS4X CA2 DYNLL1 CTNND2 SPARCL1 HMGCR SH3BGRL3 SRR STOX1 DNAJA1 SH3RF1 RPL26 SLC35B1 ITFG1 SDHAF1 RGCC ERBB3 STMN1 ATP5F1 EIF1AX SLC38A1 TMEM63A NDUFB4 SRP14 ATP5J SLC1A2 CSRP1 ATP5I ATP6V1E1 GSTO1 NAP1L2 GPR37 TUBA1B PRNP PREPL VDAC1 HSPE1 CAMK2G CFL1 ACTG1 SLC19A1 PLIN3 RPL37A YWHAZ NDUFB7 CAB39 CRKL ZFHX4 CALM2 RPL8 PCSK5 NDUFB8 AURKAIP1 TUBA1A SPARC ENPP2 CYB5R3 MAG NRIP3 SYT1 TUBB4A POMP MRPS21 PRDM8 RPL35 CIAPIN1 MTUS1 MT-CO1 CST3 PDCD5 GABARAPL2 GJA1 PNKD MAP1A RPL23A OAZ1 CCDC115 SOX2 SEC61G JOSD2 PPP2R2B DPYSL2 DPP6 PRDX1 QDPR SPOCK2 UQCR11 NDUFA4L2 KCNC2 PTMA COX8A ATP2B4 HTRA1 MGST3 REEP5 RPL10A MYEOV2 PRR18 NKX6-2 BEX1 GPR37L1 MAP1B GPRC5B AQP4 PRUNE2 VAMP2 TALDO1 NTN4 C19ORF43 PDGFRB PPP2CB MT2A EDIL3 MYL6B UBB ARL8A KLC1 B2M ZNF385D SYTL2 ESCO2 RAB3B RPL18A RPL13A RP11-219A15.1 PCDHGA6 PTCHD4\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "mixed glial cell" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: ZBTB20 MBP PSAP MT-CO2 TF MT-ND4 CLDN11 CA2 NRF1 DPF3 ATP1A3 KLC1 SLC1A3 HEPACAM MT1E OR6D1P MT2A SLC1A2 ACACB MT-ND1 LCNL1 CKB BMPR1B GPM6A RTN4 ATP1B2 MAL TCEA2 TIMP2 DNAJC6 PIEZO2 AQP4 CALM2 SLC9A3R1 EPS8 SCD TCEB1 ALKBH7 DSTN PEX5L ATP5F1 PPP1R14A CPE IQSEC1 ENPP2 DDAH1 NKX6-2 HSP90AA1 ITM2B ROBO3 CDC37 ITM2C ITGB5 SDC4 ARL6IP1 ETFB UQCRC2 ATP2B4 ALDOC CNTN1 MEGF10 C12ORF57 DPYSL2 PPP2CB PAPLN PLTP PTN RPS28 KLHDC3 PAQR8 SPOCK3 RPL8 SLC31A2 PHYHIPL APOD NHP2 VAMP2 RPL37A TALDO1 METTL7A DIO2 MT1F ATP6V1B2 PTGDS PJA2 HSPA2 MRPS7 MT3 SLC24A2 CLMN WBP2 PRUNE2 SNAP25 PBXIP1 MT-ND2 PTPRZ1 ARL8A MGST3 CAMK2D PRKAR1A PRDX2 KAL1 WFS1 MGST1 MYRF RAB4A MIR6723 RP11-219A15.1 MT-CO1 PPP3R1 IDS AC244489.1\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "mixed glial cell" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: SLC1A2 PLP1 SLC1A3 MT2A CLU PTGDS GFAP NAT8L MT-CO1 ZBTB20 VEGFA NFIA QKI BCL6 IGFBP7 PAPLN ACSS1 MBP ZNF385D RAB3B SYTL2 TMEM144 FTL UQCR11 HIST1H2AC RPS28 RPL31 PTPRZ1 WLS CKB FAM43B ARL8A RPL36A RPL37A SYT11 DPP6 GPR98 NPAS3 CYCS GRINA RHOB SCD5 ZCCHC24 CREB5 TMEM258 GLUL RP11-111M22.2 PPAP2B TPPP NDP ENSA DKK3 HSPA2 ATP1A2 NPM1P30 MRPS21 TMEM59L ZFP36L2 GJA1 SERPINA3 CRYAB ENO1 SPON1 KAL1 PRNP TBCB MLC1 PHYHIPL MOBP CLDN11 CAMK2G EID1 PSAP SLCO1C1 ATP5I YAF2 RP1-228P16.1 CLDND1 USMG5 CPE HHATL ATP2B4 ALCAM TUBA1A COL5A3 METTL7A MT1E TSPYL4 DNAJC5 TMEM230 NAP1L3 CD59 FAM189A2 C12ORF49 AQP4 ACTG1 HSP90AA1 SLC14A1 MT-CO2 SPARCL1 APOE BLVRB GABRG1 ARL6IP5 RAMP1 ITPR2 EIF1 SLC6A1 FRMD4B RTN4 OLFM2 ITM2B EDIL3 ETV1 RNA5-8SP6 PAQR8 SPATA13 FTH1 PGM2L1 ATP6V0C RPL6 RP11-20I23.1 RP11-219A15.1 GTF2H2C_2 PCDHA10 PCDHAC1 PCDHA9 PCDHA4 DNAJC21 TBC1D15\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "mixed glial cell" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: PLP1 GPRC5B FTH1 PTGDS CALM2 MBP TF CNP FTL TCEB2 SCD EDIL3 PEBP1 OAT OCIAD1 STMN2 RTKN MTRNR2L12 RPL13 ERBB3 SOD1 DPYSL2 RGCC ITM2B TMEM144 MOBP RPS15 PIP4K2A OPALIN RPL38 THYN1 MARCKSL1 SEPT4 RTN4 CLDND1 ZNF365 SEC61G PHYHIP ZCCHC24 LAGE3 RPL37A ELMO1 METTL7A GPR37L1 MT-CO3 CD59 GNAQ ATP5I TSC22D4 RPL15 CADM2 APP ABHD14A UCHL1 PRKCE SPARCL1 PPDPF RAB1A CTSD STMN4 GAPDH COX7C RPL10A SPOCK3 SLC25A6 SYT11 GPCPD1 NELL1 KCNJ10 ATXN10 CREB5 MGST1 MT-ND2 FAM127A DNAJB6 MT2A COX14 GPR37 AGA KIF19 STK39 SYPL1 TOMM20 RPS12 VWA1 SEPP1 ELAVL2 ARF1 MTRNR2L8 QDPR HSPBP1 MAPK1 COMMD6 MDH2 ZNF536 CDC37 HHATL RHOB JUND PPP2R2B COX4I1 EIF4A2 NFIA OLIG1 RPL11 PSAP COL9A3 CFL2 UBE2V2 ALKBH7 CISD1 PSD3 SNAP25 PRKACB MAL ABCA8 ANGPTL2 FA2H RAB40B PPP3CB PCMT1 C19ORF70 ZBTB39 ZIC4 DNM3 CARNS1 MAGEH1 EPS8 POLR2I C14ORF2 MAP1LC3B MT-CO1 UBL5 PGM2L1 RTN3 BLVRB TMEM151A NDUFS5 CLIC4 TSPYL1 PRELID1 QKI LCNL1 ACTG1 YWHAZ ATP6V1B2 NARS ENPP2 TPPP ATP1B1 TXNIP PDE1A SLC6A1 SEZ6L2 MACROD1 UBA1 ASPA RAB11A BAD KIF1A CLDN11 PPP1R14A NSF NGRN CFH GTF2H2C_2 ZNF385D RAB3B SYTL2\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "oligodendrocyte A" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MBP TF PLP1 SYTL2 MOBP TKT QKI HSP90AB1 CALM1 RPL21 CARNS1 TMEM144 SLC24A2 PPP1R14A FTH1 ANLN TBC1D15 ATP6V0E2 TCEB1 MFSD6 SNRPN ATP6AP2 SNAP25 STMN1 SCD ZCCHC24 NGFRAP1 OXR1 PTGES3 DNAJC6 PKM UQCRQ CHGB HHATL GDI1 MRPL20 MORF4L1 CTC-575D19.1 GAPDH CNDP1 RAPGEF5 ALCAM MAPK1 ALS2CR11 FAM107B TMA7 RPL13A ZNF208 RPL11 RPL23A ATOX1 CREB5 DRAP1 RPL35 BRK1 RPS3A CYP2J2 TPPP TUBB4A TPT1 RP11-111M22.2 MAP2K4 BANF1 ZBTB20 WIPF1 HTRA1 S100B ATP5E ARPP19 SPP1 MT-ND3 PIEZO2 PIK3R1 PTGDS HPN PPIA PAQR8 RP11-597D13.7 RPS19BP1 RPS15 CLTC GPX4 QDPR OXCT1 BCAS1 PTMA MTUS1 RHOB PSMD8 UQCRB TCEB2 CDC37 MARCKSL1 AZGP1 RPS6 UBC CRYAB HHIP DLD SERINC1 COX6B1 CLMN GLO1 UQCRC2 RP11-404G16.2 RELN IDS NR1I3 ARFGAP2\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "oligodendrocyte A" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: PLP1 MBP APLP1 PPP1R14A TBC1D15 TF ERBB3 SEPP1 MOBP HHATL NGFRAP1 TMEM144 SEMA3B AIF1L DPYSL2 CLDND1 PIEZO1 PCDH17 AGT YWHAG PPDPF QKI NDUFB11 RPL18A RPL13 CAB39 FA2H GPIHBP1 COL9A3 ZCCHC24 CKB PAFAH1B2 TMOD2 CNP RTN4 PRKACB CALM2 ETFB UQCRC1 PPIA NDUFB2 CLTC MT-ATP6 MT-CYB RAP1GDS1 SLC24A2 TSC22D4 LMBRD2 ERMN TMEM235 NDUFS6 PEBP1 GAPDH ELMO1 PTGDS RPL36A CDC42SE2 CHCHD2 SOD1 CTNND2 SCD5 RPS2 NCAM2 PEA15 C12ORF57 LINC01296 ZBTB20 MTG1 NFIA TXN NDUFS5 LRP4 MSMO1 NDUFB10 FAM131B MTUS1 LCNL1 ITM2A CAPNS1 FRMD4B CARNS1 YWHAQ MAPRE2 RAB40B TPPP GNB1 TPRG1L CORO2B APP ASAP2 S100A1 SCAMP5 CTSD DNAJC21 BIRC5 IDS MTND2P28 RAB3B SYTL2 MT-ND2 CFH CYB5R3 NR1I3 ZNF385D\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "oligodendrocyte A" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: PLP1 TF MBP CRYAB ANKRD18A TMEM144 ACTB SYTL2 PLEKHD1 RAB3B RTN4 ENPP2 MT-ATP6 MT3 HEPN1 PTGDS SEPP1 TUBA1A ZBTB20 MT-CYB NCKAP5 C14ORF2 PI16 SEPW1 CLDND1 RPL32 FMO5 S100B AP2S1 PEX5L STMN1 PIP4K2A PRDX1 REEP5 MT-ND4 EID1 ERBB3 PRTG NDUFA1 ATP6V1A RPL15 PEBP1 NAPB CP ROBO3 SPP1 NDUFS6 FOLH1 MRFAP1 DHCR24 CLDN11 CAPZB FIS1 MLLT11 PPP2R2C SRP14 PPP2R2B ASAP1 COX17 RPS2 DPYSL2 RPL37A MAP1LC3B MOBP NAA38 WBP2 NFIA ZNF208 UBL5 RPL11 RPL35 SNX22 HS3ST5 MAP1B MGST3 ST6GALNAC3 LDOC1 SRM APLP2 ANLN RPS6 ELOVL7 CST3 PTMA PGAM1 OCIAD1 TLE4 SEPT4 RAB3IP PPP1R14A PDGFRB SLC24A2 FAM131B TMSB4X CTC-575D19.1 UBE2F ATP1B1 ETFB CALM2 POLR2I PPP2CB GMFB BLOC1S1 FRMD4B FTH1 MYEOV2 PDE1C ENO1 FSTL5 LGI3 ARPC5L AP3S1 AIF1L MAG MT-ND1 FTL MARCKSL1 NUAK1 MSMO1 TSPYL4 ALCAM TBCA ATP6V0D1 GABARAP SLC1A2 THY1 GTF2H2C_2 RPL13A GPR98\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "oligodendrocyte A" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: PLP1 MBP TMSB4X TF MT-ND1 QKI GPRC5B PTGDS CLDND1 CSDE1 RAB40B SPOCK1 MOBP FTL MT-ND4 PSAP LANCL1 MTRNR2L12 ARPC4 RPL37A MTRNR2L1 ZBTB20 SPP1 CCDC152 ARFGAP2 ABCA8 REPS2 MYRF PLEKHG3 GABARAP FOXO1 DNER PTMA NDFIP2 ZFP36 HSP90AA1 JUND RAPGEF5 EIF1 GPIHBP1 FTH1 ENPP2 CKB EDIL3 RPS27A RAB11A ATP2A2 SERINC1 VAMP2 IL10RA CRYAB CYB5R3 METTL7A BCAS1 SEPT4 APOLD1 TMEM63A COA4 MAL ERBB3 TGOLN2 RP11-597D13.7 SLC25A4 DNM3 EVI2A NDUFA5 MT-CO1 PRKACB ASAP1 SIPA1 MT-ND3 RPS4X RPL35 SYT11 PEBP1 PPP5D1 LAMTOR1 IL4R ARL8A SLC24A2 ATXN10 POMP ATP11C NCDN TBCA FRMD4B MYBPHL KLHL5 EPB41L3 HHATL MT-CO3 TMEM88B TPRG1L LRP4 NFIA PSMA7 PPDPF PIP4K2A NECAB1 PPP2R2C DPYSL2 MTG1 MT-ATP6 OCIAD1 RHOA RTN1 TMEM144 MTRNR2L6 RPL21 TRIM59 RPL41 RP11-219A15.1 SERPINE2 NR1I3 GTF2H2C_2 SYTL2 RAB3B\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "oligodendrocyte A" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: PLP1 MT-CO1 MT-ND1 MT-CO2 MT-ATP6 MT-ND4 PTMA MT-CYB MT-ND2 TSC22D4 MT-CO3 SPP1 TF SCD MT-ND3 ERBB3 RAPGEF5 ZNF385D RP11-597D13.7 APOD S100A1 CTSD CDC42SE2 PTGDS PHPT1 APLP1 RTN4 MBP CRYAB DNAJC6 MORF4L2 TMEM144 MTRNR2L1 SLC1A3 CARNS1 CLDND1 DPYSL2 SYT11 PREPL CALM2 CLSTN1 KIAA1755 MT2A CADM2 CALM1 NFIA LRP4 METTL23 RPL37A MTCH1 TPPP MRPL51 SPOCK1 LAMA2 ALCAM PET100 MTRNR2L8 ITM2B RAB7A ETFB TIMP2 ACTB MAP2K2 SLC9A6 SERF2 PITPNA MYRF NKX6-2 MLF2 NUTF2 NDRG3 NDRG2 CLIC4 FIS1 MTRNR2L12 RPL35 UBC TTYH2 CHN1 RPS15 FTL PRUNE2 NR1I3 PPP1R7 DYNLL1 TMSB4X OAT CDH8 TXNIP PRNP OPALIN POLR2L ZCCHC24 CHP1 RTN3 GLO1 COX6B1 SOX2 KIF3C GDE1 ATP6V1B2 MAG PPP3CA NDUFV1 CNP CLMN ITM2A GABARAPL2 CKB SEPP1 GPRC5B MRPL55 RPS27A UQCRC1 ZBTB20 PRKACB PDK4 NKIRAS1 TUBA1A DOCK10 LANCL1 HEPACAM GAPDH COX6C CBX6 PEX5L CXXC4 SUB1 HMGCS1 TBCB RP11-219A15.1 GABARAP CFH TBC1D15 DNAJC21 RPL13A MIF\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "oligodendrocyte A" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: PLP1 MBP TF SEPP1 MOBP CLDND1 HSP90AA1 HSP90AB1 PRNP ARPP19 DHCR24 CTSD TXNIP MT-ND2 CRYAB TMEM63A ACTB NFIA QKI RP11-219A15.1 TLE4 CTC-575D19.1 RAP2A APOD PTMA CLDN11 S100B CA2 PPP1R14A COX6C ATP2A2 SNCA ASAP2 PCDHA4 SLC25A4 CMTM5 ERBB3 PPDPF MEGF10 FTH1 QDPR ARHGDIA VAMP2 GNB1 SYT11 GRM3 RTKN TOLLIP PLIN3 DPP6 RPS15 STMN4 TOMM20 RPS28 MRPS21 PAQR8 GPRC5B C19ORF70 ATP5I CPLX3 FUNDC1 CTNNA3 MT-ND3 GNAQ SEMA5A MAP1A BIRC5 ZBTB20 SLC24A2 COX4I1 PIEZO2 UBC CKB RPL35 SEZ6L2 HSPA2 NOTCH1 MT-ND4 UBA52 SCD TUBB4A TSPO AK5 ZCCHC24 SGCD PEBP1 GHITM TMEM144 RP11-111M22.2 TSC22D4 TMSB10 HHATL ALCAM FAM127A PTGDS SPTBN1 S1PR5 GUK1 FAM96B UBQLN2 MTUS1 RPL13 RNASE1 RAB40B TUBA1A GPIHBP1 GAPDH PHB UHMK1 MT-CO2 RAB4A ACTG1 NEK7 RAB3B SYTL2 ZNF385D\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "oligodendrocyte A" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MBP PLP1 MOBP MT-CO1 RTN4 TF CNDP1 TMEM144 MT-ND4 MT-CO3 GPRC5B ATP1B1 CLU CLDN11 PSAP LGI3 PTN CLDND1 CTSD DPYSL2 MT-CO2 ARL6IP5 TBC1D15 CALM2 CRYAB TUBA1A ZCCHC24 SPP1 BIRC5 RAB3B BCAS1 SQLE PI4KA PRNP ATP6V1E1 EPS8 NFE2L1 TKT NDUFV1 OLIG2 STK39 PIP4K2A TMEM63A MTCH1 ITM2B PROX1 ATP6V0E2 MAGEH1 PPP2CB SPOCK3 PHYHIP NKX6-2 UQCRC1 ACTB MT-ND2 CDH19 PGRMC1 GLUL MAP7D1 MTRNR2L12 KIFAP3 SCD CNP PPIA ACP1 EDF1 PSMD2 RTN3 GRAMD3 CALM1 SPTBN1 FTL PRUNE2 PTPRS FRMD4B FOLH1 TXNIP CMTM5 MORF4L1 APP PSD3 GSTO1 PCDH17 IDH3A NDN PRR18 PPP1R14A CLMN BCAT1 LMBRD2 PTGDS MAPRE2 IDS TNS1 PADI2 RPS2 CTNND2 PREX2 PTMA NRGN S1PR5 ANLN ERMN PTGES3 WIPF1 PCBP1 HEPACAM RP11-404G16.2 CADM2 KIF21A SPATA13 TMEM151A EDIL3 WASF1 TPPP VAMP2 RAPGEF5 RRM2B HNRNPA1P40 FTH1 RPS27A RPL26\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "oligodendrocyte A" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: PLP1 MT-CO1 CLDND1 MBP PPIA FTH1 MT-CYB ABCA8 MT-CO2 TBC1D15 PTMA RPL3 TTYH2 ITM2B UBL5 MT-ND2 APLP1 MT-ND4 MAL TSC22D4 ERBB3 VAMP2 FIGN EDIL3 SCD RABAC1 MOBP HHATL MT-ATP6 MTATP6P1 CALM2 CARNS1 CAB39 ELMO1 ARF1 GDI1 PIN1 AZGP1 MAG MYRF ZBTB20 PRNP ATP1B1 TMEM59L SLC39A10 PSAP FRMD4B TUBB2B EPS15 ATP6AP2 CDH19 HEPACAM RPL37A ERMN RPL39 RELN CREB5 STK39 HN1 ACTB CSDE1 PCMT1 GPIHBP1 SERINC3 RTN4 ELOVL7 MTRNR2L1 PIP4K2A CLDN11 TUBA1A PEBP1 RAD23B NDUFA2 FIGF CLMN SERINC1 ATRN RPL8 SLC22A17 KIF19 NECAB1 GLUL MT-ND1 PEA15 ACTG1 TMEM88B RPL7 TMTC4 LGI3 RAB3IP DPYSL2 C6ORF1 PEX5L NUAK1 EVI2A PPP1R14A ZCCHC24 SULT4A1 EIF1 RAB2A RPS4X EPB41L3 TGOLN2 ARFGAP2 CFH RP11-219A15.1\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "oligodendrocyte A" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: PLP1 MBP SPP1 EDIL3 CLDND1 QKI RTN4 CRYAB ITM2B TF TBC1D15 KIF1A APOD PEX5L CREB5 TMEM144 ATP1B1 PTMA RPL32 MT-CO1 QDPR RPS28 CALM2 CLDN11 MTRNR2L1 MOBP DOCK10 MT-CO2 PEA15 APOLD1 GPR37 NCKAP5 BIRC5 ENPP2 PTGDS APLP1 ZBTB20 RPL21 CNP CADM2 CSRP1 HSP90AA1 RPS26 CFL1 GRINA TM2D3 HSPA2 NFE2L1 DPYSL2 HHATL OST4 NECAB1 RAB6C-AS1 NDRG2 TSC22D4 DNM3 PBX3 RPL35 MARCKSL1 MFGE8 CHMP4B RPL13 GAPDH ELOVL7 TBCA FAM198B SYT11 NDUFC1 ATP9A MTUS1 TMSB4X RORB PON2 SPOCK1 RPL13A PSD3 ARPC4 PSMD12 TUBD1 MT-ND1 PCDHA10 ARL6IP1 MT-ND4 MT-ND5 PRKAR1A ATXN10 NKX6-2 CAMKK2 GNAQ NPAS3 FAM96B CAMK2G TANC1 NDUFA13 CMAS NGFR RPL31 TMEM235 MRPL47 PSAP OR6D1P CNDP1 ATRN NCAM2 C10ORF90 SKP1 CD9 SLC24A2 SSBP3 SQLE S100B CLIP2 TUBB4A RHOB MT-ND2 DNER UQCRQ TUBA1A HTRA1 TMX4 SCD ANKRD18A ABCA8 TXNIP ERBB4 MT-CYB ACTG1 PADI2 SAP18 PITHD1 RPL23A ZNF343 OCIAD1 PTPRS PPIH ARHGAP35 NCOA4 RPL7 PSMC3 GLUL AZGP1 PRUNE2 ARPC5L SERINC3 PNKD METTL7A FKBP1A TMSB4XP4 RP11-597D13.7 KIF19 ATP1A1 YWHAZ EVI2A RPL3 RPS12 RPS3A RP11-20I23.1 ATP6V0C MTRNR2L6 RPL41 GTF2H2C_2\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "oligodendrocyte A" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: PLP1 MT-CO2 MTUS1 CLDND1 EDIL3 MT-CO1 MBP TF SCD MARCKSL1 CADM2 MT-ND3 MT3 HSP90AA1 RAB3B ACTB MAP1B PIP4K2A MT-ATP6 RPL37A MTATP6P1 ATP11C MT-ND4 S100B ERBB4 ARFGAP2 HEPN1 RPL38 PTMA PTGDS ST18 UBB ZBTB20 RPS10 MT-ND2 KLHL5 ARL8A EDF1 RPL36A SPRYD3 PCMT1 MOBP CNP TTYH2 RAB5C PRKCE RTKN ANLN DSTN MT-ND1 PVRL1 APOD UROD TBCB MTRNR2L8 EVI2A RP11-597D13.7 RPS4X RPL31 TXNIP BNIP3 RTN4 MT-ND5 PDE1C WIPF1 RPS12 TSC22D1 ABCA8 CTNND2 HSD17B6 FKBP4 APLP1 EIF1AX MAP7D1 METTL7A GPX4 PDK4 SPP1 CHN1 CALM2 VAMP2 PSAP TPD52 YWHAB FIS1 EIF1 MTX3 PREPL FTL PEG10 SRP9 PHYHIPL UQCRB CRIM1 SERPINI1 TMEM130 MTRNR2L12 ADAMTS1 RHOB SELT SLC22A17 NFIA GLUL ARPP19 PAQR8 RPL21 YAF2 TMSB4X RTN3 SPCS2 NDUFS6 KCNJ10 CORO1B AP2M1 RAB31 PRKAR1A ATP6V0C RP11-20I23.1 ALDOA RPL13A PLEKHD1 HNRNPA1P40\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "oligodendrocyte A" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: PLP1 TF ZBTB20 SPP1 ATP1B1 RPL37A SEPP1 MTRNR2L1 HHATL FOS PSMC3 METTL7A PTGDS ATP6AP2 APLP1 PSD3 CNP NFIA SEMA3B RP11-111M22.2 RTN4 MT-CO2 MT-CO1 RPL11 GLUL MBP MT-ND2 RASGRF1 BCL6 MT-ND3 PRUNE2 TKT TMEM144 PGK1 RPL21 STMN1 SLC9A6 GDE1 FTL ST18 CCDC121 FKBP8 SLC2A1 TPPP PEBP1 MTG1 JUNB JUND TMSB4X PJA2 GPIHBP1 RPL23A NKX6-2 RPS27A BIRC5 MOBP RPS28 LRP4 RPL35 PARP14 PRDX1 CDC37 ACTB PROX1 MRPL33 CBX6 CKB LMBRD2 TMEM151A INPP5F RNF181 CD9 HSP90AA1 RPL13 EIF1B BNIP3 PRKACB YAF2 KIF21A MCMDC2 RANBP1 TBCB RPL26 MYRF RSL24D1 GUK1 RGCC CRYAB DOCK10 CXXC4 ATP5O TMTC4 COL4A5 VAMP2 CLSTN1 CFL2 PTPRS SERINC1 WIPF1 NDUFS6 CDK5 STUB1 TMOD2 LANCL1 SSTR2 EIF1 SKP1 EDIL3 MGST3 HAPLN4 FIS1 ZNF574 PDE1C SPARC PDK4 HDLBP WSCD1 PNMAL2 PPP1R14A SEPT4 PSMD2 PSAP TNS1 NDRG2 MT-ND4 TANC1 SERINC3 GPR37L1 ARL8A TUBB4A RTN3 S1PR5 COX5B SLC24A2 RPS10 RASGRF2 MTRNR2L8 TGM2 C10ORF54 KLC1 QKI MTRNR2L12 ATP5J MIEN1 MAL ZNF385D SYTL2 RAB3B ATP6V0C RP11-20I23.1 MTRNR2L6 PLEKHD1 HNRNPA1P40 CYB5R3 DNAJC21\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "oligodendrocyte A" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: PLP1 MT-ND4 MOBP TBC1D15 TMEM144 MBP PTGDS SEPP1 MARCKSL1 SCD TUBA1A HSP90AA1 TTYH2 BCAS1 PAQR8 SPP1 FTL PRNP VWA1 PPP1R14A CNP SCD5 QKI MT-ND3 CYP27A1 GAPDH STMN1 MAG APP MYL6 TF DNAJC21 EYA4 IQSEC1 TIMP2 TMEM151A CADM2 SEZ6L2 MRPL11 MT3 PIP4K2A MT-ND2 CRYAB UBE2D2 MT-CO2 PSMA7 CLDN11 MAPK1 MAP1B SSBP3 EIF1B AIF1L NCOA4 ZCCHC24 FOXO1 CTC-575D19.1 MT-ND4L FARSA DNER ACOT7 CRKL ST18 MT-CO3 RTKN NDUFA12 ASPDH CPNE2 TMEM63A TMEM230 PTMA MEGF10 MMD SLC22A17 RPS5 HSPA2 ARL8A NAA38 HIGD1A RAPGEF5 TUBA1B CMTM5 PLIN3 OAT RP11-404G16.2 CNDP1 CARNS1 GUK1 TMEM88B PTPRS SLC24A2 ACP1 CDC42SE2 PPP2R2B ZBTB20 CHADL SERINC3 DHCR24 NPTN PRKAR1A FSTL5 NDUFB10 RPL12 ANLN LRP2 AES EPS15 TSC22D4 TXNIP NDUFAF3 PET100 IDI1 GSTO1 ATP6V0E2 ENPP2 AZGP1 FBXO2 OCIAD1 RPL21 ATP1B1 CLMN LGALS1 RAB6A SEPW1 PPP2R2C TMEM235 NECAB1 ITM2B OAZ1 ARFGAP2 ZNF385D HNRNPA1P40 RPL36A MIF RAB3B SYTL2\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "oligodendrocyte A" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: TF MBP RAB3B PIP4K2A HTRA1 ASPA PTMA IQCK PPM1A SOX2 LANCL1 QKI PDE1C MAPK8IP2 ST18 PDK4 SEMA3B CD24 ZFHX4 RHBDD2 RPL32 STMN1 CREB5 VPS35 RPL31 CLDN11 NACC2 NFIA KCNJ10 TMEM144 ARFGAP2 SPCS2 NCAM2 SEPP1 HSP90AA1 NIPA1 BLOC1S1 CLMN PIEZO2 SQLE CNP S100A6 PLP1 ITM2B GNAQ EPS15 ENPP2 ARL8A RPL35 MTUS1 NDUFC1 PPP2R2B GLDN PAQR8 PTGES3 RP11-597D13.7 EDIL3 LLGL2 RTN4 DPP6 ERBB3 CRYZ SH3BGRL3 CALM2 SLC24A2 EPB41L3 MAP1B MT-ND2 TMA7 HNRNPA1P40 GTF2H2C_2 CYB5R3 SYTL2 ZNF385D\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "oligodendrocyte A" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: PLP1 MOBP ITM2B NDRG2 EDIL3 APLP1 CLDND1 MT-CO1 FTH1 RP11-597D13.7 PRUNE2 TSC22D1 MARCKSL1 PTGDS RPL3 RPS28 ZBTB20 CNP RPL21 ATP1B1 MBP SQLE GNAQ MT-CO3 HHIP RP11-111M22.2 TF CFL1 RPS12 MT-ND1 TLN2 RPS6 SCD5 PTN RAB7A BSG GPR37 TPPP DKK3 CALM2 SCD THY1 PTPRS EIF1 SKP1 CLIC4 OLA1 MT-ND4 NCOA4 STMN1 PGAM1 TMSB4X MTRNR2L12 SEPP1 SLC22A17 MTRNR2L1 RP11-404G16.2 RELN NDUFB5 FAM107B PPIA TMEM63A HSP90AA1 SPTBN1 MT-CO2 MYEOV2 QKI ERBB3 GAPDH MT-ND3 PDE1C PPP2CA OAT HSP90AB1 DNM3 PTMA DHCR24 RTN4 SEPW1 ALDH1A3 RPL35 ANLN GPRC5B ACLY PIP4K2A ATP6V1C1 DLC1 RTKN TMEM144 SPCS2 ZNF536 CKB TMEM160 DOCK10 YWHAQ SERP2 FAM134A SEMA3B PI16 QDPR CALM1 MTRNR2L6 TBC1D15 RPS3A HNRNPA1P40 PLEKHD1 GTF2H2C_2\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "oligodendrocyte A" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: PLP1 TF MBP SPP1 PTGDS RTN4 QKI GDI1 ATP5E MYEOV2 PRNP MT-ND4 TLE4 MAPRE2 ACTB MTCH1 ITM2B DNAJC21 MTRNR2L8 POLR2J C7ORF50 KLC1 ZFHX4 CPNE2 NDUFA13 MOBP ANLN MT-CO3 DNM3 TBCA TMSB4X EPS15 NDUFB1 VAMP2 CRYAB PTN TUBA1B CALM3 SEPP1 RPS28 ATP1B1 NFIA SALL1 STUB1 EYA4 TMEM144 ITPR2 PPA1 TTYH2 NDUFB4 MT-ND1 SCAMP5 SCD SLC31A2 DPP6 PDK4 RPL38 JUN NFE2L1 PAQR8 NHP2L1 YIPF3 RPL23A FTH1 PPP1R14A NPAS3 LGALS1 SOX6 RP11-404G16.2 MFGE8 FMO5 SV2B RPL32 ERMN ZCCHC24 MTUS1 ATP6V0D1 KAL1 LCNL1 SYNPR PSMB5 UHMK1 PRKAR1A PGK1 CD99L2 MAP1B ENPP2 TMEM63A S100B RHOA CTBP1 CYP27A1 PSAP MT-ATP6 CLDN11 CARNS1 UQCR10 SLC6A1 PIP4K2A RHOB HEPN1 RPL26 ATP6V0C RP11-20I23.1 CTC-575D19.1 HNRNPA1P40 TBC1D15\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "oligodendrocyte A" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: TF MBP ZNF385D TMEM144 STMN1 PLP1 ST18 HHATL FRMD4B QKI RTN4 MARCKSL1 CRYAB ANKRD18A PSD3 MOBP NDRG2 TMSB4X MTX3 MT-CO1 TLE4 LINC01296 PPP1R14A GLUL SEPP1 MT-CO2 TUBA1B S100A1 SH2D6 MAP1A SPP1 STAG3L5P PTMA GPRC5B BCAS1 CLDND1 PTGDS ISCU MT-ATP6 PRKAR1A MTUS1 CAPZB SAP18 INPP5F S1PR5 UQCRQ NECAB1 PGRMC1 SUMO2 DHCR24 GNB1 MSMO1 NAT8L OPA1 SEZ6L2 CTNNB1 COX7A2 OAZ1 YWHAG MAP2K4 ABCA8 ATP5H VAMP1 MED10 DRAP1 SCD ELMO1 HSP90AA1 RAPGEF5 TOMM20 BEX4 RPL37A ZFHX4 PPDPF EIF1 AURKAIP1 NARS GSTT1 RPS27A RNF152 PDE1C RBX1 DGUOK ARFGAP2 GTF2H2C_2\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "oligodendrocyte A" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: PLP1 TF TBC1D15 MBP SCD TMA7 MT-CO1 DHCR24 ATP1B1 MT-ND3 MT-ND4 GAPDH PTGDS HNRNPA1P40 MTRNR2L1 YWHAZ MYRF SPP1 TMEM144 S100A1 CNTNAP3 SLC24A2 MT-CO2 CNP MAP1B RTN4 ELMO1 PAQR8 RTKN NR1I3 RPS27A MTRNR2L12 COX8A MIR6723 PSMC3 APLP1 MOBP YWHAB RPL35 CLDND1 PCDHA4 RPS5 MT-CYB CLMN HEPACAM GSTO1 RPH3A SERINC3 DYNLL1 COX4I1 SCN1B NFE2L1 KIAA1755 DPYSL2 SRP9 LRP2 GPR37L1 TPT1 RPS3A NKX2-2 RASGRF1 HHATL YWHAQ ALCAM EID1 RP11-597D13.7 PDK4 SPOCK1 RAP2A PEX5L MT-ND2 RPL38 NDUFA11 PKM USMG5 JUND BLVRB TMSB4X PADI2 GLUL CALM2 EYA4 FTL MRPL55 GUK1 PROX1 DNAJA1 GRM3 PPDPF SCOC STMN1 SEPP1 APBB1 PJA2 ARL8A UQCR11 SYPL1 ZBTB20 TUBA1A PPIA PPP2R2C ST6GALNAC3 EIF1 COX6C NACC2 DNM3 RGCC CARNS1 QKI CTSD RPL12 FAM127A UBE2D2 PPP3CB RPS26 ST18 ARFGAP2 TERF2IP MFGE8 DYNLRB1 KLC1 RAB3B SYTL2 MTRNR2L6 TRIM59 MIF\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "oligodendrocyte A" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: TF MBP PLP1 MT-CO2 ZNF385D CALM2 APLP1 RP11-111M22.2 MT-ND2 AK5 NKX6-2 CLDND1 ST18 PAQR8 RPL37A ZBTB20 PTGDS SCD STMN2 TMEM144 MOBP GPIHBP1 RPS6 SPP1 OR6D1P MT-CO1 PIP4K2A RPS15 SEPP1 PEBP1 OLIG1 RPL21 CNDP1 SPOCK1 BCAS1 RNASE1 MAP1B EDIL3 HNRNPA1P40 ANKRD18A SLC31A2 ERBB3 APP ACOT7 RPL38 PRKAR1A EIF1 TCEAL7 ARPP19 MT-CYB KIF1A OAZ1 LANCL1 PCDHGA10 TMEM88B SLC24A2 SOX10 CTSD YAF2 ADARB2 COPE MT2A MT-ATP6 TSC22D1 SKP1 HHATL CORO2B RPS27A APLP2 TMSB4X NFIA MT3 NDFIP1 MRFAP1 NPPC SCD5 PSD3 SLC38A1 FRMD4B CNTNAP3 ARL6IP1 SARAF ACTB KCNAB2 TTYH2 SPTBN1 SCOC KIF21A ADSS EIF1AX RPS28 CYB5R3 SLC6A1 CALM3 CLIC4 GPX4 C12ORF57 BEX2 JUND THEMIS2 HCN2 NDRG2 RPL3 TXNIP EIF1B QKI CARNS1 FAM127A FA2H CNP MLF2 MT-ND1 RTN3 SYT11 NDUFS5 CHMP5 EPS15 SPARC ITM2C SPATA13 MT-ND3 MT-CO3 HSPA2 TOMM22 OST4 DOCK10 GNB1 PRKACB DNER OPALIN FSCN1 TOMM20 EDF1 RP11-404G16.2 TUBA1A PDE1C ASPA TOMM7 FAM96B ABCA8 MAP7D1 ATP5H POLR2J PPP3CB ATP2A2 MARCKSL1 PTMA TLE4 CTC-575D19.1 QDPR SOX2 GLUL TALDO1 RAB1A PSAP COX4I1 EIF5A2 C1ORF105 LINC01296 B3GALT2 PPAP2B CD9 HSP90AB1 ZCCHC24 PADI2 CLDN11 MRPL55 ATP6V0E2 CFH PGK1 PLEKHD1 RAB3B GTF2H2C_2 TBC1D15 SYTL2\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "oligodendrocyte A" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: PLP1 APLP1 EDIL3 DNM3 CLMN RPL18A CALM2 CAPNS1 ATOX1 PAQR8 MOBP MBP PSAP RAPGEF5 MT2A ARL8B MYEOV2 RPL37A ATP5G2 TTYH2 MTRNR2L1 RPL41 EIF1 MT-CO1 LANCL1 SLC6A1 RPL13 QDPR VAMP2 SLC24A2 TRMT112 PTMA PSMC5 SEPP1 CRYAB PMEPA1 GPIHBP1 RPL35 GLDN DKK3 MAG MT-ND1 CLDND1 RTN4 RAB9A OAT ERMN S100A6 GPRC5B TXNIP CD63 CLIP2 GSK3A DPYSL2 RPS12 TUBA1A MTCH1 UQCRC1 ERBB3 SYT11 CMAS SNRPE ATP6V0C MTRNR2L8 CYB5R3 GADD45B FOS ATXN10 PIP4K2A SLC22A17 UBC HEPACAM SPP1 PRNP HSP90AB1 RP11-632C17__A.1 METTL7A TCEB2 OCIAD1 RPL7 MAL RPL26 MYRF FIGN CNP HSPA8 RHOA RABAC1 OLIG1 ARF5 MED10 JUNB SERF2 HSP90AA1 GPR37 ANLN PPIA ZBTB20 EXTL2 TMEM144 RPS15 C14ORF132 TMSB4X COX4I1 SLC25A6 MT-ATP6 AP2B1 PON2 ZNF536 EPS8 LGI3 RPS27A MTRNR2L12 RP11-20I23.1 TOMM20 ABCA8 ERBB4 RPL38 SERINC1 ALCAM SPOCK1 MAP1B RPL23A RTN3 SEPW1 ITM2B RPL3 ZNF385D ARFGAP2 RPL17 RPL17-C18ORF32 ATP6V0E2 CFH OR6D1P\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "oligodendrocyte A" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: PLP1 MT-CO3 TF MBP RPL37A MT-ND5 NINJ2 MT-ND4 MTRNR2L12 MT-ND2 EDIL3 ZBTB20 RTN4 OLIG1 NCAM2 LGI3 PEX5L ITM2B RAB6A EIF1 TMEM63A ANLN FTH1 TCEAL5 CHADL ERBB3 SLC9A9 NPTX2 MT-ND4L CTSD RGCC GHITM MT-CO2 SNAP25 EYA4 UQCRQ NECAB1 PPP1R14A QKI DPYSL2 MT-CO1 APLP1 OR6D1P TRMT112 RLIM ACSS1 RPL31 MTATP6P1 SNRPN RPL23A MAL CD9 BIRC5 TPD52 CDH19 PRDX2 NUPR1L RPS6 PJA2 STAG3L5P AZGP1 MT-ATP6 PTGDS GPM6A AIF1L SCD CREB5 MAG WDR47 VWA1 DOCK10 OCIAD1 PRKACB STAB1 ARL6IP1 TXNIP UROD ABCA8 LINC01296 PGRMC1 RPS15 CDC42SE2 EDF1 TMEM144 CLIP3 HHATL TRIP6 RPL35 ESCO2 MAP1LC3B SLC38A3 KLC1 CXXC4 STMN1 PTMA APP FLT1 LANCL1 DNM3 VAPB SYTL2 RAB3B ZNF385D PPP3R1 TRIM59\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "oligodendrocyte A" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: PLP1 DHCR24 MBP SPP1 SEPP1 DPYSL2 MT-CO1 PTGDS TMEM144 TF MT-CO3 CNP MT-ND2 MT-CO2 TMCC3 SPOCK1 MT-ND1 FTL CLU PIP4K2A GPRC5B EPS15 SCD NUDT21 TTYH2 RPL37A MT-ND4 SLC24A2 SEPT4 KLC1 MTRNR2L12 MTUS1 CFL2 CALM2 RPL21 TXNIP PTMA ANLN TSC22D4 MOBP PPP2CB GNAQ GDE1 PRKACB GNB1 MTCH1 KLHL5 MYRF ITM2B ZBTB20 TALDO1 SHC4 UBB HHIP TPPP FASN ADARB2 ALKBH7 LANCL1 RPL11 MDH2 CSRP1 APP MAP1B ATP5E JUND HSPA2 STUB1 CFL1 ACTB MARCKSL1 NDUFAF3 RHOB FKBP8 QDPR EIF1AX PROX1 HSP90AA1 PTRF HSPA8 RTN4 MTRNR2L8 TERF2IP CPNE2 ERMN DPF3 CARNS1 FMO5 PARP4 TMEM63A TGOLN2 COX7A2L CNDP1 ZCCHC24 WASL MT-ND5 TMEM151A ZFP36L2 ZFHX4 ENPP2 BCAP31 MEGF10 MRPL47 TMEM117 PEBP1 ATP2A2 SPTBN1 EIF1B CRYAB SEMA3B MYOT ST18 PLS3 EIF1 S100B SLC22A17 RPS10 TMSB10 OCIAD1 CYB5R3 FAM127A ARHGAP35 NPAS3 TNS1 MTX3 CD9 RPL13 RAPGEF5 NDFIP2 PTPRS FTH1 SYNGR1 ISCA1 PPDPF AP1S1 EDIL3 UBC MT-ATP6 KIF1A ASPA HEPACAM ARPC4 RP11-111M22.2 ADORA1 MPP1 MAL NECAB1 KIFAP3 SRP14 DNAJC21 TBC1D15 RAB3B LINC01296 B2M SYTL2 COX6A1 RPL36A GTF2H2C_2\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "oligodendrocyte A" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: PLP1 MBP PTGDS MAP1B ANKRD18A MT-CO3 PTMA FSCN1 TF EDIL3 ARL6IP5 CREB5 PIP4K2A ETFB RP11-597D13.7 GLUL TSC22D4 ACTB CRYAB MT-ND2 APLP1 MOBP TM2D3 RTN4 RPL32 CLIC4 PEBP1 GABRA1 MT-ND5 MAPK1 NDUFB2 YBEY DOCK10 MAP1A HSP90AA1 RHOB CLU YWHAB FOLH1 CNP LRP2 EDF1 SOX2 GBE1 LCAT FTH1 MT-ND4 HTRA1 PRUNE2 ATP1B1 SLC1A3 MT2A CD9 MTRNR2L1 MT-CO1 SKAP2 TMEM144 PPP2CA AP2B1 CTNNB1 CFH HSPA2 VAMP2 EPS8 PTRF STMN1 SNX3 SCN1A MRPL15 AES MORF4L2 APOD HIGD1A CYP27A1 CPLX2 SERP2 QKI DNER TMTC4 RORB PEA15 MARCKSL1 TOMM20 CCDC25 ASPA APBB1 DNAJC5 TMSB10 TMSB4X EPB41L3 SEMA3B VDAC2 SPCS2 GPR37 TUBA1A PAQR8 SSBP3 SCD LGI3 RPL21 ZBTB20 FRMD4B DRAP1 SYT1 CCDC124 RPL11 S1PR5 RAPGEF5 TTYH2 SCN1B TMEM63A RAB3IP AP1S2 MAL RPL13 RSL24D1 AP1S1 RPL35 SNAP25 ARF1 ABCA8 COX17 DLC1 MAG AK5 PPP1R14A SEPT4 HCN2 NDUFB5 LMBRD2 TRIM59 MTRNR2L6 SYTL2 ZNF385D RAB3B RPS28\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "oligodendrocyte A" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: PLP1 MBP MT-CO2 TUBA1A SPP1 ATP1B1 RP11-111M22.2 CLDND1 TF RTN4 CTSD RPS15 HSP90AA1 SPOCK1 CALM2 SYT11 ATP5G2 GPRC5B CTNNA3 CADM2 MT-ND2 CRYAB KCNJ10 ZBTB20 MYOT CLDN11 MT-ND4 TXNIP APLP2 HNRNPA1P40 TMEM63A PRKACB KLC1 PTGDS TALDO1 TLE4 FAM127A SEPP1 CNDP1 TUBA1B ENPP2 SEMA3B DDR2 PEA15 RPS27A MYL6 PEBP1 UHMK1 ATP5I PADI2 POLR2L USMG5 JUND MTCH1 SPATA13 EDIL3 KIAA1755 MARCKSL1 MT-CYB HSPA2 SEPT4 YWHAH SKP1 SMS ARF5 CLU RPL26 HEPN1 SLC24A2 HMGCR MOBP GPX4 DOCK10 PPP2R1A GDE1 CTBP1 NR1I3 RNASE1 SUB1 SEPW1 CREB5 RPL31 IQCK MTUS1 PRDX2 MAG UBE2V2 ATP1A1 PTMA APP RTN3 ATP6V0E2 ADORA1 NIPA1 DPYSL2 PPDPF MAPK1 PRKAR1A TUBB4A APBB1 HHATL TBCA LINC01296 COX5B APLP1 ARL8B DYNLL1 PIP4K2A FKBP8 TMSB4X PPP1R14A MIR6723 MT-CO1 CFH BIRC5 RPL7 GTF2H2C_2 RPL21\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "oligodendrocyte A" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: PLP1 MBP PTMA ACTB SARAF SCD TXNIP MYEOV2 FTL NPAS3 MT-ATP6 ABCA8 TMEM63A TMEM144 PEBP1 VAMP2 QKI MT-CO3 LGALS1 PRKACB TIMP2 SPP1 MOBP MAG CRYAB PDK4 PI16 NACC2 GLO1 PTGDS HSP90AA1 APLP1 TF ATP5G2 CHGB PINK1 CFL2 RAB3B AIF1L ZFHX4 POLR2L CLMN GPRC5B ARF1 RPL13 TBR1 DPYSL2 ERMN SLC25A4 PITHD1 RABAC1 MT-ND2 ARL1 SUCLA2 RAB40B DHCR24 CDK17 CHADL RPL8 MT-ND3 COX5B APOL6 NEGR1 ATP5E HHATL ANLN ZCCHC24 AES SUMO2 CLDN11 KIF1A NHP2 TSC22D4 UQCR11 TPGS2 PPP2R1A ZBTB20 MTRNR2L12 PROX1 SOX10 C6ORF1 UBE2M CALM2 PRUNE2 NKX2-2 UQCR10 ATP6V1E1 USMG5 TMEM235 KIAA1755 ELMO1 LGI3 PLD3 ITM2B MARCKSL1 CALM1 SYTL2 ENPP2 SERINC1 TLN2 OR6D1P MYRF HSPBP1 BNIP3 PIP4K2A EDF1 RPS2 SLC1A3 SNAP25 POLR2K MRPL37 MTRNR2L1 EIF1AX CNP CMTM5 ZNF536 PPIA CHP1 GLUL MORF4L2 PTPRZ1 GDE1 TMEM88B CTNNB1 CYP27A1 ARHGDIA MT-ND1 NDUFS5 PCMT1 MTATP6P1 C19ORF70 TNS1 CLDND1 HTRA1 DNAJC6 POLR2I PSMD8 NRAS MIF LINC01296 IDS GTF2H2C_2\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "oligodendrocyte A" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: PLP1 SPP1 CLDND1 TF MT3 MT-ND2 MT-ND4 MT-CO3 FTH1 TMEM144 GLUL ST18 TBCB NUAK1 SCD CCDC124 TUBA1A RTN4 RAPGEF5 RP11-111M22.2 EIF1AX FAM107B TPPP MAL YWHAB ACTB DHCR24 DNM3 PTGDS ATP5J HNRNPA1P40 MGST3 APLP1 FA2H ATP5F1 RHOA GLDN TUBD1 GPRC5B CRYAB C18ORF32 UBA1 PCDHB4 ERMN NDUFA13 APOD MT-CO1 OAT ANLN RPL7 ANKRD18A ZFAND5 KIF1A SYNGR1 RAB6A POLR2I AGT GTF2B SOCS3 GAPDH GNB1 PSAP SEPP1 USMG5 ACTR1A TM2D3 MT-ATP6 IFI6 EIF4A2 MBP TLE4 NIPA1 ETFB ERBB3 MAP1A DSTN SPTBN1 UHMK1 PEA15 SERPINI1 FAM131B FAM84B TUBA1B EDIL3 RPL37A ZNF536 MOBP RNF11 TGOLN2 MT-ND4L SPRYD3 TIMP2 UBB TUBB2B ATP1B1 RPS26 WIPF1 PRNP CALM1 MT-ND3 ZCCHC17 PAQR8 RPL3 NUDT21 FAIM2 VDAC3 DNER PIP4K2A NEGR1 GPR37 COPE PVRL1 PPIA MT-CO2 FRMD4B SLC1A3 EIF1 ASPA DPYSL2 ATP6V1E1 TERF2IP SCOC SYT11 MAPRE3 STUB1 RPL13A QKI HSP90AB1 NDFIP1 BNIP3 IL10RA HSP90AA1 NKX6-2 MT-CYB ZFHX4 CLU BIRC5 MT-ND1 MTND1P23\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "oligodendrocyte A" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: PLP1 ZBTB20 QDPR QKI MBP ENPP2 TF FSCN1 APBB1 OLIG1 VWA1 SLC22A17 TMEM144 SCD APLP1 CNDP1 ACTB HEBP2 MOBP SPP1 DPYSL2 PAQR8 EDIL3 RTN4 CALM2 MT-CO1 TBC1D15 NR1I3 BRINP3 SRP9 PLS3 TPI1 DCTN1 ZNF536 RPS6 FKBP8 CCDC124 AK5 BEX4 TMEM160 PPP2CA FTH1 SCD5 CREB5 TUBB4A COPE SLITRK1 INSIG1 TLE4 ACTG1 SEPP1 ARL8A ABCA8 LANCL1 PIP4K2A TBCB HHIP NKX6-2 SLC1A3 RPL13A GAPDH SHC4 MAP2K2 LDHB MAG AP2S1 WBP2 PTGDS NFIA MAL NDUFA11 SLC24A2 CFL2 CLDN11 CNP JUND ROBO3 APOD MT3 SMOC1 CTC-575D19.1 TMEM117 MT-ND3 MT-ATP6 SEMA3B DNAJA1 NKAIN1 ST18 PEBP1 ANLN RPL37A MTRNR2L12 GLUL MT-ND4 FOXO1 ZBTB18 ELMO1 CPNE2 RPLP0P2 UBA52 EIF1 PVRL1 LGI3 ATP1B1 METTL7A PJA2 HSP90AA1 PPP1R14A FIGN OLIG2 PSMD12 COL4A5 ADARB2 ATP13A4 BCAS1 ARPC5L UQCRFS1 STMN1P1 UBC HSPBP1 RPL35 MEGF10 CYFIP2 CKB SERINC3 NDUFB5 CADM2 BSG MYRF PIEZO1 RAB9A ACSS1 TPRG1L FAM107B PSAP CLMN ZNF174 RPL7 PHF11 RPS3A SNCA TXN MT-CO2 RP11-111M22.2 FTL PDE1C ZFP36L2 MTRNR2L8 SNAP25 PTPRZ1 HNRNPA1P40 RPL13 OR6D1P TRIM59 RPL21 CYB5R3\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "oligodendrocyte A" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: PLP1 MBP MOBP CLDND1 RPL37A APLP1 RPS15 HSP90AA1 YWHAB PAQR8 TPPP MT-CO2 TTYH2 CRYAB MAG LINC01296 TMEM144 ZBTB20 DLD CLMN SPP1 ERBB4 MEGF10 GRM3 MAP1LC3A CDK5R1 LMO4 PEX5L PLD3 CFH GPRC5B PPDPF TMEM235 MFGE8 SEMA3B TMSB4X YWHAZ SOD1 ARPP19 PTMA MT-ND2 STUB1 NDRG2 NEGR1 ACSS1 YAF2 RHOC PPP1R14A SARAF ATP1A3 HSPA8 TOMM7 PDP1 EPS15 MAST3 ARL6IP1 MT-ND4 ALCAM RPS4X PEA15 PRKACB S1PR5 MT-CO1 CD9 RELN STOM BCL6 RTN4 MRPL33 RTKN TPT1 ST18 PPP2R4 GPIHBP1 MYRF HHATL APOD CTSD EVI2A RAP1GDS1 KCNJ10 TMEM63A TMTC4 TRIM59 CLDN11 VAMP2 STMN1 ARL6IP5 GYG1 LANCL1 SLC24A2 CYC1 ZNF536 ATP1B1 EID1 SALL1 MT3 FTL SCD5 PHYHIP SHC4 FAIM2 CNDP1 ANKRD18A TBC1D15 DNAJC21 HNRNPA1P40 ZNF385D SYTL2 RAB3B GTF2H2C_2\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "oligodendrocyte A" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: PLP1 HHATL QKI MT-ND3 CLDND1 MT3 APLP1 SEPP1 MT-CO1 SPP1 GABARAP TF NAPB TUBA1A RTN3 CNP ST18 MT-ND1 SNAP25 CARNS1 RPS4X RPS15 RPS6 TMEM144 APOD S100A6 MBP CNDP1 PPP1R14A SKP1 YIPF3 ENPP2 ACTR10 TMSB4X RPL39 ETFB ALDOA TMEM88B ALCAM RPS27A FTH1 AURKAIP1 ST6GALNAC3 SLC24A2 COX6B1 RPL8 FIS1 MEGF10 PREPL FBXO2 RNASE1 INSIG1 MT-ND2 SPARC MRPL33 COMMD6 NFE2L1 PCMT1 ESYT1 ATP5I CRYAB FOLH1 ATP1B1 DPYSL2 LGALS1 HSP90AA1 YWHAQ LSM4 MARCKSL1 PTMA RELL1 MTRNR2L12 HSPE1 RP11-597D13.7 FTL ZFHX4 EDIL3 IDI1 DSTN SEPW1 LIMK1 DNER ATP6V0E2 COX7A2 TUBB4A NCAM2 PSMD8 KIF21A PPP2R4 SPTBN1 TMEM151A PAFAH1B2 RPS3A ANKRD18A C19ORF43 TMEM235 PPP3CA HTRA1 ACTB ANLN PRNP MAP7D1 CYB5R3 PEBP1 ARF1 RPL37A TTYH2 DPF3 SPOCK3 MAST3 COX7B FOXO1 PSAP MOBP GPR37 PRDX1 RPL35 ABCA8 UBL5 C10ORF54 S100B ZNF536 ZCCHC17 CREB5 MTUS1 GUK1 MAP1LC3A RP11-20I23.1 RPL17-C18ORF32 ATP6V0C ESCO2 RNASEK-C17ORF49 EVI2A RPL36A RPL17\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "oligodendrocyte A" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: PLP1 MBP HSP90AA1 MT-ND3 MT-ND2 MT-CO3 TF MTUS1 HHIP TMEM144 MT-CO2 ACTB SLC24A2 CLDN11 CNP TLE4 ANLN RAB3B APLP1 ATP1B1 APOD GDI1 ZBTB18 ACSS1 S100B PSMB5 RAB6A SCD RPL13A TLR1 HSD17B3 FTL ARL6IP5 BCAS1 RP11-111M22.2 FAM134A NDRG2 GLUL QKI APP MT-ATP6 CDK17 PTGDS MT-ND4 ZBTB20 ERMN TBC1D15 EPS15 LHFP TMEM59L LANCL1 MTRNR2L12 RPL3 MT-CYB GAD2 TMEM14A MAP1B DYNLL1 DYNLL2 GRM3 RNASE1 OPALIN LMBRD2 AK5 CRYAB POLR2I RPL21 NFIA C1QBP MT3 PLIN3 FOXO1 BEX4 STXBP1 PADI2 YIPF3 COX5B S100A13 MTPN AGT RPS10 TMEM88B ARL6IP1 PAFAH1B2 VEGFA MT-ND5 PTGES3 NR1I3 TMEM63A GAPDH KIF1A PRUNE2 TMEM258 NEGR1 CREB5 HAPLN2 SLC6A1 CAMK2G RAB40B RCAN2 RGCC HSPA8 COX7C RPL13 SEMA3B RPL26 CLU SYPL1 CLMN HTRA1 SPP1 ACTG1 EDIL3 REPS2 BCAP31 CDH19 GPR37L1 EIF1 HHATL TTYH2 PEBP1 ST18 TRIM59 QDPR DPYSL2 TXN PGM2L1 ADAMTS1 MAPRE2 PEX5L PEG10 EIF1AX PPP3CA TMEM151A YWHAB PJA2 NCBP2-AS2 ZCCHC24 DYNLRB1 CA2 GPR37 TMSB4X CLDND1 ZNF536 MT2A APOL6 BEX1 RPS28 ARF3 TSC22D4 MAGEH1 SLC25A22 CALM1 MTATP6P1 SELM SEPP1 GABARAP ATP2B4 EIF4G2 ST6GALNAC3 ABCA8 PTMA DNM3 EMP1 GSK3A RPS15 CD63 CTNND2 CSRP1 ELMO1 BIRC5 FAM107B SEPT4 MT-CO1 NIPA1 CMTM5 SMS CFH SERF2 FAM3C SYTL2 ZNF385D\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "oligodendrocyte A" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: PLP1 MBP MT-ND4 MOBP TF EDIL3 RAB3B QKI FTH1 TUBA1A ATP5I MARCKSL1 SCD ZNF365 MEGF10 RPS27A CNP CLU ARL8A TBC1D15 ZNF385D HSPE1 KIF21A MAP1A CLDND1 RPL13 PSAP EPHA6 MT-CO3 VWA5A ENSA PEBP1 RTN4 MAL ANLN NRSN2 SNRPN PAQR8 HEPACAM SPP1 SLC9A9 CNTN1 PSMC1 COL9A2 TMSB4X MT-ND2 CALM1 ABCA8 SYT1 RAB2A ATP1A2 MLLT11 ACTB MIR3916 STMN1 KCNC2 MTRNR2L1 GPM6A PJA2 FAM3C MTRNR2L12 CYBRD1 GLUL PPA1 PRKAR1A RPL21 JUND GPR37L1 RPL15 TTYH2 RP11-597D13.7 CHCHD2 MAG PLCB1 ENPP2 PTGDS HMP19 MT-ND3 CALM3 SEMA3B TUBB2B RTKN SPTBN1 HAPLN2 DYNLRB1 OR6D1P MFSD6 MT-ND1 DNAJB9 SYT11 ST18 SARAF EPB41L3 MAP1B RNASEK-C17ORF49 RPL13A MTRNR2L6 DNAJC21\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "oligodendrocyte A" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: PLP1 MT-ND3 QKI TUBA1A TF PDK4 MT-CO2 MT-ND2 SEPP1 HHATL BSG TSC22D4 BLOC1S1 RTN3 PAQR8 NGFR ST18 PREPL TMEM144 SPP1 MGST3 MARCKSL1 VWA1 RHOB PLIN3 AP1S2 MRPL55 STK39 PSAP TIMP2 PTPRS PCDHB10 SARAF RPL12 PPP2CB ATP6AP2 GPX4 SUB1 CHADL MEGF10 UBA52 PEA15 SYPL1 ACAT2 CLDN11 RTKN GUK1 NFE2L1 ANKRD18A SCAMP5 SPARC CTSD ELMO1 BAD CALM1 RASSF8 APOD GOLIM4 CNP APBB1 BNIP3 MTRNR2L1 CD44 MBP TMEM88B CTNNB1 PPP3CB FOS RNF11 HSP90AB1 DHCR24 MAP1B DYNC1I1 PEBP1 UBC TANC1 SCD SPTBN1 NDUFB1 CRYAB MRPL51 GPRC5B CP GPIHBP1 ETFB ADCY10P1 IQSEC1 ANGPTL4 RNASE1 S100A13 KCNJ10 ANLN PRKCQ CA2 GPR98 DPYSL2 ACTB CNDP1 HSP90AA1 SCD5 PIEZO1 PPP1CB ADSS DNAJC6 FTL SUMO2 PAFAH1B2 STXBP6 RGCC PIK3R1 RAPGEF5 PREX2 PMP2 MT-ND1 ALKBH7 ZFAND5 PKM RP11-597D13.7 MT-CO3 APP PADI2 RPL37A SHC4 SKAP2 TBCA TUBB4A ERBB3 RPL13A CLDND1 S100B SERINC1 EDIL3 ATP1B1 FRMD4B USMG5 TENM1 SEMA3B MTRNR2L6 ISCA1 MIF\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "oligodendrocyte A" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: PLP1 MBP CLDND1 PSAP TMEM144 GLUL EDIL3 CNP MOBP APLP1 SNAP25 TF ST18 TMEM63A LAMTOR5 ATXN10 NDFIP2 RTN1 MYRF PRR18 DOCK10 MT-ND1 SPP1 MT-ND3 MAPRE2 MT-ND2 NPAS3 PRNP SYTL2 RAB3B RPS6 PON2 C1ORF52 JUND CAPNS1 RPL11 COX6B1 SARAF RELN ADCY10P1 MT-ATP6 COMMD6 FSCN1 DPYSL2 SPTBN1 MYEOV2 MFSD6 MT3 TSC22D4 TLE4 ATP1B1 ATP9A C11ORF31 VAMP2 DRAP1 RAB5C PRPS1 ARL6IP5 SLC25A6 GAPDH SEPP1 CLDN11 MAL MT-ND5 PSMD12 RHOB RHOA INSIG1 CSDE1 MTRNR2L8 FAM107B FBXW11 RPL23A PROX1 ZCCHC24 UQCR11 ITFG1 RAN HHIP COX6A1 RPL6 GOT2 CLIC4 POLR2L AZIN1 SLC24A2 PLD3 MAG SPARC ATP5G2 KCNMB4 RPS10 NECAB1 RPS28 PTMA FAM19A2 MTRNR2L12 SLC31A2 ITM2B SYT1 ALCAM SCD5 PTGDS GPRC5B RPL15 FRMD4B RAPGEF5 QKI ARHGDIA MORF4L1 COL4A5 ADAMTS1 TOMM20 TMSB10 ZBTB20 STMN4 RBX1 TXNIP TIMP2 NDUFB7 RPL7 OLIG1 MTRNR2L1 BCAS1 RPS5 MTUS1 FAM174A IDS C18ORF32 RPL21 RPS3A RPL17-C18ORF32 MTRNR2L6\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "oligodendrocyte A" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: PLP1 TF MBP RAB3B SSTR2 POMP SPP1 PPDPF QKI S100B ATP5E IQCK TUBA1A DHCR24 EIF1 RELN ARFGAP2 PCDHGA6 ITM2B RP11-404G16.2 ALCAM PEBP1 PPIA ATP6V0E2 RBX1 GAPDH PPP1R14A ABCA8 GDA FA2H RTN4 CA11 RNASE1 RPL7P49 CDH19 SLC31A2 EPS8 CYB5R3 RPL13A PTGDS CNP NINJ2 ERBB3 FRMD4B CLDN11 TMSB4X EVI2A VAMP2 ANKRD18A DNER SPOCK3 TOMM20 TMEM235 NGFRAP1 CRYAB PSD3 MT-ND4L RPL23A PDCD5 LANCL1 GLDN CTSD TMEM63A STMN1 FTH1 MAP2K2 LINC01296 GSTT1 CORO1B ZBTB20 LGALS1 MOBP ATP5G2 DOCK10 GSK3A MTUS1 PRNP ASAP1 ERMN NECAB1 TLN2 VAMP1 MT-ND4 DPY19L1 EPB41L3 LHX6 COX7C POLR2I S100A1 PRRX1 TTYH2 ST18 HHATL ALDOA RPL21 NSF GTF2H2C_2 TBC1D15 NR1I3\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "oligodendrocyte A" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: PLP1 KLC1 RPL13A TMSB4X YWHAG SPP1 CLDN11 MBP CRYAB TMEM144 SEPP1 FTH1 FSCN1 DOCK10 GPRC5B SPOCK3 TBCB ANKRD18A ATP1B1 NKAIN4 ST18 TXNIP CADM2 CD24 PPP2CB TALDO1 NCDN ASAP1 DHCR24 TUBB4A PCDHA9 EIF1 PLD5 C4ORF3 PSAP ATP2A2 SEMA3B CLTC CADM3 CLDND1 RHOB GUK1 SPATA13 TPGS2 COX14 RPL26 NAPB KCNJ10 RPL11 MT-CO2 TMEM258 PPP3CB PTPRS RANBP1 MAPRE2 MT-CO3 ACTR10 MT-CO1 SELT UHMK1 EIF4A2 NKX2-2 STMN1 MAP1A HSP90AA1 DPY30 RPL39 THYN1 RPL36A SSBP3 QKI PAQR8 CNRIP1 TIMP2 RPL37A CD59 RPS15 MTRNR2L1 ATP5B CSRP1 PPA1 PPP1CB UQCRC2 RPS5 UBE2N ATP1A1 DNAJB6 FKBP1A MOBP TMEM63A FIS1 C19ORF70 TANC1 TMEM230 TF KCNK1 PTGES3 RPL31 EDIL3 GAPDH PPP3CA RTN4 GLDN MTRNR2L6 ARFGAP2 MTRNR2L8 MTRNR2L12 GTF2H2C_2 RPS3A TBC1D15\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "oligodendrocyte A" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: TF MBP CLDND1 MT-CO3 QKI MOBP PLP1 ZBTB20 CA2 APLP1 SPP1 NKX6-2 PSD3 GPRC5B MT-ND4 PDE1C CADM2 TMEM144 EVI2A GAPDH ESCO2 NDUFB7 SOX2 TENM3 SERF2 YWHAZ EFR3A STMN4 BCAS1 MYL6 SEPP1 MTRNR2L1 ERMN KIF21A PIP4K2A CALM1 S100B MMP24-AS1 PREPL OPALIN GPR37 ANKRD18A UQCRQ CSDE1 MT-CO2 MT-ND3 ALCAM TM6SF1 RP11-111M22.2 PPIF RPL8 ELMO1 EDIL3 DSTN SCD SIRPA LGI3 JUND PCBP1 MYRF SCML2 ARPC4 PIEZO2 LAMA2 COX5B KIFAP3 OAZ1 OXR1 APP ERBB3 PAQR8 CAMK2G UBB ST18 ATXN10 EPS8 TTYH2 COX4I1 MT-CO1 NCKAP5 NCAM2 ZNF536 DYNLRB1 TRIM59 ARFGAP2 MT-ND2 MTND2P28 ATP5A1 NR1I3 MTRNR2L6 RAB3B SYTL2 ZNF385D DNAJC21 TBC1D15\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "oligodendrocyte A" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: PLP1 MOBP MBP TMEM144 RAB3B ERBB3 TRIM59 RTN4 MT-ND4 PTGDS GPR37 ZBTB20 TF ZNF385D SEMA3B CARNS1 PDE1C HSP90AA1 RAD23B SPOCK3 ATP5A1 RAB3IP CNP MTRNR2L1 VAPB CMTM5 PEPD PEX5L PTMA SQLE MAP1A CRYAB RPL37A RAB6A CAMK2D FASN SLC6A1 ST18 MT-CO2 SEPP1 SEC61G ELMO1 APLP1 TMEM88B APOD NDUFB1 RAB40B TMTC4 ENC1 SHC4 CKB AZIN1 ENPP2 TEX2 CLTA EFR3A KCNAB2 NDUFA13 ACTB TMSB4X PTN CALM1 VSNL1 TALDO1 CLDN11 GSK3A PRKACB TXNIP GPIHBP1 QKI NFIA MYL6 C11ORF31 RP11-111M22.2 PCDHA4 ABCA8 PRKCB SNAP25 UBA1 RAB2A RPL23A CYC1 VWA1 BIRC5 PGRMC1 HHIP FTL CLMN CTNNA3 PPP3CA FRMD4B ROBO3 ERMN TMEM63A DPYSL2 RTKN RAB7A ATP5G1 COX6A1 FA2H EID1 PLS3 RPS26 RHOB NARS SPCS2 QDPR MTRNR2L6 D4S234E\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "oligodendrocyte A" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: PLP1 HHIP TMEM144 MBP ACTB CRYAB SPP1 TF RBX1 HSPA2 TXNIP ATP5G3 SEPT4 MT-CO2 MT-ATP6 RPL39 PTMA PPA1 THBS2 NECAB1 CLDND1 HHATL PGK1 TLE4 CNDP1 ARL8A CRKL GPX4 LRRC69 APLP1 GLUL PPP2CB MOBP TPPP GPRC5B NPAS3 EIF1 DOCK10 LRP4 HMGCR RNASE1 ATP5I RAPGEF5 APBB1 MT-CYB LDOC1L GAPDH APP MARCKSL1 YWHAG VAMP2 ANLN BSG FSCN1 DYNLRB1 MTPN HINT1 MT-CO1 PET100 MT-CO3 SLC39A10 SEMA3B CADM2 MT-ND5 CLIC4 LMBRD2 NDUFA1 FIGN SYTL2 COX7A2 ELMO1 TMEM88B MYRF DNM3 SLC9A3R1 ITM2B AP2M1 ZCCHC24 NCKAP5 PTRF PRNP TMEM123 BIRC5 EDIL3 WASL TSC22D4 ZDHHC12 ARFGAP2 ALKBH7 MORF4L2 PLIN3 QDPR RAB3B EPB41L3 NKX6-2 RPL37A AIF1L PPP1R14A ATP6V0E2 SLC6A1 PEX5L RTN4 HPN ERBB4 RPL21 CDH13 ZBTB20 NTNG2 CBX6 SPOCK1 FTH1 ANKRD18A SCD HEPACAM CPNE2 CLDN11 CDH8 RAB7A CLDND2 FOLH1 ENO1 TMA7 ADSS GPR37 SLC24A2 MT-ND1 MTND1P23 SUCLA2 ESCO2 PTCHD4 PLEKHD1 HNRNPA1P40\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "oligodendrocyte A" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: PLP1 TF MT-ND2 RAB3B PEBP1 TMEM144 SCD RTN4 RP11-111M22.2 MAP1B GNAQ ENPP2 DNAJC21 MT-CO2 CLDND1 CNP MOBP ITM2B MTND2P28 SUMO2 PRNP SERINC3 PEX5L RPL21 ATP1B1 PDK4 NDUFB10 MT-ND1 MT-ATP6 MT-ND4 NDUFB8 GRM3 OAT PTGDS SEPP1 QKI ZNF385D HSPA2 WASL PMP2 SPARC CBX6 MARCKSL1 SLC1A2 ASPA ZFHX4 CDK17 REPS2 CAMK2G RPS6 TMEM235 RPL13A MGST3 SKP1 APLP2 ESCO2 SLC14A1 CFH TUBA1A MBP KLC1 MAP1A RPL32 NCKAP5 CD44 CRYAB FTH1 DPYSL2 CTSD HINT1 HHATL PPDPF SQLE EVI2A S100B SERF2 MT3 PCDHGA5 FAM127A THBS2 PIEZO2 PIP4K2A RAPGEF5 KAL1 ST18 MT-ND3 TM2D3 TOLLIP SYT11 NFE2L1 MT-ND5 MTRNR2L1 MT-CO3 CTC-575D19.1 PAQR8 NKX6-2 PBX3 LAMTOR5 DNER TMSB10 ZFAND5 ANLN UQCR11 SEPW1 ACTB YWHAB C18ORF32 BIRC5 ATP6V0B EDF1 MTATP6P1 ELMO1 PSMB5 PPP1R14A GPR37 TMA7 EDIL3 ARL2BP SPP1 DNM3 EID1 CYB5R3 CMTM5 ERBB3 RAB40B PVRL1 PCDH17 TMEM151A PCSK5 MT-CYB MTRNR2L12 TNS1 TUBB4A ASAP2 PNMAL1 PJA2 ZBTB20 MYRF RANBP1 NDUFB7 AC244489.1 RNASEK-C17ORF49 HNRNPA1P40 SYTL2\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "oligodendrocyte A" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: PLP1 MOBP MT-CO2 CRYAB PTMA EDIL3 CLDN11 HSPA2 DPYSL2 MT-ND4 CALM2 MT-ATP6 TLE4 ACTB GPIHBP1 DYNLL1 GPRC5B CLDND1 ATP1B1 ATP5I HSP90AA1 TMEM144 RPL7 QKI CNDP1 SNAP25 MBP PDE1C PDK4 TSC22D4 MT-CO3 RPL13 MT-ND3 SEPW1 HNRNPA1P40 TF SERPINI1 HSP90AB1 TMTC4 PEA15 ATP6V0B MEGF10 MRPL51 MTCH1 RPL18A RAPGEF5 LLGL2 RPL37A OST4 B3GALT2 PTGES3 CHADL MTRNR2L12 APLP1 MTUS1 TEX2 PHF11 PHPT1 DNAJC5 AZGP1 CRKL EIF1AX NUAK1 MT-CYB GSK3A EPHX2 YWHAQ DNM3 COX6A1 MORF4L1 CALM3 COX8A ZFAND5 BCL6 C18ORF32 UBC PIEZO2 UBB PLIN3 PRKACB ATP5B ST6GALNAC3 SPOCK3 SEMA3B BIRC5 HHIP SLC1A3 ZFP36 MT-ND1 ENPP2 GRM3 HSD17B3 CD99L2 SLC25A5 ATP5J RPS15 RPL35 CTNNB1 MT-ND2 ZCCHC24 PEX5L MT3 CREB5 PDE1A MAL GPR37 SERF2 FTH1 APP TMEM147 MTRNR2L8 MTATP6P1 ATP6V0D1 SEPT4 NDRG2 MGST3 RNASE1 GSTP1 KCNMB4 OLIG1 PTGDS TMEM88B CDKN2AIPNL ST18 FKBP4 LDOC1L LSM4 ZBTB20 QDPR PIK3R1 MAPRE2 RPL32 MTRNR2L1 RPL26 RNF152 CDC42SE2 NKX2-2 DHCR24 PROX1 ATP1A3 SYTL2 RAB3B TUBB ZNF385D TBC1D15 GTF2H2C_2\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "oligodendrocyte A" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: PLP1 CALM2 ANLN PEA15 TF RNASE1 MBP SPP1 ERBB3 RAPGEF5 CRYAB SALL1 SCD OCIAD1 TUBB2B TUBA1A FIS1 MT-ND4 TUBB4A QKI EIF1 PTGDS APLP1 MRPL20 ATP1B1 JUND ACTB FOLH1 TMA7 ATP6V1A CMTM5 RPS5 SIGIRR APOD COL4A5 RPS19BP1 MARCKS HSP90AA1 FKBP1A PSD3 CFL1 GUK1 NKX6-2 CLDND1 BCAS1 FA2H SLC25A4 PTMA SNRPE CREB5 PPP1R14A DRAP1 GOT1 LANCL1 DYNC1I1 FTL TMEM88B RHOB GLUL EIF1AX DHCR24 PDE1C TMEM144 RAB3B RP11-111M22.2 MAG CFH LRRC59 PEX5L FAM131B AES VAMP2 COX7B COX8A ATP5I SARAF HHATL MAGEH1 SLC24A2 PEBP1 ZBTB20 ISCU WBP2 PRKACB MTRNR2L1 CDK17 C16ORF13 PHF11 CNDP1 PIN1 ATP5J HSPE1 ARL8B MAP1B GRM3 HSPA8 MT-ND3 CDK5 SAP18 SPOCK3 MEGF10 VCAN MT-ND2 SYTL2 EPB41L3 TMEM123 PDK4 MAPK1 NAP1L2 DPYSL2 MGST3 ARPP19 KIF1A UQCRQ ELMO1 TANC1 FTH1 POLR2L ITM2B CYB5R3 ISOC1 SCN2B MTRNR2L6 PRKAR1A NGFRAP1 CALM1 RPL35 PPP2CA NFE2L1 FAM219A COX4I1 TPPP HNRNPA1P40 PSMB3 GABARAP KLC1 MIF RPS10 TBC1D15\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "oligodendrocyte A" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: PLP1 PTMA PTGDS TF ZBTB20 CLDND1 CRYAB ATP5E PPP1R14A MT-ND4 LRP4 SERINC1 OLIG1 MOBP CADM2 RAB3B DPYSL2 SPOCK3 SCD TMEM144 TMCC3 SPTBN1 RTN4 MT-CO2 EIF4A2 LANCL1 SLC24A2 FA2H NDUFA13 CTC-575D19.1 PHYHIPL PEX5L QDPR GLUL ARL6IP5 APLP1 CD63 TMEM88B MT-CO1 SEPT4 QKI PDE1C RP11-597D13.7 MT-ND1 CLDN11 FAIM2 MBP HHIP FAM134A RPS6 ARHGAP35 SAMM50 FAM107B ELMO1 TMEM63A C12ORF57 VAPB SCD5 DLC1 ACTB CNP HMGB1P35 TUBA1A FIGN SNAP25 PLIN3 TPT1 GPRC5B TXN EXTL2 NCOA4 UBQLN2 ACSS1 PRKACB RPL35 WSCD1 MAST3 NTNG2 INSIG1 CXXC4 MT-ND3 HTRA1 MRPL20 TMEM151A RCAN2 RPL7 DYNLL1 HSPE1 RPL10A MT-CYB DNAJB6 GUK1 KIF1A ATP6AP2 RHOB TMEM65 TUBA1B PCDHB4 OLA1 AK5 PPDPF CDC42SE2 RPS3AP12 SRP9 MAG ATRN MTRNR2L1 MTRNR2L12 PFN2 HHATL TIMP2 ZCCHC24 AKAP12 NHP2L1 ITM2B RPS19BP1 HSPA2 UBA52 RPS27A FTL RP11-111M22.2 SPP1 MZT1 STMN1 METTL18 RPL15 KLC1 PPAP2B FTH1 PIP4K2A ATP1B1 CTSD TRIM59 NDUFAF3 PFDN1 LRP1B PAQR8 NDRG3 VAMP2 CD9 CLMN APOD LDOC1 GTF3A AIF1L CA2 CNDP1 MTRNR2L6 C11ORF31 RPL13A PCDHGA5 AC244489.1\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "oligodendrocyte A" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: PLP1 MT-CO3 MBP MTRNR2L1 MT-CO2 QKI RTN4 MTRNR2L12 MT-CO1 MT-ATP6 CDC42SE2 CLDND1 PEBP1 MT-ND1 ARL8A PTGDS SDF2L1 GPRC5B RPS12 APP MAG DNER RPS15 CD9 RPL18A EDIL3 ACTB SSBP3 MT-ND2 SNAP25 MTRNR2L6 SCN4B ZCCHC24 LRP4 SCD5 FSCN1 EID1 ATP5E SOX2 ATRN STMN1P1 ZBTB20 DOCK10 COX5B PSAP TBCB ELAVL4 RPS28 NR1I3 NFIA DPYSL2 SLC22A17 KIAA1755 DCTN1 PRKAR1B ATP6AP1 C19ORF53 CREB5 NDUFAF3 RAB40B ENC1 KIF21A BTBD10 FAIM2 ARL6IP5 CLDN11 YWHAG RP11-404G16.2 MARCKSL1 SERF2 MAGEH1 TLE4 MYRF MRFAP1 GPX4 RPL38 SERINC1 WSB2 ASPA CYCS CALM2 PSMD12 SEPP1 CST3 GLUL NAPA NRF1 MTATP6P1 MTUS1 APBB1 PPP2CA OST4 TMEM123 RPL37A HOMER3 PPP1R14A PRDX3 UBQLN2 PTMA SLC24A2 MAP1A TMEM144 CPNE2 CLTA PAQR8 TSC22D4 REEP5 PPP1CB NDRG2 ACTG1 SPOCK3 JOSD2 HTR2A RPL23A COL9A2 MYO10 GNB1 CLU CFL1 NDUFB3 RASGRF1 ERMN OPCML CALM1 SNX3 GRIN2A TMTC4 SUSD4 RORB GOLIM4 TMEM235 NPTXR SLC1A3 PPP3CA CTBP1 MAP1B RPL26 FASN MTRNR2L8 EPHA6 VAMP2 NDUFA1 FTL SPRYD3 ERBB3 APLP1 CKB HSP90AA1 PKM FRMD4B MT-ND4 HHIP CNDP1 FIS1 SYN2 GDI1 RTN3 CNP CLSTN1 TSPYL1 UBC PGRMC1 ATP6V0C TBC1D15 IDS BIRC5 PGM2L1 RP11-20I23.1 DNAJC21 MBOAT7 TUBB\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "oligodendrocyte A" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: PLP1 TF S100B MBP SEPP1 NDUFAF2 ANKRD18A ZBTB20 SPP1 EDIL3 NUAK1 BIRC5 FTL TMSB4X MAPRE2 SYTL2 RAB3B SKP1 ACTG1 RPL13 TMEM63A PTGDS PPP1R14A FTH1 DNM3 ANLN RAPGEF5 RAB4A ACTB ATP5I DPYSL2 ST18 CRYAB DPY19L1 MT3 EIF1 COX4I1 KLC1 HSPA8 SHC4 FAM229A PCBP1 PEBP1 PELI2 YBX3 S100A6 CLDN11 PDE1C SLC24A2 MAP4 CHMP5 RCAN2 TOMM20 CDC42SE2 MARCKSL1 SLC22A17 SNAP91 OAZ1 PJA2 RPL21 TUBA1A UCHL1 SYT11 PRDX1 NDUFA5 FIS1 ATP6AP2 LAMTOR5 CTSD TNS1 LRRC3 OCIAD1 TUBB2B MAP1B MIR6723 MT-CO1 PIP4K2A TMTC4 MAP2K2 RBP7 SRP9 ETFB EID1 HHATL PPP2CB KIF3C SNX22 NDFIP1 GPR37 CP COL4A5 CALM2 QKI BCAS1 HSP90AA1 RPL15 ATP2A2 RPS12 VWC2L NDUFB2 C18ORF21 ADORA1 TMCC3 HSPE1 NPTXR NUDT21 MT-ND2 NFE2L1 RASGRF1 MORF4L1 AIF1L PRNP NKX2-2 SYPL1 IDS RP11-111M22.2 PADI2 PCDHGA5 SARAF APLP1 SCD GLDN PLIN3 PLEKHG1 MT-CYB COX5B NDUFB4 MAL PSD3 PSAP WASF1 JOSD2 CLMN MOBP TERF2IP SPOCK1 MAF CALM1 CLDND1 PRKAR1A TLE4 S100A1 NHP2 NGFRAP1 NUPR1L NDUFV1 EIF5A2 PDGFRB SALL1 PREPL ARHGAP35 VDAC3 SCD5 FAIM2 POLR2L ATP5F1 ATP6V0E2 PEA15 MAG TSC22D4 RPS28 RPL32 WARS LGALS1 ITFG1 GPX4 MIF CD9 CORO1B RPL7 RP11-20I23.1 ATP6V0C DNAJC21 TBC1D15\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "oligodendrocyte A" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: PLP1 MBP TMEM144 TF ZCCHC24 PTMA SEPW1 CRYAB CYP27A1 ATP6V1E1 SPOCK3 RTN4 ST18 SEPT4 PVRL1 TMSB4X EPB41L3 EPS8 MSMO1 INSIG1 DPYSL2 SEPP1 PRKACB RABAC1 S100B RPS5 ACTB LRP2 EIF1AX NARS RPS26 RTN3 CHN1 SLC24A2 ABCA8 TCEB2 NDUFB8 TUBB2B GABARAP CLTC PPP2CB FBXO2 SLC22A17 PIP4K2A CLDN11 PTRF COX6A1 STUB1 YWHAB HSP90AA1 RPS15 RPL39 LMBRD2 PSMC5 MCM5 FTH1 GAPDH RPS28 MTPN MAP1LC3A ATP5E JUND CLDND1 TSC22D4 ATP9A TIMP2 PEBP1 PROX1 PEG10 RPL35 HSPA2 RPL31 MAGED2 PTGES3 CHCHD2 CARNS1 ALCAM BCAS1 NDUFA1 MARCKSL1 KIF1A CLSTN1 FIS1 RPL37A MORF4L1 SPTBN1 MT3 SRP14 S100A13 NHP2 TPD52 MT-CO2 AC011043.1 AK5 UBE2M SPOCK1 ZBTB20 APOD NDUFA13 MAG RAPGEF5 GLUL EDIL3 DYNLL1 RAB6A SLC31A2 CTC-575D19.1 MAP1B THBS2 EVI2A ASPA PTGDS MOBP EIF4A2 RAB40B TMEM63A BLOC1S1 EID1 ACAT2 PEA15 STK39 RPS10 PGK1 RPL21 IDS RAB3B ZNF385D SYTL2\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "oligodendrocyte A" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: PLP1 MT-ND3 TMEM144 SCD MT-CYB MBP NFIA CLDND1 MT-ND4 SPOCK1 MOBP RPL3 TF OR6D1P SERF2 COX4I1 RP11-111M22.2 MT-CO3 PIP4K2A SLC22A17 MTRNR2L1 SPOCK3 ERBB3 MT-ATP6 PRKACB RPS26 COL4A5 CNP SPP1 SOX2 ITM2B CALM1 PAQR8 PTGDS SLC24A2 SEPT4 PSAP CREB5 RCAN3 C12ORF49 ZBTB20 PCMT1 ATP1B1 SNRPN RBX1 SMOC1 FTL POLR2J RP11-597D13.7 RPL23A RPS2 PRKCB ABCA8 PPP2CA EPB41L3 PTN PSMA7 MT-CO2 PEPD VWA1 FTH1 APLP1 ZFHX4 HINT1 RASSF8 SGCD SNX3 MAP2K1 DYNLL1 THBS2 RPL13 FIGN FAIM2 AGT ATP2A2 MAP1B GPRC5B C1D ATOX1 RPS10 CA2 TXNIP GRM3 MAG MTRNR2L12 OLIG1 SEPP1 SQLE SPARC TMEM123 IFI16 CTNNA3 NAT8L TTYH2 GLDN YIPF3 QKI PAFAH1B2 PRNP FA2H DNER EPS15 CTNND2 MORF4L2 SEPW1 NARS APP DNM3 HSP90AB1 NACC2 BRK1 PTMA PDLIM5 CD63 AP2B1 BCAS1 EIF1 TMEM258 RPL26 EDIL3 CLDN11 PPP1R14A AK5 RTKN POLR2L QDPR CLMN PDE1C UCHL1 PPP3CA MTRNR2L6 PLEKHD1 PPIA AC244489.1 TBC1D15 DNAJC21\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "oligodendrocyte A" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: PLP1 CLDND1 MBP RPL13A TRIM59 HNRNPA1P40 CTSD GPR37 RP11-111M22.2 ANLN RAB3B TF GLUL PHB PSD3 SYT11 ENPP2 CD9 MT-ATP6 SPP1 MT-CO2 MOBP ATP5I CFH DPYSL2 ATP5J ZBTB20 ABCA8 PRUNE2 TUBA1A FIS1 OCIAD1 PIK3R1 ERBB3 QKI SAMM50 HSP90AB1 RPL3 NDUFB7 SCD NDUFB1 ATP5B RPL11 JUND MAL RTKN RTN3 KIAA1755 APLF NFIA ATP6V0B STAG3L5P RGCC BLOC1S1 CYB5R3 FTH1 YWHAZ ALKBH7 AP1S1 OLIG1 FKBP4 PCDHA10 CREB5 TMCC3 GRPEL1 RPL35 SKP1 CLSTN2 COPS7A UQCR11 KIF1A LDOC1 ACTR1A UBE2D2 RPS10 HSP90AA1 PFN1 APP TSC22D4 CLMN TTYH2 TMEM144 SEPP1 MT-ND1 NACC2 RPS27A UBA52 BCAS1 SLC24A2 COX6C ST18 RTN4 HTRA1 CLDN11 FAM96B FOS MTUS1 CNDP1 TWF1P1 RPL21 SCD5 ATP5E PDE1C MT-CO1 UQCRB TBC1D15 PCDH17 ATP1B1 RAPGEF5 CA2 CARNS1 RPS6 MT-ND3 UBC ANGPTL2 SPOCK1 RPL18A ASPA CFL2 APOLD1 AZGP1 CRYAB SNAP25 IDS PTCHD4\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "oligodendrocyte A" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: PLP1 MT-ND3 MBP MT-ND2 DNAJC21 SCD RPS27A APLP1 MT-ND4 RTN4 ANKRD18A SYTL2 RAB3B CYB5R3 CLDND1 RAB6A MT-CO1 QKI EDIL3 MT-ATP6 TF FTH1 NACC2 RP11-597D13.7 MT-CYB DHCR24 CRYAB SNX3 ERBB3 EIF1AX TMEM144 PEX5L DOCK10 MT-CO3 DNAJC6 PLIN3 TBC1D15 TBCB APOD MORF4L1 CCDC85B SPP1 TUBB4A YWHAB CD63 HHATL RPS5 CREB5 MT-ND4L AP2B1 RPL31 ITM2B BLOC1S1 OPCML SPARC CAPZA2 PTGDS AZGP1 C1ORF105 LANCL1 NUAK1 C18ORF32 PTMA SLC22A17 CNDP1 GNAQ SLC39A10 TTYH2 RHOB SKP1 NFIA TSC22D4 PDE1C TOMM20 RAP2A PROX1 ELMO1 LINC00116 PPDPF CHADL SEMA3B RAB7A CHCHD2 CLDN11 CFL2 HEPACAM PPP1R14A CALM1 GPR37 TMEM63A NDRG2 FSTL5 MFSD6 ATP5G3 APBB1 UQCRB CLIP2 MTRNR2L1 MTCH1 DPYSL2 S100B THBS2 SPTBN1 MRPL20 MFSD2A ATP6AP2 KCNJ10 SPATA13 MOBP TPPP GPX4 NCAM2 MTATP6P1 ZNF536 SEMA5A QDPR SPCS2 ARL8B PSAP MTUS1 FAM107B APOLD1 HEG1 LGI3 SPOCK3 MAP1B SARAF GUK1 SLC24A2 SOD1 CLMN ENPP2 JUNB TUBA1A SH3BGRL3 CNP GLUL PRUNE2 PCMT1 HSPA4 PPIA OAT EID1 VPS35 NDUFB10 HSP90AA1 RP11-111M22.2 UROS MT-ND1 MTRNR2L6 PCDHA10 CFH MIF NR1I3\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "oligodendrocyte A" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: PLP1 MBP TF PTMA SEPP1 NECAB1 CALM2 HHATL QKI DHCR24 HSP90AA1 MARCKSL1 RPL26 STMN1 CNP MOBP BCAS1 PEBP1 PTGDS COL4A5 FOLH1 COX6A1 TMEM144 S100B SCD GLUL RAPGEF5 MTCH1 GPR37 TGOLN2 SPP1 GLDN PRNP ITGB5 ACTB GPX4 APP CCDC25 TBCB NHP2 KIF1A SPARC SPOCK3 STMN2 PCDH17 CHCHD2 LDOC1 NDUFA2 RASSF8 OLIG1 PAQR8 CFL2 RPL15 MT-ND3 CRYAB PRUNE2 EGFR RPL38 TMEM63A TKT RHOB TSC22D1 CREB5 ACTG1 JOSD2 OCIAD1 MT3 ANKRD18A MAPRE2 RTN4 NDUFB2 DOCK10 UQCRB GNAQ MFGE8 PDE1C ETFB C20ORF24 UBC WASF1 IQSEC1 KIF21A PEA15 RPS6 FTL PGRMC1 SKP1 POLR2I ALDOC GABARAPL2 CLPTM1 ADARB2 B3GNT1 APOD EIF1 PLIN3 AP2M1 CLDND2 ERBB3 LANCL1 TTYH2 PRTG C7ORF50 MAPK1 RPS28 MTRNR2L1 RABAC1 OPA1 ATP2A2 CSRP1 MSMO1 LAMA4 FKBP8 PDE1A PPAP2B BIRC5 MT-ATP6 THEMIS2 SPTBN1 RPL36A VAMP2 APLP1 PFDN1 CLMN ELMO1 TPD52 MAPRE3 TM2D3 CLDND1 TUBB4A ITM2B PPP2CA SPOCK1 ATP5I MT-ND4 NDUFA11 MZT2B TMEM88B DYNC1I1 TRIM59 GABARAP ATP6V0C RP11-20I23.1 SYTL2 ZNF385D MIF GTF2H2C_2 RAB3B\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "oligodendrocyte A" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: PLP1 MT-ND4 MT-ND3 RAB3B MT-CO2 TMEM144 CLDND1 MBP SPP1 QKI MT-CO1 FRMD4B HHATL MOBP TXNIP APLP1 GAPDH ACTB MTRNR2L12 ZBTB20 TBC1D15 TF TTYH2 SLC24A2 GPRC5B DNAJB6 PFN2 OAT HSP90AB1 CLU CNP CHMP4B RTN4 RPL21 ETFB APP SCD5 PTMA ST18 MT-ND1 CALM2 FTL TUBA1A SERINC1 ACTG1 PIP4K2A PPA1 THY1 EDIL3 MTCH1 MT-ATP6 PEX5L RTN3 MT-CYB B2M NAPB HSP90AA1 EIF1 TKT PRKAR1A TUBB4A ZNF385D RPS15 PREPL UROS NAA38 ARL8A HTRA1 CLMN NDUFA5 MT-ND2 CORO2B SARAF SPOCK1 CFL2 RAB2A PDE1C CLIP3 DNER ZFHX4 SHC4 YWHAG RP11-597D13.7 MT-CO3 GPIHBP1 MTUS1 PRKACB MYRF COL4A5 STMN1 LANCL1 BEX1 ITFG1 SEPP1 PTGDS PJA2 SKP1 DLD PGAM1 VPS35 HEPH PPAPDC1A COX6B1 ITM2B APOLD1 ZCCHC24 NKX6-2 MTX3 PLIN3 DPYSL2 SOX10 GUK1 APOD SYNJ1 COX5B SEZ6L2 ATP6AP2 GDE1 AZGP1 FA2H NDUFA13 PPM1A CSRP1 ARPP19 ABCA8 AP1S2 GLUL LRRC69 TLE4 C12ORF49 ARF1 NFIA RPS27A CTSD POLR2L WDR47 ELMO1 RASSF8 ATP1B1 TMEM141 CALM1 ATP6V1E1 RASGEF1B UBQLN2 SNRPN NDUFC2 RPS12 AIF1L SCD NDUFB7 TLN2 EPS15 SMIM13 MTRNR2L8 MT-ND5 CRYAB RSL24D1 PGK1 PRUNE2 FAM107B SEMA3C RELL1 PPIH TBCB MAP7D1 MBOAT7 PPDPF PAFAH1B2 TRIM59 IDS ESCO2 SPCS2 RPS26 RPL36A ATP1A1 DNAJC21 HNRNPA1P40\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "oligodendrocyte A" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: RTN1 SYT1 CLU CALM1 DPYSL2 SNAP25 RTN3 PRNP CHN1 ENC1 PTGDS SPARCL1 MT-ND4 ATP1B1 ITM2B PSD3 ARPP19 NPTN DNAJA1 GLUL SARAF PLP1 HAPLN4 TMEM59L PEA15 ATP2B2 MT-CO1 MAP1B TUBA1A FTH1 MT-ND2 TUBA1B RPL11 YWHAB SCN3B MARCKS HSP90AB1 NDRG2 SEPW1 MAPK1 SYNPO C14ORF2 NCAM2 CST3 CPE TUBB4A FBXL16 ACTB MAP4 MAP2K1 GPM6A MT-CO2 PRKACB FAM127A EIF4A2 NAPB FTL COL5A3 NDFIP1 FAIM2 YWHAG CSDE1 FGFR3 ATRN NDRG4 MT-CO3 PGAM1 SLC12A5 CLSTN1 PRKAR1B CALM2 VSNL1 PACSIN1 GNB1 LPPR4 TPI1 ATP6AP1 FXYD6 CKB ATP1A1 RPS27A PSAP MT-CYB ST18 GABRA1 MTRNR2L1 AP1S1 PNMAL2 EIF1AX RPL35 ZCCHC17 MTRNR2L8 RAB3C KCNA2 PTMA MZT1 PGM2L1 TMEM88B CHL1 AP2M1 EPHB6 TRIL SCOC NREP NCALD ARPC4 ATP6V0C PPA1 ATP5F1 SYT13 SLC39A10 ACTR10 SCG2 LAMP5 ATP6V1A RASGRF1 THY1 SLC7A1 GPR98 MBP PPP3CA CLPTM1 RAP1GDS1 NDUFV1 NDFIP2 CD99L2 ZFAND5 COX6A1 CDKN2AIPNL AK5 RPL37A KCNK1 ATG101 LDHB GLDN COX7A2 RP11-20I23.1 CLIP2 MYRF TESPA1 HSP90AA1 TSPYL1 OXR1 SLC17A7 HEPN1 UCHL1 NDUFB2 MTPN CDC42SE2 RPL41 KCNV1 ELAVL4 MFGE8 ACLY ARL6IP1 BSG DUSP6 DCTN1 ATP1A3 VAPB PLS3 FIS1 UQCRQ SYT11 DKK3 LMO4 UBL5 ATP5A1 STMN3 SYNJ1 ATP2A2 SLC22A17 ALDH1L1 PRDX1 YWHAZ GABARAPL2 PTK2B UQCRH ARL6IP5 MRFAP1 PKM RSL24D1 ZNF365 C19ORF53 PRUNE2 SLC1A2 ARHGAP35 PPP2R1A EPHB1 EPS15 NCDN SULT4A1 PGK1 PPP1R14A KLHL5 ENO2 BIRC5 TPPP COPRS RASGRP1 NEGR1 SEPP1 VSTM2L PDP1 ATP1A2 NAT8L ITM2C TLE4 ATXN10 CD63 ATP5E JOSD2 ANAPC11 PEBP1 FAT3 DNAJC6 PIK3R1 NDUFA1 PJA2 PPP3R1 FSCN1 MTND1P23 MT-ND1 MTRNR2L12 RGS4 VIM RPL15 PAFAH1B2 DYNLL1 TRMT112 OLFM2 TSPAN7 RTN4 WDR47 ITFG1 STX1B TOLLIP MRPL52 PHYHIP CLIC4 BAI2 HINT1 CACNB1 GRIN2A SLC1A3 GUK1 PCDH8 UBE2V2 SLC30A3 RPL32 TUBB2A PPP3CB GPX4 COPS8 HHATL COL6A1 KIF5A MEGF10 HSPBP1 LDB2 KCNMB4 SLC25A4 KLC1 PEPD UQCRB PCMT1 TMSB10 APLP1 SV2B CREG2 AQP4 S100B ANXA7 NSF ACSS1 LINC01314 GNAQ SNRPN LINGO1 MTRNR2L6 RPS12 GABARAP RNASEK-C17ORF49 TUBB3 MIF TUBB HNRNPA1P40 RAB3B SYTL2 GTF2H2C_2 PCDHAC1 PCDHA9 PCDHA10 PCDHA4\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "oligodendrocyte C" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MT-CO3 MT-CO1 MT-CO2 MT-ATP6 MT-ND3 MT-CYB MT-ND4 MT-ND1 MT-ND2 CHN1 MTATP6P1 CKB PLP1 MTRNR2L12 ENC1 ATP1B1 SSBP3 EIF4A2 SLC1A2 CLU CALM3 CADM2 OLFM1 VAMP2 ZBTB18 ATP9A ARPP19 MTRNR2L1 KIF1A ENPP2 LMO4 DPYSL2 PNMA2 ACTG1 PHYHIP CSDE1 TUBA1B NPTX1 RTN1 CLDND1 RPL41 SPTBN1 GJA1 NAT8L RFK WASL NGFRAP1 TMEM59L HSP90AA1 RPL38 CLSTN1 CTSD OXR1 SCN3B MLLT11 CSRP1 PTGDS ARL6IP1 BEX1 FTH1 SLC17A6 PSAP SLC24A2 CAP2 YWHAH RPH3A PITHD1 TPI1 FGFR3 PPIA CALM1 PTK2B SCOC KCNA2 SPOCK1 NRGN TMSB4X MT-ND5 JUND MTRNR2L6 FKBP8 PRKAR1B SNAP25 CNTN1 OCIAD1 COL5A3 ZFAND5 TCEAL2 TP53I3 NEFL IDS TF PPP2R2C RPL12 CAPNS1 LANCL1 ATP13A4 SYT1 HSPBP1 DIRAS1 QKI RAB31 PTPRZ1 TTYH2 UBC FIS1 GABRA1 CLMN LINC00116 PRKACB FBXL15 UBA1 SYT11 PPP3R1 VAMP5 CNP STK39 RPL11 PTMA BSN SNX10 C1ORF115 ZBTB20 ERBB3 SCN1A AP2B1 VSTM2A PDE9A CYCS WDR47 PIP5K1B FAT3 SLC25A11 COX7A2L TESPA1 IPCEF1 CARNS1 STX1B NCALD DHCR24 ITFG1 TPRG1L RPL37A TMEM88B NDRG2 SYNJ1 GUK1 YWHAG PLCB1 PEBP1 TMX4 CPE GLDN MGST3 HSP90AB1 RPL35 LGI3 GOT2 IGSF21 WASF1 CEND1 PLEKHH2 RPL26 MTUS1 MARCKSL1 KLC1 CAB39 TMTC4 GPX4 UQCR10 EVI2A ISCU HHATL GDI1 OPRM1 GHITM ADCYAP1 NINJ1 SEPP1 MTCH1 SYNPO MAP1LC3B HPSE2 TUBA1A RTN3 ALDH5A1 KIF3C BAALC TSC22D1 UBE2QL1 MTPN SEPW1 LINGO1 ATP6V0E2 SPCS2 MOBP GABARAPL1 C12ORF49 GPR6 EIF4G2 UHMK1 NECAB1 RPL21 BEX2 SEMA3B CDK5R1 CFL1 COL9A3 CERS6 ACTB CREG2 TMOD2 ENSA SOX2 SV2B MPC2 OAZ1 NGRN RHBDD2 CDK5R2 ACSS1 BIRC5 TCEA2 PFDN4 CHMP5 SLC6A1 CDKN2D SLC9A6 NPTXR SCAMP5 IQSEC1 MRPL51 DYNC1I1 PITPNA SERPINI1 SLC17A7 SNCB NKX6-2 COA3 PCDHB2 SNRPN MTRNR2L8 RGS12 SEPT4 FBXO2 NUDT21 PDP1 TUBB2A CDHR1 MORF4L1 UQCRH RPL13A WARS STMN2 CA11 CXXC4 ATP6AP1 BASP1 PLEKHG3 TUBB2B TSC22D4 PPP2CB RPS28 CMAS PREPL DOCK10 BCAP31 RORB ACTR6 RPS4X PPP3CA STUB1 MAP1A RCAN2 CPLX2 GPM6A TSPYL4 NXPH3 RAB11A APOD C11ORF96 SDC4 MAP1B PFN2 RAP1GDS1 ZNF319 TMEM230 NRCAM TMEM191A NDUFA11 NSF PVRL1 RHOB AES SARAF NCEH1 CLDN11 KLHDC3 VAV3 NCDN YWHAZ COX4I1 PGK1 CX3CL1 UBL4A DNM3 ARF3 GAP43 NDUFB11 PRRX1 C1ORF52 HMGCS1 AK5 NDRG4 GUCY1B3 MYRF AP2M1 TBR1 ATP1A2 DMTN NDUFS5 MT-ND4L YJEFN3 HEPACAM SPRN HNRNPA1P40 NUDT4 ALDOA RAB3B SERF2 SYTL2\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "oligodendrocyte C" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MT-CO1 MT-CO3 MT-CO2 CHN1 MT-ATP6 SNAP25 MBP TUBA1B SYT1 RTN3 CCK MT-ND4 MT-ND1 CALM3 MTRNR2L12 MT-ND3 YWHAB SCN3B NRGN MAP1B PRKCB MT-CYB AK5 PSAP ACTG1 ATP6V1E1 SCN2B GMFB ARL6IP1 EHD3 STMN2 FAM127A PLP1 MT-ND2 CREG2 CA11 TPPP SLC30A3 PPP3CB YWHAH ITM2B ITFG1 RAB6A CALM2 CAMK4 ETV1 TSPYL1 KLC1 NCALD PREPL EIF1AX SYN2 CLSTN1 GAP43 DPYSL2 CAPZA2 GPM6A VAMP2 SLC17A7 OAZ1 HPN CLU IDS MORF4L1 GCHFR PEBP1 PPP3CA DKK3 BDNF ZNF425 EPS15 SUB1 UBE2M TUBA4A PNMAL2 NFIA SEMA3B NDRG4 RPL36A RPL17 NCEH1 NUAK1 BSCL2 NPTXR ATP9A CFL1 KIAA1755 NGFRAP1 LYNX1 DCLK1 CNTN1 SGK223 ACTB SNX10 MTPN TRIM36 PHYHIP CTNNA3 CA2 RAP2A ALDOA SERPINI1 NAT8L DNAJC6 SKP1 NHP2L1 MAPK1 KCNAB2 PDP1 LGALS1 RNF11 PRNP SLC1A2 RTN4 KIF1A ERBB3 PAK1 DDN YWHAZ SNAP91 ELAVL2 SKAP2 BTBD10 KIF5A HSP90AB1 NDUFB1 GDI1 RAB3C CD99L2 DMTN RAPGEF5 RPL37A RTN1 RAB31 UQCRC1 MAPK8IP2 INPP5F MTRNR2L1 ST18 ERH CTSD SULT4A1 MOBP FGF12 MTRNR2L8 NUTF2 TOMM34 C1ORF115 COL9A1 FOXP2 COX8A ELAVL4 KIF21A ATP1B1 TLE4 NEFH DHCR24 PNMA2 CA10 PGM2L1 NCAM2 ARF3 NPTX1 POLR2L FOLH1 BEX1 COPRS TMEM35 COX7B PKM PPP1CB VDAC1 ZBTB18 UQCRH LDB2 ATP6V1C1 PRKCG SLC22A17 MYL6 FBXL15 MAP1A PRELID1 CEND1 CLIP2 ARF1 VSTM2L PCMT1 SYNGR1 SPOCK1 KIF3C MPPED1 MDH1 PLD3 TOX3 OPRK1 CDH13 RGS4 PI4KA RHEB TOMM20 RPL13 CERS6 UHMK1 VSNL1 PTPRN GAPDH DYNLL2 HOPX BAG4 TMEM144 CALM1 OXR1 MAP2K1 SLC2A1 RFK ATP6AP1 RPH3A NEFL CKB FTH1 TBR1 THY1 RAB2A SARAF PPP3R1 SEMA3A PGAM1 TUBB3 MTRNR2L6 NSF ATP6V1G2 PLEKHD1 HNRNPA1P40 TBC1D15 AC244489.1\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "oligodendrocyte C" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: PCDHGA5 MTRNR2L12 ZNF385D MT-CO2 ZBTB20 VCAN PTPRZ1 MT-ATP6 CFH SPOCK3 MT-CO1 SOX6 MT-ND2 TXNIP DRAP1 MT-ND1 NDFIP1 CLSTN1 SCD5 NFIA MTATP6P1 MBP PDE1C CPLX1 ONECUT1 PGRMC1 FIGN PSAP UBC TOMM20 RPL31 ATP2B4 B3GALT2 TSPYL1 LRP4 BCAT1 MT-ND5 ATP1A2 OPCML MTUS1 MTRNR2L8 PTPRN2 CNTN1 RP11-111M22.2 RTN3 ATP1B2 C1QL2 ASAP1 ALDH5A1 CCND1 NPAS3 NDUFB3 YWHAG CREB5 SMIM12 CAMK2G MTRNR2L1 PTGES3 PID1 PCBP1 APOD MOXD1 ATP5E TMEM59L GPRC5B WBP2 UBQLN2 MT-CYB CALM1 CLU KCNK2 DNER GRAMD3 DGKG GLUL RRM2B RGCC HSP90AA1 GTF3A ENO2 COL20A1 COTL1 MT-ND3 CD63 ALK RPS19BP1 KIF1A CTBP1 PPP3CA GPR56 SERPINE2 ALCAM SOX4 B3GNT1 NARS LUZP2 CADM2 ERBB4 ATP6V1C1 NCKAP5 CHN1 ITM2B LRP1B SUMO1 CAMK4 ATP1B1 PPFIBP2 SLC1A2 MT-ND4 GAD1 PLEKHH2 OR6D1P LGI2 CHL1 SCN1A GDI1 ITPR2 RPL18A PSMD12 PAFAH1B2 MT2A PPP2R2C RTN4 RAB7A HIF3A TCEA2 SYTL2 RAB3B CD59 RPL13A GTF2H2C_2\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "oligodendrocyte precursor cell" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: TMSB4X CHN1 PEBP1 PRNP ARPP19 HSP90AA1 TF MT-CO1 PTGDS MAP1B SYT1 HSP90AB1 PSAP GLUL MT-CO2 NRCAM CALM3 SKP1 SNCB ARF3 VCAN CALM1 SLC39A10 CLU PGM2L1 LGI2 RPL26 CADM2 PRKCB MBP OR6D1P SLC2A1 LMO3 MYRF SLC17A7 PDGFRA COX6C IFI6 AP1S1 NPTXR ATP1B1 TMSB4XP4 TUBB4B PLP1 IQSEC1 HEY1 DHCR24 PRKAR1A VAMP2 CHGB RAB3A AKAP12 TSPYL1 TPD52 SCD5 PDE1C DNAJC5 ATP5J2 SLC38A1 MTCH1 PGAM1 TRAPPC1 GPR56 YWHAG H2AFZ RTN4 MKX EIF4G2 ARF1 EFR3A DOCK10 PMP2 BEX2 ERBB4 KCNS3 APOD IMMP1L NDUFB11 CCK SV2B COX7A1 THBS2 ATP1A2 SLC22A17 GDI1 MFN2 OAZ1 PHPT1 BNIP3 SYN1 NECAB1 RAB31 SPOCK3 FTL STMN2 NGFRAP1 TNNT1 PPP3CA COX8A TCEB2 RPL37A MT3 SYT11 ATP6V1F PFKP TLE4 CLSTN1 TMX4 COPRS EDF1 PACSIN1 PLCB1 NAP1L3 UQCRB ENC1 MT-ND3 UBB RTN3 PPP2R2C MTRNR2L12 RPL23A HMP19 MRPL12 COL20A1 TMSB10 CORO2B TUBA1A DPF3 ZBTB20 LYNX1 MARCKSL1 PMEPA1 PPARGC1A VSTM2L GRM3 SEZ6L2 NDUFA13 RPL8 ARL6IP5 OLIG1 NAA38 DNER FAM3C NAPB PIN1 GNG3 UBQLN2 KIF21A CALM2 SULT4A1 SPARCL1 SCAMP5 SH3RF1 HPRT1 MTG1 NCKAP5 PPP1CB PRDX5 HS6ST3 ITM2B CSDE1 POLR2K KCNMB4 AC244489.1 BEX1 SUCLA2 RPL15 ARL6IP1 YWHAB TMEM200C PJA2 EID1 NDUFAB1 FAIM2 RPL31 STRAP LAMTOR1 FAM174A HMGCR SCN3B PKM RPL3 GUCY1B3 MAP2K4 ATP9A C19ORF70 B3GNT1 PSMA7 LMBRD2 NKAIN4 RAB3B SYTL2 ATP6V1G2 NGRN ARF5 NSF BSCL2 BIRC5 RNASEK-C17ORF49 DNAJC21 TBC1D15\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "oligodendrocyte precursor cell" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: PTPRZ1 VEGFA GPM6A RAB3IP ACTG1 RP13-492C18.2 SCD5 PPAPDC1A TMEM147 CLU MT2A SULF2 VCAN EDIL3 PROM1 SYT11 GNB1 TUBA1A CPE RPL13 COX6A1 ACTB VPS35 GADD45B TPI1 BCL6 PGK1 RPL12 TSC22D1 PTGDS STMN1 SLC1A2 CHCHD2 MT-CO2 HTRA1 FBXW11 CFH EIF1 SPOCK1 AC011043.1 ACLY ITM2C CAMK4 ARF5 MTG1 UQCR10 LMO2 MGST3 ZFAND5 FKBP1A CAMK2D ADAMTS9 ASAP1 EIF4A2 CCDC85B OPN3 CKB PPIA SPCS2 TMSB4X APP CLTA OLFM1 OLIG1 UQCRC1 FXYD6 COPS8 APOD RTN3 SLC39A10 CDK5R1 COL9A1 RAMP1 PPP2R2C THBS2 SLC7A1 PDK4 ENO1 SLC25A4 HDLBP TRIB2 IQSEC1 RPL37A ATP5G3 PNMA2 SYT1 NDRG4 GABARAP PREX2 DDAH1 BCKDK GPCPD1 RPL7 SSTR2 CLIP3 HSP90AB1 PSMA7 GPR56 PDGFRA ATP6V1B2 SPARCL1 CRTAC1 TMEM35 RPL32 GAPDH YWHAG C14ORF2 CISD1 PRKCG QKI CST3 NDUFAB1 MT-ND5 PJA2 TANC1 FAM84B ADAMTS1 KAL1 CLSTN1 CEND1 PPAP2B C4ORF3 GFAP CPNE8 PMP2 RPL23A FABP6 ATP6AP2 CDC42SE2 CALN1 C7ORF50 NXPH1 CNDP1 MRPL20 MAP1B PLTP RHOB RPS27A CHN1 GFRA1 VAMP2 RPL26 SOX6 UBL4A GRIK3 CREB5 NDUFA4 CARTPT ATP1B1 SNX17 C19ORF43 MYL6 CSPG4 ADM NDUFC1 ARF3 CREG2 TUBB4B PFKP JAKMIP1 CYCS ID2 RAB7A ATP5G1 RPL17P50 F3 ZBTB20 TMX4 SRP14 DRAP1 PLCB1 RP11-111M22.2 TOMM7 NDUFA1 B2M CMPK1 PCMT1 RASGRF1 SNAP25 EPB41L3 RAD23B SLC38A1 ATP2B4 NRCAM TIMP3 CHL1 ATP2A2 HPRT1 TMEM59L APOE SOX21 MARCKS KCNA5 FGFR3 NHP2L1 CALM1 SRM NPAS3 AES FTH1 ATP5I CTDSP1 SLC22A17 JUND LIMK1 FAM84A RAB3B SYTL2 ZNF385D RP11-219A15.1 PLEKHD1 GTF2H2C_2 PCDHGA6 PCDHGA10 PCDHGA5\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "oligodendrocyte precursor cell" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: PTPRZ1 MT-CO1 VEGFA MORF4L1 ZBTB20 RPL13 APOD OAZ1 DNAJB9 RPS2 OLIG1 ALDH5A1 CKLF MT-ND3 ANAPC11 SEMA5A NDN TMSB10 DNER ZNF385D RAB3B PDGFRA COX6A1 SERINC1 CD63 OLFM2 YAF2 VCAN ATP1A2 COL6A1 CPE RPL36A PPP2R4 RTN4 GHITM MAPK1 BANF1 KLC1 BEX4 ATP2B2 MT-CO2 SYT1 APOL6 CALCRL TMX4 MAP1A SCN1A GPD1 BAD CFL1 NDUFS6 CALM1 RPS27A SLC40A1 LMO4 STMN1 ETFB PCBP1 GFRA1 NTNG1 C1QL1 LAGE3 PPIA DPYSL2 MT1E NGFRAP1 BAALC KCNA5 RPS3A UCHL1 PEG10 SEZ6L PTN APP ITM2B FOS PCDH17 GPM6A NTN4 RAB3IP NOP10 MT-ND2 RPS15 TRAPPC1 FAM131B COL20A1 CAMK4 NKAIN4 STRAP COL4A5 NHP2L1 TBCB POLR2J PRDX1 PREX2 SPATA13 PRKACB RPL10A AP1S1 RAP1GAP2 ARPC5L VSNL1 JUN EIF1AX CST3 NFIA RPL41 NDUFA13 ATP1A1 FTH1 ACTG1 OPCML DYNLL1 CHMP4B ITFG1 LRP1B MT3 SCD5 PRSS3 C19ORF10 IFITM3 TUBB2B SOD1 TMEM59L PSAP GRIN1 COX7C NPAS3 FAM84A CLU RAB2A RPH3A GADD45B VDAC3 PCDH19 CACNG3 TSPAN7 QDPR MT-ATP6 KCNA2 DDN KLHL5 NDRG2 RHOA SYN2 RPL8 SLC7A5 NNAT OPA1 MT-ND4 RAP1GDS1 KCNAB1 HS6ST3 ELAVL2 CTBP1 SYT3 PSMC3 ELMO1 CLEC2L RPL18A DNM3 H2AFZ ARPP19 NDUFC2 IL3RA ERBB3 NDUFB7 ZNF174 SCN3B IFI6 MT-CO3 NGRN B2M DNAJC21 ALDOA TBC1D15 MIF RPL7 PLEKHD1 HNRNPA1P40\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "oligodendrocyte precursor cell" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MBP MT-CO3 PLP1 PTPRZ1 SYTL2 ADAMTS1 KIAA1755 SOX6 MT3 TBC1D15 MT-ND3 SCD5 MARCKS CD99L2 MT-CO1 DUSP1 ZCCHC24 ZBTB20 SLC1A2 ZFHX4 RPL31 PCDHGA10 PID1 MT-CYB SNAP25 EDIL3 OLIG1 TF PCDHA4 CST3 SPARCL1 FERMT1 SLC38A1 MRPL52 RAB40B MTRNR2L1 BRK1 ENPP2 RPL41 EFR3A MT-ND2 PRNP SLC22A17 C19ORF43 C14ORF2 UBQLN2 DLC1 RAB34 SYT11 RPL13 COX6A1 COX6B1 ACTB ACTG1 ATP1A3 MEGF11 PTMA C1QL2 KLC1 NXPH1 CNTNAP5 GPM6A GAPDH PPAP2B PDLIM5 UBL5 MTRNR2L12 RPP40 COMMD6 TOMM34 PLCD1 RAB3IP LHFPL3 ARL8A CLDND1 NFIA TMEM200C NDUFS5 MT-CO2 PPP2R1A CHMP4B APP TPPP MT-ND4 TMA7 FTH1 ATP13A4 RPS4X CAPNS1 MT1X TMEM88B USP5 SPOCK1 TSC22D1 MAL ARL6IP1 RRAGA GRIK1 ATP1B2 TXNIP CFL1 MT-ATP6 CALCRL MOBP UCHL1 NPAS3 MEGF10 COL9A2 TMTC4 OLIG2 STMN1 CNP NDUFC2 VCAN FIBIN SLC25A5 ATOH8 CALM2 KIF7 MTRNR2L8 NDRG2 RPL35 COX17 RHOA RPS28 RP11-111M22.2 CPE CLTA SRP14 ATP1A2 ST18 ARMC3 PTGDS TSPAN7 NUDT13 STXBP1 TUBB4A ATP6V0E2 PRKAR1A WIPF1 DPYSL2 CLU DYNLL1 TMEM151A VAMP1 PCDH17 CLIP2 MAST3 CTGF LRP1B SLC7A5 NR4A1 ATP2B4 CYB5R3 COL9A1 CA11 QDPR LAGE3 RPL32 OR6D1P MTRNR2L6 BSCL2 ALDOA IDS HNRNPA1P40 RPS26 RPL21 DNAJC21 CFH\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "oligodendrocyte precursor cell" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: PTPRZ1 MT-ND4 MT-CO3 MT-CO1 MTRNR2L1 MT-ATP6 SCD5 MT-CO2 VCAN MT-ND3 VEGFA SLC6A1 PCDHGA5 MT-ND1 MT-ND2 MT-CYB WIPF1 SLC22A17 CHST9 SULF2 RAB3IP PDGFRA TBC1D15 MTRNR2L6 MTATP6P1 ATP2B4 HTRA1 SHC4 HSP90AA1 RPL35 CLTC BCAS1 MT1M DOCK10 COL9A1 C1QL1 TPT1 COL6A1 ARL6IP1 GPNMB MT3 MTRNR2L12 CPE PIK3R1 GDA PPP2R2C HSPE1 PLCB1 CADM2 ERBB3 CTNND2 SEZ6L NDUFV1 TMEM200C SPARC UBA1 IPCEF1 PCSK5 TLE4 SPTBN1 GPM6A TUBB4B VSTM2A FGF12 ZBTB20 TMSB4X RPL13 LAMA4 ASAP1 SLC9A6 OLIG1 RPL21 PRNP NTN4 PTGDS DDR2 RP11-632C17__A.1 NXPH1 PRKAR1A ATP2A2 DNER GPR56 HIGD1A CLEC14A ITM2C SNAP25 CLSTN1 CHGB TMA7 RPL37A ATP1A1 TMSB10 RPS2 AP3S1 POLR2K DPP6 CFL2 NOTCH1 ATP6V1E1 BEX4 PTN ZFAND5 COL11A1 TOX2 UBB ATP6AP2 ACSS1 CERS6 PJA2 ETV5 ZNF385D RAB3B SYTL2 RPL41 BSCL2 RPS26 RPL7 RPL36A\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "oligodendrocyte precursor cell" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: VCAN PTPRZ1 RAB3IP DISC1 SNAP25 TBC1D15 PLCD1 CADM3 NEGR1 C1QBP MT-CO3 PDGFRA CBX6 SOX6 ATP13A4 WIPF1 TLR4 ZNF365 CALM1 BGN NFIA MARCKSL1 WBP11 RAB1A PLD5 SULF2 KLHL5 SLC9A9 NTNG1 VDAC1 KIF7 YWHAZ KCNK1 AXL PLEKHH2 RTN3 FAM96B PRKAR1B MTMR9LP RPL35 PGAM1 REEP5 APLP2 POMP COA4 TMC2 NKIRAS1 GMFB MT-CO2 GPR37L1 SCD5 INSIG1 DNM3 PEBP1 MARCKS NTN4 PPAP2B ATP2B2 GPR56 MAP1LC3A TPT1 NKX2-2 KIFAP3 RNF11 ZCCHC17 PPP2CA TEFM HMP19 RPS5 MT-ND1 OLIG1 MAPRE3 PVRL1 HSP90AA1 SERPINE2 ZFP36L1 KCNAB3 ZFAND5 ZCCHC24 TTYH2 ARL2BP MT-ND3 RPS27A ATP6V0E2 PTPRS GPRC5B CALM2 PLCXD2 BCL11B STK39 TRIM37 RPL13 CLTC CLTA COL12A1 TMEM147 EXTL2 LAGE3 SPARC RAB3B ZNF385D ESCO2 SYTL2 ATP1A1 CYB5R3 PCDHGA6 PCDHGA10 PCDHGA5 DNAJC21\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "oligodendrocyte precursor cell" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: VEGFA SNAP25 FTH1 RAB3IP GAPDH PTPRZ1 RAB3B SYTL2 RPL38 RPS2 OLIG1 APOD MT-CO3 HMP19 CADM2 QKI ACTG1 PLOD2 FASN ANXA7 MT-CO1 ZFP36L2 CLTC SCD5 ETV5 ZBTB20 IGFBP2 RP13-492C18.2 GPR37L1 NKX2-2 ESYT1 NDUFB5 NTN4 ACLY ISCA1 WSB2 HTRA1 PLEKHH2 PKM NRCAM RPL41 RPS4X NOS1 GPX1 PFN2 FABP7 MT-ATP6 HES1 NEGR1 SMOC1 RAB31 METTL7A EDIL3 FLOT2 PGRMC1 BGN GHITM BNIP3 NACC2 PTCHD4 SCN1A SERPINE2 OCIAD1 ITM2C PCDH15 COL20A1 COX7B VSNL1 CYP26B1 SUMO2 GOLIM4 SCD VAMP2 MBP RPL13 GPM6A RNF11 LUZP2 SSPN IGSF21 RTN4 MTRNR2L12 RNF181 MT-ND3 COL9A2 RPL36A OLFM1 EIF4G2 SYT11 CLU DUSP4 SLC1A3 NDUFS5 MT-CYB TBC1D15 DNAJC21 RPL21\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "oligodendrocyte precursor cell" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: PTPRZ1 PDGFRA ZBTB20 MT-CO3 VEGFA CADM2 VCAN NFIA DGKG DISC1 SYTL2 RAB3B OLIG1 RPL13 MTRNR2L1 ATP1A2 SUB1 COL20A1 PIEZO1 QKI PCDH15 RPL31 OLIG2 NAPB ZFHX4 SCD5 CHCHD2 MT3 TXNIP CA10 SYT11 APOD MT-ND3 GPM6A APP FTL FRMD4B PLEKHH2 PTN RAB31 KCNAB1 PRUNE2 MT-CO1 H2AFZ GUCY1B3 C1QL2 CPE LAMA4 PTMA PCDHA4 PCDH17 CFH CST3 ATP2A2 ERBB3 RABAC1 SEMA5A SNAP25 TBCB CNTNAP5 SALL2 SOX6 FBXO2 MAP1B TSC22D1 DOCK10 THSD7A THY1 TCEB1 PCDHA10 PSAP HEPACAM PGK1 ELAVL2 ZCCHC24 BEX2 KIAA1755 PRKACB TCEAL5 TMEM130 MGST3 PPP1CB SOX4 INPP5F PRKAR1A TOX RPL15 LINC01296 TUBD1 USMG5 NDUFAF2 MPC2 COX6A1 HSP90AB1 ATP1B2 CHL1 BGN SLC24A3 KCNMB4 MT-CYB ZFP36L1 ARL6IP5 MT-ND5 CD63 KCNK1 SPTBN1 ARF5 CMTM5 MZT2B COL9A3 DPYSL2 DPF3 COL4A3 EDNRB PMP2 HMP19 PRTG UHMK1 FAM19A1 ELAVL4 FKBP4 DNER GABARAPL2 DUSP6 SELM SPARCL1 KRAS MFN2 ACSS1 RTN4 DAB2 PRNP FABP7 KLHL13 RPS27A ATP13A4 NGRN MTRNR2L6 MIF RPL3 CYB5R3 RPL13A PCDHGA10 PCDHGA6 PCDHGA5\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "oligodendrocyte precursor cell" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: PTPRZ1 OLIG1 RAB3B MT-CO3 PCDHGA5 CHL1 SMOC1 ATP1B2 SOX21 MYO10 AES MT-CO2 MT-ND2 GAPDH COL9A1 PI4KA PDGFRA SNAP91 ETFB PEPD ARFGAP2 ZBTB20 ANKRD18A GPNMB DGKG CDK5R1 KCNA2 OLFM1 APOD ASIC4 SOX2 PPFIBP2 ACTG1 HEPACAM FGFR3 VIPR2 KLHL12 RHOA DOCK10 CLGN PREX2 QKI MBP SEPP1 SNAP25 IDI1 PHPT1 MTUS1 ATP1A2 SPOCK1 VAMP2 MARCKS MLLT11 TRHDE CSDE1 CNTN1 SLC22A17 GPR37L1 IGSF21 ATP6AP2 GPRC5B UBE2D2 SALL1 RRM2B GPM6A NOTCH1 TMX4 C1QL1 METTL7A HIST1H2AC DNER CAMKK2 C1QL2 MT3 RPS6 ABHD14A TLR4 ATP2B2 RARRES3 CLIP3 RP11-111M22.2 POLR3H GPR56 RAD23B NRCAM LHFPL3 SOX10 SLC1A3 TLN2 ARPP19 ERBB4 BIRC5 MT-ND4 NFIA PON2 ATP5A1 ALDH1A3 DYNLL1 CDH13 ARL6IP1 PID1 EDIL3 GNAQ PCDH17 RPL6 SERF2 TUBB DNAJC21 TBC1D15 TF\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "oligodendrocyte precursor cell" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: PTPRZ1 MT-CO1 PLEKHH2 SCD5 NFIA SNAP25 MT-CO3 NXPH1 SNX22 ZBTB20 SLC1A2 ACTG1 LRP1B MARCKS SLC1A3 VCAN PCDHA9 MT-ND2 RAMP1 ZFP36L1 EBF4 RP11-111M22.2 NDUFA1 ERBB3 CPE NDUFB7 ASAP1 GFRA1 MAP4 UBC LYPD1 PCDH17 PSMC1 MT-ND4 ITPR2 NPTXR FJX1 STXBP1 TCEAL2 NRCAM STUB1 CNTN1 LAMTOR5 ATP6AP2 FASN PPAPDC1A ANKRD18A CBX6 TOMM20 ATP2A2 REPS2 MT-ND1 LPPR4 APLP2 TUBA1A GPR56 NKAIN4 NUP37 CRISPLD2 ATP5I BEND4 NR1I3 GABARAPL2 EIF1AX TSPYL1 FBLN2 MT-ND3 PMP2 SH3BGRL3 YWHAB FIBIN CREB5 CKB MAP1LC3B CENPVP3 OAT MTRNR2L1 MTATP6P1 SELT ENOPH1 ARL6IP1 PID1 ETV5 PPIA PGM2L1 OLIG2 OR6D1P PDGFRA PROX1 FAM69C GPR37L1 GPM6A PPAP2B LAMA4 BEX4 ATP1B1 PSMD12 PDLIM5 MTRNR2L12 GPRC5B DNER NCALD MAP7D1 GRIK1 FAM131B GPR98 ATP2C2 EIF4A2 NDRG2 CYP2R1 PCDH15 SOX6 TMSB10 MT-CYB NRGN PSAP COL20A1 BCAS1 SPARC NDFIP1 RAB3IP LMO3 SLC6A1 SKP1 AKAP12 MT-CO2 OLIG1 MT-ATP6 BAALC ATP5G2 TBC1D15 DNAJC21 HBA2 HBA1 IDS MTRNR2L6 SYTL2 ARFGAP2 RAB3B RPL21 PCDHGA10 PCDHGA5 PCDHGA6\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "oligodendrocyte precursor cell" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: TBC1D15 ACTG1 EID1 CLSTN2 RAB3B SYTL2 FERMT1 CISD1 ZCCHC24 MTRNR2L1 RELN NR1I3 BIRC5 EHD3 PSAP SERPINE2 RP11-111M22.2 OPALIN TRIM47 ARL6IP1 SNAP91 TBR1 TMSB10 SNX22 RPLP0P2 ATP5F1 PFDN1 COL5A3 PRNP TMOD2 GPCPD1 VEGFA PRKAR1A NOTCH1 ARL2BP EIF4G2 MYL6B GPNMB PDGFRA WFS1 TRPC3 UQCR10 PKM CFL1 TMSB4X SCD5 BTBD10 ID2 OR6D1P KIT GLIS3 SYT1 ENO2 MAP1A RPS10 DKK3 MORN2 ITFG1 SOX4 NDRG4 FARSA CLU SKP1 MAST3 OCIAD1 MT-CO3 COL20A1 SULF2 RPL38 ATP6V0E2 RPL31 RPS15 KIF21A SCN1A PCDH15 IFITM3 ATP2A2 UROS ACTB RP11-20I23.1 PFN2 SLITRK1 RGS12 FTL NRCAM ATP6V0C TCEAL2 CFH RPL13 NGRN MTRNR2L6 DNAJC21 ZNF385D\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "oligodendrocyte precursor cell" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: RAB3B VCAN OLIG1 MT-ATP6 PTPRZ1 SNAP25 ACTG1 MT-CYB SERPINE2 PDGFRA GORASP2 MT-CO3 ATP1A2 NFIA GPNMB SMOC1 ACTB MT-ND1 TSC22D4 SARAF ADARB2 PJA2 YWHAZ ARFGAP2 TUBA1B NCAM2 TPT1 SCN1A GPRC5B BEX5 PCDHGA10 SLC1A2 MT-ND5 NDUFB8 BSCL2 PHYHIPL MT-ND2 GRIK3 HTRA1 TSPAN7 PDLIM5 PPP3CA ETV5 WSCD1 MDH1 RAB31 MBP ZFHX4 B3GNT1 OR6D1P MT-CO2 MT-ND3 ZNF365 HSPB1 MEGF11 SULF2 SCOC KIF1A NR1I3 TMEM130 PCDH15 MT-ND4 ARF1 MTRNR2L12 FIBIN ASCL1 MT1X SPTBN1 SUMO3 VAMP2 ETV1 APOD PLEKHF1 NAT8L FIGN ZBTB20 ARL8A RAMP1 CD59 ATP6V1A ATP1A3 GPR56 CADM2 ELAVL4 OCIAD1 DPYSL2 ABCA8 ATP6V0E2 CNTNAP5 SPARCL1 COL11A1 HNRNPH2 GAPDH FKBP4 SCD5 PEA15 GFRA1 PSAP KLF3P1 RNA5-8SP6 BCL6 SEZ6L2 ATP5I ENO2 BEX4 THOC7 CHL1 DNER MARCKS MT-CO1 RP11-111M22.2 BIRC5 CFH RPL21 CAPZA2 MIR6723 RPL12 AC244489.1 HNRNPA1P40 SYTL2 PLEKHD1\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "oligodendrocyte precursor cell" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: SYTL2 RTN1 MT-CO3 MT-ND1 MORF4L1 PTPRZ1 TSPYL1 SARAF PPP3CA HOMER1 RTN4 MAST3 RAB6B ATP6V1B2 UCHL1 WASF1 PKM ATP2B2 GAPDH KIF21A TBCA AK5 RPL41 CLU STXBP1 CALM1 PRKCE CADM3 RTN3 MT-ND4 RNF11 HINT1 SYT1 CAP2 ATP6V0B MT3 TBC1D15 DPYSL2 PFN2 ARF3 COX7C HSP90AB1 FBXL16 NDFIP2 SYT11 PJA2 TIMP1 SLIT1 STX1A TUBA1B HTRA1 PSMC3 AEBP1 MT-ND2 LINGO1 PREPL CDK5R1 CALM3 ATP2A2 CARTPT RPL37A GPR56 WASL TXN KCNF1 ACTB IDS RPL11 STX1B NRCAM FTL FGF2 ALDH1L1 GNG3 MBOAT7 TOLLIP ARL4D ITM2C RPS28 BNIP3 THBS2 RPS12 PTK2B STMN2 MTRNR2L1 STK39 MSMO1 NGFRAP1 LMO4 DDN NAT8L CLSTN1 NDUFA4 YIPF3 TOMM20 MYL6B OCIAD1 UBE2D2 PPP3CB MTRNR2L12 SLC25A4 ATP1B1 RAB31 HDDC2 HNRNPH2 APLP1 CABP1 FAM134A ATP6V0E2 MAP2K1 MT2A HMGCS1 ATP2B4 RPS2 PEA15 MRPS7 GABRA1 HK1 KCNIP1 KIF3C ATP5I RSL24D1 SYNGR3 SOX6 REEP2 B3GNT7 IPCEF1 MT-ND3 TP53I11 GABARAPL1 NFIA AP2M1 PSMD2 CADM2 ATP13A4 CLTC MTRNR2L8 ANXA6 CST3 GRINA TMSB4X SOD1 TCEA2 ENC1 PTMA CCK THY1 NDRG4 PPP2R2B UQCRB LMO3 RGS4 GPX4 PPP2CA YWHAB SERPINE2 ADSS COL11A1 CCDC115 ASAP1 NTNG1 VPS35 VEGFA CRIM1 MTCH1 MAP1B OXR1 HEPACAM CAPNS1 TMEM70 PLOD2 FA2H PRNP CLIP3 HSP90AA1 RPL21 DYNLT3 SUMO1 NDFIP1 MZT2B ERBB3 SELT ZNF365 VSNL1 WSB2 ATP9A TSPAN7 SYN2 LRRIQ1 ATP5G1 RP11-20I23.1 ATP6V0C PPAP2B NSF ATP6V1G2 ARFGAP2 TUBB PCDHA9 PCDHAC1 PCDHA10 PCDHA4 RAB3B DNAJC21\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "oligodendrocyte precursor cell" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MT2A UBB STMN1 TUBA1B SERF2 TCEAL3 ACTB PSMA7 YWHAZ APLP2 H2AFZ JUNB SLC1A2 CENPU RPL13A ASPM RPL23A C4ORF3 PMP2 QKI SNAP25 ZBTB20 VAT1L PLCB1 BANF1 GDI1 TMSB4X ALCAM FAM131B CHCHD2 PVRL1 CDCA7L DNER TCEAL2 LRP1B RGS4 APP SLC1A3 RPS15 NRCAM PPP2CB SYT1 NME1 RPL7 CHL1 SLC12A5 TMA7 PTP4A1P2 PTPRZ1 CCL27 SSPN WBP2 RPL11 TLR4 TSPYL1 ZFHX4 CST3 MT3 KIF3C COL11A1 TMEM123 PROM1 GAPDH MRPS21 KIFAP3 FTH1 UQCRH PAQR8 FIS1 DYNLRB1 IGFBP5 CTBP1 RPL26 MARCKS PPP5D1 SARAF GLUL COX6A1 TPI1 CD9 PFN1 RPL7P38 KLC1 CAPZB TMSB10 RPL12 DYNLL2 CRISPLD2 NGFRAP1 TUBA1A GRIK1 INPP5F TOMM7 LHFPL3 LSM4 BCAT1 FOS EDF1 SLC22A17 PIEZO1 SOX6 RANBP1 ARL2BP SLC25A5 HMP19 ARPP19 CNTNAP5 FBLN1 ATP6AP1 MORN2 ARL6IP5 RP11-632C17__A.1 POLR2K RPS3A SLC25A48 FIGN PSAP NFIA SOX11 OCIAD1 VAMP2 NRIP3 ASAP1 CA11 ARFGAP2 NUDT4 MT-CO3 RNASEK-C17ORF49 RAB3B SYTL2 ZNF385D TUBB RPL17P50 RPL17-C18ORF32 RPL17\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "oligodendrocyte precursor cell" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MT-CO1 MT-CO3 MTRNR2L1 MT-ND4 MT-ATP6 MT-ND3 APLP2 MT-CO2 SLC1A2 VCAN PTPRZ1 MT-CYB ZCCHC24 RP11-111M22.2 CRISPLD2 SPARCL1 SCN1A LUZP2 SMOC1 NFIA RAB3B ZNF385D ATP13A4 RPL13 STMN2 LAMA4 PLEKHH2 RAB2A ATP2B4 DNM3 KCNJ10 GPM6A TSPAN7 MT-ND2 ASAP1 RAB5C TPD52 ERBB3 MARCKS PHF11 FAIM2 PLD3 ITM2C LRP1B ASB13 RTN1 GPRC5B ZBTB20 CERS6 SNRPN HTRA1 NDUFS5 SCD5 PSD3 DCC BAI2 SKP1 COL9A1 HSP90AA1 RPL38 GPNMB BCAS1 KIF19 ERBB4 CNTNAP3 SARAF PRDM16 SLC6A1 NDUFB2 APOD NAT8L LRP4 MT-ND4L ALDOC OLIG2 NACC2 NDRG2 GPR17 PDGFRA COL20A1 OCIAD1 SNAP25 NDUFA1 MTRNR2L12 ACTB ADORA1 RTN3 SNX22 MT-ND5 DLC1 JUND ZFAND5 SOX2 CREB5 ITFG1 CSDE1 TMEM35 GHITM ZFP36L1 GPR98 MYO16 RPL35 PDK4 THBS2 HMP19 MTND6P4 TENM1 MT-ND1 GPR56 VWA1 ITPR2 MTRNR2L6 RP11-219A15.1 DNAJC21 TBC1D15 CFH\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "oligodendrocyte precursor cell" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: SNAP25 VCAN PTPRZ1 SCD5 SLC1A2 SYT11 APOD NR1I3 TBC1D15 SCN1A CHL1 MT-ND4L CKB SLC22A17 EDIL3 RHOB NTN4 GPR56 AZGP1 BCAS1 COL11A1 MT-CO3 NFIA MT-ND4 ACTB QKI MARCKS COL20A1 VIPR2 SQLE PDGFRA VAMP2 SNRPN C9ORF16 TIMP3 TMEM200C SARAF C6ORF118 EPS8 SMAP2 SOX10 CD63 ITM2C PPIA GYG1 ARL6IP1 HS6ST3 MT1X MBP SNX3 VWA1 ADAMTS9 ATP6V0E2 RPS28 HEY1 HTRA1 ATP5O PPP1CB CYP27A1 MT-ND1 PHYHIPL TSPYL1 PON2 SPCS2 NIPA1 VSTM2A NOP10 EIF4A2 NDUFA8 GPRC5B TCEB1 C1QL2 DPP6 RELL2 GLUL DGKG EFEMP1 RGCC SKP1 ATP2B4 C14ORF2 PSD3 GABARAPL2 SOX6 AES CALCRL TOMM7 CAMK4 PIK3R1 MT3 MT-ND3 CAPZB RAB31 BMP2 MARCKSL1 SLC19A3 BIRC5 PMP2 NDUFC1 NRCAM CADM2 ATP1B2 CRYAB C10ORF54 ARHGAP42 RPL3 EIF4G2 CDH8 TEFM ATP13A4 MT2A TMEM132C SLC1A3 MAPK1 COX6A1 FTL ERBB3 SEPW1 GPNMB FMO5 S100B MT-CO2 DNER TXNIP RPL6 CALM2 DUSP6 NDRG2 RPL35 HIF3A MAP1A BCL6 RPL31 SEMA5A FGF2 SLC6A1 C16ORF13 SERINC1 COTL1 TENM1 PPP2R4 COX5A SERPINE2 NPAS3 RAMP1 KLHL5 CSPG4 SOX2 NR4A2 COX14 COL9A1 ZNF385D SYTL2 RAB3B GPR98 RPL23A GTF2H2C_2 RPL13A HNRNPA1P40 PLEKHD1 PCDHA9 PCDHA4 PCDHA10 PCDHAC1 PCDHGA10 PCDHGA5 PCDHGA6\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "oligodendrocyte precursor cell" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: RAB3IP JUN PTPRZ1 RPL31 PSD3 PMP2 VEGFA SYTL2 ZNF385D COX7B ENO1 COX7C PDGFRA ZFP36L2 VCAN DPYSL2 RPL12 ATP5I NKAIN4 RPL13 BCAT1 SLC1A2 SCD5 GADD45B MT2A ENO2 RPL23A SNAPC5 BCKDK UQCR10 ESCO2 TBC1D15 LDHB PEBP1 TIMP1 CEND1 FTL MT-ND2 MRPL55 VSNL1 OAZ1 SPARC FTH1 LUZP2 SUB1 CCK CHL1 ZBTB20 PRDX5 RPS27A S100B FOS GRINA EZH2 SLC1A3 ARF3 YJEFN3 B3GNT7 MRPL51 USMG5 PLEKHH2 SLC25A5 MYO10 SLC24A2 MAPK8IP2 SLC22A4 GPR37L1 ALG3 CD63 TMA7 MT-CO2 NDUFAB1 ACTG1 TRAPPC1 TRIB2 SERF2 GABARAPL1 YWHAG TENM1 LPPR4 DDAH1 LMO2 SOX6 ACTR1A OLFM1 RHBDD2 LRP1B RPS2 COMTD1 HMGCR YWHAB RAN NCAM2 KIF3C TCEB1 STMN4 COL9A1 DYNLT3 THOC7 DSTN MAL2 NDUFB10 ARL6IP1 ASCL1 POLR2I GPR56 RCAN2 PEA15 PLSCR1 ENPP2 MRPS21 NFIA TSPYL1 HINT1 RPL32 UBC CCDC85B SMS CST3 RP11-632C17__A.1 RBMX2P3 TANC1 BSN OXCT1 GALNT14 TPT1 OCIAD1 COX6C RTN3 NEUROD2 RPL3 NUAK1 RPS28 PPAP2B RPL35 SDCBP SCAND1 PTMA FGF2 CFL1 BLVRB ATP5G1 GAD1 RSL24D1 PPP2CA COX7A2 MARCKSL1 PSAP SSTR2 RPL41 GPCPD1 ATP1A3 RANBP1 GNG3 ELMO1 MBP SNCB TRMT112 RPL8 THBS4 MT1M CYFIP2 HDLBP ZNF208 CALM2 NDRG2 HRK RPS26 APOL6 APLP1 NRCAM S100A16 CCND1 APOLD1 ARF5 TUBB3 NUDT21 IDS PCDHGA5 PCDHGA6 PCDHGA10 DNAJC21\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "oligodendrocyte precursor cell" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: VCAN PTPRZ1 SPARCL1 GPM6A SOX6 PSAP CNTN1 MT-ATP6 PGRMC1 SCD5 MT-CO1 GPNMB MAGEH1 MT-CO2 SLC22A17 TBC1D15 AIF1L DNER SLC39A10 ID2 NTNG1 BAALC ENO1 TXNIP MTATP6P1 NEGR1 ACTB KIF21A GRIK1 MTPN ASAP1 MAPKAPK2 B3GNT1 UBE2QL1 APOD COL9A1 GYG1 SYT11 SPCS2 RTN1 PRRX1 THSD7A HS6ST3 CHL1 NR1I3 ENSA TSPAN7 PRKACB ZCCHC24 NFIA RPS4X ETV5 THY1 NCAM2 SLC1A2 SARAF WWTR1 COL20A1 GHITM NDRG2 ZFP36L1 NELL1 HIF3A KCNA5 SKP1 SMIM13 NDFIP1 SCOC ALDOC HMP19 RNF11 HTRA1 RAB3IP RPL13A PMP2 HSP90AA1 CCDC25 OAZ1 CKB KLHL5 SCN1A RPL13 SLCO2A1 TF PGK1 OLIG2 COL11A1 THYN1 TMSB4X CNP SLIT1 QKI PRDX1 TENM1 PHYHIPL SERINC3 NRCAM ZFHX4 SLC17A8 SYTL2 BCAS1 LANCL1 EDIL3 PPIA RPL31 TUBA1A MT-ND1 ETV1 MT-ND3 DISC1 RP11-219A15.1 GTF2H2C_2 PCDHGA6 PCDHGA5 PCDHGA10\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "oligodendrocyte precursor cell" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: BCAS1 PLP1 RTN4 DYNLL1 RAB3B MBP SYTL2 COL9A1 OLIG1 MAPK1 PTGDS SOX10 TMCC3 MT-CYB PMP2 ZBTB20 MSMO1 PFN2 SMOC1 MT-CO2 GPR17 TBC1D15 TF AC011043.1 FRMD4B TUBB4A ATOX1 KIF21A MAP1B RPS12 ADAM33 NDUFB2 NCAM2 DPP6 PTPRZ1 SNX22 ALCAM BIRC5 TIMP2 RP11-111M22.2 NKX2-2 SLIT1 PCDH15 TMSB4X SLC7A2 QKI ERBB3 YWHAG APLP2 MYL6 SARAF SNRPN RPL15 FGF2 PODXL TEX2 CENPU EDIL3 SOX2 ARFGAP2 ARL2BP COX6C MTPN TUBA1A ITM2B SOX6 POLR2L MT-CO3 SYT11 TMSB10 SLC24A2 EIF4A2 DCC TPGS2 TMEM88B TOPORS-AS1 EBF4 SCD C1QL1 LHFPL3 THY1 DGUOK ST18 PPP2R2B FGF12 VEGFA CFH MIR6723 EEF1A2 NFIA MT-CO1 SSTR2 PCDHGA6 PCDHGA10 PCDHGA5\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "oligodendrocyte precursor cell" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: VCAN PTPRZ1 RAB3B PSAP CADM2 MT-CO3 CLSTN1 GPM6A PDGFRA SNAP25 SKP1 ATP1A1 MT-CO2 TCEB2 ALCAM SLC25A4 SLC9A9 MEGF11 HTRA1 QKI ALDOC EDIL3 SLC1A3 SCD5 RAB6A PCDHGA5 KLHL5 SLC6A1 MT-ND2 MT-ATP6 OLIG2 ZBTB20 MARCKS ZNF385D TBC1D15 APOD PEX5L EPHB1 UBE2V2 ATP6V0B NPPB BEX4 BAALC APOL6 METTL7A NFIA BASP1 B3GNT7 PHYHIPL SLC1A2 SUCLA2 VDAC2 GNB1 TRIM47 CDC37 S100A16 KIF21A PPIA RGCC ANGPTL2 RELL1 NAPA ARPC4 HSP90AA1 VAMP2 LRP1B EHD3 NAP1L5 AURKAIP1 NKAIN4 VPS35 INHBA PTMA MAGED2 ATP6V1C1 ARF3 TMEM132C HIF3A SMOC1 PCDH15 NRCAM KCNA2 KLC1 BRINP3 KCNA1 PRKAR1A FIGN DPYSL2 NDRG2 EIF4A2 VDAC3 RAP2A SOX6 ATP1B2 NDUFB10 PRKACB ID2 THY1 CSPG4 THSD7A STMN3 RNF11 ATP2A2 PPAPDC1A ERBB3 PCDH17 HEPN1 BCAS1 CTDSP1 PALD1 B2M NCKAP5 SPARCL1 PAQR9 UBB GPR56 CPE CMAHP TRIM60P17 MT1E TCEB1 ITPR2 FABP5 IGSF21 RAB31 INHBB PRDX3 COL20A1 TMEM35 PRTG MRPS21 ATP6V0E2 BCKDHB CMTM5 MT-ND5 MTMR9LP PIP5K1B MTRNR2L12 FAM69C CNTN1 PCDHA4 GOT2 PGRMC1 DISC1 RPL37A ENOPH1 TMTC4 ITFG1 TCEAL7 VEGFA RTN3 ARF1 CREB5 RP11-111M22.2 ZCCHC24 YAF2 DYNLL1 TMEM258 GLUL LHFPL3 FAIM2 ELAVL4 SLC24A2 PLEKHD1 APOLD1 RPL13 RP11-219A15.1 RPL18A GTF2H2C_2\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "oligodendrocyte precursor cell" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: TBC1D15 NFIA VEGFA ZBTB20 B3GNT7 PTPRZ1 WLS OLIG1 SEPP1 CA10 SCD5 ASAP1 FERMT1 WSB2 CTSD ZCCHC24 SNAP25 HNRNPA1P40 EPS8 THY1 HMP19 MT3 ACTB RPL3 MEGF11 TXNIP FKBP8 CHL1 CABP1 ACTG1 ITM2C PLD5 SYT11 PCSK1 DYNLL2 PLEKHH2 DNER HIST1H2AC PGRMC1 SNX10 PROM1 SLC7A5 MT-CO2 CHADL ADAMTS17 SKP1 RANBP1 EIF4A2 ENSA RPL41 BAALC FAIM2 MTG1 SOX6 KLHL5 BNIP3 SHISA8 PCDH17 VCAN NDUFA8 SLC25A6 PMP2 HEG1 STMN4 SRP14 DUSP6 RAB6A C1QL1 SPOCK1 MT-CYB OLIG2 RTN1 ADD2 APOL6 HMGCR ATP5B EDIL3 UHMK1 HSP90AA1 MYOM1 NOTCH1 SPP1 GSG1L ATP6V0E2 SUB1 GAD1 SEPW1 PCBP1 PCDHGA10 NDRG2 PLOD2 SSBP3 MT-CO3 SLC9A9 TOMM34 RAB31 FGFR3 CREB5 COL4A3 MT-ND4 PSAP RPL39 ERBB3 CFH NSF ZNF385D SYTL2 RAB3B TUBD1\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "oligodendrocyte precursor cell" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: VCAN QKI MARCKS VEGFA PTPRZ1 SLC1A2 PDGFRA OLIG1 DLL3 HTRA1 DUSP6 MTRNR2L12 MT-CO3 PCDH17 SRP14 RPL35 CST3 APOD GFAP THY1 INHBA RAB3B SYTL2 KIAA1024 CDK5R1 FAM84A DNAH11 SYN1 NRCAM TCN2 CLSTN1 NFIA ZCCHC24 GALK1 MT3 EHD3 SHC4 SCAMP5 GPR17 RHOA PHYHIPL MSMO1 FERMT1 DDAH1 PCDH15 SLC40A1 OLFM1 CFL1 HSP90AA1 SOX10 ACTG1 TMEM130 MPI RAB3IP MORF4L2 MT-ND2 CHL1 SLC24A2 PGM2L1 ALCAM CNTNAP5 LMBRD2 MT-CO1 ENO1 DGKG CD9 ITGB4 DNM3 LINGO1 SLC22A17 RPL12 TMEM179B C18ORF21 PPIA RHOB FGF12 CTU2 BCL6 CADM2 TRIM37 SMOC1 RPL8 BEX5 SNX3 RPL13A RPL41 ATP5I EID1 PRNP PCDH19 C1QL1 GFRA1 MORF4L1 ATP6AP2 DPP6 SPOCK1 GABARAPL1 SELT AP2M1 SEPP1 APBB1 TOMM7 ASIC4 ITM2B COX6A1 PCDHGA6 ATP2B4 STMN1 PRRX1 MYRF SPARCL1 ALDOC HIF3A PGRMC1 RAB9A TCEAL7 PMP2 WFS1 SNAP25 ANXA6 MBP TBC1D15 GAPDH YIPF1 NPTX2 RAMP1 DNAJC6 RPL15 MT-ATP6 ZBTB20 MTRNR2L8 DLC1 GPR98 SERF2 B2M OR6D1P\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "oligodendrocyte precursor cell" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: SLC1A3 SLC1A2 SPARCL1 CFH PTPRZ1 NFIA MTRNR2L1 MTRNR2L12 ITPR2 MT3 ID4 MT-CO1 APOE SYT17 CKB ALCAM ZNF385D RAB3B SYTL2 SNAP25 CPE PSMC3 PLEKHH2 FAM84A MAGED1 ARL1 GNB1 VEGFA PRNP RPL8 SLC35B1 HIF3A ZBTB20 CLIP3 SDC2 RAB13 VAPB METTL7A NPAS3 GHITM KCNA2 GPM6A RP11-111M22.2 SOX2 BCL6 PAPLN CSDE1 ZNF423 ATP1A2 INHBB NDRG2 RORB PLP1 SCD5 SLC9A6 PHYHIP COL9A2 SERPINI1 GUK1 GAPDH HMGCR LUZP2 OPCML SUB1 TUBB2B CEND1 GPR132 SDC4 MT-ND4L MT1E SLC22A17 DGKG STOX1 APOD ACTG1 CST3 ZFHX4 PCDH15 CLU FAM198B CAPZB RLIM TSC22D4 ATPAF1 GLUL FAM163B PSMB7 RAB3IP RP11-139K1.2 ZCCHC24 MTRNR2L6 ANGPTL4 ATP2B4 RPS28 TUBA1B TCEA2 FAM111A MRVI1 ACACB PDGFRB MT-ATP6 TSPYL1 QKI SCN1A SPTBN1 MT1X ZFAND5 SKP1 NR1I3 PPIA RPL21\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "oligodendrocyte precursor cell" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MT-ND4 MT-ND3 MT-CO2 MBP PCDHGA5 TXNIP PTPRZ1 MT-CO1 VCAN EVI2A NDUFA12 SPP1 ST18 MT-ND2 MT-ATP6 LRP2 ZBTB20 EDIL3 KCNJ10 SMOC1 APOLD1 PDE1C RPL35 PLP1 PSAP HEY1 SERPINE2 ATP1A2 AP3S1 HHIP ITM2B GPR37 MT3 TMEM100 MGST3 SOX6 SLC9A9 PCDH19 INPP5F TLE4 MFSD6 ATP1A1 TMSB4X CSPG4 OLA1 COX4I1 CADM3 LANCL1 UBA52 CPE TSC22D4 HSPA2 CACNB1 SCN1A SPOCK2 ATP5G2 GSTP1 KIF19 FGF12 MFN2 CNIH3 CLTC REPS2 B3GALT2 CAPZB SNX22 STMN1 SEZ6L2 RP11-219A15.1 SRP14 PTGDS MT1X CHST8 PGM2L1 TUBA1A DGKG SNCA SLC22A17 MT-CYB NDRG2 NKX2-2 SERP2 FAIM2 C18ORF32 SH3BGRL3 HPRT1 MTCH1 ARL8A PPP1CB CLMN PKM ZFP36L1 AP1S2 TIMP3 OPA1 ANLN TMEM151A DISC1 BEX5 MARCKS GRAMD3 DUSP6 ERMN CTNNA3 RAPGEF5 SCD5 PTMA PDP1 RPL37A CLDND1 ANXA4 ZCCHC24 GMFB PLD5 HEPACAM HIST1H2AC GRIK1 GPRC5B HTRA1 RASGRF1 EIF4G2 CXXC4 MAST3 CYC1 ATP5E MT-CO3 MAL OLIG2 CLTA SCD MYL6 CX3CL1 HOMER1 NDUFAB1 PEX5L RPL41 SPOCK3 ACTB TTYH2 TOMM20 MAP1B TKT PIP4K2A MT-ND4L PID1 MARCKSL1 HHATL CREB5 QKI CNTN1 LGALS1 CALM1 DNAJC6 PGK1 CLSTN1 UBB SEPP1 PPP1R14A ZMAT2 FTL TSPYL5 RTN3 PCDHB4 ATP1B1 APLP2 FAM127A COL20A1 SEMA5A AES RPS3A ASPA GAPDH RSL24D1 SULF2 SLC1A2 COX6B1 ARL8B PLEKHD1 RPL13A GHITM RPL17 RPL17-C18ORF32\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "oligodendrocyte precursor cell" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: RAB3IP PTPRZ1 FTH1 GAPDH PSAP CADM2 NGFRAP1 VEGFA ZBTB20 SERPINE2 ACTB TCEAL2 MARCKSL1 RANBP3L ENO1 CREB5 TUBB ATP1A3 RPL13 CST3 APP MT1X MTRNR2L12 ITM2C VCAN ARL6IP5 MT2A CLU SCD5 DNAJC21 NR1I3 VAMP2 AZIN1 ATP6V0B CADM3 SCN1A RPS6 ELAVL2 OR6D1P MRPL55 RASGRF1 ALDOC COX7A1 SHISA6 LUZP2 ATP5J2 SERP2 TIMP3 MT-ND4 RTN3 NPAS3 VDAC3 EIF1 MT-ND4L PTMA RP11-632C17__A.1 PREX2 RPL35 FBLN2 CHST11 MT-ND2 AIMP2 ATP5G3 STMN1 TSPYL4 RPS4X GAD1 PIN1 SEZ6L PTN LINC00116 TMEM255A TMEM158 UQCR10 TCEB2 KLC2 STXBP1 VWA1 ETV1 RAN TMEM200C NDUFA11 SYTL2 GRIN2A BEX5 CCDC85B DIRAS2 PCDH17 COX8A PCDH15 DUSP1 MT3 TMEM59L EDIL3 QKI SPATA13 HSPE1 LDHB MORF4L1 YAF2 SSPN ASIC4 BCL6 LMO2 GPM6A SRP9 GDI1 AP1S1 CKB FABP5 DNM3 CLSTN2 SPARC ID2 MTCH1 MEGF11 RTN4 KLC1 HOMER3 ANAPC11 ALDH1A3 NPTXR ADM APOD INPP5F DCC RPS28 BHLHE40 SMOC1 SOX6 PPIA CALM3 ADAMTS9 MT-CO2 CLDND1 HOMER1 PLOD2 AP2M1 ATP5A1 MT-CO1 CSPG4 BCAP31 RPL38 HTRA1 ZCCHC24 OLFM2 DGUOK MT-CO3 NFIA ATP5G2 SSTR2 ATP6V0E2 SYT4 SCOC CPE GALK1 MTRNR2L8 RP11-20I23.1 RNASEK-C17ORF49 ATP6V0C COX6A1 RPL13A MIF TBC1D15\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "oligodendrocyte precursor cell" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: PTPRZ1 CFH TCEB2 SLC1A3 CCDC168 RPL21 BGN MT-CO3 MT-CO1 ATXN10 MT-ND3 SNAP25 FERMT1 RPS6 STXBP1 ADTRP EDNRB ECM1 CNTN1 CCDC158 RPS3A DNER TENM1 CHL1 TSPAN7 MYOM1 C19ORF10 CHRNA2 PREX2 VCAN BCL6 NDUFS5 FKBP8 CACNA2D2 HN1 ARPP19 NDUFB2 COQ10B SLC6A1 MRPS21 PRDM16 ZFP36L1 SOD1 CST3 NDUFB1 TPI1 UBC GPRC5B ETV5 TXNDC17 COL9A1 BCAS2 TLE4 NFIA KIT MT2A ARF5 SEZ6L SPOCK1 APOD SEMA5A COL11A1 HMGB1P8 MT-ND1 PIK3R1 PGRMC1 CPE QKI AES VDAC3 ACSS1 HTRA1 MT-ATP6 B3GALT2 UQCRC2 PLEKHD1 BCAS1 NCAM2 MT-CO2 TSC22D1 PRKCE NRCAM HNRNPH2 CLIP3 CD9 OR6D1P GTF2H2C_2 RAB3B SYTL2 ZNF385D RPL7 PCDHGA6 PCDHGA10 PCDHGA5\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "oligodendrocyte precursor cell" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: PTPRZ1 QKI TF RPL41 VCAN RTN1 SMOC1 ZBTB20 OLIG2 NR1I3 MT-ND4 SNAP25 COL4A3 RAB6A SCG2 RPL21 ITM2B TMSB4X C1QL1 ZFAND5 BNIP3 ARHGAP29 AIF1L JUN PREPL KLC1 SCN1A OLIG1 SCD5 ZNF536 ATP6V0B CRISPLD2 MARCKS PSAP ATP6AP1 ATP5B SLC6A1 OLFM2 ATP2B4 C7ORF50 ZFHX4 MAP1B FAM149B1 HTRA1 CAMK2N2 MT-CO1 JUND PTMA BASP1 TMA7 DGKG SLC1A2 RP11-111M22.2 NKAIN4 ATP5J SARAF GOLIM4 DNAJC5 LHFPL3 EIF4A2 MDH1 SFRP1 TMEM200C GNG12 ERBB3 FSTL5 EIF1AX CHADL MTCH1 GNB1 COL9A1 NFIA MTRNR2L12 FAM3C ACTB SSPN HSP90AB1 NTNG1 LRP4 UBE2V2 ATP5O RPS27A BEX1 MT-CO3 GPR56 SNX22 MEGF11 PTN SEZ6L GPRC5B ITGB5 OR6D1P GHITM IDS\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "oligodendrocyte precursor cell" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: TBC1D15 PTPRZ1 OLFM2 SNAP25 ATP6V0E2 NXPH1 FERMT1 MEGF11 ZBTB20 SLC22A17 NFIA ZNF365 SCAMP5 SCD5 CALM2 SCN1A NDFIP1 ERH ATP13A4 NAP1L3 TUBA1A SOX6 IGFBP5 RGS12 DDAH1 PKM DNAJA1 F3 PTN PCDHA4 MARCKS RP11-111M22.2 PPIH SLC24A2 TLE4 COL9A1 ITM2C OLA1 TMEM123 HOMER1 SLC7A1 PTGDS SEMA5A MYO10 TSPAN7 SLC1A3 SOX10 TPGS2 VCAN MT-ND4 WBP2 REEP5 RPS28 ANO3 MCMDC2 MT-ND4L CLSTN1 NDUFAF2 TRIL CIAPIN1 PFN2 CD63 RAB3IP PNMA2 ALCAM PSMC3 OLIG2 PHYHIPL SMAP2 ATP6AP2 CHST11 ACLY NR1I3 ZCCHC24 PVRL1 DGKG SELT METTL23 SELM SERF2 SLC40A1 QKI HSP90AA1 RTN1 TMOD2 LUZP2 CFH RPL21 SYTL2 RAB3B ZNF385D AC244489.1 PPIA PCDHGA6 PCDHGA5 PCDHGA10\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "oligodendrocyte precursor cell" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: VEGFA RAB3B MT-CO1 ZBTB20 MT-ND4 VCAN PTPRZ1 SNAP25 APOD HES1 PCDH15 DNAH11 ATP1A2 SPARCL1 MT-ND3 FARSA ATP1B2 TPPP GNG2 POLD1 C19ORF70 MT-CO3 OAT MEGF11 CTSD SLC1A3 CRTAC1 DOCK10 HTRA1 LINGO1 MT1E CHST9 UQCRB CAMK2D CAMK4 AP3S1 SEPP1 MBP SLC38A3 FAM19A2 SCD5 SHISA6 MT-ATP6 GPNMB TLE4 NDUFA13 SLC22A17 NNAT TUBB3 PCDH17 ATP2B4 PPAP2B PROM1 CPE RTN3 CDHR1 RPL23A GPR17 SLC25A22 DUSP1 UBE2L6 PTN COL20A1 CLSTN1 TMEM144 MTATP6P1 MRPL20 C19ORF53 HEPN1 RPL13 TMEM59L UBA52 MT2A ID2 SPOCK1 CALCRL NOTCH1 NFIA VAMP2 RAB3IP OR6D1P LUZP2 TRIB2 CLSTN2 OPCML PAM PGRMC1 TXNIP UBC EDF1 ATP5G3 NDUFA5 ADM RPL10A CSPG4 TUBA1A HSP90AA1 PVRL1 HSD17B14 MRAS EIF1B BAI2 MT-CO2 MT-CYB S100B MTRNR2L1 ENO2 PLEKHH2 PRKACB PHYHIPL RPL11 PLIN2 COL9A1 TSPAN7 CABP1 GDI1 RPS5 GSTT1 ETFB TBC1D15 DNAJC21 RPL41 C11ORF31 MTRNR2L6 NR1I3 CYB5R3\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "oligodendrocyte precursor cell" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: PTPRZ1 COL9A1 VCAN ZFP36L1 MT-CO2 MAP2K2 B2M ARFGAP2 MT-ND4 SHC4 RGS12 GPR56 MT-ND2 TXNIP ZBTB20 MT-ND1 CHST11 KCNJ10 ESCO2 OLIG2 LAMTOR2 ERH SOX10 LMO4 SCD SPI1 SEMA5A GPR37L1 PRKACB CEND1 MT-CO3 SRP14 PTMA CLU COL9A2 TMEM200C ASAP1 ARL2BP ALDH1L1 IDI1 PPAP2B OLFM2 SNAP25 BAALC MTRNR2L12 RPL15 MT-CYB HTRA1 VAMP2 CSRP1 TUBB4B DUSP1 SLC25A5 OPCML FIS1 NPTX2 MPC2 DNM3 GSTO1 LHFPL3 NAA38 COQ10B COL20A1 SELT GNG3 SOX6 GPX4 SCD5 RAB31 ATP6V0B CST3 ZCCHC24 PCDHB4 MT-CO1 POMP APOD ARPC5L ARF1 NFIA MTCH1 FIBIN FXYD6 LINC01296 EDIL3 DNER CNRIP1 CADM2 SPOCK1 CLIP3 VDAC3 MTRNR2L8 ERBB3 SEZ6L ZFHX4 BEX1 YWHAB C1ORF233 CLSTN1 PMP2 CMTM5 SPOCK2 PDGFRB CRIM1 S100B SULF2 SGCZ KIT TCEAL3 GSTP1 FIBP GDE1 RPS15 APBB1 PSAP TUBD1 CHST8 SPATA13 FIGN REEP2 RPS28 PPP2R4 RHEB RPS6 PLTP APP FBLN2 TANC1 PCDH15 GABARAP RELN BIRC5 SYTL2 ZNF385D RAB3B DNAJC21 TBC1D15 PCDHGA6 PCDHGA5 PCDHGA10\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "oligodendrocyte precursor cell" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: VEGFA CCK GPM6A RPL8 FOS TALDO1 CYFIP2 GPCPD1 RAB3IP RAB3B NFIA UBC ZCCHC24 CD99L2 ZFP36 PLOD2 NAPB APOL6 PNMAL2 MRAS ZFP36L1 CALM2 TRIB2 HIF3A PLCXD2 NCALD DEXI GHITM RPS4X CRIM1 ADM VCAN NDRG4 AP2M1 PTPRZ1 RAB6A CLU MT-ATP6 RPL10A TRIM47 PNMA2 AKAP12 MZT2B NRCAM SOX21 RPL13 SH3BGRL2 WIPF1 LRP1B MAPK1 GADD45B SLC1A2 CST3 SLC2A1 DPYSL2 ID2 POLR2J CDHR1 FREM2 ALDOC ATP6V0E2 MARCKS TENM1 COX6B1 NUDT21 CEND1 ATP5G3 RP11-111M22.2 EDIL3 PPDPF ZBTB18 UCHL1 MTRNR2L1 MT2A GPX4 STMN1 CREB5 DKK3 OAZ1 PTN BCHE FAM84A TANC1 BSG COL20A1 GRIK1 NEK7 NDUFB8 JUNB GRIN2A SERPINE2 NEGR1 RTN3 ARHGAP35 PINK1 ACOT7 MAPKAPK2 BHLHE40 CAMK2N2 MT-ND2 RPL21 MT1X CTC-575D19.1 RPL37A TKT ZMAT2 TMEM147 PNKD TMEM59L EPB41L3 ISG15 ATP6V1F TMEM132C TMSB10 SPARCL1 CLTC COPG1 CLSTN1 FAIM2 DYNLL1 APOD SEZ6L FAT3 SEC61G TPI1 C1QL1 HEPACAM MT-CYB OR6D1P SNCA TM2D3 B2M BSCL2 MTRNR2L6 MT-CO1 MIR6723 TBC1D15 AC244489.1 PCDHGA10 PCDHGA6 PCDHGA5\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "oligodendrocyte precursor cell" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: PLP1 APLP1 MT-CO2 NFIA PTGDS TMEM144 TF CLDND1 MBP MT-CO3 CLDN11 PLEKHD1 RP11-111M22.2 SEMA5A WSCD1 DPP6 CLU ATP5G2 SPOCK1 ACTG1 ABCA8 ANAPC11 ST18 MTRNR2L12 PEBP1 FAM107B ACTB PJA2 PSAP RTN4 NR1I3 ZBTB20 DNER SPP1 SLC24A2 RPL3 CD9 RPS6 ELMO1 VCAN VEGFA DPYSL2 ENPP2 TTYH2 HTRA1 QKI GPRC5B MGST3 HIF3A PLEKHH2 SMOC1 SYTL2 RAB3B MT-ND3 MRPL51 ZCCHC24 GGT5 PCDHB4 CRYAB TXNIP SQLE FGF12 TNFRSF11B PIK3R1 RPL26 ANKRD18A FTL TUBB4A FTH1 TMEM130 CPE CREB5 AZGP1 LUZP2 PPDPF TMEM63A PIEZO1 TMA7 SERINC3 SOX2 NKX2-2 GPX4 TUBA1B MT1X DNM3 RPL37A SLC6A1 PPP2R2B APOD REPS2 ERBB3 TMSB4X NOTCH1 CSPG4 RHOB JUND RPL38 NRCAM NKX6-2 NDFIP1 PPARGC1A PEX5L KIF21A SERINC1 BASP1 NARS CNP MRPL33 DHCR24 PRKACB MT-ND2 CRKL GAPDH MT-ND5 CLTC SEPP1 ATP6V0E2 RPL13 AZIN1 SKP1 GPR37 ATP5G3 NME1 IGSF21 CTBP1 SUSD4 RAMP1 HSP90AB1 RPL35 YWHAQ DYNLRB1 VWA1 YIPF3 ATP5E SOD1 ARHGDIA ZNF343 HS6ST3 STXBP6 PSMD12 SULF2 ATRN CLMN RPS10 PPIA PIEZO2 HEPACAM TERF2IP ARL2BP PAFAH1B2 GUK1 ENO1 MAPRE2 CXXC4 MTRNR2L8 SPARC PPP2CB MFN2 PCDHB10 NCKAP5 MEGF10 BRINP3 SCD5 C14ORF2 FA2H KLHL1 DUSP6 AGT GAD1 RPL23A WASL MYO10 RPL21 CDK17 TPT1 PIN1 EDIL3 ANLN MT-ND4 SSTR2 CTSD SGCD OR6D1P RPL17-C18ORF32 IDS C18ORF32 RNASEK-C17ORF49 GTF2H2C_2 DNAJC21 TBC1D15\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "oligodendrocyte precursor cell" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: OLIG1 ZBTB20 PTPRZ1 HIF3A TBC1D15 SYTL2 RAB3B APOD VCAN MT2A CST3 CREB5 ATP2C2 HTRA1 SNAP25 MTRNR2L12 GPR56 MT-CO1 MRAS CLU ATP2B4 MTRNR2L8 TALDO1 GAPDH DNAJB6 LMO4 MFN2 FA2H HSP90AA1 PSAP SEMA5A SLC7A5 ETV1 CPE NCALD CDC14A SUMO2 RPL37A ASAP1 SCAND1 DUSP6 MT-ND2 CTNND2 CSPG4 RGS12 INSIG1 SLC22A17 MARCKSL1 MT-CO2 SOX6 TSPYL4 SOX10 RAB2A ATP6V1C1 ACTG1 EDIL3 CA10 CLIP3 PLEKHH2 SCD5 CMTM5 MT-ND4 PSMA7 RP11-139K1.2 MT-CYB BCL6 TSPYL1 FAM134A UBE2E3 CHGB KIAA1211 RAD23B ATP5I CDH13 COL11A1 NAT8L COMMD6 EIF4A2 QKI C6ORF1 GNAQ NDFIP1 SLC2A1 NDUFS6 RAMP1 TLE4 SIRPA KLC1 GPRC5B SLC6A1 CSDE1 PNP SPARCL1 FGFR3 PSMD8 RTN3 LUZP2 FKBP4 PAFAH1B2 SMOC1 ATP1A2 STMN1 UBA1 ARPP19 ERBB3 DDR2 KCNK2 SLC40A1 SOX2 ELAVL4 HEPN1 ALDOC ITPR2 MT-ATP6 ATP2A2 SLC1A2 SULF2 EIF1 MRPL52 CALM2 OLIG2 RPL17 CTD-2026G6.3 RPL17-C18ORF32 NR1I3 GABARAP MIF C3\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "oligodendrocyte precursor cell" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MTRNR2L1 MT-ND4 MT-ATP6 SCD5 MT-CO1 RAB3B MT-CO2 PDGFRA PPAP2B MT-CO3 RP11-111M22.2 ZBTB20 MT-CYB MTATP6P1 MT-ND5 APOD RAB11A CHL1 SOX6 SNAP25 PTPRZ1 TUBB2B RAB31 CLSTN1 PRNP SCOC SULF2 RNASEK-C17ORF49 PBX3 GPX4 SFRP1 ZFP36L2 PAFAH1B2 HEY1 RAB40B ATP6V1G1 DUSP4 RIN3 RPL35 CALM2 RPL10A VCAN TMEM130 TRIB2 BLOC1S1 NRCAM SERPINE2 BIRC5 SEPW1 ENPP2 GNG12 PROM1 ETFB MAP4 DPP6 SPOCK3 ATP6V1E1 MAF FERMT1 SLC1A3 TXNIP EIF1AX TENM1 LUZP2 ATP2A2 CHST8 MT-ND2 CADM3 SCN1A ETV5 CDCA7L POLR2M TOMM20 TUBB2A IGSF21 SOX2 CKB SPOCK1 SHARPIN CAMK2G PCDH19 NTN4 OLFM2 SNX22 RPL36A ERH NFIA CREB5 COL20A1 LHFPL3 COX6C TLE4 BTBD10 C1QL2 GABARAPL2 CA8 CNP GPR56 RNF152 DYNLL1 ZFHX4 CDC37 MTRNR2L12 MTRNR2L6 DISC1 MTRNR2L8 ALDOA RP11-219A15.1 RPS10 HNRNPA1P40 PCDHGA6 PCDHGA5 PCDHGA10\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "oligodendrocyte precursor cell" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: VCAN PTPRZ1 PCDH17 PTN OLIG1 MTRNR2L12 SNAP25 ERBB3 CLU METTL7A SCD5 RAB3IP SCN1A MT-CO2 APOD MT-ND4 SPARCL1 RP11-111M22.2 NFIA VEGFA MT-CO1 HEPACAM TRIB2 FAM84B NDUFS5 SELT CTSD TIMP3 ATP5G3 TUBB2B MORF4L1 ACTG1 MT-ATP6 OLIG2 RAB31 COL9A1 PTPRS PPAPDC1A ENO1 YWHAZ PTPRN2 PPM1A FAM111A FKBP8 ADAMTS1 NDRG4 GPR56 SLC38A1 TSPAN7 RHOA MTRNR2L8 RAB4A FAM134A DNER KCNAB1 ACTB FIGN ASCL1 FASN PREX2 PGK1 PPAP2B ATP13A4 PRKACB SLC1A2 CRISPLD2 REPS2 ATP2B4 UQCRB AKNAD1 WNT5A SPP1 SLC6A1 S100B KIF21A CST3 NAT8L ARL6IP1 DUSP6 ITM2B NRCAM RPL13 KRAS ID2 PHYHIPL PID1 WIPF1 CFL1 BCL6 NAP1L3 CCT5 PGAM1 CD9 PLEKHH2 ALDOC HTRA1 DNAJC21 TBC1D15 KLC1 PCDHGA10 PCDHGA6 PCDHGA5\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "oligodendrocyte precursor cell" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: PLP1 NFIA SCD5 GPRC5B CNP MTRNR2L12 TF MT-CO2 MT-CYB MTRNR2L1 ASIC4 MT-CO1 SMOC1 POLR2I SCG2 TMEM144 GPR37 MT-ND2 GPNMB PTPRZ1 GPR37L1 MT-ND1 TBC1D15 RPL35 FAM107B ZNF536 BEX4 CHST8 MT-ND4 MYO10 PLCXD2 CDK5R1 CHCHD2 SFRP1 OST4 RABAC1 ACTG1 SCAND1 FSCN1 PTGDS GAPDH PTPRN2 PCSK5 BAI2 QKI RGCC KCNAB1 MT-CO3 PSD3 NDFIP1 COL9A2 PET100 GPM6A RPL23A COX4I1 FOS PCDHGA5 LIN7B FAM134A ITM2B GNB1 MAP7D1 INSIG1 TGOLN2 TXNIP ZCCHC24 CRYAB ARPP19 SOX4 MOBP ATP5I TMCC3 SLC22A17 ATP1A2 PPP3CA EDIL3 SEPT4 LHFPL3 ADSS CPE YWHAQ VCAN HIF3A COX5B NDFIP2 C6ORF1 HSP90AB1 EVI2A TMEM63A MBP GYG1 RPS28 MLLT11 CALM1 DPYSL2 PSMB7 BAALC GRIK1 TMEM123 LRRC59 CORO1B ATP1A1 APBB1 APP MYRF RPL13 IFI35 FXYD6 MTRNR2L8 PROX1 SERPINE2 SCD CRIM1 MT-ND3 RPL11 RPL26 RPL36A RTN3 EPS8 OLFM2 GFAP COPS8 ETFB SEPW1 TMA7 CLMN TUBD1 CADM2 STMN1 SNRPE NUDT4 MTRNR2L6 GTF2H2C_2 RP11-219A15.1 HNRNPA1P40\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "oligodendrocyte precursor cell" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: PTPRZ1 QKI MT-ND3 PTGDS SYT11 APOE CD63 SYTL2 NACC2 SLC1A3 GUK1 CHN1 EML3 MT-ND4 MRVI1 COL9A2 TRIB2 FGFR3 RAB3IP GPR98 SCD5 MT-CO3 TSPAN7 MAPK1 BCL6 CSPG4 RAP2C THYN1 NDUFS5 LINGO1 RTN1 SHISA6 BAD SUMO2 RAB3A GAPDH SLCO1C1 LSR ITM2B C6ORF1 OLFM2 CIAPIN1 MGST3 PPP1CB PMP2 MT-CYB PDP1 MARCKS GNG2 INSIG1 MT-CO1 GPRC5B DCLK1 PNMA1 EIF1AX ENC1 RPL38 COA3 HILPDA SYT4 MAFB SPARCL1 RTN4 CDC37 MAP1LC3A RP11-20I23.1 TRIM36 STXBP1 ACLY FTH1 COX6B1 PJA2 BRK1 CLSTN1 C19ORF53 MAST3 RHOB MYEOV2 SIRPA FGF2 ALDOC OAT MRPL15 HEPACAM IDH3A SULT4A1 ABHD14A PRKCB PPA1 TMEM123 BEX1 FKBP8 TMEM160 ELAVL4 ID2 CLU POLR2J GSTT1 CAB39 RPL26 BCAP31 PHYHIPL GSK3A EDIL3 METTL7A SMIM12 PPAP2B SLC39A12 COL20A1 CYC1 FAM3C GJB6 SLC6A1 DNER AGT ATP6V0C ID4 NCBP2-AS2 MT-ATP6 PAMR1 SLC35B1 SLC1A2 GRIN1 GLUL MT-CO2 PFKP MT3 MT1E VAMP2 NDRG4 MAP2K2 CACNB1 COL15A1 UBC PGRMC1 CHI3L1 MT-ND4L MAPK8IP2 SELM DPYSL2 GJA1 HSP90AA1 NDUFA12 NPTXR GDI1 TUBB3 RPS15 RPL17 RPL17-C18ORF32 IDS TUBB RPL7\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "oligodendrocyte precursor cell" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: PTPRZ1 SCD5 RAB3B HTRA1 VCAN TF OLIG2 MARCKS OCIAD1 MT-CO1 MTATP6P1 OLIG1 SPOCK1 CNTN1 ZBTB20 MT-ATP6 PCDHA10 ALDOC RP11-111M22.2 TUBB2B EDIL3 PCDHGA10 BIRC5 ZNF385D NFIA SLC6A1 TIMP2 SYT11 MT-ND3 MT-ND1 CIAPIN1 PLEKHH2 MTRNR2L1 NDUFB7 SPTBN1 TLE4 GPR17 KLHL5 LMO2 MT-ND4 HSP90AB1 MTRNR2L12 PCDH15 LHFPL3 LANCL1 SLC22A17 COL20A1 RPL35 FIGN GPM6A DNER FERMT1 SEMA5A KCNA2 ATP1B2 DLL3 MT-CO3 SLC1A3 PGK1 BSCL2 NDUFA5 LUZP2 NCAM2 PPDPF RPL35P6 MAL IDS SOX6 SERF2 AEBP1 DPP6 CDH13 TMEM14A COPE RRAGA MZT2B PTMA PTGES3 ACTB CD99L2 RPL21 PREPL PROX1 PPAPDC1A SLC17A7 TPPP GPNMB PDE1C SEPW1 EML3 PREX2 NCKAP5 RPS2 TMEM70 CLU PEA15 PPP2R4 S100B GPR37L1 ARHGDIG VSNL1 MYO1B PON2 TMSB10 CNP DUSP1 SOX2 DKK3 CD9 PRDX2 CADM3 RGCC CADM2 ISCU NPAS3 ATP6V1A SYT17 LDHB SHC4 MFSD6 GFRA1 NDUFA12 MT-CYB NACC2 FGF12 THOC7 THYN1 RPL13 CALCRL RPL32 KIF25 RHOJ NGFRAP1 MARCKSL1 KCNK1 ATP1A1 VPS35 FBXW11 ZCCHC24 CCK ZNF365 PPIH PRKAR1A CALM2 TCEAL3 KCNAB1 SPARCL1 KLC1 GPR158 ERBB3 PNMAL2 EPAS1 CHCHD2 SNCA SNAP25 COL9A2 RPL23A GLO1 FKBP8 TTYH2 EHD3 CLSTN1 BCAT1 TSPYL1 CA10 CDC42SE2 ATP5I MTRNR2L6 YJEFN3 MT1X UBE2M S100A6 IDI1 CRISPLD2 CHL1 C19ORF70 C14ORF2 NDFIP1 RAB1A RTKN PGRMC1 OPCML YWHAB OLFM2 MEGF11 PTGDS TMSB4X IFI16 COMMD6 MED10 ITM2B COX7C MBP NKAIN4 WIPF1 PMP2 ETV1 KIF19 PRDX1 PTN CAMK2G ZFHX4 COL9A1 SOX11 GAPDH RPS28 BRK1 ARPC4 NDRG2 PPP2R1A SARAF CALM1 ACTG1 PCDHB4 FAM3C GPCPD1 SUSD4 DEXI CISD1 MT-ND4L RNA5-8SP6 GSTP1 SLIT1 TRIB2 MAP1B SPOCK2 MT-ND5 COPS7A LMO4 CABP1 PDGFRA ASAP1 FXYD6 PEBP1 BAI2 WSCD1 THY1 RAB3IP ATP2A2 PPAP2B RGS12 COL11A1 TNS1 ATP5G3 C18ORF32 GNB1 TSKU MTUS1 FSCN1 NKX2-2 TMEM35 ALKBH7 RAB2A COX4I1 LRP1B QKI PCDH17 FGFR3 PSAP OLFM1 KIF1A GPR26 CFH RNASEK-C17ORF49 FTH1 MRPS28 B2M OPRM1 TUBB TBC1D15 SYTL2 PLEKHD1 ARFGAP2 ESCO2\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "oligodendrocyte precursor cell" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: RPL37A PTPRZ1 CST3 GPM6A RPL23A NKAIN4 ATP5E DNAJC6 NDFIP1 UQCRB GPNMB TMA7 PRNP PTGES3 MT-CO2 GPATCH4 RAB3IP RHEB RP11-111M22.2 VCAN CD63 TMSB10 C1D AZIN1 PGRMC1 LDHB C1QL2 NPTX1 MZT1 SCD5 RPL41 APP ERH PDGFRA CCND1 CRIP2 DNAJB6 TENM1 SEZ6L ATP1A2 NXPH1 PRKACB RPS27A AES TMEM132C RPS15 BASP1 CNTNAP5 CMAS RTN3 RFK GRIN1 APOD PMP2 UROS SEC61G DNAJC5 RPL31 FABP5 ACTB GPX4 ATP5I FAM69C ENO2 RAB7A B3GNT7 RPL38 SLC39A10 HOMER3 FXYD6 SLC40A1 ATP2B4 MT-ATP6 ASIC4 PIP5K1B RAB6A EXTL2 RGS4 CYFIP2 GRIK1 SNAP25 NARS NUP37 TRIM47 ACTG1 C7ORF50 PRDX2 VAMP5 FIS1 RPS26 FIBIN JUN MAPRE3 TUBB2A UQCRFS1 APLP1 MT2A SCN3B BCHE QDPR MTX3 TIMP1 SCN1A NPAS3 MT1M MAL2 PSMD8 MAPK1 RTN4 VEGFA FAM84A NUAK1 CHL1 RPL3 GNG3 PPAP2B PRKCE CALM2 TSC22D4 METTL7A SLC1A3 TPI1 MARCKS QKI ATP1A3 SYT1 GUK1 SLC25A4 VSTM2A DPYSL2 APLP2 EID1 BAALC MRAS GDA CTNNB1 SERPINI1 RRS1 SERP2 NRCAM CAMK2D GADD45B ASB13 GAPDH BEX1 NDUFB2 PTPRT NGFRAP1 VWA5A GPR56 FSCN1 RPS12 SIRPA SLC39A3 SLC1A2 TUBA1A YWHAB ATP2B2 RPS28 FTH1 ARFGAP2 ALDOA RPL12 MTFP1 RPL26 GTF2H2C_2 ESCO2 SYTL2 RAB3B ZNF385D HNRNPA1P40 PLEKHD1 PCDHGA10 PCDHGA5 PCDHGA6 PCDHA10 PCDHAC1 PCDHA9 PCDHA4\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "oligodendrocyte precursor cell" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: GPM6A ZBTB20 NFIA MBP DPF3 TOMM20 SPATA13 PRDX1 SLC24A2 NR1I3 HNRNPA1P40 SYTL2 RAB3B ZNF385D SNAP25 MEGF10 MT-ND4 SEPP1 ITM2C SCD MT3 RGCC ASCL1 CREB5 RASGEF1B RAB6A PPP2CA QKI FSCN1 TOMM7 TMEM144 GPR37 ARL8A FAM84A KIT SEMA3B MAP1B CNDP1 TXNIP ATP5C1 GNAQ NUTF2 CSPG4 MT-CO2 MT-ND5 COL4A5 PHYHIP CSRP1 TMSB10 NKX2-2 PPAP2B DNAJC6 DGKG SOX10 SPARC CADM2 FTL MT-CO3 FBLN2 DNER FTH1 SH2D6 OXR1 PPAPDC1A GADD45GIP1 CARNS1 NFE2L1 RPS15 RP11-111M22.2 ATP6AP2 BEX4 VCAN PLD5 STUB1 MT-ND2 MAPRE2 PRDX2 ZCCHC24 CYB5R3 TMOD2 EIF4A2 PVRL1 OLIG1 PDE1A NECAB1 RAN PRKAR1A MT-CO1 FGFR3 UBC RAD23B MAL PTPRZ1 BIRC5 DISC1 NIPA1 TBC1D15 AC244489.1 PCDHGA6 PCDHGA5 PCDHGA10 DNAJC21\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "oligodendrocyte precursor cell" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: SCD5 MTRNR2L12 MT-ND4 TBC1D15 MT-CO1 MT-CO3 MTRNR2L1 PSAP PTPRZ1 ZBTB20 APOD GPM6A MT-ATP6 MT-CYB NFIA PGD ZNF385D MT-ND2 CLSTN1 RPS28 PDGFRA PPAP2B STON2 COL9A1 MORF4L2 MT-CO2 TGOLN2 SPOCK1 TOMM70A GPNMB OLIG1 CCDC69 LMBR1 MEGF11 C3 ADCY10P1 HMGCR COL11A1 METTL7A COL20A1 TBCA OLIG2 POLR2I TLN2 ITPR2 IQCK CPE ADAM23 CACNA2D2 RAMP1 CORO2B SYT11 FXYD6 SLC1A2 OPA1 CKB MARCKS QKI PHYHIPL FSCN1 CAPZA2 CLIP3 NECAB1 CREB5 FTH1 PDE3A BAG4 RAB2A DGKG BST2 SLC19A1 PLEKHH2 CFH SLC2A1 GPR37L1 ATP6AP2 TIMP2 GAPDH EIF4G2 HTRA1 IQSEC1 CADM3 RPS2 DNM3 PCDH17 RAB3IP FGFR3 CDK5R1 MAPKAPK2 MTATP6P1 CTBP1 VDAC1 FCGR1B MASP1 PGK1 TSPAN7 CHN1 PPP2R4 SPARCL1 LUZP2 ALPL MTCH1 SERINC1 UBC KLC1 GORASP2 RAPGEF5 RP11-195F19.5 LYPD1 SLIT1 COTL1 SOD1 GPX1 SPP1 VEGFA PMP2 GDI1 PLCB1 TF HNRNPA1P40 MTRNR2L6 NR1I3 RPL21\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "oligodendrocyte precursor cell" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MT-ND4 MTRNR2L1 GPRC5B ZBTB20 MT-CO2 PPAP2B CPE ACSS1 GAPDH SLC1A3 CLU AQP4 AGT TF BAG4 RPL3 SERPINE2 MT3 MT-ND1 RAMP1 PTPRZ1 MT-ATP6 RHOB MTRNR2L6 NAT8L SLC14A1 RPL15 PSAP PPDPF NKAIN4 PGK1 RNF11 PTN UQCRB SEMA3A SPON1 RAB3B RAB31 LYNX1 ACTB SERP2 MARCKS NDUFB11 GJA1 PGAM1 APOE SNCAIP ZFP36L1 RPL31 AHNAK CNTN1 GADD45B ATP6V1A MAGED1 PTPRM KIF21A TMEM150C SEPW1 SLC7A2 LMO3 CALM1 PEBP1 SLC39A10 SELT ITPR2 RAD23B TLN2 S100B HOMER1 NPTN C10ORF54 SSTR2 GPX4 S100A6 GMPR GPR56 NDUFA11 NRCAM MTRNR2L12 FGF2 MAF FGFR3 UQCR11 COL9A1 ATP1B2 ATP6V1C1 VDAC1 RP11-111M22.2 CSPG4 RPL12 PTMA MZT2B GPM6A RPL23A CKB CTSD MBP COX6B1 MT-ND2 CRKL ARHGAP35 RPL26 RPL35 TMEM123 MT-CYB MTUS1 MTATP6P1 TIMP3 SLC1A2 SOX6 RHBDD2 MT-ND3 ITM2C TMSB4X SLCO1C1 APP PPM1A COL6A4P2 HMGCS1 CYP27A1 SYTL2 RPL32 NID1 HIF3A MT-CO1 ZNF385D CD59 MT1E TSC22D1 YBX3 ALDOC HSPA2 PCSK1N ARL6IP5 HSP90AB1 PNMAL2 AC011043.1 GNAQ SCD5 NFIA NDFIP1 PDGFRB UQCRQ ITGB4 C10ORF10 IGFBP7 SNAP25 CFH RPS3A PCDHGA5 PCDHGA6 PCDHGA10 TBC1D15 DNAJC21\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "oligodendrocyte precursor cell" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: SCD5 TBC1D15 PTPRZ1 OLIG1 SYTL2 MTRNR2L1 MT-ND3 PTN MT-ND4 LINGO1 MT-ND2 ITFG1 ZBTB20 MT-CYB SLC6A1 BCAS1 ATP1B2 PLEKHH2 NDRG2 KIF19 VCAN FTH1 RPS15 PMP2 ACTB HMP19 RPL13 GAPDH NKX2-2 SNAP25 PTGDS MT-CO1 PDGFRA SLC22A17 MT-CO3 GPNMB RAMP1 RAB6A FSCN1 SYT11 MT-CO2 QKI MSMO1 KCNA1 SPATA13 NPTXR NDUFB8 CHL1 CST3 NDUFV1 NFIA GLUL CALM2 UBA1 NAP1L3 NTNG2 PCSK1N ATP5E IDI1 SOX21 TRIL TOMM20 WNT5A MARCKS THBS2 SCN1A SEMA5A TLE4 GRIK1 TAGLN3 PDLIM5 TMEM100 NGFRAP1 SMOC1 PPP3CB TMSB4X MBP APBB1 DNER CNTNAP5 PHKG1 GTF2H2C_2 RP11-139K1.2 FXYD6 KLHL12 ATP5H PCDH15 WASL PLOD2 SGK223 GNAQ TSPAN7 LRP4 HTRA1 ALCAM EDIL3 TXNIP PCBP1 CDKN2C SERPINE2 PGM2L1 GRINA CPE BANF1 HSP90AA1 SPCS2 MARCKSL1 PTMA ASIC4 ENO1 MT3 SHISA6 MT-ND4L ESYT1 SRM CAMK4 PTPRS ATP1B1 MT-ND1 PIK3R1 NAT8L RPL8 ETV1 DEXI PPDPF RPL38 THSD7A ENSA NRCAM HSPB1 ZNF365 TCEB2 DPF3 APLP2 NDFIP1 RPS28 UBE2L6 MFGE8 ZNF880 BCHE MRPL52 RHEB FAIM2 RPL32 VEGFA RPS10 TSC22D1 COPS8 PEG10 HIF3A ARHGAP42 PRNP APOL6 SYNGR1 ATP6V0E2 KIF1A MT1E CERS6 PHYHIPL MYOM1 CSPG4 ZFAND5 PET100 TOMM70A CYFIP2 GPM6A CHADL MDH2 FABP7 NDUFS5 PDE1A UQCRB OAZ1 HES4 MZT2B MRPS21 TALDO1 CLSTN2 MT-ATP6 ARF5 COX14 SHD ASAP1 CCDC121 SRP14 ATP5F1 ALDOC SLC25A4 SNAP91 THY1 ATP1A1 RP11-20I23.1 B2M MTRNR2L6 ATP6V0C HNRNPA1P40 PCDHGA6 PCDHGA10 PCDHGA5 RAB3B CFH TF\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "oligodendrocyte precursor cell" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MT-CO2 RAB3B PTPRZ1 MARCKSL1 MT-CO3 NFIA HIF3A MT-ND2 RAB3IP TUBA1A VCAN MT-ATP6 JUN CMTM5 EIF4A2 MT-CYB PDGFRA MT-ND3 PSAP CLIP3 SUB1 HTRA1 ATP2B4 SPARCL1 MT-ND1 ANAPC11 COL9A1 MT-CO1 SCN1A ATP6V0E2 ATP1B2 QKI TF IDS SERF2 VPS35 WBP2 PRDX2 LYPD1 CAMK2D OLFM2 APOD ATP5A1 ZCCHC24 DOCK10 SERINC3 ERBB3 ELMO1 SOX4 B3GNT7 MEGF10 PTGDS UBA1 ACTG1 TXNIP ASIC4 ERBB4 ENO1 RPL32 SOCS3 SNX22 GPR17 PSMD2 TPT1 RAD23B FKBP1A RPL13 PPA1 MT-ND4 ACTB SLC1A2 SRM FOS ZBTB20 FAM131B METTL7A PEA15 WBP11 RPS28 TMEM147 CTNNA2 CALM2 ATP1A2 PRELID1 GFRA1 OLFM1 FAM84A RPS4X MTX3 RIN3 PTPRN2 ATP5F1 EIF1 GPR56 TMEM200C DYNLL1 MFSD6 CHCHD2 MAP7D1 CD63 ATP5I MARCKS EIF5A2 CD59 SRP14 RTN4 GYG1 ZFP36L1 COL11A1 SMAP2 MAP4 SSPN NOP10 LUZP2 ATP5G1 SYT11 MYEOV2 CLSTN1 OLIG1 ITFG1 TSC22D4 TMEM179B PCDHAC1 PRRX1 ATP2A2 BCL6 SLC6A1 MT-ND4L OLA1 DNER PLIN3 ITPR2 POLR2J S100B SCD5 RP11-111M22.2 ALDOC ITM2B GPM6A SKP1 KCNF1 MRPL51 IDH3A ATXN10 PVRL1 UQCR10 CRISPLD2 ATP1B1 IQSEC1 CKB GAPDH PIK3R1 CDH8 LRP1B PET100 C1QL1 BSCL2 DISC1 NUDT4 B2M PTCHD4 RP11-219A15.1 AC244489.1 NR1I3 LINC01296 PCDHGA6 PCDHGA10 PCDHGA5 TBC1D15 DNAJC21\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "oligodendrocyte precursor cell" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: PTPRZ1 SLC1A2 GPNMB RAB3B SYTL2 VCAN SQLE ZBTB20 CLU RTKN OLIG1 RABAC1 C18ORF32 BCL6 MDH1 NRCAM MEGF11 ASIC4 CALM1 SNAP25 RAB3IP PCDHGA5 SCN1A PIEZO1 SCD5 CD99L2 RPL39 CSDE1 DLC1 ARHGAP29 ZCCHC24 MT-ATP6 CSPG4 TUSC2 HMGB1P35 METTL7A CTC-575D19.1 ZFP36L1 LUZP2 SPOCK1 PCDH15 CTBP1 THOC7 GPM6A TENM1 PRKACB MTUS1 KCNA2 BIRC5 SOX6 PDE9A TOMM20 COX7C FTH1 PPAP2B HS6ST3 RHBDD2 LRP4 SYT17 NDRG2 DNAJC6 ARL6IP5 SOX2 DOCK10 COTL1 CPE CTDSP1 TGOLN2 MRPS21 PID1 PDGFRB RPL11 PDLIM5 NDUFAF2 NKAIN4 NFIA APOD EDIL3 PTN DNER KCNJ10 GNG12 RP11-111M22.2 HRK CHST11 BAALC COL5A3 PPAPDC1A RPL13 TMSB4X EIF1 VDAC3 HNRNPH2 REEP2 PHYHIPL TERF2IP ZNF536 OLIG2 NDFIP1 ANGPTL2 CCDC152 UQCRFS1 IPCEF1 PGK1 DGKG ATP1A2 OAZ1 EHD3 DPYSL2 SLC1A3 UQCRC2 MARCKSL1 SOX4 FABP7 FAM84A PPP2R4 MAGED1 ETV1 NACC2 NDUFA2 SMOC1 COL9A1 MTRNR2L1 ACTG1 MTCH1 PPIA LMBR1 TF SYT11 MT2A NPAS3 GRAMD3 PDE3A ETV5 MARCKS PARP4 ATP5A1 RP11-20I23.1 RPS15 LINC01296 MIR6723 MT-CO1 ATP6V0C RP11-219A15.1 GTF2H2C_2 DNAJC21 TBC1D15 ZNF385D\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "oligodendrocyte precursor cell" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: HTRA1 QKI ZBTB20 MT-CO2 KIF5A MT-ND4 VCAN NFIA GPM6A MT-CO3 RP11-111M22.2 COX7C BCL6 PLEKHH2 GAPDH MT-CO1 MT-ND3 SCN1A PLP1 CADM2 MT-CYB COQ10B SERPINE2 ELMO1 PTPRZ1 SMOC1 ZNF385D RAB3B SYTL2 ARFGAP2 WNT5A ARPC4 MAP1B SLITRK1 PAQR8 MTRNR2L12 FERMT1 MTRNR2L1 SNRPE TMEM123 SOX6 CMTM5 GUK1 LPPR4 VEGFA ATP6V1E1 CKB ALDOC ITM2B EGFR ATP5B SLC38A1 MT-ND1 PPP3R1 GPR37L1 BCAS2 CLU RPL13A RPS28 NAT8L MMP24-AS1 COL11A1 SEMA5A GPR56 GRIK1 PPP3CB UHMK1 SCG2 PCSK5 ATP6V0E2 MAPK1 TSPYL1 TMEM132C DUSP1 ITPR2 WIPF1 TENM1 PARP14 BEX1 FTH1 DPP6 PSAP PCBP1 VPS35 KCNAB1 YWHAZ CSPG4 MAPK8IP2 ACTG1 VAPB PLD3 ASIC4 TCEB2 SELT INPP5F PNMA1 CTNNB1 DNAJC6 EIF1AX RAB2A UROS FTL RELN OLIG1 CALM1 USP5 MBP RANBP1 HIF3A NRCAM TMEM59L RAB31 RAB3IP LMO4 PRUNE2 FAIM2 PRKAR1B MRPS28 ONECUT1 RPL21 RHBDF1 ATP1A1 ATP6V0C BSCL2 RP11-20I23.1 PCDHAC1 PCDHA9 PCDHA10 PCDHA4\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "oligodendrocyte precursor cell" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: PTPRZ1 RAB3IP SLC1A2 CKB RAB3B ZNF385D FGFR3 CALN1 PON2 RPL13A ZBTB20 NFIA CLSTN1 RPL41 NACC2 GAPDH OR6D1P VEGFA FAM89A MARCKS TRIM47 TF ADAD2 IMMP1L TSHZ2 FGF2 PGRMC1 GNG12 B3GNT1 PMP2 PPAP2B SLC22A17 MEGF11 HSP90AA1 ZFP36L1 ARX PPP2CB ITPR2 CDH19 SGCD SULF2 RPL10A PIEZO1 WIPF1 MT3 CTC-575D19.1 GPR56 IFI16 SLC2A1 PODXL RPL23A EIF4G2 RCAN2 RGS12 DOCK10 PLP1 ACTB RPS10 HEY1 YWHAG NCKAP5 SLC6A1 CDK17 EDIL3 ASCL1 CHL1 RHOJ MAF BSG COL9A1 DUSP1 SCOC SERPINE2 SLC7A2 KAL1 PSAP VCAN GRINA SOX21 SCN1A CAMK2D ALCAM MDH1 KCNJ10 PCDHB4 DIO2 CD24 EGFR PTGES3 DISC1 CFH GTF2H2C_2 TBC1D15 DNAJC21\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "oligodendrocyte precursor cell" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: RAB3B SCD5 PTPRZ1 NFIA CLU ARL6IP5 RPL13 SLC1A2 NXPH1 RAB3IP PMP2 CREB5 CHL1 ITM2B PLP1 MT-ATP6 ZBTB20 GRAMD3 RPL41 SNX22 GNB1 MT-ND4 CLSTN1 ACTB CFH NDUFS5 METTL7A SGCD ATP1A1 SNAP25 LMO2 EIF1AX ATP13A4 MT3 GSG1L MT-CO2 C1QL2 SULF2 PPP2R1A PHYHIPL PBX3 OLIG2 VWA1 PPAP2B TRIB2 PPFIBP2 RPS12 PTMA WFS1 ELMO1 THYN1 ERBB3 CLDN10 CTNND2 CPE CALCRL COX6C ARHGAP6 HEPACAM OR6D1P GPNMB UROS TDRD7 CDK5R1 NOTCH1 PREX2 SEPW1 NPTN ATP6AP2 UQCRC2 HEY1 TPT1 GPM6A MYO16 PNKP NAPA VDAC1 IGFBP5 PTPRN2 ARL6IP1 HS6ST2 SMAP2 THBS2 MTRNR2L1 PTPRS PTPRM COL6A1 SPARCL1 RP11-219A15.1 COX5B TMEM59L ATP1B2 TBCA MT-CO3 SPOCK2 ISCU DNER UQCR10 RP11-111M22.2 CST3 POMP OLIG1 HSPA2 MEGF11 DOCK10 HSP90AB1 EHD3 SRP9 LPPR4 FXYD6 HOMER1 LRP1B SKP1 SLC6A1 COX7A2 MAPK1 HMGCS1 PCSK1N MORF4L1 ANKRD18A FAM127A RPS28 LUZP2 RAB6B KIT UQCRB GPR37L1 COL4A3 SHISA6 SLC19A3 NACC2 GAD1 SUMO1 CA10 SHD QKI COL5A3 ELAVL4 PSAP TM2D3 MT2A HNRNPA1P40 TUBB ALDOA MTRNR2L6 THY1 GTF2H2C_2 RPS26 SYTL2 TF TBC1D15\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "oligodendrocyte precursor cell" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MT2A CALM2 BSG GADD45B UBC PTPRZ1 B2M UQCR10 APOD HSP90AA1 HNRNPA1P40 RPL7 TMSB10 RPL12 TPT1 RPL35 RPS6 FBXO8 HMGCR GPNMB CSPG4 ISG15 COL20A1 INPP5F RPL6 OAZ1 TM4SF1 MIF ARFGAP2 IFITM3 MAP7D1 SNCB NFIA NEFL ALDOC ARHGAP29 PLIN3 KIF5A COX5B MT-ND2 FOS CFL1 ITPR2 ATP6V1C1 CYCS PID1 BRK1 CDH6 REEP5 RPL11 CST3 TUBB4A TESPA1 PMP2 ACTB FLT1 RPL13 C1ORF52 TIMP3 PRDX3 RPL37A RPL23A COL11A1 NRCAM TMSB4X TSC22D4 PEBP1 EDNRB NRIP3 FAM127A RPS10 RAB11A RPL41 RGCC SLC2A1 LYPD1 GADD45GIP1 ATP6V0D1 CALM1 TUBA1A YBX3 ENO2 MAGEH1 DYNLL1 WLS STUB1 TOMM70A MAP1B ITM2A TUBB RANBP1 SPOCK2 SYT3 SYT11 CDH8 MT1X RAB3C ELTD1 RSL24D1 OR6D1P OLFM1 HDDC2 CSDE1 ENG CCT5 OST4 RARRES3 ZFAND5 RAPGEF5 NHP2L1 GHITM GNAQ PLD3 RTN4 CAMK4 ACTG1 FTL CLDN5 MDH2 C19ORF43 SLC7A5 BIRC5 BAALC PTMA CHN1 SERINC1 EIF1 GPX4 NKAIN4 CYC1 GABARAPL1 FABP5 ADAMTS17 EDN1 ATP6V1E1 RAB6B MT3 ZBTB20 TXNIP PIEZO1 TBC1D15 RAB3B ZNF385D SYTL2 CD59 IFI27 GABARAP RPL21 RPL17-C18ORF32 RPL17 RPL13A\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "oligodendrocyte precursor cell" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: RPL37A TMSB4X FTL RPS10 RPL41 RPL35 RPS27A RPL13A RPS12 RPL31 RPL36A RPL18A RPS28 HSP90AA1 APOC1 RPL23A RPL26 ZFP36L1 RPS3A RPS15 RPL13 RPS2 RPL38 A2M PLP1 CLDND1 PIP4K2A DYNLL1 RTN3 ANLN CCR1 TLR5 RPS6 MT-CO1 CTC-575D19.1 SPP1 RPL8 COX7C MOBP MT-CO2 DOCK10 SLC1A3 LILRB1 TMSB10 C1QA HAMP NDUFA12 RPL3 TXNIP MTRNR2L1 RPL32 PTMA MT-CO3 ACTB MT2A RPL17-C18ORF32 ANKRD18A RPL17 TF CBX6 EID1 RPL15 OPN3 HSPA2 CALM3 ANAPC11 GPIHBP1 SLC24A2 DRAP1 HSPB1 ACTG1 ATP2B4 UBA52 MBP ITGA6 GAPDH RPL11 SKP1 FBXO2 C1QC ABCA8 ATP6AP2 COX7B REEP5 WASL SYT17 CRHBP DNAJA1 GPX4 KCTD12 IL4R THEMIS2 SERF2 MS4A4A FGF2 SLC31A2 MT-ND5 LATS2 JUND RNA5-8SP6 PCBP1 RPL39 KLC1 CADM2 PEBP1 SCD HIST1H2AC HN1 TTYH2 ITFG1 IFITM3 GSTP1 RPS5 CDH8 RPL6 WNT5A NDUFS6 GPR56 MS4A7 INSIG1 GRPEL1 DYNLRB1 CALM2 FAM174A YWHAQ UQCRQ APLP1 CD63 TUBD1 TMA7 NDUFB1 PSMA7 QKI APOE ATP5E PRELID1 RPS4X SYTL2 EIF4A2 CD99 ID2 BST2 SEPP1 KIF21A MYL6 CLU TOMM22 RP11-51O6.1 RPS26 CRYAB NDUFA1 SERINC3 MAF HTRA1 ENPP2 MTCH1 BRK1 CLMN RPL10A NDUFB4 PRUNE2 TOMM7 SEPW1 METTL7A SCN1B RAB3B NUDT21 ATP5O ETS2 RNASEK-C17ORF49 FTH1 OR6D1P RPL21 PLEKHD1\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "phagocyte" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: SPP1 PSAP MT-CO1 MT-CO3 TMSB4X ZFP36L1 SYTL2 MT-ND4 MTRNR2L8 EIF4A2 PLP1 RAPGEF5 MBP MT-CO2 ZFP36L2 PTMA MTRNR2L12 RTN4 ADAM28 ESCO2 ATP6V0E2 SIRPA LYN GADD45GIP1 FAIM2 CST3 PCBP1 VAV1 ATP5E VIM COL4A5 GPRC5B ZNF536 RPL3 C1QC CLTA MT2A METTL7A LMO4 C10ORF54 CDK17 UQCRB RPL7 ELMO1 NFATC2 ETV5 MTRNR2L1 HSP90AA1 C16ORF13 ITGB2 ACSS1 PPP3CA SLC7A8 RPS6 RPL36A APLP2 BASP1 MTUS1 LANCL1 HTRA1 TBC1D15 TRMT112 FSCN1 VWA1 ASAP1 RNA5-8SP6 FTL TMEM123 RP11-111M22.2 FLOT2 SPATA13 EIF1B MT-CYB CREB5 RPS28 RGCC CDC14A AIF1L APOE PADI2 CFL1 LAMTOR1 KLC1 GBE1 LMO2 PRKAR1A IL4R RTN3 ATP1A3 EPS15 ATP6V1G1 RPS2 IPCEF1 MT-ND2 CHADL CASP4 MTG1 CD9 RPL38 MT-ND5 SH3BGRL3 KRAS SLC7A5 OR6D1P CHN1 TLE4 IL10RA ARL2BP GPR37 MT-ND3 QDPR CYFIP2 SNAP25 PRNP CSF1R NDRG2 TPI1 ATP5F1 ANLN MRPS36P4 QKI CSRP1 PAQR8 CTSD RAB3B TRIM59 DISC1 CDC42SE2 RPL17-C18ORF32 RPL17 HNRNPA1P40 TF\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "phagocyte" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: PLP1 FTL MBP TF TMSB4X SPP1 PPP1CB QKI RPL23A YAE1D1 RPS6 EIF1AX SEPW1 DPYSL2 ZFP36L1 PDE1C RPL13 IFI16 SPCS2 HAMP PTGDS MTCH1 CNP PIP4K2A ACTB SERINC1 TTYH2 ARFGAP2 NDFIP2 HEPN1 NUAK1 GTF3A ENPP2 TPT1 TBCA ZFP36L2 MAPK1 SERF2 RPL35 LCP2 THEMIS2 MYEOV2 PPM1A SH2D6 COX6C HSPA2 RPS4X LDHB SLC1A3 NFIA PRNP ATP5G2 ITFG1 VAMP2 RTN4 KIF19 SUMO1 ZBTB20 EVI2A ADORA1 DNM3 SLC25A6 APP IPCEF1 CSF3R C4ORF3 TUBB2B GNB1 ATHL1 PLEKHG1 SOX2 TMOD2 C14ORF132 PAFAH1B2 MAL TXNIP MT-ND1 RPL18A TMSB10 MT-ATP6 KIF1A PTPRS ZCCHC24 INSIG1 DKK3 PLEKHG3 MORF4L1 COTL1 CLDND1 H2AFZ STAB1 FTH1 GUK1 UBC FOXP2 TSC22D1 VAV1 SNCA CD63 IDI1 SEPP1 CA11 SMAP2 CADM2 TIMP2 BCAS1 JOSD2 MAPKAPK2 HHATL CSRP1 CLDN11 MYL6B AURKAIP1 MT2A PIEZO2 FKBP8 PRIM1 SQLE PSAP MRPS21 TGOLN2 SPOCK1 RP11-111M22.2 GDI1 RPS27A SRGN MT1X RPL38 DNAJC6 GMFG GDE1 MT-ND2 CCND1 PDK4 MT-CO1 PHYHIPL RPL6 RPL17-C18ORF32 RPS15 RPL36A MT-CO3 RPL41 RPL17 RPS3A GTF2H2C_2 HNRNPA1P40 AC244489.1 HLA-B TBC1D15 ZNF385D SYTL2 RAB3B\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "phagocyte" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: SNAP25 SYT1 CALM2 RTN1 ATP1B1 STMN1 COX7C TUBA1B PNMA2 DPYSL2 THY1 RTN3 TMSB10 TMSB4X COX6C TSPAN7 UQCR10 HSP90AA1 MT-ND4 RTN4 CALM3 PGRMC1 CKB MT-CO2 PEBP1 SNCA CSDE1 PPP3CA STXBP1 RPS27A GAPDH PLD3 UBE2V2 CADM2 NEGR1 OXR1 ACOT7 TUBB4A VPS35 MAPK1 CHL1 PREPL ATP1A3 POLR2I SERINC1 AES CHCHD2 CLSTN1 SPARCL1 VSNL1 MAP1B FTL PSAP SCD5 APP NRGN TAGLN3 ENO1 SV2B ATP2A2 REEP2 RANBP1 EIF1 SLC39A10 FKBP8 PRKAR1B ATP6V1B2 SLC9A6 POLR2K MTRNR2L1 PRKCB SLC25A5 FAM198B PFKP NRCAM TRIM37 ENC1 ATP9A SCN1A MT-ND3 NSF LGALS1 MAP1LC3A HSP90AB1 TMEM130 KCNK1 ALDOC TUBB4B FSTL5 SYT11 ARPP19 CEND1 CLU YWHAG NCAM2 PCSK1 BASP1 ANXA6 VDAC1 STX1A NPTXR PPIA SLC17A7 UCHL1 PRKACB DCLK1 NPTX1 SYT4 PRNP CALM1 GPM6A GAP43 ARF3 NUAK1 RPL39 SLC22A17 SKP1 STMN2 ARF1 NGFRAP1 MT-ND1 MAP4 MT-CO3 MT-CO1 ACTR10 USMG5 TSPYL4 BEX1 GADD45GIP1 OLFM1 MYL12B SCN3B TMEM59L IDS PDE1A ATP5J C14ORF2 TOLLIP RRAGA RAB3C ETFB NUDT21 SLC7A5 CCK VSTM2L PPP2R1A SUCLA2 TOMM20 CTSD PRUNE2 AP2B1 TRIB2 ZFAND5 RXFP1 ADAM23 EPHB6 INPP5F AP3S1 COX6A1 CNR1 PNMAL1 EFHD2 CFL1 SUSD4 COPS8 TPI1 TUBB3 LYNX1 REEP5 PEA15 PSMA7 TMA7 C12ORF49 DKK3 LIN7B SLC25A6 HPCA TMEM14A ARPC5L GPX4 ATP6V0E2 WSB2 HINT1 ACTG1 PGK1 VDAC3 MT-CYB SLC25A22 NEUROD2 SNCG NEFL MAGEH1 CLSTN2 YWHAZ VIP OXCT1 CAMK2D HMGCR SNAP91 OLA1 COX6B1 ATP6V1A ATP5C1 FSCN1 DPY19L1 RABAC1 MTPN SERINC3 NDFIP2 SNX3 ARL6IP1 STK39 SERPINI1 NDUFS5 HRK NDUFC1 MAPRE3 TUBA1A MT-ND2 ACTB SLC38A1 PFN2 HPRT1 NDUFAB1 CHN1 NGEF OPN3 CLIP3 NDUFA13 MAST3 DNM3 SYN1 UBC NDUFB4 CRYAB EIF4G2 PPP2R2C SPOCK2 SYT17 LMBRD2 UBL5 PEX5L SEPW1 SERF2 ATP6V1F SEC61G AP2S1 SPRN ITM2B PPP1CB RPL17 MYEOV2 MTX3 NDRG3 ATP2B4 ACTR1A YWHAH SYN2 RPL38 PHYHIPL NWD2 CPE LANCL1 NAP1L2 MAP2K1 JUND GLRA2 MANBAL GRINA MT3 PGM2L1 UQCRFS1 GABARAPL2 MTRNR2L6 UQCRH VAMP2 PRDX3 B3GALT2 PPM1A MIF STMN3 KLC2 MMD SST SUMO3 ETS2 SELT SARAF GNB1 NDUFA4 APLP2 SSBP3 CDH7 COX7A1 SLC12A5 CTNND2 PKM SNX10 HTR2A NAPA CMAS PNMAL2 MRPL51 ATP5E NPTN MORF4L2 BHLHE40 NDRG4 NDUFA11 ENO2 EHD3 RPL3 CYC1 RAB3A MLLT11 TUBB2A SNN UBB NUTF2 AP2M1 POMP TMOD2 EPDR1 CREG2 RPL41 SCAMP5 NEFM MRPS28 VDAC2 C16ORF13 SCG2 CAB39 ANXA7 SSTR2 BEX4 CFL2 TM2D3 NMNAT2 C2ORF47 QDPR ATP5G1 DNAJC5 PCSK1N ATP1A1 BCAT1 RAB6B FXYD6 CDK14 APLP1 LRP1B COX4I1 CNTN1 SIRPA PRKCG RPS15 RPS2 GUCY1B3 GRIN1 NDUFAF3 FABP5 RHEB TUBA4A RAB40B TCEB2 UHMK1 C9ORF16 MLF2 SPRYD3 CNRIP1 ATP6V0B NEFH SH3GL2 CAMK4 CHGB RPS26 PPP3R1 NARS RPS10 GDI1 NDUFV1 CRTAC1 SULT4A1 PPDPF RHBDD2 RCAN2 CMPK1 PNKD BNIP3 COX5B FTH1 KIF21A SLIT3 SAP18 NPTX2 SDCBP MTRNR2L12 BSN PAK1 MTCH1 SLIT1 SLC7A8 NGRN RP11-20I23.1 ATP6V0C BSCL2 HNRNPA1P40\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "pyramidal neuron" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MT-CO2 MT-CO1 MT-ND4 MT-CO3 MAP1B CHN1 CALM1 SYT1 SNAP25 MT-ND2 RTN4 RTN1 ENC1 GAPDH PRDX5 SLC17A7 YWHAH PRNP MT-CYB ARPP19 CADM2 NRCAM TUBA1A GPM6A CLU NEFL PJA2 IDS MT-ATP6 OXR1 SCN3B FTH1 CCK TMSB10 MT-ND1 MTATP6P1 SV2B CYCS UQCRH MT-ND3 IPCEF1 APLP2 YWHAZ FAIM2 RPL13 SLC22A17 PNMA2 BRK1 MYL12B TSC22D1 MTCH1 STMN3 PCMT1 OXCT1 RASGRF1 MAPK1 HMP19 OAZ1 ZFAND5 ITM2C SCOC ATP6V1A SERINC1 RPL37A CDK5R1 PSD3 LANCL1 EIF5A2 RHEB CNR1 CDC37 CDK17 NGFRAP1 ATP5A1 VSNL1 KIAA1045 PRKCB CALM2 DGUOK EIF4G2 CSDE1 ARHGDIG KLC1 NSF ABHD8 TOLLIP HOMER1 CLSTN1 DNAJC5 MAP1A CLIP3 BSN ATP5J2 PAQR9 RAB6B ATP2B2 RPS3A ATP1A3 ARL8B TSPAN7 NEGR1 PID1 CALM3 HMGCS1 ACTG1 TUBA1B TLN2 CAB39 NDUFA13 ATP6V1B2 SPARC SNCA NARS RPL41 UBL5 YWHAG ACOT7 HPCA HIGD1A BEX5 MED10 DSTN KCNAB2 OLA1 ATP5B GADD45GIP1 ATP1B1 EFR3A REPS2 ATP2A2 PPP2CB KCNC2 MKX TMEM130 NGEF RAB7A DPYSL2 KCNK1 CTXN1 KIF21A VDAC1 DYNLRB1 GABARAPL1 AP2M1 RPL26 GABRA1 EIF1AX MTPN NHP2L1 PIK3R1 MDH1 PPIA RAB27B GPCPD1 PPP3CB GNB1 TMX4 PIN1 NDUFA11 THSD7A APBB1 MFSD6 DNM3 PGAM1 AURKAIP1 BEX2 PPP3CA BAI2 NDRG4 NCALD CYC1 PELI3 RAD23B CKB RNF11 C1ORF115 CALN1 RAB6A HMGCR NECAB1 ASAP1 VSTM2A REEP5 BASP1 NEFM MTRNR2L1 MET MYEOV2 PKM ERH PFN2 SLC9A1 NDUFC1 PRKAR1B APLP1 ARL6IP5 TUBB2A PPP2R2B CMAS ANO3 SYN1 SLC12A5 PAM TPRG1L CAP2 MRFAP1 STOX1 FGF12 TMSB4X CPE KIF1A ITFG1 ARL1 MAP1LC3A RPL39 PEBP1 TPI1 GDI1 C19ORF43 PSAP ATP5H TSPYL1 PEX5L CD59 NDFIP2 ENPP2 TCEB2 SUB1 STXBP1 CREG2 EIF4A2 DNAJC6 SCD5 DCTN1 KIF3C SNX10 NDRG3 NAP1L3 PHYHIP GPX1 HNRNPH2 NDUFA5 SARAF ALDOA LGI3 SGK223 PNMAL1 CLTC RPL13A CEND1 SDCBP NBL1 TMEM35 TUBB4A RFC3 SEPW1 ZBTB18 RAPGEF5 TOMM34 PRDX1 NCDN PLCB1 NDUFB10 TPT1 MAP7D2 PGM2L1 FBXL16 FAT3 NELL2 NDUFS5 FKBP1A PSMA7 PVRL1 NAPB TLE4 ATP6V1G1 ATOX1 SNX17 FAM174A PACSIN1 SPRYD3 GRIN2A WASF1 CTNND2 ACTB CAMK2D LMO3 NDUFA8 FXYD6 VAMP2 EHD3 MAP2K4 NAP1L2 SUMO2 FIGF ATP5O NRGN SPTBN1 TMOD2 CNGB1 CABP1 GNAQ DKK3 MSMO1 CCDC85B PI4KA DCTN3 RGS4 FTL OPA1 TEX2 UBE2M TIMP2 PGRMC1 BTBD1 ZNF365 KLHDC3 NIPA1 EGFL7 MRPL55 SNX3 SLC25A22 CNTN1 RAP1GAP2 ATP1A1 OCIAD1 PTPRN KIF5A RHBDD2 TUBB4B JUND PPP1CB TMA7 OLFM1 RAB11A RAB3A TMEM59L FKBP8 WDR47 ATP6V1G2 NGRN RP11-20I23.1 GABARAP RNASEK-C17ORF49 RPL18A TUBB3 ATP6V0C MTRNR2L6 MBOAT7 RPL21 PCDHA9 PCDHAC1 PCDHA4 PCDHA10\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "pyramidal neuron" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MT-CO1 MT-CO3 CHN1 MT-CYB MT-CO2 CLU SYT1 CCK SPARCL1 MT-ND1 RAB6B RTN3 CALM3 MAP1B MT-ND2 RTN4 FAIM2 ENC1 GAPDH CALM1 MT-ND3 MTRNR2L12 PRNP BEX2 ATP2A2 MT-ND4 ATP6V1B2 TMSB4X VSTM2L TUBA1B TUBA1A DPYSL2 RBX1 NRGN MT-ATP6 OCIAD1 CA10 YWHAH GDI1 PKM NELL2 CNTN1 LMBRD2 FTH1 HSP90AA1 CARTPT VSNL1 RPL41 TSPYL1 COX7C MAPK1 DCLK1 HSP90AB1 NDUFA4 NEFL POLR2L BAG4 SMIM13 BEX1 CDKN2D FKBP1B GUK1 AURKAIP1 NPTXR BASP1 STMN2 SYT11 ITM2C MTRNR2L8 PPP2CB MTRNR2L1 ZFAND5 KLC1 DNAJC6 APLP1 RGS4 PSMA7 TOMM20 EIF1AX PPP2CA APP SNN ATP6AP2 ATP2B2 SYNJ1 RPL38 GLRA3 ELAVL2 FAM131B CAP2 CADM2 RHBDD2 CCDC85B CLIP2 CRYM SARAF GABARAPL1 PSAP CHL1 SIRPA KIF1A SYN1 SLC22A17 SYNPR CALM2 SNRPN SLC12A5 UCHL1 STMN3 CTSD DHCR24 NBL1 DYNLL1 PHPT1 RPL17-C18ORF32 ATP6AP1 NAPA SNAP25 PEBP1 ADORA1 SYN2 SUMO2 PSMC5 MDH2 CCT5 PPP3CA PCMT1 MMD NCDN SYT4 ATP5J2 ARHGDIG ATRN DNAJC5 CPE SNX10 PTPRN POMP SPOCK1 NRIP3 TCEAL2 DDN COX14 NPTN TXN NARS NHP2L1 GAD1 COX7A2L NDRG3 NEGR1 SYNPO TSC22D1 MDH1 LYNX1 SNCG PDP1 ITM2B CD63 SLC25A22 GAP43 APLP2 KRAS RP11-51O6.1 SLC6A17 LGI3 CLTC ATP6V1A SLC30A3 RAB3A DMTN NDUFB11 FXYD6 C11ORF31 TPT1 C1ORF52 VDAC3 FIS1 SLC17A6 PPP2R2C AP3S1 ATP5E TMEM155 SERINC1 NDUFA13 PTK2B UBE2N KCNAB2 PEX5L PPP3CB DIRAS2 GRIN1 BSG PITHD1 C2ORF80 ATP6V0B C2ORF74 YWHAG VEGFA RPS27A PCSK1 CACNG3 PRSS3 CDK5R1 OLFM1 DIRAS1 SLC39A10 C6ORF1 YWHAB PCSK1N PIN1 C1ORF115 TUBA4A TPPP SSTR1 NDUFV1 COA3 HMGCR THY1 MAP4 AP2B1 EFR3A RAB3C CADM3 HDLBP TMOD2 ZNF385D CABP1 ATP5J REEP5 SLC9A6 STXBP1 UQCR11 TUBB2A PHYHIP COX4I1 NAP1L2 SLC17A7 HOMER1 NDFIP2 SEZ6L2 BSCL2 PTCHD4 ENO1 PDE1C AHNAK2 CYCS ATP6V1G1 TMEM59L PNMA2 PPP1CB NGFRAP1 ATP1A1 CLIP3 SYNGR1 OPCML STMN1 HTR2A ACTG1 SRP9 CFL1 SERINC3 ATP6V1E1 ENO2 PTMA PSMD2 HMGCS1 KIF3C EIF4A2 SYT17 C16ORF13 GDA ARHGAP35 MRPL52 ARL6IP1 DYNC1I1 PAK1 DCTN3 TUBB4A HINT1 TALDO1 NELL1 CNIH3 COPG1 PRKCB OAZ1 NEFM RAB2A EDIL3 SPARC NDFIP1 TMSB10 CLSTN1 ATOX1 RHEB COX6C HPS6 MAPRE3 VDAC2 LANCL1 PRDX1 RP11-195F19.5 CDK5R2 GABRA5 MRFAP1 CAPZA2 NAPB MAPRE2 ATP5F1 ATP6V0D1 HTRA1 YDJC VGF SNCA SEPW1 UQCRQ PPIA ITFG1 RP11-111M22.2 PFN2 RP11-20I23.1 IFI27 MTRNR2L6 IDS NSF ATP6V0C ALDOA MIF\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "pyramidal neuron" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MT-CO3 MT-CO1 MT-CO2 MT-ND4 MT-ND3 NRGN MT-ATP6 SYT1 SNAP25 MAP1B CHN1 MT-CYB THY1 CCK CALM2 ENC1 STMN2 ATP1B1 UCHL1 NEFL GAPDH ARL6IP1 TSC22D1 MT-ND2 GPM6A MTATP6P1 MTRNR2L1 NDRG4 SERINC1 CLTC PJA2 MT-ND1 RGS4 CPE GDI1 YWHAH STXBP1 TPI1 BASP1 RTN1 DPYSL2 FTH1 APLP2 CALM3 OCIAD1 PHYHIP PTK2B TOMM20 DMTN SEPW1 KLC1 MFSD6 PDP1 ARF3 CALM1 MAP1LC3B CPLX2 HSP90AA1 PSAP ATP6V0E2 ZBTB18 HSP90AB1 PEBP1 WBP2 CPLX1 STMN1 KIF1A NDFIP1 PPIA SLC17A7 SPARCL1 NECAB1 MTRNR2L12 CDK5R1 EIF1AX YWHAG NPTN ATP5I NAT8L OLFM1 TSPAN7 TUBB2A ITFG1 MTRNR2L6 SCAMP5 TPRG1L CLIP3 RAPGEF5 GOT1 AK5 ATP6V1A APBB1 AHNAK2 NEFM NCAM2 PGK1 TUBA1B RBX1 TUBA1A OPCML PIP4K2A PFN2 GABARAPL1 PLCB1 CD99L2 MDH1 PRNP CKB PINK1 PRKAR1B SMS DNAJC6 BNIP3 SNX3 RPL37A ANXA6 SNRPN VSNL1 MLLT11 GHITM ARPP19 GSK3A EPDR1 IMMP1L SPOCK1 PSD3 MORF4L1 ATP1A1 SRP14 ACOT7 GNAQ EIF4A2 PPP3CA KIFAP3 NFE2L1 INPP5F ATP2A2 NCEH1 WASF1 CADM2 TSPYL4 ENSA CHL1 APLP1 VPS35 SNCB PRKACB PPP2R4 MTRNR2L8 ACTG1 YWHAB VAMP2 STK39 ACTB PKM RTN4 SNCA AZIN1 ATP5B SLC39A10 IDS EPS15 PTPRN DDN GRIN1 PRKCB FAM163B CACNG3 CEND1 NPTX1 ELAVL4 RPS15 CLDND1 ENO2 SERPINF1 CNRIP1 PHYHIPL TOMM7 ADAM23 COX6B1 PPP2R2C DYNLL1 CHMP4B LINC00116 EFR3A PPP1CB CTBP1 IPCEF1 RCAN2 CHCHD2 MFGE8 CMAS COX6A1 OPA1 RAB11FIP5 ATP6V1C1 SERPINI1 HS6ST2 DDAH1 JUND HSPA8 CFL1 HSPB1 PET100 NAPB RP11-195F19.5 SKP1 HN1 AES TERF2IP NME1 FBXO2 KIF5A SYNGR3 DNAJC5 UBE2N ATP5J2 CCDC25 MAST3 NDUFB1 ARHGAP35 CABP1 RAB3C ELMO1 CERS6 PRKAR1A PTHLH PITHD1 AKAP12 ATP6V1B2 LGI3 MT-ND4L UBB SYNJ1 CLTB NARS SOD1 TUBB4B CDK5R2 SMYD2 AP2B1 NSF DKK3 NAP1L2 FKBP1A TBR1 MYL12B AP2M1 NDUFV1 PGAM1 ACLY RPL26 PTMA FSCN1 RASSF3 NUAK1 ARL8B GTF3A PNMA2 ONECUT2 GAP43 PPP2R1A PRDX2 SYNPR TBCB OLFM2 PREPL C1ORF233 RAB1A PPDPF GPR158 CACNB1 SYT13 COX6C TMEM70 POLR2K CAP2 IQSEC1 NEFH DNAJC21 PARM1 DCLK1 PPTC7 KLC2 NAP1L5 SIRPA BCAS2 MTPN ATP6V0B CYCS EGR1 PSMC5 FAM219A FAM96B CHGB FAM127A DHCR24 SLC9A6 PITPNA PEF1 C1ORF115 SNX10 KCNA2 UQCRH RABAC1 PEA15 BTBD10 RPL32 TOLLIP TAGLN3 APP LYNX1 NAP1L3 PCSK1 SLIT3 EDIL3 VGF DYNLL2 PCMT1 SULT4A1 SCN1A ATP2B2 HMGCS1 CDS1 COPG1 UBC TMSB10 TSPYL1 SYT4 PRDX3 AP2S1 GUK1 SPOCK3 LYSMD2 OAZ1 SLC30A3 PACSIN1 ALDOC DNAJA1 LAMTOR5 ETV1 CRIM1 SUMO2 PELI3 CNTN1 GBE1 TUBA4A DCTN1 DNM3 C11ORF96 GMFB OXR1 COX4I1 CLPTM1 PPIF TMEM230 RPS28 SCD5 MLF2 KIF21A NDUFA13 HOMER1 GSTT1 SNCG LINC00087 SCD SYT11 CLSTN1 S100A6 NDUFA5 NIPA1 C1ORF52 SCN1B NMNAT2 CAPZB IDH3A ADD2 KCTD12 GPX3 ATP5G3 UQCRFS1 WBP11 ATP6V1F PFKP TRIM37 NDFIP2 TKT ATP6AP2 SDCBP SERF2 CLEC2L FAM19A1 ARL6IP5 CAMK2N2 ATPAF1 BRK1 SUCLA2 NCDN ARF5 BSCL2 RNASEK-C17ORF49 MIF ATP6V1G2 RPL13A HNRNPA1P40 PLEKHD1 PCDHGA10 PCDHGA6 PCDHGA5\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "pyramidal neuron" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MT-CO1 CALM1 SYT1 CALM2 MT-CO3 MAP1B GAPDH TUBA1B MT-CO2 CHN1 SNAP25 MT-ND2 NRGN CCK FTH1 TMSB4X CLU VSNL1 MT-ND4 RTN4 NEFL CALM3 MT-CYB SEPW1 ARPP19 GPM6A SARAF RTN1 CKB EIF4A2 SPARCL1 NECAB1 MTRNR2L12 BEX1 ATP1B1 MT-ND1 ENC1 MTRNR2L1 VAMP2 RTN3 PRNP THY1 MT-ND3 DPYSL2 TUBB2A ARL6IP1 NGFRAP1 PPIA HSP90AA1 UCHL1 PREPL HSP90AB1 PEX5L PRKACB YWHAH DYNLL1 TSPAN7 NAPB OLFM1 CHL1 TOLLIP SNCG PPP3CA GPX4 KIF1A YWHAG MT-ATP6 PEBP1 ATP6V1B2 PHYHIP PNMA2 GAP43 YWHAZ CREG2 TOMM20 NELL2 ENO2 BASP1 SYT4 ATP1A1 APP PSD3 NDRG4 NDUFA13 ATP1A3 PGRMC1 MTPN SNCB CLSTN1 ACTG1 CPE TM2D3 RAB3A FTL UBE2V2 KLHDC3 SKP1 ATP6V0C RP11-20I23.1 ATP6V0E2 OXR1 ATP9A NCALD ATP6AP2 NUAK1 PDP1 MAP1LC3A RPL38 PPP2R1A OAZ1 GRIN1 MAPK1 MGST3 ENSA PRKAR1B SLC39A10 NAP1L2 ATP5B TMSB10 C14ORF132 OCIAD1 BEX4 EIF1AX SNX10 GPX3 SLC17A7 GABRA1 CNTN1 FAIM2 NDUFC2 TUBB4B SLC12A5 MLF2 HMP19 MTATP6P1 TAGLN3 SNCA TUBA1A RPL15 TMEM130 CDK5R1 GABARAPL2 HMGCR PTMA IDS TUBB3 PLD3 SYN1 ENO1 HAPLN4 CLTC RNF11 HINT1 ATP6V1F TMX4 D4S234E SERPINI1 MORF4L1 SNRPN KIF21A PRKCB STMN2 CEND1 TUBA4A PPP3CB KLC1 CFL1 GNAQ C14ORF2 EPDR1 RAB6B SLC30A3 PJA2 UQCRQ STXBP1 ITM2B DSTN PRKCE PIN1 HTR2A PRKAR1A NDUFS5 PFN2 LMO3 LMO4 BSG PIK3R1 SULT4A1 SERINC3 ATP6V1A COX7C TPD52 RAB7A ATP6V0D1 SCN3B BSN CYCS CERS6 REEP2 PKM GNB1 GUK1 SPOCK2 CLIP3 NAP1L3 ATP6V1E1 GRIN2A GDI1 UBC PACSIN1 RGS4 TPRG1L RPL13A MTRNR2L6 DIRAS2 YWHAB SUMO3 SPTBN1 ATP2A2 TPI1 SPOCK1 NEGR1 TUBB4A SCN2B VAPB IFI6 MBOAT7 ACTB TSC22D1 APLP1 SYT11 CAPZB PDE1C PLCB1 RPS28 LAMTOR5 AP2B1 GUCY1B3 DYNLRB1 ATP6V1C1 STMN3 RPL39 SERINC1 HS6ST3 SERF2 FAM127A GDA TCEB2 CAPNS1 TMEM160 SUMO1 DGUOK TMEM132D WASF1 ACLY TBCB MORF4L2 ATP2B2 MTRNR2L8 ITFG1 EXTL2 ARL8B RAB3C PTGDS PGAM1 PSAP FXYD6 NDUFB1 SUB1 PI4KA CAPZA2 FAM134A LMBRD2 SRP14 CABP1 ADSS ARF3 C6ORF1 ARF1 SOD1 COX8A GMFB NFE2L1 NDUFB4 DNAJC6 OXCT1 ATP5O SYNPR NPTN PPP2CA SERP2 BCAP31 KCNH5 NDFIP1 CDK14 PRKCG SLC6A17 NDUFA5 RPS15 MFSD6 ZBTB18 UQCRFS1 NEFM DMTN RNASEK-C17ORF49 AK5 CRYM UBA1 TSPYL1 BLOC1S1 SYNGR1 CTNND2 GHITM RPL3 SMAP2 THOC7 LPPR4 APOD VPS35 CHP1 CCT5 CTSD EIF1B RCAN2 RPS26 KCNK1 ARL8A KIFAP3 MSMO1 FAM163B NDUFB2 PTPRT PAK1 NPTX1 COX6A1 RHOB DCLK1 HEY1 SPCS2 SYT13 AZIN1 RPS2 LZTS1 PTPRN SCN1A SYNJ1 ATRN YWHAQ DHCR24 GABARAPL1 CX3CL1 NAA38 UBE2E3 FAM19A2 PSMC3 ATP5G1 SLC22A17 DNAJB6 UBE2QL1 ACOT7 ATXN10 PPP5D1 CCDC25 NPTXR C11ORF31 COPG1 C18ORF32 CYC1 OPN3 SLIT1 MRPS21 SLC25A6 PPP3R1 REEP5 RORB NME1 NDRG3 MANBAL PDE1A SYN2 CA11 ALDOA EIF1 NDUFA4 SPRYD3 STUB1 AURKAIP1 BSCL2 SV2B UQCRH TERF2IP SERPINE2 CDKN2D CAMK4 STMN1 NHP2 PCMT1 UROS HIGD1A RBX1 RRAGA TIMP2 GABRA5 EDF1 CADM2 NAPA NDUFB8 OPA1 SUCLA2 SCG2 RPL7 BEX2 PRDX5 DYNLT3 CRIP2 RABAC1 UQCR10 PPP1CB PET100 SMIM13 TMEM150C SRD5A1 IDH3A NDFIP2 PITHD1 CD99L2 UBL5 USP5 AP1S1 RPL35 WBSCR17 CAMKK2 CLTA AP2S1 USMG5 RHBDD2 ANXA7 MLLT11 JUND RAB11A MYL6B TESPA1 NCEH1 PPP2R4 CMAS SLC9A6 SCAMP5 C19ORF70 ISCA1 LINGO1 NDUFS6 RTN4R ATP5I NDUFB3 NDUFA8 RAB6A TRIM37 CBLN4 NRCAM PPP2R2B EDIL3 PVRL1 GADD45GIP1 SCOC APLP2 ARL6IP5 LDB2 MAP2K1 BRK1 FKBP8 CADPS2 TMEM59L CYFIP2 AES ALDOC MARCKS COX7B RPH3A MAPRE2 CTNNA2 ITM2C PRDX2 TPT1 HDLBP RLIM MAPK8IP2 UBB H2AFZ PCDH19 MRFAP1 DDN PNMAL2 RAP2A COX4I1 MAP7D2 BAD EPHB6 ELMO1 COL5A2 NDUFV1 ARHGDIA MDH1 RTBDN UBE2N ZNF365 PPP2R2C ISCU KIF3C FGF12 AP2M1 TOMM7 TENM3 MYL6 FIBP UQCR11 HCN1 CADM3 SNAP91 IGFBP5 NSF IPCEF1 RAB2A CMPK1 RPL13 BEX5 PIP4K2A C9ORF16 CHRDL1 RHEB RASL11B ID2 RXFP1 MPC2 ARHGDIG NCOA4 MTND2P28 TMEM230 NIPA1 CHGB SYT5 SDCBP CNTNAP5 SPDL1 ABHD8 NAT8L NDUFB7 SDF2L1 UHMK1 ATP5G2 ENOPH1 VSTM2A TMTC1 FSCN1 PHYHIPL FKBP1A MT-ND4L GPR68 RASGRF1 BEND5 EFR3A ACAT2 UBA52 REPS2 CAMK2D RSL24D1 IGFBP2 FJX1 VAMP1 BTNL9 TMEM151A ISG15 NBL1 PHPT1 VDAC2 RNF208 CST3 MAP1LC3B SYNPO CTBP1 CCDC184 KCNAB2 SLC7A1 TSPYL4 RPL26 GLO1 COX14 ETV1 RPL10A THSD7A COA3 LAMTOR2 ACTR10 PPP1R7 SGCD RPS3A PIP5K1B CITED2 SH3BGRL3 SCD5 PSMB5 DPP6 ATP5G3 CDH22 NDUFA12 NDUFAB1 SYNGR3 VGF RFK NUDT21 NOV TMEM158 ZFAND5 TRAPPC1 VDAC3 CPNE8 UBQLN2 GSKIP MRPS28 DPY30 MBP SCN1B SCN4B MT-ND5 IQSEC1 TPGS2 PFDN1 BRINP3 DNAJB9 GPR26 SERPINF1 SNX3 COX7A2L ESYT1 HOPX PPIF RRM2B SEZ6L2 NDUFB11 CDK17 PCYT2 BTBD1 ZMAT2 CNIH3 PCBP1 PTPRM TRPT1 HPRT1 LINC00087 RAPGEF5 HPCA CPLX1 SELT ERH CORO2B TRHDE AGA MT3 POLR2L RPS12 HBB LDHB KITLG ATP6AP1 NGRN LSM4 ASPDH ETS2 KCNA1 MRAS HK1 ANAPC11 B3GALT2 SELM KCNA2 ASAP1 PSMB7 GDE1 TMA7 PSMC1 LYSMD2 NEUROD6 DNAJA1 STK24 FAM131B PFN1 SEC61G KCNF1 DNAJC5 HN1 RPL23A MRPL52 STX1B IGFBP6 PFKP DYNC1I1 DIRAS3 FBXW11 TMEM141 PRDM8 DPY19L1 RASGRF2 ATP5F1 FBXO2 FXYD7 SPRN CTNNB1 HSPA8 ARPC4 NELL1 MTCH1 PRUNE2 AKAP12 LGI3 NDUFA2 GPCPD1 RPL18A CCDC115 EID1 NHP2L1 NXPH2 BAALC SLC25A22 PHB ACTR1A MAPRE3 HMGCS1 BNIP3 COX5A RPS27A GRPEL1 TPPP PARM1 RPS19BP1 JUNB VSTM2L YAF2 RAB11FIP5 MIF MAP2K2 EPB41L3 PGM2L1 NRSN2 MZT2B HNRNPH2 LIN7B HTRA1 PPA1 TOMM22 PMEPA1 PPDPF DYNLL2 DCTN1 NREP TMEM70 TMEM11 COL24A1 BAI2 RPS4X GDF10 CYB5R3 ANXA6 PCSK1N CAMK2G ARC MPP1 MAL2 MFN2 NSDHL TCEAL5 SIRPA EGR3 CSDE1 SNX17 GSTP1 GYG1 STMN4 RPS6 TMEM258 ATP6V0B FABP5 KIF5A CTU2 CCDC85B BANF1 DCTPP1 VWC2L LAMTOR1 LUZP2 COX5B CLIP2 PINK1 SLC24A2 SLC8A2 ABHD14A ETS1 COX6B1 TCEB1 EPHA6 CACNB1 ELAVL4 STK39 PELI3 S100A13 COX6C NRN1 TRMT112 MAP7D1 CCDC124 ARPC5L EIF5A2 MTX3 ATP2B4 POLR2I NCDN WSB2 SNRNP25 SUMO2 TEX2 DKK3 PCSK1 AP3S1 C1ORF56 UQCRB C1ORF115 LYNX1 DIRAS1 SOX4 TKT NRAS NCAM2 RAB5C RPL37A DNM3 UBE2M WBP2 FBXL16 MAP2K4 PSMD12 ARF5 MRPL51 SPARC ATP5C1 LINC00116 CBX6 FUNDC1 RPL41 COX7A2 OLA1 KRAS CYP1B1 BHLHE22 SPHKAP GPR6 ATP6V1G2 RPS10 GABARAP PSMB3 CFH PCDHA9 PCDHA10 PCDHAC1 PCDHA4 GTF2H2C_2\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "pyramidal neuron" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MT-CO1 MT-CO3 MT-CO2 MAP1B TUBA1B MT-ND4 CALM1 YWHAG ENC1 SYT1 CHN1 SNAP25 ATP2B2 WDR47 ATP1B1 NRGN MT-ND2 CALM2 OLFM1 ATP6V1C1 THY1 CALM3 RTN3 ATP1A1 SCAMP5 GPM6A PLCB1 MT-ND1 SNCB CCK CLSTN1 DCTN1 KLC1 COX4I1 FTH1 SNCA KCNAB2 PSD3 GAPDH PNMA2 CLU PJA2 ATP2A2 GRIN2A ATP1A3 CNR1 PEBP1 MFSD6 NAP1L2 RAB3C PSAP STXBP1 CD99L2 VSNL1 PRKCG BASP1 CKB NDUFB5 NPTXR ENO2 PIN1 HNRNPH2 TMSB10 SARAF PREPL MTRNR2L1 SLC9A6 MT-CYB NECAB1 SKP1 HMP19 CAMK4 RPS28 LMO4 TUBA4A OPA1 STMN2 TOLLIP SNRPN INA GRIN1 NGRN ITM2C EID1 PHYHIP CADM3 ATP9A TSPYL4 COX7C RPL12 NDRG4 ARHGAP35 AP2M1 SLC8A2 EGR3 TMEM132D CHMP4B PHYHIPL UQCR11 GUCY1B3 PAFAH1B2 PNMAL2 TSPAN7 PPP2R2C UQCRC1 VSTM2L CAMKK2 APP OPCML SUMO2 CDC42SE2 CYC1 PKM YWHAH MAPRE2 SPRYD3 PDP1 MIEN1 PEA15 ARL4C SPOCK2 CFL1 MAP1LC3A ATP6V0E2 PPIA NEFM KLC2 MET SYN2 GOLIM4 CHCHD2 GABARAPL2 CDK5R1 RAP1GDS1 PCSK1N PRKCB TM2D3 PRDM8 FXYD7 USMG5 PRNP UHMK1 ARL6IP1 NDUFB1 ARHGDIA ENSA SCN3B HOMER1 TPD52 C16ORF13 SYNPR EHD3 STMN4 EIF1 TRIM37 NGEF FBXL16 FTL UBE2V2 ATP5B SEPW1 PRKCE TPI1 GPX4 VDAC1 STMN1 DEXI MTX3 NDUFC2 NGB MPPED1 PFN2 MT-ATP6 SERINC1 PGAM1 OCIAD1 TOMM20 PPM1A CYFIP2 MAOB ATP5G1 RPS4X YWHAZ ARF3 SLC9A1 MT-ND5 FAM174A RPS3A TUSC2 HOPX SNAP91 NDUFA13 SPOCK1 TBCB SYT13 PGM2L1 COL5A2 HSPB1 GRM3 COX6A1 RPL15 CHL1 AES C14ORF2 MTPN SOD1 PCDH8 DYNLL1 RTN1 ARF5 UBE2D2 KCNC2 PRKAR1B GPCPD1 MYL12B CYB5R3 DUSP2 SUB1 SYNPO ATP6V0B EIF4G2 SCN2B UQCRB WASF1 BEX1 INPP5F MYL6B MTRNR2L12 SYNGR1 SIRPA PSMD2 AP3S1 RAD23B UBL5 PTPRN PRKAR1A CPLX1 SH3RF1 NGFRAP1 C1ORF233 RAP2A MAP1A FAM127A NDUFA1 NDN SLC39A10 PPP3CB ATP5E SH3GL2 TUBB2A JUND ETFB RGS4 NEFH NPTX1 NDFIP1 ROBO2 SERF2 CLTA RNF11 SUMO1 LDB2 NDUFB2 RPL36A C19ORF70 C14ORF132 GNB1 NCOA4 MORF4L1 TOMM34 GDI1 RAB6A GDA LINC01296 UCHL1 F8 BAG4 SERINC3 RPS6 CLTC ACTG1 NDUFB7 COX7A1 RAB6B FAT3 RTN4 CADM2 RHOB AZIN1 RFK CLSTN2 SLC25A6 GNAQ SCN1A ZBTB18 EPS15 UBE2QL1 MT-ND3 IDS NSF MTRNR2L6 TUBB3 ALDOA RPL41 TUBB PCDHGA10 PCDHGA6 PCDHGA5\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "pyramidal neuron" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MT-CO1 MT-CO2 MT-ND2 MT-CO3 MT-ND4 MT-ATP6 MT-CYB CALM1 MT-ND3 MTATP6P1 MAP1B PSD3 PRKCB ENC1 MT-ND1 FTH1 SNAP25 CALM2 SYT1 APP CLU GPM6A THY1 MAP1A BASP1 CFL1 SERPINI1 RTN3 CHN1 WASF1 RTN4 SCN3B RGS4 DPYSL2 PKM CKB MTRNR2L1 VSNL1 NEFL TUBA1A ZNF365 NUAK1 MAP7D1 ATP1B1 YWHAZ PRNP SEZ6L2 HMP19 CALM3 TUBA1B RPL41 MTRNR2L12 RPL11 ATP2A2 YWHAG CNTN1 ZBTB18 ATP2B2 SLC39A10 ATP9A SLC22A17 HSPA8 NPTXR YWHAB CAP2 DYNLL2 GDI1 SCD5 STMN2 SPON2 TPRG1L CA11 GNB1 ROBO2 CCK PRKAR1B PPP3CA CDK5R1 CAMK4 CADM2 RASGRF1 RPL15 RPS15 SPTBN1 NRCAM UBE2V2 NEGR1 TMSB10 ATP5G3 CPE GDA MTRNR2L6 PNMA2 TM2D3 CCDC85B MPC2 PPIA PGM2L1 TMA7 TMEM258 UQCR11 HEY1 PEX5L IDS SPARCL1 RPL32 GAPDH PPP2R1A ATP1A3 SYNJ1 TPD52 APOD EPS15 PSAP PEA15 GPX4 FXYD6 OAZ1 HSP90AA1 HSP90AB1 NCAM2 FKBP8 PPP3CB GAP43 TLN2 MT-ND5 ITM2B SV2B STMN1 PSMC1 CREG2 SYT13 CD59 RAB2A NCALD TCEAL7 TMEM59L NPTN CAMKK2 GABRA1 COX6C MTCH1 TGOLN2 OLFM2 SLC6A17 APLP1 NAP1L2 SLC1A2 TUBB4A C14ORF2 RPL31 RTN1 RAB6A GABARAPL2 DYNLL1 CTXN1 BSN SH3GL2 PPP2CA PRKCG ARF3 CLSTN1 RAB3C JUND AK5 SKP1 TSPYL4 OLFM1 UQCRH TUBB2A ARL6IP1 KIF1A PEG10 LMO4 RAB3A ATP5B ATP6V0E2 MAL2 TSPAN7 YJEFN3 PJA2 SNCG BRK1 GABRA5 PTMA NAPB CD99L2 CNR1 HINT1 SOD1 RPL37A CTNNB1 TMEM155 AP2S1 ALDOA SYT5 ENO2 RGS12 MTPN BTBD10 PTGES3 PTPRN MRPL51 MT-ND4L FSCN1 NMNAT2 LINGO1 KIF3C PHB SLC12A5 MTUS1 PSMD12 C19ORF70 CDK17 LPPR4 SNRPN INA HCN1 OXR1 NWD2 PARM1 SLC8A2 PI4KA MYL6B MAPK8IP2 MPPED1 LAGE3 NDUFA12 BSG RPS5 DYNLRB1 PPP3R1 RAB6B SCG2 DCLK1 FBXL16 ATP5J2 CLTC CYCS NDRG4 MRAS UBC PSMC3 GLRA3 SIRPA EIF1B TMEM130 MT3 EFR3A DSTN ASPDH DUSP2 AP2M1 TUBB3 PIK3R1 OCIAD1 GRINA TBR1 RAB1A SNCA SCAND1 ETS2 ADSS PPP2R2B EIF1 NDFIP1 MAPK1 NGFRAP1 COX7A2 MARCKS CNTNAP5 PPDPF RPL12 DYNLT3 KCNV1 CHL1 RPS3A NREP TBC1D15 B3GNT1 GPR26 ARL6IP5 GDE1 SGK223 GSKIP KLHDC3 ARFGAP2 RRAGA CARTPT ATP6V0B VAMP2 TOLLIP PTK2B MAPRE2 SLC25A6 PHYHIPL FKBP4 HMGCS1 KLC2 RP11-345J4.4 STXBP1 CST3 WBP2 RHBDD2 CRYM ARL8A REEP5 WSB2 ATP6AP1 ADCYAP1 DIRAS1 TMOD2 PPP1CB CAMK2N2 PEBP1 UBE2N TOMM70A KCNAB2 SYNGR3 NAP1L3 PEF1 SULT4A1 SRP9 MDH1 TUBA4A CDC37 DNAJB6 NRGN FGF12 TIMP2 SNX10 TMSB4X RPL13A ITFG1 MAOB C18ORF32 COPG1 LDHB SLC25A5 DACH1 RAB7A DCLK3 MAP2K1 KLHL5 TM4SF1 NFIA SPRN PCBP1 PTGER3 ASAP1 EIF4G2 WIF1 KLC1 DNAJC6 RPL13 MAGED1 PRKAR1A ATP1A1 UCHL1 YWHAH SPCS2 PDCD5 STMN3 LIMK1 WASL UBE2E3 CDK14 RAP2A BEX2 DMTN UHMK1 GRM3 TSPYL1 C1QL2 GSK3A WFS1 RASGRP1 AHNAK2 TMEM160 OPA1 DNAJC21 SERINC1 FXYD7 SEPW1 NDUFB8 NDUFA11 VDAC2 GRIN1 FKBP1A GABARAP GHITM ID2 AES GMFB MGST3 ANO3 SRP14 BSCL2 FBXW11 SEZ6L PFN2 COA3 RHEB FAM96B PPP2CB TPI1 CTBP1 NRSN2 FTL ARHGDIG RPH3A CPNE8 TSC22D1 ISCU RAB11FIP5 GOT1 NELL2 DDN PINK1 ACTB GNG3 ATP6AP2 HOPX NDUFB10 POLR2I BANF1 VDAC3 PSMA7 ATP6V1E1 KCNA2 TOMM7 NUDT4 COX6A1 ARL8B UBB PTPRS COX8A GTF3A UQCRB SLC17A7 GLO1 GUCY1B3 KIFAP3 C1ORF115 TCEAL2 PRKACB COX5A LMBR1 PHYHIP GPX3 NRAS MLLT11 ATP6V1G1 SNX3 TUBB4B ZFAND5 RPL17 NSF RNASEK-C17ORF49 ATP6V0C RPL17-C18ORF32 C20ORF24 MBOAT7 NGRN RP11-20I23.1 RPL39 TUBB RPL7 PCDHGA6 PCDHGA5 PCDHGA10\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "pyramidal neuron" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MT-CO1 MT-CO2 MT-CO3 MT-ND3 MT-ND4 CALM1 SYT1 RTN1 CHN1 CALM2 MAP1B CLSTN1 PPP3CA PRNP KLC1 TMSB4X NRGN HSP90AA1 MTRNR2L1 MT-ND2 MT-ND1 MT-ATP6 RGS4 ACTB CAMK2D RTN4 MT-CYB NPTXR THY1 PLD3 RNF11 NAPB C1D CCDC85B GPM6A MAP4 ATP5I LGI3 LMO4 SLC6A17 MT-ND5 DPYSL2 NEGR1 TRHDE NDUFB7 SPOCK1 COL5A2 GNG3 ENC1 NDRG4 ATP9A TRAPPC1 SELT SNAP25 RPL31 PSAP SGK223 ATP6V1B2 MTCH1 ATP1B1 CDH8 CBX6 SEPW1 RPH3A ELAVL2 CSDE1 CNTN1 NDUFA4 SYN2 VPS35 STMN2 KCNH5 EIF4A2 COX6C MRPS21 MTRNR2L12 ELAVL4 SERPINI1 CDK14 GOT1 CALM3 TSC22D1 GAP43 PSMA7 ARPP19 MTPN RTN3 NAPA CAPNS1 FAM131B NDUFA13 WDR47 USMG5 STXBP1 MAP2K1 UQCRH TUBB4B ATP1A3 TAGLN3 OLFM1 HMP19 SPOCK2 C6ORF1 GNAQ NDUFB1 ATP1A1 WBSCR17 CA10 MT-ND4L EDF1 ATP6V1F SMIM13 ZBTB18 C7ORF50 REPS2 CCT5 STMN4 CHL1 MORF4L2 ATP2B2 CCK MAPK8IP2 AP2B1 OXR1 WSB2 SARAF EPHB1 KLHDC3 MYL6B NDUFS5 CADM2 MGST3 EPB41L3 PRKACB TSPYL1 PNMAL1 UBE2D2 CARTPT ARF3 UCHL1 IDS YJEFN3 RANBP1 FBXL16 RPS15 COX6A1 NPTN MORF4L1 CAMKK2 UQCRC1 MYO1B NDFIP1 ITM2C RABAC1 YWHAQ CHMP5 CYC1 TMEM59L PDP1 BSG GUK1 SNCB RAB2A RAB7A KLK5 CPLX2 CLIP2 NDUFA1 MYEOV2 CDK5R2 OLFM2 C1ORF52 REEP5 HSPA8 SYNGR3 MAP2K4 NWD2 NARS PCMT1 DYNLL2 MTRNR2L8 PEX5L SNX3 RORB RP11-20I23.1 UBE2QL1 CPLX1 SLC12A5 FIBP TSPYL5 MPPED1 EXTL2 SNAP91 GABRA5 MRPL15 PTMA CDC42SE2 NEFL SNCA TMEM130 TMEM258 CHP1 C1QBP VSNL1 EPS15 PPP1CB PREPL PRPS1 OAT MAP1A RPL12 GRIN2A FAM96B RPL39 RAB3C MAP7D2 SNCG BNIP3 SYT5 PFDN1 CDK5R1 NDUFB3 NDFIP2 LYNX1 RPL13A NUAK1 ANO3 NAP1L2 TMX4 PGRMC1 TPPP BEX2 C4ORF3 COX6B1 STMN3 CTNNA2 ATP6V0C GDI1 GDA MTATP6P1 LPPR4 NAP1L3 ATP2A2 MAPK1 SCAMP5 RAB1A TUBA4A ATP6V1A SH3GL2 COX8A CYP1B1 RPL37A BASP1 TMSB10 UQCRQ BCAP31 HMGCR FXYD6 TSPAN7 GRINA TUBA1B CAMK2G DKK3 SMS HSPBP1 NEUROD6 CREG2 DCTN1 DNAJC6 FAM84A CABP1 RPS4X GADD45GIP1 PIK3R1 TPT1 TUBA1A GNB1 SYNJ1 CDK17 SLC22A17 RRAGA ARL6IP5 REEP2 PSD3 NGRN ALDOA C18ORF32 RPL17-C18ORF32 FTH1 PCDHGA6 PCDHGA10 PCDHGA5\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "pyramidal neuron" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MT-CO2 MT-CO3 MT-CO1 MTRNR2L1 MT-ATP6 CHN1 MT-ND4 MTRNR2L12 MT-ND3 FTH1 MTRNR2L8 ATP1B1 MTRNR2L6 MT-CYB GPM6A SNAP25 MAP1B ENC1 NAPB SPARCL1 ATP6V0B PPP3CA NAT8L ACTG1 NECAB1 NRGN CALM2 DPYSL2 YWHAZ VSNL1 TUBA1B SLC17A7 MT-ND2 CDC42SE2 SULT4A1 PTMA VAMP2 RCAN2 PJA2 MAPK1 SDCBP NRCAM TOMM20 YWHAG ID2 CLTC PRKACB ATP5C1 SUB1 SYT1 CA11 RAB3A ATP1A1 PRDX3 RTN4 APLP2 FAM3C VAMP1 CSDE1 PHYHIP SYN2 SEZ6L2 SERINC1 DNAJC5 FXYD6 SNCA NAP1L3 ARL6IP1 IDS PIN1 CRIM1 SCAMP5 CLIP2 TAGLN3 COX14 CTBP1 TBCB ATP6V0E2 TMSB10 NDFIP1 RASGRP1 PRUNE2 GAP43 GPR158 SCD5 BSG RPL12 FIS1 SARAF CMAS HSP90AA1 TOMM22 SNRPN INPP5F PPIA SYT2 TSPYL4 SPOCK3 WSB2 TUBB2A ZFAND5 CADM2 SCN3B EPB41L3 DNAJB6 PLCXD2 SV2B MANBAL COL5A2 C6ORF1 TMEM70 ATP1A3 SSBP3 TMEM130 VIP MAP2K1 MRPL20 SERPINI1 ATP6V1G1 LMO4 CADM3 CDH22 OPA1 MAPRE2 PSMC3 ZNF365 CLSTN1 COPS8 HEY1 AK5 NDUFA1 ATP2B2 SYNPR MT-ND5 CDK5R1 CTXN1 BRK1 MTATP6P1 GAPDH GOT2 IGFBP2 FKBP1A HMGCS1 RBX1 ELMO1 THY1 WASF1 RIT2 EFR3A RAB3C ZBTB18 CKB ASAP1 STMN2 NBL1 RAP2A HCN2 FABP5 PIK3R1 CPE HSP90AB1 ATP6V1A RHEB SLC12A5 PCDH8 MAP1A CLGN CYFIP2 TMEM158 GMFB RTN1 GHITM SSTR1 CREG2 GNG3 MT-ND1 SLC22A17 KIAA1045 MAGED1 SPOCK1 ATP6AP1 TSPAN7 ATP2A2 CCK KLHDC3 EDF1 FNDC4 RNF11 PDZD11 ARHGAP35 PPP2R2C NAP1L2 PCBP1 NCDN PRKAR1B KCNA1 YWHAB OXR1 ARF3 DCLK1 TSPYL1 RPL23A SERP2 PRNP NPTN ATP6V1F NUTF2 NGFRAP1 JUNB RGS4 NCEH1 TPGS2 KLC1 HINT1 CHMP4B MTPN AES ATP6V1B2 RAP1GDS1 NDUFB5 ARFGAP2 PAM PRKAR1A DKK3 RTN3 SNX10 SYT11 POU3F1 TMOD2 NSF ARF5 RPS26 TUBB\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "pyramidal neuron" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MAP1B SYT1 RTN1 CLU YWHAG THY1 TUBB2A KLC1 ATP1B1 NRGN CALM1 MT-CO3 RTN4 MT-CO1 SLC17A7 RTN3 UCHL1 BEX1 PEX5L ATP6AP2 PJA2 PKM VSNL1 ATP1A3 CLSTN1 GPM6A SNAP25 SERINC1 GRIN1 NEFL TMSB4X PRNP MTRNR2L1 GAPDH ENO2 CHN1 CADM3 ENC1 CALM2 SPARCL1 YWHAQ CLTC APP PTPRN STMN2 PSAP TSPAN7 AP2M1 FXYD6 ATP2B2 HSP90AA1 CHGB DPYSL2 ATP2A2 OAZ1 SPCS2 GNB1 RAMP1 EGR3 NEFM OAT SLC8A2 RPH3A RPL35 TMEM59L TOMM20 PTMA MAL2 NPTX1 NRCAM PPP2CA MDH1 CDK5R1 GRIN2A NAP1L2 TBR1 PEBP1 MT-ND3 SARAF ACTB ALDOC DMTN ATP6V1B2 HMP19 TSC22D1 AP2S1 NDFIP1 VDAC1 CCK GDI1 LMO4 SERPINE2 MAPK1 PTPRS SPOCK1 BAALC SNCA ENO1 DDAH1 TRIM36 AES NAPA PCSK1 RPL32 ARF1 ATP6AP1 NAT8L APLP1 YWHAZ SDCBP PNMA1 PRKCB NCDN MT-ATP6 ELAVL4 MFN2 CCDC85B NECAB1 LPPR4 S100A6 NUAK1 ATP6V0B PPIA CDH13 HAPLN4 NSF BSCL2 CIAPIN1 UQCRH ATP6V0E2 MYL12B SYT17 SYT5 COX7C ATP6V1A NDUFB7 SV2B HOMER1 CKB SELT PAK1 NDUFB4 EID1 RNF11 OCIAD1 HPCA CD99L2 PDE1A PGK1 DNAJB6 CREG2 HINT1 KLHL12 SLC25A22 SNCB RPL8 BSG SCN3B CDC37 HTR2A HOPX TRIM37 PRKACB MAP2K2 ATP6V1E1 KIF1A VPS35 OPA1 PHYHIP ATP9A BSN HS6ST3 MRFAP1 GPX4 CYC1 NDUFA5 NDRG4 DNAJA1 FAM134A APBB1 INPP5F TSPYL4 MAST3 GAP43 MT-ND2 GABARAPL2 SYN1 NCOA4 RPL26 ATP5G3 RAB1A CNTN1 SCAMP5 GUCY1A3 IDH3A ATP5F1 HN1 GDA PLCB1 PNMA2 PSMA7 REEP2 AP3S1 COL11A1 RAB27B RABAC1 PSD3 BANF1 SRP9 C11ORF31 ATP5B PITPNA COPS7A BASP1 TAGLN3 CABP1 TPI1 PPP1R9B TMEM155 TSPYL5 EIF1AX ASNA1 PAQR9 MTPN ANXA6 CYB5R3 FBXW11 COX4I1 FSCN1 PACSIN1 MT-ND4 CMAS LANCL1 NPTXR SCOC SELM NGRN TMOD2 SYNGR1 YAF2 TMSB10 CLIP2 CADM2 NGFRAP1 OPN3 MORF4L1 ZBTB18 SERINC3 OXR1 OLFM1 NUPR1L SMIM12 KCNAB2 GHITM WDR47 TOLLIP PFN2 RRM2B NTNG1 PTGES3 ATPAF1 ATP6V0D1 NIPA1 RGS4 PAM ADD2 TPD52 BAI2 DYNLL1 RPL13 MAPK8IP2 MFGE8 TMA7 SLC25A6 SERPINF1 DCLK1 C12ORF49 LINGO1 ZFAND5 RAB3C CALM3 RPL21 C14ORF132 FTH1 OLA1 INA NFE2L1 IGSF21 MAP1LC3A KCNF1 LGI3 SULT4A1 SCG2 OXCT1 C1ORF115 GSK3A BCAP31 PPP1CB TUBA1B TUBA1A EHD3 MTATP6P1 PSMD12 BEX5 YWHAH RPL39 TSPYL1 NHP2L1 NDUFC1 ATP5A1 MPC2 TOMM70A PVRL1 CYFIP2 SNRPN EFHD2 CDK14 PFKP ACTG1 CPE WSB2 ACOT7 SIRPA FAIM2 PCMT1 STMN1 NAP1L3 MYEOV2 SYT4 C4ORF3 SLC9A6 GADD45GIP1 RPS3A GNAQ CCDC25 MT-ND1 RPL7 SH3BGRL3 BDNF GOT1 HSPA8 WBSCR17 TUBB4A HMGCS1 UBB SLC22A17 MRAS APOLD1 IDS MTRNR2L6 MBOAT7 PET100 CORT ALDOA TUBB PCDHA4 PCDHAC1 PCDHA10 PCDHA9\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "pyramidal neuron" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: RTN3 MT-CO1 MT-CO2 CHN1 CALM3 RTN4 SYT1 TUBA1B MAP1B MT-ND3 SNAP25 CALM1 BEX4 YWHAG SPARCL1 STMN1 MTRNR2L12 CALM2 VSNL1 PRKCB TUBB2A PREPL GPM6A CLSTN1 PRNP VSTM2L EIF4A2 TMSB10 FAIM2 PPP3CA PCP4 PGM2L1 COX7C THY1 RP11-195F19.5 MT-CYB LYNX1 ARL6IP1 ATP1B1 RPL41 NEFL HSP90AA1 RTN1 GRINA PDE1A NAPB SLC24A2 PPP3CB ENC1 TKT MT-CO3 OPCML VPS35 MT-ND4 SLC17A7 LPPR4 ATP1A3 STMN2 MFSD6 RRM2B DPYSL2 NCALD CLTC NMNAT2 TRIM35 STX1A MTRNR2L8 HSP90AB1 GUK1 NUAK1 PET100 PSMA7 NAPA APLP1 SYT11 RTN4R PRKAR1A CAMK2D MTRNR2L1 MTCH1 FXYD6 CABP1 NDUFB1 LMO4 SERPINI1 TMEM59L GABARAPL1 PLCXD2 SV2B PRKAR1B SYN1 RPL21 MLLT11 C16ORF13 GOT1 PEBP1 SYN2 NRCAM NELL1 NPTX1 CPLX2 FBXW11 RPS28 IPCEF1 ETV1 COX14 DYNLL1 SLC30A3 OLFM1 MAP2K1 ZMAT2 ATP1A1 MAP2K2 MT-ND5 PLD3 ATP6V0E2 LMBR1 EIF1B INPP5F NDUFA2 GLIPR1 RORB SNCA RPL35 ATP6V0C RP11-20I23.1 RAB3A LMO3 SLC6A17 C4ORF3 BEX1 CHGB PPP2CA MAP4 SEZ6L2 WBSCR17 CHMP4B SERF2 C14ORF132 TUBA4A LL0XNC01-16G2.1 PTMA PFN2 UQCRQ NRN1 NDUFA1 KLHL5 NDFIP1 C7ORF50 MPC2 KCNK1 PPP2R1A PHYHIP SLC22A17 PPP1CB KCNAB2 TPPP CTNNB1 DPY30 BANF1 RAN CCDC25 BSN VDAC1 ARL6IP5 CAMKK2 ATP5B TMEM151A TRMT112 ACTG1 ATP6V1B2 HMGCS1 SLC39A10 NDUFB2 PRKACB GABRA1 CMAS IDS SPRYD3 SPCS2 MLF2 UQCR10 HPRT1 COX5B NEFM C19ORF70 OAT COX7A2 NELL2 ATP6AP2 ARPC4 FTH1 TMSB4X SEPW1 DHCR24 LDOC1 CAMK2G SCAMP5 CLTA SEZ6L COX7A1 ATP6V1C1 TMTC4 CDK17 CCK ARF3 BCAP31 PEG10 SIRPA NPTN FAM134A LMBRD2 SCD5 BSCL2 KIF5A PGRMC1 ACTR10 CD99L2 SYT4 TMEM65 SULT4A1 TOX PVRL1 BTBD10 ITM2C MTPN PJA2 GNB1 CBX6 CLIP2 GAPDH SOD1 GPX4 UBB COPS7A TMEM132D TAGLN3 BAI2 TM2D3 DCLK1 OAZ1 AES RPL23A ENO2 ARF1 MT-ND2 HS6ST2 CDK5R1 UBE2D2 RPL26L1 HMGCR ATP5G2 B3GNT1 WBP2 ATP6V1A POMP HDLBP UQCRC2 PPP3R1 MRAS UQCR11 KCNA2 NREP SKP1 VAMP2 PDP1 SPTBN1 RAPGEF5 RLIM STX1B TUBB3 PACSIN1 SMYD2 SLITRK1 SMIM13 COPRS ATXN10 NEFH DKK3 NECAB1 KCNA1 SERINC1 B3GALT2 CKB CLU QDPR NDN PEF1 PTPRS GPR158 SLC9A6 CADM2 NRGN PLCB1 KCNC2 MGST3 MRFAP1 HMP19 ATP5F1 ATP9A NARS ARPP19 ADORA1 ATP6V0B CRIM1 BRK1 REEP2 ATP2B2 TMX4 SARAF AK5 SRP14 NAA38 TPRG1L ASAP1 MAGEH1 SRP9 PRDX5 SUMO1 PSMD12 LINC00086 RAB5C CCDC124 PCYT2 PTPRN ELAVL2 MPPED1 ANXA6 CLTB PSMC3 PPIA KLHDC3 C1ORF52 DNAJC6 CX3CL1 DIRAS2 MORF4L1 DNAJC5 CPE PSAP OCIAD1 FAM163B CHRM2 FAM174A EGR3 WASF1 NDUFB7 YWHAH POLR2L NIPA1 PFKP RHEB NGEF ALDOA NGRN PSMB3 YJEFN3 MT-ND1 MTRNR2L6 MTND1P23 PCDHAC1 PCDHA9 PCDHA4 PCDHA10\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "pyramidal neuron" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: SNAP25 MT-CO1 MT-ND4 MT-CO2 SYT1 MT-CYB CLU MT-CO3 CALM2 GAPDH NRGN GPM6A MAP1B RTN4 ATP1B1 RTN1 NDUFA4 HSP90AA1 TSPAN7 DPYSL2 CCK ENC1 PHYHIP MT-ND2 TSPYL1 FTH1 ATP6AP1 NECAB1 RTN3 TUBA1A BRK1 SYNGR1 DIRAS2 VSNL1 TMSB10 ATP5B MT-ND3 PPP3CA CHN1 SKP1 CALM3 UBC C14ORF2 ACTB ATP1A1 NPTX1 LMO4 RAB3A HK1 SLC38A1 SLC17A7 EIF1AX DYNLL2 COX6B1 PRNP SNX10 MT-ATP6 DCTN1 NDUFA11 ATP2B2 PIK3R1 CDK14 PEBP1 VAMP1 EGR3 MTATP6P1 TMEM130 TMSB4X ISCU TUBA1B THY1 HSP90AB1 PSAP SSBP3 APP PNMAL1 MT-ND4L MAPK1 NGFRAP1 CPE FKBP1A OLFM1 STMN1 SNCB ATP6V1A CADM3 CALM1 KIF1A PGAM1 ATP2A2 IDS ENO2 CYSTM1 HS6ST3 CCDC85B MAP4 C1ORF95 UQCRH IPCEF1 VAMP2 FAM174A MFSD6 CEND1 ARHGAP29 CABP1 GDI1 SPTBN1 COPRS RAB2A SARAF PNMA2 RCAN2 NSF UBE2M CREG2 FAT3 NCAM2 YWHAG STX1A MRFAP1 C12ORF49 BEX4 ACOT7 ARF3 CTXN1 DPP6 STRAP YWHAB CRKL CHMP4B PGD BEX1 C1ORF115 WDR47 CARTPT ATP6V1E1 SERINC3 ELAVL4 NMNAT2 ATP2B4 DYNC1I1 SCD5 NARS SLC25A6 KIF5A TAGLN3 TEX2 GABARAPL2 SCN1A CA10 RPL36A CD99L2 SAMM50 KLC1 CTNNB1 CLTA FAIM2 RHOA SLC24A2 ATP6V1C1 EIF1B DNAJC6 FUNDC1 KCNA2 SOD1 HCN1 TPD52 TPPP MORF4L2 ATP6V0B MTRNR2L1 RAB40B NTHL1 FABP3 NGEF ARL4C CDK5R1 PREPL TMEM150C MAST3 ACTR6 WSB2 SERPINI1 FTL RPS10 LDOC1 SH3GL2 ARL6IP5 SEC61G UBB CRYM CHP1 STK24 PDP1 ACTG1 GAP43 PRKACB CBX6 ALDOA RGS4 LMO3 NDFIP1 RAB3C SLC25A4 MFGE8 NPTN RPL15 ITM2C ARL6IP1 PI4KA CHL1 SMIM12 FBXW11 P2RX6P SERP2 C2ORF80 CAMKK2 ARHGDIG CX3CL1 NCEH1 SLC9A1 DHCR24 ZNF365 SLC12A5 HMGCS1 STMN2 PRKAR1B BEX2 TOMM20 H2AFZ ATP9A PRKCB SPOCK1 NAP1L3 PSD3 AK5 PRDX2 MAPK8IP2 SNX17 UBA52 SCAND1 BSN NAPA ATP5A1 SPARCL1 MYEOV2 PEA15 LYSMD2 MDH1 VDAC1 RPS27A PCBP1 SEZ6L GNB1 DRAP1 CYP1B1 RAB5C POLR2I GMFB GABARAPL1 ATP6V0E2 SYN1 TSC22D1 CAPNS1 GLO1 COPS8 ANXA6 PKM SYT13 ATP6V1G1 S100A6 PLD3 NEUROD6 CAMK2N2 DLD PJA2 NHP2L1 COX6C CKB ATP5I JUN PRDM16 FAM134A CDH8 PHYHIPL ANO3 ABHD8 NOV NDRG4 SV2B FXYD7 SYT11 LANCL1 BNIP3 GUCY1B3 GSK3A YWHAH RAB6B GRIN1 RP11-20I23.1 NUDT21 MTRNR2L6 TUBB3 C11ORF31 ATP6V0C ATP6V1G2 PCDHAC1 PCDHA4 PCDHA10 PCDHA9\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "pyramidal neuron" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MT-CO3 MT-CO2 MT-CO1 CHN1 MAP1B SNAP25 CALM2 CALM1 MT-ATP6 ARPP19 CLU ACTB TSPAN7 EIF4A2 RTN3 ENC1 MT-ND2 NPTX1 MTRNR2L12 VSNL1 PHYHIP SYT1 PRKCB TUBA1B PREPL SPARCL1 NGEF APP PSAP RTN1 SPOCK1 NRCAM SH3GL2 C14ORF2 YWHAH LMO4 SLC17A7 TMSB10 TMSB4X FTH1 DIRAS2 SERINC1 MT-ND4 NEFL MTATP6P1 RTN4 CDK5R1 MT-ND3 PDP1 TMEM59L RAPGEF5 MTRNR2L1 CERS6 ATP6AP1 NGFRAP1 PMEPA1 PJA2 LYNX1 PPP2R2C PRKAR1B PI4KA CTSD SYT5 NCDN MAPRE2 PSD3 KIF5A SMIM13 NRGN NECAB1 CCK ARF3 MAP2K1 FAIM2 PCDH17 ATP9A VAMP2 SLC9A6 IDS GDI1 ITM2B ATP1B1 PEA15 TAGLN3 MTRNR2L8 CLSTN2 SLC24A2 ARF1 CEND1 SERP2 TMA7 FXYD6 NUDT4 APLP1 YWHAG OLFM1 CFL1 MT-CYB CKB DNM3 TPPP UBQLN2 PHYHIPL LMO3 STMN1 ATP2B2 DIRAS1 NDUFB2 MT-ND1 APLP2 SUMO3 ATP6AP2 PKM BASP1 BHLHE40 GPM6A APBB1 GAP43 SLC8A2 PNMA2 MPPED1 CALM3 KLC1 HK1 AK5 THY1 DKK3 CBX6 MTRNR2L6 NSF APEH KIAA1045 REPS2 CPLX1 SNRPN EIF1B OXR1 PFN2 BSN C4ORF3 RPS4X PPP3CA VAT1L CAP2 KCNC3 COX7A2L PEG10 NPTX2 CHP1 GPCPD1 NDUFAB1 ITM2C VDAC2 IGFBP6 PLD3 SERINC3 ATRN ELMO1 COX4I1 MTPN CHCHD2 PGAM1 CAMK2D SNRNP25 PPIA ATP1A3 HPRT1 TMSB4XP4 NEFM LDOC1L ENSA ATP5A1 DPYSL2 ZFAND5 GUK1 DNAJC5 NDRG4 KLF10 SKP1 PTPRN SUMO2 YWHAZ RHBDD2 SLC22A17 SSBP3 DMTN SCN4B TMOD2 PITPNA TESPA1 DNAJC4 AHNAK2 MLF2 SYTL2 DNAJB9 SSTR2 TCEAL5 ID2 NCAM2 OPA1 AP1S1 FBXL16 UBE2QL1 TCEB1 PRKCG NAP1L5 CCT5 PAK1 RAB3C DCLK1 STXBP1 RPS10 ATP5J2 MCHR2 ARL8A STX1A SYT4 PPM1A EPS15 PTPRS RHEB CRYAB CREG2 KIF1A SYN2 TOMM20 TMEM14A FAM3C SCN2B FKBP1A SUMO1 PIN1 SCD5 CDKN2D RAB4A RAB3A KCNK1 CPE ATP5G1 NHP2 NEGR1 LMBR1 BEX1 NDFIP2 EIF1 MTCH1 FSCN1 CAMK2G MDH1 HMGCR USMG5 TPT1 PRNP NBL1 SUB1 JUND ATP2A2 FAM127A ELAVL2 TXN C9ORF16 SRP14 KRAS CHMP4B TRMT112 SCAMP5 NRIP3 WDR47 TSPYL4 RPS15 HOPX RGS4 STMN2 SAP18 UBE2N NAT8L ATP2B4 CLIP2 ANXA6 NIPA1 GOT1 OPCML DPY30 TCEAL2 CD99L2 OPN3 STX1B BTBD10 UQCR10 CLTA DPP6 CDK14 NAP1L3 WBP2 GRINA ENO2 SYNPO SYT11 EPDR1 TCEAL7 NPTN IGFBP5 AQP4 RLIM SYNJ1 HSP90AB1 MFN2 YAF2 MLLT11 MORF4L2 SHARPIN RAB5C ACTR10 NAPB PPP1CB ARL1 EPB41L3 SNN CA11 NMNAT2 CLIP3 NDUFB10 TEX2 NELL2 EGR1 NDUFA2 GTF3A LGI3 ATP5B CCDC169 CADM2 ESYT1 SEPW1 CLSTN1 RAB6A PRKAR1A WASF1 EFR3A HSP90AA1 OAT SYT13 SPTBN1 GAPDH DYNLL2 CDS1 CAPNS1 MMP24-AS1 TMEM70 TMEM155 RAB6B SLC39A10 APOLD1 ALDOA RNASEK-C17ORF49 PSMB3 ATP6V1G2 TUBB\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "pyramidal neuron" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MT-CO1 MT-CO2 MT-CO3 SYT1 CALM2 SNAP25 MTRNR2L1 GDI1 NRGN CHN1 ATP1B1 MAP1B ARPP19 PRNP VSNL1 SARAF MT-ATP6 CALM3 MT-ND4 NEFM CKB MT-CYB RTN3 MT-ND1 PKM TMSB4X SLC17A7 HSP90AB1 MAP2K4 GPM6A YWHAZ PRKACB RAB6B NDFIP1 GAPDH STXBP1 ACTG1 OXR1 TMSB10 FTH1 YWHAG CLTC ACTB MTRNR2L6 FGF12 PJA2 PPP3CA ENO2 THY1 ATP2A2 MT-ND2 PSAP MAPRE3 KIF1A NEFL APLP1 LMO4 GHITM NAPB PRKAR1B EGR3 CALM1 DCLK1 PREPL ENC1 TCEB2 CLU SPOCK2 YWHAB YWHAH SERINC1 SNRPN ZBTB18 TUBA1B DKK3 MTRNR2L12 MAP4 NELL2 TUBB4A TUBB4B RCAN2 PEX5L RTN4 ATP6V1A SPTBN1 RTN1 CCK PPP2R1A CFL2 PI4KA PNMA2 PRKCB RPL26 AP2M1 VPS35 PINK1 CYFIP2 SH3GL2 ATP2B2 LYNX1 RPL13A ATP6V0C IPCEF1 CRYM CDK5R1 ISCU TOMM70A PFDN1 TUBA4A ALDOC PPP3CB AP1S1 CAPZA2 NGFRAP1 RP11-20I23.1 MTATP6P1 TAGLN3 EPS15 COX17 NME1 NCEH1 SSBP3 TUBB2A FBXL16 MTCH1 DPYSL2 MAPK1 DIRAS2 COX5B RPL41 PTGES3 GNG3 DYNLRB1 NELL1 SLC9A6 PPIA CEND1 CMAS APLP2 EGFL7 BNIP3 C14ORF2 SLC22A17 WASF1 TMEM59L ATP1A3 PPP2CA SPOCK1 ITM2C TMEM35 KCNAB2 GADD45B TOLLIP MAST3 CHL1 PSD3 SKP1 RAB3A OCIAD1 NFE2L1 SLC25A5 MFSD6 PGRMC1 SLC12A5 CDH8 APP ELAVL2 CREG2 PNKD SELM NDUFA12 RPL11 EIF4A2 GMFB SELT RAB6A PDP1 MAPRE2 RAB3C TSPAN7 AK5 WSB2 GUK1 HCN2 UQCRH ITM2B PET100 SLC39A3 PGAM1 UBC NDRG4 ATP6V1G2 NSF ATP5O RASGRF2 MCHR2 BEX1 REEP5 SYT5 VDAC3 AES CDK17 USMG5 ACTR1A ELAVL4 FOSB PACSIN1 STMN2 KIF3C TPT1 ELMO1 FAM127A HAPLN4 FXYD6 SNCA PLCB1 ARL6IP5 SNX10 ENO1 SIRPA STX1B PHB RHBDD2 NDUFS5 STMN1 CADM3 GPR158 NDUFA11 MRAS TMEM130 UROS TM2D3 DSTN ACP1 DDN CHP1 SMIM13 RPL31 BRK1 KIF5A CHMP4B SYT11 UBE2V2 SNCG AP3S1 ATP5G2 KLC2 GRINA SAP18 CAMKK2 WBP2 SRP14 PEA15 D4S234E GSKIP KCNK1 CACNG3 PRUNE2 GABRA1 SYT4 UCHL1 NEGR1 UBE2E3 RRAGA PRKCE B3GNT1 COX8A TUSC2 KRAS WNT5A HCN1 CORO2B GDA AURKAIP1 CDC42SE2 PGM2L1 MAP1A SCAMP5 MAP1LC3B CERS6 PFKP CLTA COX7C NDUFB5 ATP6V1B2 ACOT7 CLIP2 SCN1B SCN3B NDUFB8 MAP2K1 ARHGAP35 CTXN1 KCNA1 GOT1 IQSEC1 MORF4L1 ABHD8 MRFAP1 TUBB3 ATP5J2 C7ORF50 CNRIP1 NDUFB7 TOMM34 MT-ND5 SUMO2 NAT8L NCBP2-AS2 HK1 PPP1CB COPS7A CLIP3 ARL1 CRIP2 TMEM141 RAB1A NDUFA5 PCSK1N ATP6AP1 LDHB DHCR24 C9ORF16 MT-ND3 CX3CL1 CAPNS1 ATP5B KITLG RPL13 CFL1 ALDOA CBLN4 ATP6V0B CTBP1 SV2B SNCB COMMD6 HOPX COX6A1 NEFH NUDT21 PSMB5 PFN1 PHYHIP RP11-632C17__A.1 TMOD2 BCAP31 PRKAR1A SEPW1 ESYT1 ENOPH1 NPTX1 BSG CBX6 MARCKS NEUROD6 SLC8A2 RNF11 WDR47 PCDH8 MLLT11 ZNF503 NFIA FAT3 ERH FTL NECAB1 ARL6IP1 PTK2B PTPRN SDCBP TENM3 FSCN1 SEZ6L CD63 HDLBP EID1 MTPN PIP4K2A GRIN1 GPX4 CAP2 OPN3 DYNLL2 CTSD ETS2 OLFM1 TPD52 GABARAPL1 OST4 ATP9A KLHDC3 ANXA7 UQCR10 NTN4 SCN2B TCEAL5 SYNGR1 MZT1 NAP1L3 GRIN2A ATOX1 GABARAP NUAK1 NDUFAB1 MT3 PPP2R2B NARS CHMP5 FAM174A LPPR4 YIPF3 UBA1 NDUFB2 PTMA HSPBP1 PAQR8 ASNA1 MMD NPTXR HMGCS1 CPLX1 DYNLT3 SNRPE SLC39A10 KLC1 CAMK2D CDK14 CPE PSMD12 DNM3 NRCAM NKIRAS1 FAM84A SCN4B UHMK1 TMA7 VSTM2A RBX1 RNF208 KCNC3 ANXA6 KIFAP3 HSPA4 MLF2 RPH3A BSN CABP1 LINC00116 RPL37A ZBTB45 EIF4G2 KIF21A BTBD1 GUCY1A3 MYL6 ARL8A GPX3 SLC25A4 RPS4X CA4 CDH13 GNB1 WBSCR17 DNAJB6 SERINC3 DNAJC4 PBX3 NAPA ATP1A1 EHD3 ZFAND5 CA10 PSMC1 RPL6 MIF BSCL2 NDUFA13 RNASEK-C17ORF49 NGRN RPL17-C18ORF32 IDS WI2-1896O14.1 RPS12 C18ORF32 RPS28\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "pyramidal neuron" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: CCK MT-CO2 MT-CO3 MT-CO1 ATP1B1 CHN1 RTN1 ENC1 MAP1B HSP90AA1 RTN4 PREPL SYT1 SNAP25 CARTPT GDI1 CALM2 NGFRAP1 YWHAG PRKCB APP NRGN PRNP ACTB DCLK1 GPM6A PSAP VSNL1 CHL1 GAPDH RTN3 CKB MTCH1 TUBB4B SEPW1 UCHL1 SLC39A10 ITM2C SERINC1 SLC22A17 GNAQ CADM2 YWHAH BEX4 PJA2 PSD3 MT-ND3 CALM1 ATP1A1 SPARCL1 TMEM130 NRCAM ENSA MT-ND2 NEFL NAPA PPP3CA OLFM1 PRKACB AK5 CALM3 SNX10 SCN3B EIF4A2 TPI1 NGEF MAP4 ATP2B4 SARAF HK1 PTMA SNRPN TSPAN7 MTRNR2L12 RPL41 UQCRFS1 ATP6V1G1 CYFIP2 NEFM EIF1AX UBE2QL1 PRKCE RGS4 PPP2R2C NAPB CAPNS1 RHBDD2 MT-CYB NUDT4 FAM174A RAB40B NPTXR TXN SNAP91 GPX4 SV2B TMEM59L PFN2 SLC17A7 CAP2 RASGRP1 NECAB1 SPOCK1 PDP1 TESPA1 ATP9A SYT11 THY1 CLTC PRKAR1B TSC22D1 RPL32 ATP6V1A NDFIP1 ARF5 ARL6IP5 CTBP1 UQCR11 DPYSL2 LYNX1 OCIAD1 FTL MPC2 DNAJC6 PTPRS RPL15 GABRA1 DPP6 BSG CD59 CLSTN1 MT-ND4 NCEH1 TUBB2A NSF ALDOA RP11-20I23.1 ATP6V0C KCNAB2 NDUFA2 NAP1L2 SEZ6L2 STMN4 C14ORF2 KLC1 SOX4 CAMK4 ARL2BP SLC12A5 DDAH1 CPNE4 BTBD10 FAIM2 GRIN2A SNCB ARF3 CTSD FIS1 HN1 DNAJC5 ATP2B2 C19ORF70 HOMER1 TMEM258 VAMP2 NEGR1 RAB2A BEX1 UBC CADM3 LANCL1 STXBP1 GOT1 MLF2 HNRNPH2 FASN RPL38 CTC-575D19.1 ARPC4 VSTM2L AKAP12 NMNAT2 PEBP1 CDK5R1 UQCRC1 SULT4A1 ACTR10 ATP6AP2 NDUFS5 RPL26 LMO4 PIK3R1 NDUFA5 ZBTB18 PFKP SIRPA TGOLN2 TAGLN3 RPS5 YWHAB POLR2L CREG2 PTHLH CYCS MT2A PPDPF PAK1 OAT FAM3C EGFL7 PPIA RORB SERF2 TMA7 SUSD4 SH3GL2 STMN2 COX6B1 LPPR4 FKBP1A HMP19 MT-ATP6 VDAC1 IDS COX5B PGM2L1 CNTNAP3 CMAS RPS15 TSPYL5 DIRAS1 TERF2IP TSPYL4 TUBA1B RAB3C USP5 PGK1 FBXO2 CHGB PCMT1 ATP5F1 DGAT2 TOMM20 TBC1D7 TOX3 NFE2L1 HMGCR PSMA7 CTNNA2 FTH1 STMN1 ACTR6 CX3CL1 AP3S1 PLCB1 GSTO1 GUCY1B3 HCN1 COX6A1 ATP6V1C1 CADPS2 CPE RLIM RASL11B PRKAR1A NDRG4 RPL39 BTBD1 CDKN2D ETFB FXYD6 NDFIP2 MDH1 FRZB MT-ND1 TPT1 UQCR10 SPOCK2 PKM JUND BTNL9 EXTL2 SYTL2 ZFAND5 PRELID1 MRPL20 PRUNE2 HIGD1A DNAJB6 SLC25A4 COPS7A EDF1 TCEB2 UBE2E3 MAGEH1 NUAK1 RSL24D1 UBA1 PLSCR1 IPCEF1 PGRMC1 TUBA4A ATP2A2 PPP2R4 CCDC115 C19ORF10 BRK1 FGF12 OAZ1 SERPINE2 MED31 PPP3CB TM2D3 FSCN1 GABARAPL1 ELMO1 FAM19A2 KIF1A GRINA SUB1 NDUFC2 ARPP19 RPL3 COX4I1 RAB6A ENO2 APLP2 PSMC5 WASL RPL13 ARL8B ADORA1 SKP1 PHYHIP UBA52 DYNLRB1 TRPT1 AP2M1 TMSB4X TSPYL1 HINT1 CDK17 MORF4L1 RAB5C CTNND2 C4ORF3 DHCR24 DYNLL2 ATP6V0B ARHGAP35 ATP6V0E2 FXYD7 DEPDC1B UBE2F PEA15 RAB6B CAMKK2 CNTN1 ANXA6 EGR3 CLU CIAPIN1 ATXN10 KCNC2 TMSB10 ATP6V1G2 TUBB3 NGRN PSMB3 BSCL2\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "pyramidal neuron" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MT-CO1 MT-CO3 MT-ND4 RTN4 MT-CO2 SYT1 SNAP25 MT-ND2 CHN1 RTN1 MT-ND1 ARPP19 MAP1B CALM1 ENC1 GPM6A PTMA MT-ATP6 CLTC RPS15 MTRNR2L1 FTH1 MTATP6P1 CALM2 ACTB MT-ND3 SNCA TSC22D1 VSNL1 MAP1A PPP3CA TMSB4X ATP2B2 STMN1 NEFL NRGN VAMP2 SNX3 GAPDH UHMK1 MT-CYB MTRNR2L12 SLC39A10 MDH1 NGFRAP1 MT-ND4L DCLK1 GNAQ ARL6IP1 H2AFZ MT-ND5 PIN1 UQCRC1 RPL39 NAT8L PRKCB UBE2V2 NDFIP2 RTN3 SARAF ALDH5A1 PRKACB NEGR1 CADM2 ATP6V1A CLSTN1 PRKCE OLA1 PPP3CB BASP1 SNCB PSAP EXTL2 APLP1 ATP6V1C1 ERH EPB41L3 CALM3 CACNG3 SYT4 COX7A2 ARF3 RAPGEF5 HSP90AA1 GABARAPL1 TBR1 SUMO2 YWHAZ PPIA ARL4D BEX5 ZBTB18 PSMD8 PTX3 ACTG1 SELM UQCRFS1 FKBP8 MTRNR2L8 COTL1 AK5 ACTR1A MTPN KIF1A PHYHIP KCNMB4 SYNGR1 UBC APP DNAJC6 DYNLRB1 PIP5K1B KCNA2 STXBP1 PDP1 BEX2 EIF1 PREPL NDUFA11 NAP1L2 SNRPN PEX5L NAPB LDB2 TMTC1 TSPYL1 SLC12A5 IDS TRHDE CAMKK2 WASL PFN1 KRAS TUBA1B SGCD SERF2 GNG3 PNMAL1 BRK1 SRP9 LMBR1 VDAC1 PKM DPYSL2 SCAMP5 PCYT2 TMA7 PNMA2 FAM19A2 IQSEC1 ANO3 EPS15 RPL3 MAPK1 SLC22A17 OAZ1 KCNAB2 DDAH1 RAB3A NAP1L5 ATP1A1 PPP2CB CPNE8 C11ORF31 FAIM2 PFN2 SRP14 WDR47 PACSIN1 NCDN HK1 SERINC3 TMEM59L HSPE1 CDKN2D CYFIP2 RNF11 ATP5F1 TPRG1L UQCRH MFGE8 NUAK1 ATP5I STMN2 PVRL1 HIGD1A LINC00087 KIF21A CDK5R1 TOMM20 PLD3 ATP5G1 HINT1 CAMK4 RAB6C-AS1 PRKAR1B SLC8A2 TUBB4B UBE2E3 MIEN1 CDH8 SNAP91 MLLT11 PAK1 EGR1 KLHL12 LINC01296 RPL41 SIRPA PEBP1 ELAVL4 ANAPC11 DIRAS2 PNMA1 FAM219A RPL37A LRRC59 CLU TESPA1 C4ORF3 RHEB PEG10 TMSB10 FBXL16 RPL18A CTXN1 PGM2L1 ENO2 YWHAB THY1 EIF4G2 EGFL7 OSGEPL1 RORB GABRA1 RAB11A YWHAH MTRNR2L6 REEP5 LMO4 SYN1 INSIG1 SCOC EID1 NELL2 YWHAG FAM127A ENO1 HSPB8 EVI2A RPL26 ATP2A2 CHP1 DNAJC5 ISCU FAM134A HSPA4 TAGLN3 DIRAS1 SLC24A2 STMN3 SOD1 FTL MORF4L1 PPP1R7 MC4R SH3GL2 OPCML ATP6V1E1 ITM2B KCNH5 KCNK1 ARL4C C1D KIAA1045 TUBA4A MYEOV2 ACTR6 ATP6V1G2 RPS28 RPL17-C18ORF32 ALDOA ATP6V0C C18ORF32 NSF RP11-20I23.1 RPL21 RPL7 RPL36A MIF\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "pyramidal neuron" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: SYT1 RTN3 ENC1 CALM1 SNAP25 MT-CO2 RTN1 MT-CO1 MT-ND4 MT-CO3 PJA2 THY1 SPARCL1 TUBB4A CALM3 APLP2 NDRG4 SLC17A7 GAPDH SARAF SLC39A10 RGS4 CALM2 NECAB1 TSPYL1 SIRPA CCK STMN2 MAP1B MT-CYB RTN4 PSAP FTH1 MT-ND2 SYN1 SLC24A2 PCMT1 DPYSL2 CHN1 TMSB4X C14ORF2 STXBP1 TPRG1L TESPA1 VSNL1 GDA CKB CNTN1 ARPP19 PPIA PPP3CA YWHAG LGALS1 GPM6A ENO2 NAP1L3 TUBA1B SYT4 CLTA HSP90AA1 EPHB6 TUBB PDE1A NEFL CLSTN2 UCHL1 NDFIP2 CLU CYCS SYN2 OAZ1 DHCR24 BSN PRKCB NDUFB8 COX7C TMSB10 MORF4L1 MAL2 PEBP1 ATP6V1F NDFIP1 ATP2A2 DNAJC5 PRKACB SYNJ1 ARL6IP1 GDI1 TAGLN3 SULT4A1 ACTB RPL37A NAPB PSD3 NDUFA4 SLIT1 USMG5 ALDOA RABAC1 ZBTB18 MDH1 BEX4 MAPK1 YWHAZ CREG2 FASN PEX5L BRK1 BEX2 COX6C NGFRAP1 YWHAB PRNP PSMD12 HK1 SCOC NCDN GPX4 CLTC VAMP2 TSPAN7 ITM2B REPS2 IQSEC1 TUBB2A MTPN RAN STMN1 SLC1A2 UQCRFS1 UBC SYT13 PFN2 HMGCR SERINC1 SYT5 RPL31 EIF4A2 SPOCK1 FKBP1A OPN3 SUMO3 ENSA DNAJC6 SMIM13 KIAA1045 PRKAR1B MPC2 NDUFA11 CTBP1 RPL38 MLLT11 TPI1 TOMM22 TMA7 ETS2 SNCA NEFM MPI NDRG3 GABARAPL2 BAD GNG2 TRIM35 MT-ND4L CALN1 RAB6B AC009014.3 RPS3A KIF5A MIF NAT8L CADPS2 FAIM2 TOLLIP ERH CTNNA2 APLP1 SCN1B EIF1AX ATP5A1 HS6ST3 ATP5G3 RPS15 STX1B BEX1 SPCS2 ABHD14A ATP1A1 TCEB1 PRDX2 WDR47 NDUFA13 MAP2K1 IPCEF1 NSF RPS27A ATXN10 OLFM1 NELL2 CPE KIF21A CDKN2D ATP1B1 MARCKS CAMKK2 PGRMC1 RPS28 CLSTN1 PAM RPL41 ATP6V1A PEG10 GNB1 CBLN4 FUNDC1 RPL13 CFL1 DCTN1 DYNC1I1 FXYD7 SLC6A17 CEND1 GUK1 GUCY1A3 SYT3 EGFL7 SH3GL2 MAP1A EDF1 BDNF SNCG TAC3 AES PKM RPL15 NGEF RPL26 PHYHIP APP VGF MMD BCL11B AK5 PPP2R4 COX7A2L RPL18A SLC25A22 PIN1 LANCL1 KRT17 MAPRE3 KLC1 TGOLN2 FAM84A SUB1 TOMM7 C19ORF53 MDH2 PRKCE DYNLRB1 HIGD1A KCNK1 CYC1 NUTF2 LMO4 ATP1A3 SCAND1 C2ORF47 CSDE1 TALDO1 WASF1 BSG CA11 PPARGC1A TCEAL7 DYNLL1 VWA1 GNG3 PTK2B RHBDD2 LRP1B MBOAT7 ARFGAP2 UQCRQ OXR1 COX6A1 MAP1LC3A MT-ND3 ERMN PGAM1 YJEFN3 TUBA4A MRPL12 JUND PRKAR1A YWHAH RAB2A PTPRT KRAS SEPW1 TBC1D15 PLS3 ASB13 RHEB CHCHD2 PI4KA UBE2M CDK5R1 NNAT SPTBN1 FAM219A PSMC5 TMEM155 GSG1L PRSS3 NPTX1 NPTXR SCD5 NDUFB4 VDAC1 ATP6V0E2 CAP2 PRDM8 THOC7 ATP6AP2 PSMC1 NUAK1 SOD1 PSMC3 MLF2 UBA52 TRIM36 PLCB1 BASP1 CYFIP2 RPL26L1 DSTN PIK3R1 PVRL1 PPM1A TRAPPC1 GHITM ATP6V1G2 ATP6V0C RP11-20I23.1 NUDT4 NGRN SYTL2 ESCO2 RAB3B ZNF385D\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "pyramidal neuron" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: CLU RTN1 TSPAN7 SNAP25 PRNP ENC1 GPM6A MT-CO3 CALM1 RTN4 CALM2 CHN1 ARPP19 MT-CO1 CCK LMO4 ATP2B2 PSAP SYT1 APLP1 PHYHIP TMEM59L HSP90AA1 MT-ND4 SERPINE2 CPE TSPYL1 NEGR1 PPP3CA PDP1 SARAF SLC12A5 NRGN GAPDH ITM2C TMX4 PEBP1 PREPL ATP1A3 MAP1B ARF1 SERPINI1 CLSTN1 TUBB2A THY1 ACTB NPTX1 UQCR11 SLC22A17 PACSIN1 BASP1 ATP2B4 ATP6V1E1 VSNL1 HSP90AB1 ATXN10 TUBA4A PLCB1 NAPB SOD1 SEZ6L2 MTRNR2L8 PGAM1 MT-ND5 SERINC3 BANF1 COX5B PCMT1 YWHAH CTNND2 NEFL RTN3 ENO2 SLC39A10 SYNPO GRIN2A ATP1A1 DIRAS2 NDRG4 ITM2B PEX5L TSC22D1 PPP2R1A LYNX1 SLC8A2 MTCH1 TCEB1 MT-ND1 ARL6IP1 FAIM2 GHITM CREG2 SERINC1 ATP1B1 YWHAG CADM2 TMA7 ANXA7 DPYSL2 MTRNR2L12 IPCEF1 RPL41 CLTC NRCAM PRKACB UQCRH PRDX5 STXBP1 PLD3 PSMA7 PTMA CLIP3 PNMAL1 PSD3 NDFIP1 ATP6AP2 TCEB2 CD63 TMEM130 CAPZA2 VAMP2 MT-ATP6 WBP11 CAMK4 SLC9A6 VSTM2L FAM174A DKK3 SLC17A7 CRYM COX4I1 APP UCHL1 ENOPH1 PPP3CB RGS4 ATP6V0C RNASEK-C17ORF49 IDS RP11-20I23.1 PPIA POLR2I NDUFS5 MRPL51 KCNK1 MIR6723 RXFP1 CCT5 NPTN ATP2A2 INSIG1 CAPNS1 SV2B GABARAPL2 RCAN2 LINGO1 CYFIP2 VPS35 PTPRN PRKAR1B TM2D3 USMG5 FBXL16 CISD1 BSN CCDC85B COA3 OLA1 ATP5J EXTL2 CAP2 SH3GL2 MAP1LC3A SELT RPL37A RHEB ATP6V0B CBLN4 DNAJB6 SCOC SEZ6L FAM134A RAP2A BEX2 C19ORF70 RAB11A PRKAR1A CA10 PIK3R1 PI4KA SUMO2 KCNV1 RAB3C RPS27A ADAM23 GDI1 TBR1 MT-CO2 AP2B1 BAD CAMKK2 PPP2R2C KCNAB2 EIF4A2 ANXA6 SYT11 SEPW1 DBNDD1 CALM3 MGST3 SSTR1 POMP NCEH1 C1ORF115 CDK17 DDAH1 ATP5G3 CFL1 CADM3 DPP6 PRPS1 NCAM2 GSKIP SULT4A1 YWHAZ SYT4 NKIRAS1 ITFG1 ATP9A ENSA C1ORF52 ZFAND5 CXXC4 FAM3C SPARCL1 HNRNPH2 YWHAB SCD5 NDUFA12 SNCA NDUFB10 BRK1 GABRA1 MORF4L1 LINC00116 HOPX HN1 SPTBN1 HAPLN4 MT-ND3 SNX3 IGFBP5 GRIN1 MTATP6P1 SCAMP5 TOMM70A UQCRC2 OPA1 GUK1 RAB3A IQSEC1 AC011043.1 TPD52 RPL35 GPX4 ARL1 ATP6V1A CTBP1 COX6B1 NDUFV1 GNG3 MAGEH1 RHBDD2 PRKCG ALDH5A1 DYNLRB1 ARL8A RPL21 LDB2 SIRPA NPTXR ELMO1 LAMTOR1 KCNA2 COPS8 REEP2 LMBRD2 PSMB7 KIF3C MAP1A DMTN CALB1 UBE2E3 AZIN1 SUB1 EPS15 UQCR10 LGALS1 CAMK2G EIF1AX FAM84A UBC TCEAL2 VDAC2 PPDPF ASAP2 CD99L2 PDE1A NDUFA4 HIGD1A DIRAS1 ATP5J2 GOT1 CD59 LAP3 BEX1 C16ORF13 MTRNR2L1 CIAPIN1 GPR158 PRKCB ALDOA PNMA2 ATP5A1 FBXL15 TUBB3 EPHB6 NCALD PEA15 UBE2N UQCRB TMSB10 SPON2 NOS2 PRDX3 NARS TRHDE LSM4 SCG2 APLP2 EFR3A TSPYL4 NECAB1 RPL39 RPS28 SPCS2 PKM ARF5 NELL2 ATP6V0D1 ATP6V1B2 JUN CDC37 OCIAD1 CKB ATP6AP1 STK39 MYO1G DYNLL1 MYRIP TAGLN3 TUBA1B C2ORF80 ATP5G1 SLIT1 NCBP2-AS2 UBL5 WSB2 GRPEL1 MAPK1 WFS1 PINK1 KLC1 ZNF365 TMEM70 SMIM13 ELAVL4 SCN3B MAST3 PTK2B MIF RPL6 C18ORF32 NSF RPL17-C18ORF32 PSMB3 GABARAP BSCL2 RPL26 IFI27 PLEKHD1 PCDHGA5 PCDHGA10 PCDHGA6\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "pyramidal neuron" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: CHN1 CCK MAP1B SNAP25 SYT1 MT-CO1 GPM6A UCHL1 CLU CALM2 HSP90AA1 RTN3 TUBA1B CALM1 VSNL1 SNCA FAIM2 BEX1 GDI1 PSAP DPYSL2 PRNP ENC1 COX17 RTN4 SPARCL1 THY1 STMN1 ATP6V1A SCAMP5 SNRPN TMSB10 BSN TUBA1A YWHAZ RTN1 SPOCK1 NRCAM AK5 MT-CO2 RPL41 NUAK1 MT-ND3 DNAJB9 SARAF CADM2 FTH1 HSP90AB1 RAB3A MT-ND4 TSPAN7 OAZ1 UQCRH ARL8B MAGED2 NDUFA1 MTRNR2L1 MT-CO3 ATP9A DYNLL1 ELAVL4 SERPINF1 NDUFB2 C12ORF57 PNKD WSB2 UQCRB CPLX2 BSG MAP2K1 TMSB4X RGS4 SYT11 SEPW1 TUBB2A AP1S1 GNB1 PKM SLC9A6 SV2B TOMM20 DYNLL2 CNTN1 CLSTN1 SLC7A1 RNF11 DKK3 PSMD2 ACTB RPL37A NEFL UBL5 ARL6IP1 BEX2 ATP2A2 VAMP2 APLP1 ATP1B1 LYNX1 GNG3 SLC38A1 NDUFB7 MORF4L1 ATP1A1 KCNAB2 YWHAG TOMM7 PREPL CFL1 GAPDH PNMA2 KLC1 NRGN ATP2B2 ELAVL2 TUBB4B EIF1AX PCMT1 CPE SPOCK2 SCN3B CYFIP2 RAB2A SNAP91 HS3ST2 TSPYL1 CHGB NDFIP1 PCDH17 ATP6AP2 EPHB6 SLC25A6 CMAS PEX5L ATP6V1E1 MAL2 PLD3 SCN1A TMEM35 PSD3 NBL1 SIRPA FXYD6 ITM2C TUBA4A RPL23A NDUFC2 FJX1 HPRT1 OLFM1 WBP2 ATP1A3 SNX10 ATP6V0B MRPL20 SLC22A17 MAP2K4 SQLE OPA1 ENO2 COX14 RPL35 ATP6AP1 RHBDD2 NDUFB1 C1ORF52 TCEAL3 GPR158 VDAC1 COX6C MT-ND1 GRIN2A AP3S1 CDKN2D GABARAPL2 NPTN KCNV1 MAP7D1 DYNLRB1 GHITM SPRYD3 SLC30A3 NDUFA8 MT-ND2 PHYHIP SLC6A17 SUB1 ATP6V0E2 NDUFA13 VPS35 ATOX1 CYB5R3 NEFH NDUFS5 BTNL9 DNAJC6 TMA7 FBXL16 TRIM37 TAGLN3 EIF4G2 DNM3 SEZ6L2 PGAM1 SYNGR3 CTBP1 EHD3 GPX4 NAPB YWHAH STMN3 APBB1 AP2M1 ARPP19 GAP43 UROD SOD1 ADCYAP1 C7ORF50 SSTR2 HK1 LMO4 PAFAH1B2 CADPS2 MORF4L2 ATP6V1C1 CYC1 DHCR24 RRM2B MBP TCEB2 PLCB1 RPL6 ANO3 VEGFA CBX6 LAMTOR2 PPP3CB C6ORF1 MYL6 RASL11B PSMA7 IDH3A NKIRAS1 MTCH1 CALM3 SELT C11ORF31 NDUFAF2 NHP2 ATRN YWHAB OXCT1 PI4KA ATP5G1 KLHDC3 SCD5 KIF3C UBE2V2 CERS6 AKAP12 ATP6V0C SMS TIMP2 PRDX5 NSF GSTO1 MRPL33 MAP1A RAB6B FASN LINC00116 DIRAS2 TMEM130 POLR3H CDK14 PHYHIPL RAPGEF5 EGFL7 ATP5B PRKCB LGALS1 TCEA2 TCEAL7 STMN2 PTK2B NREP C14ORF2 NDUFB3 TMEM59L ALDOA APP GALK1 MAST3 UQCR11 SERINC1 JOSD2 ACAT2 PEBP1 PGRMC1 LRP1B APOD SERP2 PPP3CA ANXA6 TMX4 SYNJ1 MT-CYB NDUFA2 GABRA1 COX6A1 MZT2B TBR1 SYNPR SLIT1 NRF1 RPL12 PSMD12 NGFRAP1 EIF1 SNN ZBTB18 SUMO3 LINC00086 ACTR6 RP11-20I23.1 PDE1A MAPRE3 TCEAL2 STMN4 RLIM RORB BEX4 RPL36A KIF5A NDRG4 CFL2 USMG5 PACSIN1 ATP6V1B2 GORASP2 NOV STX1A SLC25A5 WASL AKR1C2 SYNGR1 NARS C1ORF115 SKP1 CNP FAM198B KIF1A NAPA PFN2 CMPK1 PMP2 SNCB ARL8A GOT1 SEMA5A STXBP1 RHEB NWD2 PTPRN GABARAPL1 OTOA SLC24A2 FXYD7 TKT RPS28 ARL6IP5 RPH3A NEK7 IDS BSCL2 RNASEK-C17ORF49 RPL13A RPL17-C18ORF32 RPL17 DNAJC21 TBC1D15\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "pyramidal neuron" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MT-CO1 SYT1 CHN1 SNAP25 MT-CO3 RTN3 RTN4 MAP1B PRKACB CALM2 TMSB10 CALM1 NAPB CLSTN1 ENC1 RTN1 GPM6A PRNP CLU NEFL MT-ND4 SERINC1 FTH1 CPE PSD3 SLC17A7 ITM2B FAIM2 STMN1 TMSB4X PSAP HSP90AB1 MT-ND3 SYN2 ATP1B1 VAMP2 MT-CYB MT-CO2 MT-ATP6 TUBA1B THY1 NECAB1 SPARCL1 CALM3 MT-ND2 NRGN DPYSL2 ARPP19 PRKCB PKM YWHAH UCHL1 SNX10 SEPW1 EIF4A2 RP11-20I23.1 ATP6V0C CADM2 TMX4 SYT11 ATP6V1B2 TUBA1A NGFRAP1 KIF1A GDI1 TUBB2A CCK ACTB CDK14 SERPINI1 VSNL1 OAZ1 FXYD6 HMP19 ACTG1 SLC39A10 NDFIP1 ATP2B2 PHYHIP ATP1A1 ATP1A3 CHL1 NEGR1 SERF2 DKK3 SNCA DNAJC5 SARAF GABARAPL1 CKB MTCH1 HSP90AA1 BASP1 SCAMP5 GNG3 NDRG4 LMO4 YWHAG APLP1 SNRPN ARF1 PRKAR1A CTSD STXBP1 SYT4 SCN3B ATP6V1A FAM3C SPOCK2 MTRNR2L1 GAPDH PPP2R2C DYNLL1 IDS RAB3C HPRT1 SKP1 PSMC5 BEX1 DCLK1 APLP2 STMN2 PREPL PGM2L1 TGOLN2 SYN1 RASGRP1 FAT3 APP AP2B1 CDK5R1 TSPAN7 AP2M1 OLFM1 TMEM59L SLC6A17 RAN LMBRD2 MT-ND1 ITFG1 ENO2 KIF5A ATP6V0D1 ELAVL4 RABAC1 TOMM20 NGRN PAK1 PET100 SYNGR1 CRYM ATP2B4 KCNMB4 PPP2R4 SV2B GRIN2A SH3GL2 FXYD7 CDH8 TPPP ARL6IP5 PCP4 NRCAM CADM3 BSG MTPN SCD5 KLC1 ARL6IP1 STMN3 NUAK1 RAB6B LDHB TSC22D1 CFL1 ARL8B SYNJ1 PTPRN RFK PLCB1 CAP2 DIRAS2 PEX5L TCEA2 SERINC3 NREP SOD1 RAB6A GABRA1 NEFM PJA2 CNTN1 ELAVL2 OCIAD1 PDP1 PPP3CA NSF PTPRN2 GAP43 COX6B1 PLD3 GDA C11ORF31 SNCG CAMKK2 PIN1 FTL NCDN CABP1 B3GNT1 COX7C EGFL7 PEBP1 SCG2 PARM1 SELT BEX2 UQCRH C6ORF1 MYEOV2 UQCRQ ATP6AP2 CTNNA2 NAP1L2 CX3CL1 CDKN2D SPTBN1 ATP6AP1 TALDO1 CLSTN2 SCOC NAP1L3 NDUFA1 NPTN LANCL1 CYFIP2 ATP6V0B DYNLRB1 SLC12A5 RPL23A GRIN1 NRN1 PNMA2 TOLLIP VPS35 MORF4L1 SUB1 ENSA PIK3R1 PGAM1 RPL35 SULT4A1 HMGCS1 PFN2 KCNC2 SLC24A2 ALDOA KIFAP3 C14ORF2 BCAP31 NDUFB11 NARS SLC22A17 OPRM1 TMEM130 PNMAL1 ZBTB18 PI4KA DNAJB6 NPTX1 ATP5E CA10 WSB2 RPS28 RPL11 ATP5B RPL41 SIRPA SLC9A6 ANXA7 PPM1A GUCY1B3 PTK2B TPI1 SNN CREG2 PPP2CB EIF1AX NCEH1 GHITM DPP6 NUDT4 ASAP1 WBSCR17 RPL38 CMAS MT-ND4L EHD3 PPIA CAMK2G EFR3A HPCA PCSK1 MZT2B PELI3 CA11 SPOCK1 SLIT1 PVRL1 RAB11A PLCXD3 NOV MLF2 AK5 ERH GNAQ YWHAB CTXN1 PTGES3 RPL36A SLC25A22 MAPRE2 HS6ST2 C14ORF132 TCEAL2 SNAP91 RPL32 EGR1 ABHD8 C18ORF32 UBL5 HTR2A VDAC2 PTMA NGEF LPPR4 MAOB TBCB ARHGDIA NDUFA13 PPDPF NDFIP2 KIF21A EPS15 BAALC C7ORF50 DPY19L1 COX6A1 GOT1 CD99L2 BLOC1S1 RPL31 SLC38A1 TUBA4A TSPYL4 POLR2I CAPZA2 GSK3A NELL2 NAP1L5 RNF208 TIMP2 CXXC4 TPT1 NHP2L1 TSPYL1 MAPK1 ATP9A UBE2QL1 KCNA1 ATP6V1C1 HK1 SPRYD3 PEG10 GNB1 DNAJC6 CD59 IPCEF1 TCEAL7 AP1S1 CLDND1 PPP2CA VSTM2L HINT1 UBE2M UBE2V2 BSN RPS15 NDRG3 FKBP8 TMA7 ATP2A2 BAI2 BRK1 SPCS2 LYSMD2 RGS4 PRKAR1B LINGO1 RPS3A CRIM1 HMGCR SRP14 IDI1 BAG4 GABARAPL2 ACP1 EDF1 PTPRS LAGE3 TUBB3 ATP6V1E1 D4S234E PPP1R9B CBX6 RPL13 SMIM13 USMG5 CAMK4 CTNND2 EIF4G2 DNM3 NCALD AP3S1 NHP2 GMFB MDH1 UBQLN2 RPL26 GABARAP CERS6 CLTC CDS1 BNIP3 RP11-195F19.5 BEX5 FAM127A NDUFC2 NPTXR KIF3C ETS2 OAT WASF1 NAT8L TUBB4B COX7A2L IDH3A NDUFB7 ACTR10 PRUNE2 SH3BGRL2 TMOD2 SNCB ETV1 RNASEK-C17ORF49 MTRNR2L6 MTND1P23 SCN2B FAM134A ZNF365 ACTR1A PRDM8 OXCT1 SEC61G VDAC1 NDUFS6 PDE1A MCHR2 CISD1 COPRS RAB1A EFHD2 PSMD12 AKAP12 FBXL15 MPI C9ORF16 DNAJB9 POMP PPP2R1A TUSC2 CYC1 CNTROB RAB27B RPL15 PPP3R1 DNAJA1 MAGEH1 RCAN2 SLC8A2 SEZ6L2 PAM ACOT7 C19ORF53 SYT13 YWHAZ MYL12B NCOA4 ATP5F1 C19ORF43 PCDH17 GPR26 NTNG2 ARHGDIG NMNAT2 SQLE ZNF574 PLS3 POLR2L MPPED1 ARL2BP RPS5 EID1 CMPK1 NTN4 YJEFN3 C1ORF95 RPL8 COPS7A SMIM12 RPS27A UQCRC1 CLPTM1 DSTN GOT2 GUK1 TSHZ2 FSTL5 BSCL2 TWIST1 HSPE1 C3ORF80 ARF3 LDOC1 MRPL47 TLN2 CFL2 HDLBP SUMO3 SSTR1 BEX4 ALDOC OST4 RAPGEF5 PACSIN1 CLIP2 C1ORF233 ARPC4 MAP1A ASB13 CDK17 RPL18A KIAA1045 MT3 VSTM2A CACNB1 ATG101 MYL6 YIPF3 BTBD1 RAMP1 SLC7A5 SMS ADCYAP1 KCNAB1 MRFAP1 PTPN20A TRHDE CHMP4B PGRMC1 TENM3 DCTN1 PSMB7 SYT17 NBL1 NDUFB8 PRPS1 RRAGA DIRAS1 CDK5R2 PCMT1 CEND1 KCNV1 COX7A2 MAP1LC3B SDHAF1 TMEM147 DNER RPL7 ELOVL7 ZNF880 SYNPR USP5 NNAT YWHAQ VDAC3 KLHDC3 ENO1 MARCKSL1 HOMER1 FRMPD2 CHMP5 SUCLA2 STX1A SMYD2 GRM3 SDCBP CCDC115 WDR47 TMEM70 EIF1 POLR2M TMEM155 PMEPA1 KLF10 DUSP6 PAQR8 IFI6 WARS ANAPC11 PEA15 CAPZB PGK1 SAP18 PINK1 RHOB EPHB6 AHNAK2 ATP6V1G1 EPHB1 CD63 HCN1 RPL39 ELTD1 GORASP2 NDUFA4 SEZ6 DYNLT3 CSDE1 ARL8A PCDH19 SEPT4 SSBP3 RAB7A UQCRB MDH2 SLC30A3 TPD52 CNTNAP5 REEP5 FSCN1 TRAPPC1 ITM2C SUMO1 OTOA FARSA CYCS RBX1 MZT1 F8 INPP5F FBXW11 UBE2N UBE2D2 ABHD14A MAP2K1 HOPX NFE2L1 SYTL2 BEND5 MRPL37 PAQR9 C1QBP ATP6V1G2 RHEB IQSEC1 OPCML GABRA5 UBA1 MIF ATP5J2 PCSK1N MFSD6 UQCRFS1 OPA1 MTRNR2L12 OLFM2 AP2S1 TMEM65 TXNDC17 CNR1 HIGD1A NDUFA11 NDUFA8 MAP2K4 ARFGAP2 MGST3 C1D KCNK1 RASGRF1 BAD DDAH1 RAB2A RHBDD2 TMEM151A TMEM150C RNF11 NME1 FJX1 RPS10 TKT NRSN2 ARL4C TM6SF1 SNX3 RPL21 UBL4A ATOX1 THOC7 MFN2 COA3 APBB1 BTBD10 CORO2B CYP26B1 HIST1H2AC RP11-219A15.1 MYRIP YAF2 CRYAB LINC00086 PTPRT NDUFAB1 LHFP RPS19BP1 UBB RPL37A HS6ST3 TXLNB CPNE8 SNX17 CLIP3 UQCR11 ATP5I FBXL16 TUBB4A GSTO1 ATP6V0E2 FAM19A1 SYNPO COPE MAP2K2 SEZ6L ATPAF1 OXR1 MAPRE3 MED10 OPN3 TMEM200C ISCA1 HSPA4 RAB40B WBP2 KCNAB2 FAM163B STMN4 NDUFS5 PPP3CB COX5B PSMA7 CHCHD2 RPL17 NEFH IGSF21 GPX4 CDC42SE2 NDUFAF3 CCDC85B PSMB5 CHP1 CDH7 EXTL2 REEP2 ABCC12 STX1B IMMP1L MRPL15 MT-ND5 ARL4D PRDX3 UQCRC2 FIS1 JUND MAP4 EIF5A2 HSPA8 CADPS2 ROBO2 TUBB PCDHA10 PCDHA4 PCDHA9 PCDHAC1\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "pyramidal neuron" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MT-CO1 MAP1B SYT1 SNAP25 CHN1 CALM2 MT-CO3 NRGN MT-CO2 VSNL1 CLU RTN3 CALM1 TUBA1B ATP1B1 SPARCL1 RTN4 PKM RTN1 MT-ND4 MT-ND2 CALM3 CLSTN1 GAPDH HSP90AA1 NEFL MTRNR2L12 THY1 FAIM2 ATP1A1 MTRNR2L8 PSAP ACTB NDRG4 NAT8L BASP1 UCHL1 MT-CYB CKB NEFM TPI1 CCK NAPB MTRNR2L1 VAMP2 SULT4A1 FTH1 ATP6V1B2 NEFH PJA2 TMX4 ATP2B2 TUBA4A ENC1 GPM6A YWHAG ATP2A2 SLC24A2 GAP43 MT-ATP6 SNRPN VAMP1 RGS4 STMN2 OLFM1 DCLK1 SLC22A17 SLC17A7 TSPAN7 PPP3CA NPTN TSC22D1 ARL6IP1 NDFIP1 SPOCK2 SLC12A5 GDI1 TMSB10 YWHAH HSP90AB1 TMSB4X PGAM1 APP SV2B OAZ1 YWHAZ VDAC3 MT-ND1 PEBP1 DKK3 EPDR1 PRKACB KIF1A SERINC3 NGFRAP1 EIF4G2 DPYSL2 GABRA1 PTPRN MYL6 LYNX1 CADM3 CABP1 ITM2C NDUFA4 DYNLL2 NARS MAP1A OCIAD1 CAP2 YWHAB SERINC1 HINT1 ARL6IP5 ENO2 KCNAB2 MTATP6P1 SPOCK1 ATP1A3 RAB3A ZFAND5 RHEB NUAK1 ADAM23 TCEB2 NSF EID1 PREPL CPE SCN1A OXR1 SNCG PPP3CB PRKAR1B SNCA GABARAPL1 ARPP19 APLP2 STMN3 CSDE1 NCEH1 SNX3 STXBP1 SYT11 CADM2 COX6A1 ACTG1 NUDT4 ETS2 SEPW1 WDR47 UBB EIF1 SIRPA EFR3A CPLX1 LMO4 ATP6V1C1 TSPYL1 CPLX2 STMN1 PIK3R1 PAK1 NGRN MAP2K1 RCAN2 FLOT2 DNAJB6 SNCB ATP5B SCAMP5 NRCAM SYT4 CAMK2G NECAB1 KCNC2 LGALS1 EIF1AX TMA7 NEGR1 NCDN DYNLL1 RNF11 COX4I1 DIRAS2 PI4KA MAP2K4 SUB1 SARAF ATP9A BSN TM6SF1 PFN2 TAGLN3 FAM84A FKBP1A SYNGR1 PRKCB BNIP3 CFL1 SKP1 PTMA SLC39A10 PPP2R1A SMIM13 PTK2B BEX2 PSD3 IDS ARF1 COX7C SPTBN1 BAI2 TMEM130 USMG5 OPCML UQCRH EIF4A2 CNTN1 NAP1L3 APLP1 SCN4B ARF3 TMEM155 PNMAL2 KLC1 FAM3C ARF5 CDS1 SYN2 MAPRE3 ATP5G1 NUDT21 GRIN2A MIR6723 CYFIP2 LMBRD2 CREG2 CAPZA2 PRKCE ISCU CAPZB SSBP3 ATP6AP2 SEZ6L2 SLC38A1 FXYD6 PPP2CB NDUFA5 IGSF21 GABARAP UBL5 EFHD2 PLCB1 CDC42SE2 SLC25A6 WBP2 DNAJC6 PHYHIP RAB7A NHP2L1 WBSCR17 PRDX5 LAMP5 RHBDD2 TMEM150C FTL PNKD RBX1 ZBTB18 DSTN SYT13 PPP2R2C SLC17A6 POLR2L LGI3 SPCS2 BSG ANXA6 HSPA8 SLC9A1 SNRPE FGF12 LDB2 RAB6B ATP6V1A PRNP AK5 NAP1L5 TRIM37 SCN1B ARHGAP35 RAB3C MT-ND5 PGM2L1 PDP1 SOD1 BEX1 NRN1 GPX4 MAPRE2 SRP14 TMOD2 INA TUBB2A SNX10 RPL37A TBCA CISD1 RPL38 IPCEF1 PCP4 NMNAT2 UQCR10 CDKN2D RPS28 IQSEC1 PNMA2 NGEF ELAVL2 NDUFA13 MT-ND3 ATP6V1E1 RP11-20I23.1 MTRNR2L6 ATP6V0C BTBD1 NDUFC1 ZMAT2 PCSK1N SUMO2 HSPB1 ALDOC C1ORF115 LDHB PRDM8 KIAA1045 RPS15 CLTC CACNB1 PSMD2 PFDN4 GABARAPL2 C6ORF1 CTSD CDCA7L HCN1 FAM131B TOMM34 ENO1 RAB2A SYN1 FBXL16 ARHGDIG EDF1 CDK5R1 SLC1A2 GNAQ MGST3 MAPK8IP2 FARSA BEX5 VSTM2A ENSA ATP5J CAB39 CDK5 KCNA1 CTXN1 PHYHIPL PCGF1 WASF1 PTGES3 SNAP91 PPIA STUB1 TPRG1L AP2S1 MRFAP1 COX7A2 WSB2 UBC RPS5 UBE2QL1 PDE1A PLD3 TOMM20 HMGCS1 INPP5F UQCRB HMP19 CBX6 ATP5J2 COX8A D4S234E GNB1 GNG3 MAPK1 COX5B SH3GL2 PACSIN1 CCDC124 SYTL2 PIN1 TOLLIP WASL PRKAR1A TCEAL2 FAM163B NAPA ARPC4 C11ORF31 UROS ARL8B DCTN3 MAST3 UBL4A KCNF1 EGR1 MLF2 GUCY1B3 UQCRC1 ARPC5L SCN2B MORF4L2 TPT1 PCDHB4 PPP2CA OAT MRPS21 RPH3A OPRM1 CMAS S100A6 BTBD10 ATP5I MAL2 TMEM35 SCD5 SPP1 SNN PCBP1 CEND1 ATP6V1G1 CERS6 C14ORF2 SERPINI1 ZNF365 NAP1L2 SLC6A17 KCNA2 KIF21A DYNLRB1 SLC25A4 BAALC GPX1 NDUFA1 RPL13 NRAS FKBP8 NDUFAB1 BEX4 PGK1 AKAP12 MAP2K2 SH3BGRL2 ATG9B MYEOV2 TLN2 CRIP2 NEUROD2 SV2C DUSP6 FAM198B OPRK1 RNF181 DIRAS1 RPL12 EDIL3 TMEM65 FNDC4 TCEB1 RAD23B PCDH8 UHMK1 KLHL12 PTPRM NPTXR PFN1 NDUFS6 ENPP2 IDH3A PPP3R1 DBNDD1 RAPGEF5 SOSTDC1 VDAC1 BANF1 COX5A CLIP3 SLC7A8 PSENEN TRAPPC1 CHP1 SLC9A6 PDZRN4 CD99L2 FAM96B CHAC2 B3GNT1 DNER SLC30A3 LAMTOR5 RHOB TSHZ2 NDFIP2 F8 RPL15 SYT2 ETFB GPCPD1 TESPA1 ATP6V1F KIF5A ANK1 WFS1 GPX3 REEP2 SLC2A1 PSMD8 CAMKK2 HIGD1A MT-ND4L STXBP6 RASGRP1 PTGDS HTR2A LINGO1 PGRMC1 PFKP PPTC7 FIS1 TMEM14A PPDPF ATP6V0B PITPNA TUBA1A TSPYL4 CYSTM1 PEX5L PELI3 PPP2R4 LRRC59 GSKIP DNAJC4 NDUFA2 LYSMD2 SLC7A1 UQCRFS1 COPS8 RPL18A TBCB EGFL7 PLP1 ELAVL4 MRPL33 TM2D3 PEG10 AQP4 DLD ISCA1 C1QBP TRIM47 FAM127A HN1 CHMP4B ABRACL EXTL2 PSMD12 GSTT1 TMEM59L NPTX1 ATP2B4 TPD52 KCNV1 CHL1 HPRT1 NDN ITFG1 HDLBP PRKCG TEX2 SERPINE2 GSTP1 HNRNPH2 CDH22 RANBP1 CAPNS1 PITHD1 USP5 ALDOA CCDC85B ACOT7 LIMK1 COX7A2L KIFAP3 IFI6 RASGRF1 SH3RF1 ITM2B PPP1CB PFDN1 C2ORF80 POLR3H C1ORF233 PAQR9 MAP7D2 ASAP1 NDUFB1 PPM1A POMP DNAJC5 MFN2 CYCS MDH1 UBQLN2 TPGS2 ERH RPL31 CCDC115 CD59 TCEAL7 RAP2A CCT5 ARL4D CETN2 KCNC3 TGOLN2 RORB OPA1 RAN TUBB3 PAMR1 CADPS2 RTN4R ARHGDIA OXCT1 SCOC DNAJA1 MAP1LC3A LMO3 TMSB4XP4 MAGED1 SNX22 HDDC2 AP2M1 GMFB PNMA1 CDK14 CIAPIN1 STX1A TKT EGR3 TSPYL5 UBE2E3 MTCH1 LINC00116 NDUFB4 SERPINF1 ACTR6 RPL32 TRIM36 NHP2 NEXN MMD PLS3 TBC1D7 VDAC2 ATP6V1G2 CNDP1 WARS HOMER1 RPL17 TBR1 GOT2 COPG1 SUCLA2 CLIP2 MAP4 OR6D1P JUND GFRA2 ADSS SDCBP SYNJ1 HEY1 YAF2 SCG2 COMTD1 PIP5K1B MAP1LC3B SAP18 RAB11A FKBP4 GRIN1 SLC8A2 ARL8A CLTA EHD3 NIPA1 LINC00086 ALDH5A1 CFL2 SRM NEUROD6 NPTX2 ANKRD18A MPC2 C9ORF16 EMCN CHMP5 TUSC2 NDUFB3 BCAP31 RPL39 UQCR11 PCMT1 ADD2 ESYT1 FAT3 PSMB7 MRPL15 RFK KCNK1 AP1S1 SPRYD3 GHITM CHGB CKS2 PTPRN2 DYNC1I1 GSK3A MFSD6 PHB MPPED1 MT3 ASNA1 NDUFB7 CNP GRINA C19ORF10 NELL2 ATP5F1 PPP2R2B CDK5R2 PSMA7 PCYT2 FABP3 EPHB6 COQ10B EEF1A2 ID2 HK1 COTL1 FABP5 NDUFV1 COL25A1 KLHDC3 VPS35 DHCR24 RPS2 DNM3 H2AFZ RAB4A SKAP2 VGF NDUFB5 MORF4L1 MZT2B C19ORF70 KCNH5 ARFGAP2 BCAS2 RPL26 C7ORF50 RRS1 BCAT1 NRIP3 TMEM147 EPB41L3 PRPS1 PRUNE2 C12ORF49 SERP2 FAM219A SELT NDUFS5 CLDND1 MYL6B ATP6AP1 CYB5R3 NDUFB2 RSL24D1 MSMO1 SUMO1 GLO1 FSCN1 TUBB4B SYNGR3 UBE2V2 NCOA4 LZTS1 NCAM2 RNASEK-C17ORF49 BSCL2 RPL41 TMEM191A RPL21 TF MIF PCDHGA5 PCDHGA10 PCDHGA6\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "pyramidal neuron" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: SNAP25 SPARCL1 SYT1 STMN1 ARPP19 APP GAPDH PSAP SEPW1 CFL1 RTN4 CHN1 HSP90AA1 APLP1 COX7C MAP1B TUBB2A PKM CCK PRNP ENO2 CLU NRGN SARAF DIRAS2 CADM2 ARL6IP1 PPP3CA ATP2B4 SERINC1 BSG VSNL1 SYNJ1 MT-CO3 MT-ND4 PLD3 EFHD2 APLP2 GRIN1 FAT3 RPS3A CKB PCSK1N CALM2 HSP90AB1 GHITM EGFL7 NRCAM ARPC5L SYT4 ITM2C CDH13 ATP6AP2 PPP3R1 SCD5 NCALD PRKCB NGFRAP1 TUBA1B MFSD6 NEFL OLFM1 HS3ST5 ATP1B1 PTPRN CALM3 EIF1AX NDUFB2 RBX1 TMEM59L CALM1 CHMP4B EIF4A2 NCDN MT-CO1 NCEH1 YWHAH SUSD4 ISCU NPTN PGAM1 GABRA1 RNASEK-C17ORF49 MPPED1 UBE2N SLC22A17 PCMT1 ARF3 TCEB1 GADD45GIP1 HSPA8 UBA1 RPL7 NIPA1 TGOLN2 ATP1A1 IGFBP2 TBCB PLEKHH2 ATP2A2 ABHD8 RAN CDC42SE2 SYT11 EFR3A CA11 SYNGR3 TRMT112 ITFG1 COX8A IDI1 MAPK8IP2 DIRAS1 PCDH19 OXR1 PTMA MRPL47 EID1 PEX5L RPL13 TIMP2 SIRPA UHMK1 SCG2 UQCRH RAB3A TMEM160 KIF5A ENC1 PTPRS EHD3 PIK3R1 FXYD6 RGS4 CLSTN1 PRKACB ATP1A3 C19ORF70 THOC7 FAM127A ATP5F1 PFN2 ARL6IP5 ATP5B MAPK1 KCNAB2 ATP6V0B DSTN DMTN WASF1 LSM4 HPRT1 MAST3 KIF1A RAB2A PELI3 IQSEC1 RPL39 ATP2B2 BRINP3 PPM1A NCAM2 NUAK1 NAPB RNF11 NDUFB1 RPL35 SCN3B ATP6V1A BAI2 EIF4G2 GPR26 GLIPR1 ZBTB18 STMN2 FKBP1A IDS MYL12B COPE TCEA2 PPP3CB GDA ATP6V1E1 UCHL1 PJA2 PCBP1 SLC38A1 STMN4 SLC6A17 MT-ND3 IDH3A TMA7 RTN1 TOLLIP PRDX1 MDH1 KCNA1 PNMA2 SUMO2 GAP43 MAP1A CISD1 ATP5J CLTB SERPINI1 MTRNR2L1 STX1A MGST3 MBP GPCPD1 AURKAIP1 TMSB4X CLIP3 NDUFA4 DNAJC5 DNAJB6 PSMB5 SNX10 CPE OPCML TPI1 ATP5H KCNK1 TCEB2 TPPP SOD1 TLN2 SERPINF1 TESPA1 CORO2B JAKMIP1 CLTC ATP6AP1 SLC39A10 PCDH17 TMSB10 UQCRC1 GDI1 ADD2 ACTB AP1S1 CD63 MORF4L1 UQCR10 TSPYL1 HSPE1 PHYHIP TSC22D1 DYNLT3 CD59 ARL2BP SLC24A2 COX5A HNRNPH2 ATP5G2 MAGED1 ATP5J2 RTN3 CADPS2 RPL41 ARF1 RPL3 MAP4 RP11-664H7.2 CADM3 LYNX1 KCNC2 NHP2L1 TPD52 ZCCHC17 CAP2 MANBAL RHBDD2 BEX1 PFKP SNCA ALDOA PSMB3 RPS28 NSF B2M NDUFA13 MTRNR2L6\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "pyramidal neuron" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MT-CO2 MT-CO1 SNAP25 SYT1 SV2B YWHAG MT-ND2 CHN1 CALM2 ACTB CCK MT-ND4 LMO4 RTN4 NPTX1 MT-CYB MAP1B SPARCL1 AES HSP90AA1 ATP6V1A SLC24A2 PJA2 MT-CO3 GPM6A SLC17A7 ZNF385D APP RTN3 NDRG4 MT-ATP6 SYN2 PSAP CLU RTN1 PRKCB NRGN CD99L2 PEA15 ATP2B2 MORF4L2 VPS35 PKM PI4KA MTRNR2L1 RAB3A MFSD6 CALM3 TBR1 ITM2B SYT11 MT-ND3 TMSB10 PPP3CA FIS1 OLFM1 P2RX6P FTH1 PRNP TSC22D1 DYNLL1 GDI1 KIF21A RHBDD2 STMN3 ARL6IP1 YWHAB NBL1 LINGO1 GRIN1 ATP9A VSNL1 FBXL16 PRKCE KCNAB2 ITFG1 MTATP6P1 FXYD6 APLP1 CHGB SCN3B ETV1 CFL1 KLC1 PTGES3 EFHD2 FAIM2 SYN1 PTPRS FTL SSBP3 WFS1 JUND NEFL TCEAL7 GOT2 WDR47 KCNAB1 NPTXR RRAGA ATP2B4 KCNMB4 BEX5 CHL1 NPTN TMEM59L PRKAR1B BTNL9 ZFAND5 UBB PGM2L1 TOMM20 EIF1AX TKT ATP6AP2 DYNLL2 AP2B1 DNAJB9 MAST3 STX1A NEGR1 ACP1 ADAM23 THY1 MMP24-AS1 VAMP2 SCOC SLC9A6 CCT5 NRCAM PRPH2 H2AFZ GRIN2A GDA ARPC4 NWD2 KL UCHL1 YWHAH SLC39A10 SCN1A SNCA SEZ6L2 UROS CPLX1 NECAB1 CLTC SERP2 PRDX3 OPN3 CX3CL1 WASL CTXN1 FKBP8 TSPYL4 SNX10 SNX17 SLC38A1 SCD5 NELL1 TMEM14A CADM2 CLTA CRIM1 TESPA1 IPCEF1 KCNK1 NUDT4 OPRM1 STXBP1 CDKN2D RHEB WBP11 SYNJ1 PTPRT ITM2C SUB1 TAGLN3 PSD3 RNF208 ENC1 MAPK1 SKP1 NCDN VDAC3 ARHGDIA NDUFA11 RPL41 LIMK1 CNTN1 BSN PPP3CB NDFIP1 HDDC2 RPL13 UQCRC1 PSMC3 SLITRK1 RLIM CAMK4 ABHD14A TUBB4A MT-ND1 GUK1 ATP6AP1 NCEH1 GPCPD1 CALM1 CTGF CTSD CD59 PSMD12 OLA1 CAMKK2 VGF SERINC1 DNAJC6 CEND1 RPS6 TMSB4X ATP1A3 ERH GPX4 CKB ACTG1 RPL18A JAKMIP1 COX7C ARL6IP5 NCALD STMN1 TMEM230 PANX1 SLC22A17 APLP2 ATP1B1 NGFRAP1 WBP2 PGK1 ATP1A1 SYT5 CA10 TUBB2A MAL2 NDUFC1 BCAP31 DPYSL2 PVRL1 FABP5 NAPB MYO10 SLC12A5 CLSTN2 RFK SCG2 SULT4A1 NPTX2 HMGCS1 REEP2 CCDC85B THOC7 STK39 CMAS ENO2 HS3ST5 RPL26 PFKP MAP7D2 TMEM155 SLC25A5 MAP2K4 YWHAQ WBSCR17 QDPR NDUFB5 LMBRD2 NELL2 PGAM1 GAPDH MORF4L1 LMO3 ATP6V0C MTRNR2L6 RP11-20I23.1 DNAJC21 TBC1D15\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "pyramidal neuron" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: CHN1 ENC1 MT-CO1 ATP1B1 TMSB4X ITM2B CLU PDP1 MTRNR2L1 FTH1 LYNX1 RGS4 SARAF MAP1B SNAP25 YWHAH TMSB10 CALM3 GPM6A CCK GDI1 CPE VSNL1 PHPT1 SEPW1 GPX4 RAB3A KIF21A SCAMP5 ID2 MT-CO2 TUBA1A SYT1 GAPDH KCNAB2 PGM2L1 GNAQ CNTN1 KLHDC3 CEND1 GSTO1 PPP2R2B C14ORF2 THY1 NRCAM PHYHIP TBCA EIF4A2 TMA7 YWHAB PSMA7 DPP6 SYNGR1 ARPP19 RTN3 SPARCL1 NELL2 STXBP1 HINT1 COX6A1 DPYSL2 CDK5R1 CALM1 APP ATP2B2 NEFH MAST3 PEBP1 HSP90AB1 STMN1 NEUROD6 SMS RPL13A ATP1A1 UROS NDUFB1 KCNC3 RPL32 SERINC1 CHP1 TSPAN7 YWHAG NDRG4 OAZ1 RAB6B TOLLIP ATP1A3 RPL39 AHNAK2 LMO4 PLCB1 C19ORF70 ATXN10 NDUFA5 APLP2 NRAS SYT11 SLC22A17 ENO2 C12ORF49 USMG5 ATP2A2 SYNGR3 TGOLN2 MAP1A NPTXR PSMC3 RPL18A DNAJC5 GMFB KLC2 FTL ASAP1 UCHL1 CDK5R2 TIMP2 CA11 LINGO1 FAM134A SYNPO SLC12A5 AP2M1 SLC17A7 GABRA5 UBC CTSD NRGN NGFRAP1 SNX10 NPTX1 ARF3 ADAMTS1 PRKCE KIAA1045 SQLE DGUOK SYN2 PSMD8 TCEAL2 CERS6 SNN ATP5B OPRM1 OPCML NDUFA13 PSENEN CARTPT PRNP SUMO2 APLP1 NPTN HCN1 EDIL3 MYRIP WASF1 KIF1A SLITRK1 CYCS TPD52 PLD3 NCOA4 DNM3 LRP1B CHGB OLFM1 ARF1 IDS CD59 CAMK2N2 KCNV1 COX7B HSPE1 MAPRE3 CDK5 ROBO2 PIP5K1B CA10 SRP9 SLC38A1 PSMD2 SPTBN1 PAFAH1B2 ATP5J GHITM MSMO1 COA3 EXTL2 ASNA1 QDPR RPL38 YIPF3 TPI1 DNAJC6 MT-CO3 CREG2 DYNLL1 HSP90AA1 SYT13 PPP3CA CHCHD2 BIRC5 JUND SYT4 PPP2CB NAPB CFL2 DNAJA1 BEX1 GRIN2A PSD3 MAPK8IP2 DKK3 ALDOA MYL6 MLLT11 SLC39A10 TMEM70 GOT1 TUBB4B C1ORF52 ATP6V1G1 CRIP2 WARS ETS2 KCNC2 STMN4 CAPZB EID1 SYNJ1 BEX2 FAM19A1 ZNF174 PPP3R1 FBXW11 SLC8A2 TSC22D1 NDUFA4 NAT8L FAM127A DYNC1I1 CCDC68 SNCA ATP5E NUAK1 SPCS2 SERPINF1 MRPL51 RPL13 UBE2N CTXN1 NDUFAF3 VAMP2 CADM3 WBSCR17 CX3CL1 NUTF2 ALDOC ATP6V0C RP11-20I23.1 MTRNR2L6 GTF2H2C_2\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "pyramidal neuron" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MT-CO1 MT-CO3 MT-CO2 MT-ND4 MT-ND3 MT-CYB MT-ATP6 MT-ND1 MT-ND2 MAP1B CHN1 MTRNR2L1 SNAP25 MTRNR2L12 ATP1B1 CALM2 RGS4 RTN3 VSNL1 TUBA1B CALM1 EIF4A2 SYT1 CALM3 RTN1 PRKCB RTN4 NDFIP1 NRGN TMSB4X ARPP19 PNMA2 FTH1 GAPDH GDI1 PRKACB YWHAH TUBA1A YWHAG DYNLL1 NEFL ATP2A2 PSAP GRIN2A MT-ND5 PEX5L MTRNR2L8 CKB INPP5F STMN2 BEX1 KIF1A PCMT1 OAZ1 ZFAND5 PSD3 PEBP1 ALDOC ACTG1 ZBTB18 GPM6A SNRPN ATP9A SNX10 NAPB ATP5I ACTB CTBP1 MTATP6P1 TMX4 THY1 DNAJC6 CFL1 UQCRH TOMM7 YWHAB TSPYL1 MAP1A SEPW1 LANCL1 ATP1A3 EFR3A HMP19 COX6C COX6A1 NGFRAP1 ATP5B PREPL PJA2 ARL6IP1 SULT4A1 SLC17A7 HSP90AA1 MAP4 ATP6V1B2 RPS28 GNAQ EPB41L3 PHYHIPL STMN1 BCL11B ID2 CLU SERF2 MAL2 POMP DPYSL2 NDRG4 CABP1 NDUFA1 NAT8L NHP2L1 SYNGR1 PGAM1 SKP1 SV2B NFIA CEND1 ARHGAP35 CLSTN1 NEFH DCLK1 MT-ND4L TSPAN7 PLD3 NIPA1 HSP90AB1 DSTN PRNP MORF4L1 NGRN MAP2K4 CAP2 NDFIP2 COX7C MTPN PRKAR1B PPIA IDS PITHD1 MAPK1 PDP1 COX6B1 ZNF365 CERS6 UHMK1 RAB6B YWHAZ ISCU COX4I1 CPE PGM2L1 HK1 EIF1AX OXR1 GUCY1B3 BASP1 FAM84A CRYM TCEAL2 UQCR11 RAB3C OLFM1 C14ORF2 PPDPF ENC1 NDUFS5 SUB1 CD99L2 SYT4 ATP5A1 SERINC1 FTL RAB27B NFE2L1 VAMP2 SOD1 DNAJC5 GABARAPL1 FXYD6 FKBP1A HOMER1 PPP3CB NEGR1 TMEM59L CREG2 SSBP3 SARAF TAGLN3 PKM CAMKK2 TUBB4A MTCH1 SRP14 RNF11 MTRNR2L6 DNAJB6 RP11-20I23.1 ATP6V0C IPCEF1 APLP2 NUDT21 CAPZB SPTBN1 KLC1 APP ATP6V0B USMG5 STXBP1 FAM127A PPP2R2C NAP1L5 CDK5R1 EID1 RP11-195F19.5 UQCRB CAMK2G TRIM37 SCN1B CLSTN2 SNAP91 ARL8B RAPGEF5 PPP2CB AP1S1 MGST3 ATP5G3 OXCT1 ATP5E AP2M1 NDUFA4 LGI3 SLC7A1 RAB11A GNB1 AES RRAGA RAB3A CAPZA2 ATP6V0E2 EPDR1 SYNJ1 CDKN2D DIRAS1 NEFM CDC42SE2 NUDT4 SERINC3 CDH13 NECAB1 SUMO2 BRK1 LYNX1 LMO4 HINT1 CHCHD2 DIRAS2 TESPA1 SLC12A5 GDA EIF4G2 RPS15 RAB2A SPARCL1 GPX4 NBL1 CADM2 CHMP4B SELT TMSB10 CDR2L SLC9A6 SLC38A1 RPL8 SMS MPPED1 KCNA2 DLC1 CYFIP2 CDS1 PGK1 WFS1 CPLX1 PPP2R1A RAB6A CNR1 MAPK8IP2 GAP43 NRAS CPLX2 SPRYD3 MT3 MORF4L2 PTPRN VDAC1 REEP5 RCAN2 CNTNAP5 ATP2B4 SMIM13 BEX2 PDE1A EEF1A2 BSCL2 RPL26L1 DLD CHGB C3ORF80 RASGRP1 TBCB PSMB5 KCNA1 PRDX1 IGSF21 LHFP SERPINE2 EIF1 RHEB SCN1A NAPA CDK14 SCAMP5 GOT1 C1ORF52 CHL1 MZT1 OPCML ATP5G1 ENO2 WBP2 TSPYL4 UBE2M LGALS1 TBCA SIRPA RPL3 SNCB PNMAL2 PSMC5 APLP1 UBB ATP6AP2 VSTM2L COX7B TRAPPC1 AP2B1 GABRA1 SYT11 HPRT1 FAM174A RPH3A DKK3 RPS26 ELAVL4 BSG RLIM BEX4 CTXN1 EPHA6 PRKAR1A RBX1 AZIN1 PFN2 INA FAT3 PPM1A SH3BGRL3 CLTC LRP1B SERPINI1 TEX2 PRDX3 POU3F1 ADAM23 PCP4 JUND JAKMIP1 LAMTOR5 SPHKAP ELMO1 WASL TOMM20 SLC22A17 UCHL1 RANBP1 ARL8A NUAK1 PSMD12 ETV5 PIK3R1 ATP6V1A MLLT11 SYT2 CAPNS1 AKAP12 TOLLIP HRH3 EGR3 WSB2 MRPS21 RPL41 RPL31 GRINA ATP2B2 COX5B VPS35 EPS15 MLF2 PPP3R1 SLC25A6 RHBDD2 RPL37A KIF5A NSF MFN2 CCDC184 SLC24A2 NMNAT2 MRFAP1 NDUFS6 NTN4 UBE2QL1 DGUOK NDUFA2 TSC22D1 LMO3 SCN2B DNAJA1 PINK1 ARF1 PCBP1 VDAC3 PTGES3 PCP4L1 SEZ6L2 CCDC85B ATP6V1C1 NDUFA5 EHD3 ACTR1A CADM3 NCOA4 TMEM155 LPPR4 MIEN1 MAP2K1 CACNB1 DYNLT3 ACOT7 RAD23B DCTN1 TMTC1 KCNMB4 ATP1A1 ASAP1 TMEM14A ATP5J2 ATOX1 SYN2 B3GNT1 PPP2R4 ATRN CLIP3 CDH22 FAM84B PRKCE PSMD8 CLTA WASF1 MDH1 PPP1CB GABARAP ALDOA MIF RPL15 SNRPE FGF12 SLC6A17 NCAM2 ADD2 CLDND2 POLR2M MAGEH1 TCEB1 FEZF2 GSTP1 PRUNE2 SRP9 KIF3C TSC22D4 HS3ST2 RAB11FIP5 RNF208 HSPA4 FIBP FXYD7 RFK HSPA8 NDUFB1 UBE2N MT1X KCNF1 C4ORF3 CCDC124 FARSA NCBP2-AS2 ZNF804A PODXL STOX1 VAT1L NAP1L3 INSIG1 RPS5 DGKG WBSCR17 OLA1 SPOCK1 C18ORF32 VGF HMGCR TXNDC17 PSMC3 SNRNP25 FAM131B VAMP1 MPC2 GABPB1 SYNGR3 IMMP1L SYN1 PIN1 ATP6V1E1 CDC37 NDUFC2 NGEF H2AFZ PRELID1 LINC00116 NPTN RPL32 UBE2V2 PCSK1N SSTR2 TPD52 BAD IDH3A NOV ATP6AP1 HCN1 NDUFB2 UBL5 KIF21A UBQLN2 ITGA6 UQCRQ TXN PHYHIP PAQR9 MANBAL LINGO1 ARHGDIG ARF3 HMGCS1 RPS12 CORO2B PITPNA RAB5C SLC25A4 TMEM70 NEUROD2 ATP5J NDUFB10 CBX6 SEZ6L STUB1 UQCR10 DEXI PGRMC1 ELFN1 SLIT1 ANAPC11 BAALC KIFAP3 NRCAM RAP1GAP2 WDR47 PSMB3 NARS ENO1 MRPL37 ATPAF1 ARPC5L PPARGC1A TMEM35 HSPB8 GMFB C14ORF132 MYZAP DMTN KLHDC3 PAFAH1B2 DDN IGFBP2 LDHB CD59 RPL26 ATP5F1 PSMD2 PTK2B PDE1C KAL1 FKBP8 KCNIP1 MMP24-AS1 TOMM34 SDCBP SLC7A5 ANXA7 TMEM230 MTND1P23 CTNND2 DCTPP1 ISOC1 NDUFA13 SULF2 PPP3CA MAP1LC3B SELM STMN4 ATP6V1F COA3 SPARC PTMA BSN SRD5A1 TPPP TCEAL7 CDK17 CA8 FAIM2 ADRA1D PIP5K1B SYNPO GHITM ACOT4 PAM ARL2BP TCEAL3 RPS2 SUMO1 NRSN2 TENM1 SLC25A22 NRN1 DCTN3 DYNLL2 STK39 NR4A1 PPP2R2B NUTF2 ANXA6 FAM43A CYCS TUSC2 NDUFAB1 HDLBP PFN1 ASNA1 EGR1 ELAVL2 ARHGDIA COX8A RPS3A ASPDH GSTO1 DYNC1I1 BCAP31 TUBB3 CA11 CCDC115 NDUFB8 UBA52 GSK3A PACSIN1 GFRA2 PFKP ANO3 TMOD2 NDUFA11 CLPTM1 KRAS HS6ST3 SLITRK1 PPTC7 RPL11 CLEC2L PRDX5 RPL10A BNIP3 ARL4C CISD1 COX5A CNTN1 ATXN10 KITLG DHCR24 HSPBP1 RPL18A SMYD2 GPCPD1 SRM TUBB4B FSCN1 NAA38 BHLHE40 C12ORF49 GRAMD3 SEC61G C11ORF96 ENSA COPE SLCO2B1 LDOC1 STXBP6 REEP2 HBQ1 C16ORF13 GSKIP ATP5G2 MYL12B CX3CL1 SNCA SUCLA2 RAN ETS2 NDUFC1 RAB7A SUMO3 NCDN BAI2 NCEH1 PVRL1 SNN PEG10 CCDC25 RHOB LYPD1 BTBD10 PPP2CA CDK5R2 MAPRE2 RPL35 FNDC4 MRPL20 PLCB1 GIMAP4 RSL24D1 UBE2D2 PAK1 OAT BCL6 COX17 SMAP2 CMPK1 SNX17 RAP2A C8ORF48 EIF1B FBXL16 CYB5R3 ROBO2 CHST8 RASGRF1 RPL23A SMIM12 C11ORF31 BAG4 GOT2 GPR158 SCN4B RNF181 NME1 RPS10 BCAS2 CHP1 TMA7 OCIAD1 TMEM141 CHMP5 RPL38 NDUFAF3 CAMK2D DDAH1 CSDE1 LINC00086 SPOCK2 NDRG3 DPP6 GABARAPL2 LMBR1 PNMA1 SPCS2 MAGED1 MDH2 PALD1 IQSEC1 ETFB QDPR ATP6V1G2 ARF5 RPL17-C18ORF32 RPL13 RAB3B RNASEK-C17ORF49 EPHB6 RPL17 SYTL2 C20ORF24 B2M PCDHAC1 PCDHA4 RPL21 PCDHA9 PCDHA10\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "pyramidal neuron" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: CHN1 MT-CO1 MT-CO2 PRNP MT-ND4 MT-ATP6 MT-CO3 SYNGR1 MT-ND3 SNAP25 SPARCL1 MTRNR2L12 FXYD6 CALM2 OLFM1 GUK1 ARPP19 RAB3C FAIM2 ATP9A EIF4A2 ATP1A1 NDUFB1 PDP1 RTN1 RTN3 PPP3CA TUBA1B STMN1 LMO4 YWHAB SYN2 ATP2B2 CDK5R1 OXR1 SERINC3 IDS SV2B TOLLIP TSC22D1 POMP VAMP2 PNMA2 RGS4 TSPYL1 HSPA8 KIF3C MAP4 ATP6V0D1 PHYHIP PJA2 AZIN1 ZBTB18 CCK EPB41L3 TSPAN7 PCMT1 RAPGEF5 YWHAG BEX1 MAP1B COPE SERPINI1 PPP2R4 CYB5R3 FAM127A CFL1 DCLK1 RPL23A SYNPO SLC22A17 COX7A2 AP3S1 GPR158 AP2B1 SKP1 PAFAH1B2 CPE BNIP3 RPL35 GLRA3 TBCB MTRNR2L8 MORF4L1 KCNV1 RPL37A DMKN ATP5G3 CLU NDFIP1 DYNLL2 DPYSL2 CAMK2G PRPS1 HSP90AB1 FNDC4 SCD5 RP11-195F19.5 EIF1AX SYT3 CLPTM1 DMTN TMEM151A NDRG4 GABARAPL1 SEPW1 BCAT1 NCEH1 ELAVL2 PPTC7 SLC17A7 TMSB10 CHCHD2 FAM3C PIK3R1 PPIA SLC39A10 UBA52 TPD52 RPL38 DYNLL1 TPI1 SRP14 NDUFB7 STXBP1 NRGN TMSB4X NDFIP2 ELAVL4 SIRPA SNCA TXNDC17 AP2M1 JOSD2 CALM3 NGEF CACNG3 NDUFA4 PI4KA KIF1A MORF4L2 SYT13 NHP2L1 ARL6IP1 LAMTOR2 SARAF KLHDC3 SLC8A2 MRPL55 NDUFA13 TMEM35 PET100 RNF11 CHP1 PTGES3 UQCR10 FTL CBLN4 MT-CYB YWHAZ CLTC GHITM SLC30A3 MT-ND2 SYT17 RPL26 CNRIP1 BEX4 SELT PSMC5 ITM2B SERINC1 BAI2 MFSD6 C14ORF2 GPX3 RAB3A ATP5I PPP2R1A SUCLA2 NDUFV1 CLSTN1 OCIAD1 DPP6 MAP1A COX6C SYT1 COX7A1 LMBRD2 EXTL2 GAPDH WBP11 GUCY1B3 SLC25A4 NDUFA1 HNRNPH2 DHCR24 ASAP1 CNTN1 AES PREPL UCHL1 POLR2K GABRA1 BSG HK1 ETS2 NAPB C6ORF1 RHOB TUBB4A NGRN WSB2 PLD3 GPX4 TIMP2 RAN SPOCK2 COX4I1 MTCH1 GRIN2A AP1S1 NEFM BEX2 UQCRQ PACSIN1 CAMK2D KCNC3 TM2D3 ARL6IP5 GNAQ NRCAM B3GNT1 RPS28 ADRA1D ATP5B ARL8B NMNAT2 RPH3A NDUFA5 ATP5G1 NDUFB5 DYNC1I1 SNRPN PPP2CA RAP1GAP2 HINT1 TWIST1 ARF1 ATP2A2 PSAP WASF1 NSF BCAP31 SNX3 EGR3 VGF CHMP4B SLC12A5 NAT8L MAPRE3 DDAH1 RASGRF2 FGF12 TUBA1A PRKCE FARSA RRM2B AK5 RTN4 DGUOK YWHAH MDH1 MYEOV2 MT3 KCNC2 ATP1B1 IFI6 TOMM20 S100A6 APLP1 NGFRAP1 STX1B ATP5J ISCU ATP5A1 VPS35 ATP6V0C GABARAP RP11-20I23.1 PCDHGA5 PCDHGA10 PCDHGA6 PCDHAC1 PCDHA4 PCDHA9 PCDHA10\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "pyramidal neuron" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MTRNR2L1 CLU RTN1 SPARCL1 SNAP25 MT-CO1 SYT1 CALM2 STMN1 NEFH MT-CO3 ATP1B1 CHN1 PKM TSPAN7 ATP1A1 CALM3 MAP1B PSAP PHYHIP ENO2 KLC1 NRGN YWHAH SPOCK1 BASP1 ENC1 ATP2B2 MTRNR2L12 MTRNR2L8 ARL6IP1 PFN2 STMN2 SLC12A5 SARAF ATP6V1A PEBP1 RPS15 NGFRAP1 TOMM20 RAB6A SERINC3 TUBA1B SNCG RTN4 PJA2 SLC22A17 MT-ATP6 LMO4 YWHAB HINT1 MT-CYB CADM2 PIK3R1 CHCHD2 FAIM2 PPP3CA MT-ND3 TMX4 CD63 FKBP4 PGRMC1 TAGLN3 NDN NAP1L5 SNRPN NDRG3 ANXA6 MORF4L1 AKAP12 PLCB1 PFKP BEX1 COPS7A NDUFA11 HPRT1 NAPB KIAA1045 CLSTN1 HTR2A OLFM1 FTH1 C4ORF3 NARS ARPP19 PTPRS RHEB FKBP1A NEFL ATP5G3 LGI3 DKK3 SIRPA ALDH5A1 RORB ATP6V1B2 ATP6V1F LYNX1 RGS4 HSP90AA1 DYNLT3 ELAVL2 ARL8B CYFIP2 LMBRD2 MTRNR2L6 MT-CO2 RPL31 TOLLIP YAF2 SULT4A1 RCAN2 SV2B SYN2 VPS35 TMSB10 RPH3A SMIM13 CTSD CDK5R2 YWHAG PPP2CA CLTC OCIAD1 RTN3 COX4I1 ATP1A3 CADM3 PREPL PLD3 POMP DCLK1 NDUFA4 MTATP6P1 KCNAB2 MYL12B VSNL1 TUBB3 ALDOA MYL6B SKP1 MAP1LC3B FXYD6 CERS6 TXN TUBB2A SNCA APP MAPK1 SEC61G RPL36A NUAK1 PSMC5 GPM6A SLC7A1 COA3 TMSB4XP4 ALDOC BRK1 STXBP1 NPTXR SCN1A PRUNE2 MAP1A TRAPPC1 MED10 ENO1 MT-ND5 SLIT1 SLC9A6 STMN3 CSDE1 SNX10 MYL6 ATP6AP2 BAI2 KIFAP3 UQCR11 SERPINE2 FUNDC1 INA SYT4 APLP1 ATP5A1 AZIN1 TESPA1 SNX3 ARF1 UBB NAP1L2 LINC00116 CABP1 CKB MFN2 ASAP1 TM2D3 GNG2 PITPNA MTX3 AP3S1 SRP14 PPP2R4 UBE2M TNNT2 GNAQ TSPYL5 ENSA LMO3 CADPS2 CALM1 GAPDH TMEM14A EIF4A2 RPL13A TMEM141 WDR47 CNIH3 RHOA ETV1 PHYHIPL STX1A OLA1 CHGB RPL37A RAB7A RAB3IP NAT8L BEX2 TMEM230 NDUFA8 HMGCS1 MT-ND4 CNTN6 AK5 ATP6AP1 SYT13 TGOLN2 ARL6IP5 RNASEK-C17ORF49 PSMB5 EIF1 SH3RF1 PRKAR1A RPL26 RHBDD2 C12ORF49 CST3 RHOB ARF3 PSD3 SYNGR3 EFHD2 HSP90AB1 RPS2 OXR1 DLD ARHGDIG SH3BGRL2 TMA7 GAP43 COPG1 SLC39A10 NELL2 THY1 PPP2R2B NCEH1 WBP2 DPP4 ARPC5L HAPLN4 DNAJA1 TMSB4X DYNLL1 RPL41 TOMM7 ATP5C1 ISCA1 KIF21A ELMO1 ITM2B PIP4K2A C6ORF1 SOD1 NRCAM ITM2C PRNP YWHAZ NNAT WSB2 TMEM155 PRDX5 ATP5G1 SLC25A5 GHITM SCN2B CCK NDFIP1 BSG PACSIN1 SLC17A7 CMPK1 HN1 ACTB CLEC2L NDUFB7 ECM1 UQCRH VAMP2 NDRG4 UBC CAPZA2 IPCEF1 TMEM35 PRKACB CPE SCN3B ATP5E ATP5B CNTN1 CAMK2G MYEOV2 APLP2 BAALC PNMA2 UQCRQ NCALD CAPNS1 CAMKK2 C9ORF24 REEP5 CHMP4B RPL21 S100A6 NDUFA1 NELL1 EDIL3 TSPYL4 EPHB6 B3GNT1 CDS1 SERPINI1 SYT2 TUBA1A NPTX1 REPS2 TSC22D1 CCT5 NECAB1 PTK2B SDCBP KCNC2 SPTBN1 SEPW1 ATP6V1G1 PSMC1 TPPP EIF5A2 KCNA2 ATP5O PCSK1N LDHB PPP2R1A CA11 RPL15 OSGEPL1 RAB4A SKAP2 DIRAS2 TPI1 FJX1 KIF5A NDUFB11 SLC38A1 RAB3A SNRNP25 SEZ6L2 PITHD1 PNMA1 AURKAIP1 PCBP1 BSN ATP9A KIF1A ATP2A2 WBSCR17 SERINC1 CTBP1 CLIP2 PTMA MAGED1 PIN1 TBCB ASPDH OAZ1 PCMT1 SPOCK3 EIF1B NRIP3 MAL2 COMMD6 KLF10 MTPN TOMM34 SYNJ1 MDH1 FABP5 ISCU GTF3A CYB5R3 TEX2 TCEAL2 BSCL2 GABARAP IDS NSF ATP6V0C RP11-20I23.1 ATP6V1G2\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "pyramidal neuron" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MT-CO1 MT-CO2 SNAP25 ENC1 GAP43 ARPP19 CALM2 SYT1 RTN1 GPM6A CCK MT-ND1 CHN1 MT-CO3 KLC1 EIF4A2 MTPN MT-ND4 OLFM1 STXBP1 RTN3 ENO2 HOPX SNRPN RTN4 GABRA1 PRKACB GAPDH ATP1B1 DNAJC6 PRKCE PGAM1 NGFRAP1 WASF1 VSNL1 TMSB4X PKM NCALD MT-CYB CLTC AK5 NCDN PDP1 PIK3R1 PITHD1 CREG2 SLC39A10 PJA2 CLSTN1 TMSB10 NDUFS5 SNX10 NEGR1 UQCRH SEPW1 TUBA1B GDI1 YWHAG RP11-20I23.1 ATP6V0C PPP2R4 TMEM130 PPIA SPRYD3 SCOC APP SPARCL1 TSC22D1 TUBB2A CALM1 PRELID1 SNCA PPP2CA APLP2 SYNGR1 SOD1 PSAP ATP1A1 ITM2C TPI1 RAB6B PAFAH1B2 COX4I1 LMO4 STMN3 SARAF KIF5A SLC17A7 HMP19 RABAC1 PPP1CB HSPA8 NDUFA11 FAM19A1 NAT8L PI4KA ATP2B2 PEBP1 RPL13 MT-ND2 MTRNR2L8 MAP1A C14ORF2 FAIM2 THY1 LMO3 MTRNR2L12 UCHL1 SNAP91 BSCL2 SIRPA MT-ND3 B3GNT1 EIF1 CHL1 CA11 RRAGA TUBB4A CBX6 ATP5G2 CKB TMEM35 SYT11 SEZ6L2 EIF5A2 HOMER1 ACOT7 PCBP1 STMN1 ACTB TBCA RPL26 CYCS CDK5R1 SYNJ1 NDUFB8 PPP3CA PREPL SLIT1 EPHA6 CNTN1 TRIM37 CLU NRGN IDS JUNB PTK2B GNG2 MIR6723 SNX3 MYRIP SLC9A6 D4S234E CRIP2 CD59 TUBA4A NSF C2ORF74 SUCLA2 RAD23B WBP11 DYNLT3 INA YWHAB RELL2 SNCB HTR2A RBX1 RPL15 CYB5R3 STMN2 PSMD8 DKK3 CPE TOLLIP MTRNR2L1 NPTXR DCLK1 FKBP8 NDRG4 PSMC5 IPCEF1 FAM219A CTNND2 PINK1 HMGCR SV2B RAB6A GNB1 UBE2F BRK1 ATP6V1A GOT1 UBE2N NCAM2 RCAN2 NDFIP1 EID1 MAP4 MTRNR2L6 RHEB EXTL2 BSN FSCN1 RPL41 GSK3A RPL6 COL6A1 NARS RAB3A VSTM2L FNDC4 PNMA2 RAB7A UBC UBE2D2 RPL12 BEX1 SPTBN1 TMEM155 ATP2A2 UBE2E3 FAM19A2 SCN1A WSB2 PPP3CB GRIN1 SUB1 PITPNA TOMM34 OLA1 DCTN1 ATP6V1B2 RPL38 CDK17 RPS15 DNAJA1 CHCHD2 ATP5G3 RPL13A POLR2L GABARAPL2 CIAPIN1 FAM134A DSTN SUMO2 PLD3 GLRA3 RPS19BP1 PRKAR1B TSPAN33 OXR1 KRAS TUBA1A ATP2B4 PPDPF FOXP2 DPP6 COL5A3 SEC61G SSTR1 TOMM20 RSL24D1 HSP90AA1 TSPYL5 VDAC3 EPS15 GABARAP RGS4 CAMKK2 KCNV1 MTATP6P1 NAA38 RAB5C GNAQ SYN2 EFR3A TLE4 HNRNPH2 BHLHE40 TRAPPC1 IQSEC1 YWHAH IFI6 RNF11 PRNP OAT HS6ST3 ZFAND5 NDUFB10 SCG2 GFAP C19ORF53 PSD3 FGF12 ANAPC11 SYNPO PPP2R1A ABHD8 SLC25A6 PTMA NECAB1 SYT4 MYL6 KCNH5 IDI1 RPL18A ARL6IP1 LMBRD2 NDFIP2 CACNG3 CAP2 ATRN ACAT2 FAM84A GUCY1B3 SYT5 PTPRN2 C1ORF115 CADM2 TM2D3 PNMA1 ALDOC DMTN ENO1 YWHAZ DIRAS2 CD99L2 TBCB CALM3 HSPE1 TESPA1 NEFL FRZB PRKCB SLC22A17 TPT1 COPS8 HK1 NDUFA5 FBXO2 CDH13 RAB2A PFDN4 MAP2K4 SERPINI1 COX5A PTPRT SERINC1 ATP6V1E1 PIN1 LANCL1 LDOC1L PTGDS GHITM PAK1 UBE2V2 KLF10 OPN3 FABP3 TIMP2 SLC39A3 SMS ATP6V0B VDAC1 SCN3B CAMK2G NELL2 BNIP3 MT-ATP6 CNTNAP5 TERF2IP LDOC1 PPM1A KIF1A NHP2L1 YWHAQ NDUFAB1 GDA MAP1B MAPRE2 RAB11A SLC12A5 ARPC4 EDIL3 VSTM2A PGRMC1 ATP6V1G2 C18ORF32 ALDOA TUBB RPL21 RPL17-C18ORF32 AC244489.1 PCDHGA10 PCDHGA6 PCDHGA5\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "pyramidal neuron" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MT-CO1 MT-CO2 MT-ND4 MT-CO3 SNAP25 MT-ATP6 ATP1B1 CALM2 MAP1B MT-ND3 MT-CYB CALM1 MTATP6P1 MT-ND2 CCK CHN1 TUBA1B PPP3CA RTN3 MT-ND1 TMSB4X RTN1 SYT1 ACTB GPM6A FTH1 RTN4 STMN2 CLSTN1 THY1 SPARCL1 NDFIP1 ENC1 ENO2 PRNP HSP90AA1 ITM2B SERPINI1 EIF4A2 ATP6V1B2 VSNL1 YWHAH SNX10 PREPL LMO4 NDUFA4 SNCA PRKCB SLC39A10 NUDT4 IDS PPP2R2B STXBP1 CLU BASP1 ZBTB18 PJA2 RGS4 GAPDH NDRG4 TMSB10 TMEM230 OLFM1 SERINC1 CADM2 TPI1 UCHL1 MAP1A NEFL CYFIP2 CAMK4 ARL6IP1 CALM3 MAPK1 NAT8L PRKAR1B PPP3CB ATP1A1 FAIM2 KLC1 C1ORF115 GNAQ PLD3 DYNLL1 CLTC ARPP19 NRGN ATP2B2 RPL13A SLC17A7 GPX4 FKBP1A RAB3C TRIM37 LDHB ATP5B NIPA1 CPE RPL15 CNTN1 ARF1 KIF1A APP HSP90AB1 NCDN ARF3 PFN2 PTK2B NRN1 MTPN ATP9A ATP5A1 PSD3 MTRNR2L1 TMEM130 SOD1 PGM2L1 RPL8 OAZ1 DNM3 CHL1 STMN3 TUBB2A ATP6V1E1 FSCN1 OXR1 TSPYL5 APLP1 RAB2A TMA7 ATP5E PLCB1 PEBP1 VPS35 PCMT1 NCALD CDK14 TUBA1A ATP6V1C1 SLC24A2 TPD52 VDAC3 TSPYL1 KCNAB2 RAB6B PGAM1 NECAB1 TUBB4A RPL21 SNCB APBB1 UQCRH PRKACB BEX4 ATP6AP2 TAGLN3 SNN ARL8B SYT4 ELAVL2 SUB1 AP2M1 TGOLN2 PIK3R1 SARAF STMN1 PEX5L SLC9A6 NDUFA1 SYT11 RPS15 HSPA4 DYNC1I1 SULT4A1 NSF TMOD2 SPTBN1 CTNND2 DNAJC6 PPP2CA C14ORF132 AK5 ACLY ATP6V1G1 DYNLL2 KIFAP3 MAP2K4 CA11 ATP1A3 UQCR11 CABP1 BAD CERS6 YWHAG SCN1A JUND CAMK2D RPS27A SYN1 RPL18A KIF5A ATP5C1 SEZ6L NPTXR PHYHIP VDAC1 C1ORF56 ARF5 LINC00086 NAPA MTCH1 TUBA4A CDH13 SNX3 TMEM59L TEX2 FAM84A KCNA2 NCEH1 UQCRC2 DPYSL2 RPS4X GPR158 EPB41L3 SH3GL2 C14ORF2 COX6C TESPA1 AES RP11-20I23.1 CAP2 TCEAL2 SH3BGRL2 HAPLN4 GABARAPL1 FAM198B SPOCK1 UBE2QL1 HINT1 TPGS2 PAFAH1B2 GABARAPL2 RPL35 ATP6V0E2 SRP14 OCIAD1 USMG5 EDIL3 CACNB1 RPL13 UBE2M SLC12A5 BEX1 COPRS GUK1 UHMK1 PITHD1 NAP1L2 CAPNS1 HMGCR PSMB7 IPCEF1 GMFB PI4KA NARS CBX6 GRINA NDUFS5 STMN4 ISG15 MZT2B SLC17A6 RPS28 MAP4 STRAP ATP6V0C ATP6V1A POMP KCNA1 WSB2 SYNJ1 NGRN NKIRAS1 CPLX2 TPRG1L VAMP2 NFE2L1 PNKD ZFAND5 SLC22A17 LYNX1 CMPK1 CCDC184 EXTL2 TSPAN7 FAT3 NTNG1 CD99L2 MLLT11 NEFM PPIA SNAP91 LAGE3 RHEB FXYD7 NDUFA2 BSG C9ORF16 ARHGDIG APOE LGALS1 TMX4 RABAC1 SEPW1 MTRNR2L6 UROD CFL2 CYP26B1 DHCR24 CDC42SE2 WBP2 DCTN1 C6ORF1 CTNNB1 HSPA8 PTPRN2 RPL39 KLK7 PBXIP1 FKBP8 SLC7A8 TSPYL4 MTND1P23 MYO16 STK39 BEX5 WDR47 TRIM35 PPP2R1A GFRA2 UQCRB CDS1 PSAP MRPS21 MZT1 RPL32 SDHAF1 RNF208 SMIM13 NEGR1 DPP6 VGF NHP2L1 ABHD14A SELT STX1A GNB1 RFK MT-ND4L AQP4 SMS BNIP3 COX6B1 CHCHD2 DIRAS2 EIF1AX GABARAP NPTN ACTR6 ATP2A2 GADD45GIP1 C16ORF13 ATPAF1 EID1 YWHAB PRSS3 CLIP3 MORF4L1 MAP1LC3B RPL23A MAL2 FAM219A RCAN2 GHITM RPS2 POLR2I SCAMP5 IGFBP2 NMNAT2 SUMO3 RPL17 ITFG1 OAT NDRG3 TRIM47 MYL6 CCDC85B MRAS DBNDD1 CRIP2 TENM3 DMTN TERF2IP COX7C NRCAM HMGCS1 LL0XNC01-16G2.1 C1QBP HMP19 YWHAZ RPL11 NPTX1 LIMK1 GDI1 FIBP TSC22D1 LGI3 SRD5A1 RNASEK-C17ORF49 RORB POLR2M CTSD COX5B SV2B SLC25A22 MAST3 SYNPO MAP1LC3A GRIN2A KCNMB4 BLOC1S1 EFR3A MPC2 RAB6A EIF1B MTRNR2L12 RPS6 MTX3 WBSCR17 NDUFA11 PRPS1 HCN1 IQSEC1 SYT3 PDE1A RNF11 CBLN4 CNRIP1 AZIN1 UBL5 RRM2B RIT2 INA PPM1A ARL6IP5 CLSTN2 TOX2 DLD SUMO2 PRELID1 COX6A1 TMEM141 POLR2K TRIM36 CFL1 AP3S1 ETFB SCN3B DCC CYCS PRKAR1A CLTA PMP2 NDUFAF3 DPY19L1 PAM FXYD6 SLC38A1 MFN2 MLF2 AURKAIP1 ATRN AP1S1 NELL2 CREG2 DKK3 RRAGA DCLK1 UQCR10 SPOCK2 OPA1 BRK1 CA10 SYNGR1 KCNV1 RPL31 C20ORF24 TBR1 HPRT1 ANXA6 HIGD1A MAP7D2 SNRPN PKM BAI2 ADAM23 PSMA7 MORF4L2 DDN CARTPT TOMM20 ACTG1 RPL36A RAP1GDS1 UBE2N DDAH1 ALDOA SLC8A2 MKX RANBP1 REEP2 ERH PRDX2 TBCA NDUFB2 RPL6 TCEB1 ASAP2 DNAJC5 CDHR1 MB21D2 DIRAS1 MT-ND5 KCNH5 PVRL1 SLC6A17 RTBDN ALDOC TPPP MDH1 RPL17-C18ORF32 TXN SYN2 ADIRF CDK17 KIF3C PPP2R2C OPCML OST4 SERINC3 CKB ASAP1 MFGE8 NREP LDOC1 MMD LDOC1L ACTR10 SH3BGRL3 ATG101 PNMA2 WASF1 PNMA1 PROCA1 LDB2 ATP6V0D1 CRKL ATP6AP1 HN1 ATP5O SLC25A5 CYC1 IDH3A TCEAL3 S100A6 CSDE1 SEZ6L2 BEX2 FGF12 ANAPC11 SNCG REEP5 NAP1L3 ATP5H HRASLS5 ITM2C HS6ST2 EPDR1 DNAJA1 RBX1 TM6SF1 MRPS28 NGB SYT13 MAGED1 FAM127A PPP2CB DEXI MSMO1 SPRN PSMD8 ID2 MDH2 LAMTOR5 CAB39 TMEM155 TCEB2 BSCL2 VSTM2L CALB1 BHLHE40 GNG3 TMEM150C KIAA1045 RPL26 ADD2 UBE2E3 GOT2 TMEM14A FAM163B SSTR2 YWHAQ TUBB4B NAPB KIF21A UBA52 RHOB SLC25A6 MT3 MPPED1 PTPRS SLITRK1 ATP5G2 EGR3 FAM96B HEY1 MIF MBOAT7 NDUFA13 SERF2 RPL13P5 SERPINA3 PSMB3 ATP6V1G2 HNRNPA1P40 PCDHGA5 PCDHGA10 PCDHGA6\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "pyramidal neuron" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MT-CO1 MT-CO3 MAP1B MT-CO2 MT-ND4 MT-ND3 SYT1 MT-CYB ACTB RTN4 CHN1 UCHL1 TUBA1B MT-ND1 SNAP25 RTN3 TMSB10 HSP90AA1 SLC17A7 CADM2 CALM2 MT-ATP6 RPL41 FXYD6 SYN2 MT-ND2 EGFL7 C14ORF2 KIF21A GAPDH ARL6IP1 MTRNR2L1 NGFRAP1 SEPW1 DKK3 GDI1 CCK KIF3C CLSTN2 SYNGR1 UBC COX5B TUBB4A LANCL1 CTSD MTCH1 GUK1 COX7A1 RPL26 CPE PPP3CB UBB MAP1LC3A MT-ND5 RPS15 GABRA1 YWHAZ SEC61G HSP90AB1 TBR1 C7ORF50 CLTA RGS4 ATP1B1 PRKACB PRKCB FAIM2 PLCB1 YWHAG CD59 PGRMC1 COMMD6 TMSB4X MLF2 KCNK1 DCTN1 PPIA NRGN ENC1 NDUFA13 NAA38 PRNP PTPRN TMEM59L ATP5G2 NCDN SCOC PPP3CA ELAVL4 IDS AES DYNLT3 NUAK1 SSTR2 FAM3C THY1 OXR1 GPM6A PIK3R1 CTNNA2 RAB3C NDRG4 ATP6V0B SCN1B YWHAB CTBP1 CSDE1 SLC6A17 CALM3 TOMM7 NUTF2 SLC24A2 ENO2 SCN3B MLLT11 SYT4 FTH1 NHP2L1 BEX1 NAPB HS3ST2 TUBB CEND1 ACTG1 ATP2A2 SLC25A22 PSMC5 IQSEC1 RPL12 NEFL CAB39 CADPS2 LYNX1 VDAC1 MANBAL PHB MAL2 MGST3 BEX2 CLU PACSIN1 ATP5B ARL8A VSNL1 OXCT1 ATP5I PNMAL2 TMEM35 ARL8B HBA1 STK39 FAM163B RORB SULT4A1 SLC9A6 RTN1 PITPNA MRAS TERF2IP TRIM37 AP2S1 UROS AK5 DSTN OPA1 CDS1 EIF4G2 TUBB2A NRSN2 NPTXR ATP6V1B2 CPLX2 ATP6V1A RAP2A UQCRFS1 ARF1 CREG2 APLP2 PRDX1 KCNC2 ABHD14A PRDX5 COX6C MAP4 SARAF GNG2 BHLHE40 CERS6 PEBP1 ASAP1 DPYSL2 CDKN2D STX1A C12ORF57 UQCRH PFKP NDUFAB1 PPDPF FKBP8 PSAP PSMD8 ARL2BP S100A6 HK1 OAZ1 MYL6 COX14 NRN1 PLS3 NDUFA4 MAPK1 NEUROD2 ALDOA RPL13A LINC00087 SOD1 NDUFB11 PHYHIPL CSRP1 SNRPN NECAB1 MTRNR2L12 UQCR10 AP2B1 RAP1GAP2 CD99L2 PTMA RPS28 NDUFS6 CAMK2G VAMP2 COX6A1 PSMA7 STMN2 ANXA6 RFK TCEB2 PTGES3 AKR1C2 SH3GL2 STK24 GRIN2A CALM1 IGSF21 ACTR6 NPTN RPH3A RAB3A TAGLN3 PSMC3 SLC25A5 C9ORF16 HINT1 FLOT2 ATPAF1 PPA1 SLC22A17 ANAPC11 LMO3 DNAJC5 ELAVL2 AZIN1 BSG BRK1 LINC00086 SERINC1 BASP1 WBSCR17 GNAQ CLSTN1 CDK5 AP3S1 HSPE1 HEY1 PIN1 MAP1LC3B PCDH17 BCAP31 PREPL YWHAH EFHD2 GNB1 SLC1A2 PJA2 HTR2A STXBP1 PSMB7 SH3RF1 SNAP91 TSPYL1 SERF2 RAB6B ATP5F1 NKIRAS1 ARF3 SUMO3 EIF1 KIF5A PITHD1 PDE1A RHBDD2 SV2B SPOCK1 NHP2 PRKCE RPL36A TXN ATP5G3 PTPRT SPARCL1 SMYD2 RNF11 NAT8L CAMK4 EPHB6 SERPINF1 PTK2B ATP5J LMBR1 ID2 TSPAN7 SLC39A10 NDUFS5 ABHD8 FAM131B PRKAR1A ALDOC MAPRE2 COX17 PGAM1 TPI1 PINK1 NCOA4 OLFM1 SYT17 NUDT4 ASAP2 OAT NEFM ZNF385D RPS10 MORF4L1 ADCYAP1 GSTP1 PFN2 HMGCR VAPB ATP2B4 SNCG PDP1 SNCA FKBP1B LMBRD2 RSL24D1 PLD3 UROD UHMK1 SH3BGRL3 ENO1 SYT13 UQCRQ COX4I1 MTATP6P1 MAST3 ATP6V0D1 MORF4L2 ISCU ITM2B CDK5R1 STMN1 MRAP2 GPR37 WDR47 MPPED1 RPL32 RPL15 PGM2L1 EDF1 POLR2L SPTBN1 CYCS DYNLL1 CAMK2D MDH1 RPL8 INSIG1 TUBA1A MTRNR2L6 PSMB3 PCDHGA6 PCDHGA5 PCDHGA10\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "pyramidal neuron" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MT-CO3 SYT1 MT-ND4 MAP1B MT-ND2 MT-CO1 CALM2 YWHAG STMN1 RTN3 TMSB4X HSP90AB1 SNAP25 MT-ND3 GAPDH MT-CO2 HSP90AA1 GPM6A PRNP NDUFB8 APP PSD3 EIF4A2 SYN1 PKM SH3GL2 ARHGDIA RTN1 FTL NRCAM TSPYL1 NAPB COX6C AP2M1 ZFAND5 OAZ1 PGAM1 DKK3 DYNLL1 VAMP2 PHYHIPL NCALD TMSB10 GRIN1 CHN1 NRGN PGM2L1 THY1 CKB PIK3R1 PRKCB TUBA1B CALM1 ATP1B1 VSNL1 COX4I1 UBE2QL1 PPP1CB MTATP6P1 TOMM20 DCLK1 SYNGR1 CDH24 OPA1 LDHB STXBP1 RPL35 UQCR11 SKP1 PPIA PEG10 GMFB INSIG1 GDA ITFG1 DIRAS2 PPP2R1A RPL13A PRKACB GOT1 CAPZA2 CDK5R1 CLSTN1 MED10 SPTBN1 RPS28 TSPAN7 YWHAH SRP9 SNCB TPI1 CLU MTRNR2L12 MT-ATP6 NAPA OAT CLTB ATP6V1B2 NDRG4 CAPZB MRPL52 SV2B MGST3 KIF1A MAST3 B2M RHEB ENC1 PFDN1 KIF5A MT-ND1 NGFRAP1 SLC17A7 GNAQ ARL6IP1 CNRIP1 NECAB1 WSB2 PJA2 SNAP91 PPP3CA MT-CYB PRKCE THOC7 WASF1 TUBB4A ARPP19 MDH1 TUBA1A MORF4L1 BASP1 PTPRT AP2S1 TMEM14A ARL8B NAP1L2 HDLBP UQCRH IDS MRPL20 CAMK2D PET100 BEX1 PTMA CHGB NBL1 TPT1 MAPK8IP2 ATP5O BAG4 TMEM70 MAGED1 PLCXD3 HK1 CXXC4 IQCK ERH RAB3A HS3ST2 PPM1A LMO3 KCNC2 ADAM23 UTRN PRKCG C19ORF53 NUDT4 ATP2A2 EFR3A ATP6AP2 SELT CHL1 DNER PRDX5 TUBB3 MAPRE2 CALM3 CADM3 GNB1 CYFIP2 RPS26 MRFAP1 SLC38A1 NRSN2 EPB41L3 AP3S1 GABRA1 OCIAD1 NEFM CAMK4 SCG2 SNRNP25 PEBP1 TMOD2 BLVRB EDIL3 PNMA2 CADPS2 RAB6A ATP1B2 HIGD1A SCAMP5 CTNNA2 KIF3C MED31 CLTA COX7A1 RPL7 UBE2D2 MDH2 CAP2 FAM131B RPRM ACTG1 SRP14 FGF12 SLC22A17 COX7A2 KRT86 APLP1 APLP2 PLCXD2 BAALC SERP2 C7ORF50 PSAP NFE2L1 TMEM59L MTCH1 BSN FKBP1B TCEAL2 BEX2 ENSA SSBP3 SARAF RP11-195F19.5 NMNAT2 SCN3B FAM43B VDAC1 MT-ND4L FKBP8 UBA1 DNAJC6 LAMTOR5 COX7C GRINA RASGRP1 RAB37 TMEM258 USP5 GPR158 VAPB NDUFB7 TMEM160 RAP1GAP2 SEZ6 PRDX1 CLSTN2 SYNPO TM2D3 DGUOK MAP1LC3B CRYM SLC6A17 BAI2 UBA52 ARF1 GJB5 NFIA C18ORF32 REPS2 BCAP31 OLFM1 SLC12A5 NEGR1 RAP1GDS1 PHYHIP GPX1 ACOT7 MFN2 WBP2 PPP2R4 NCDN FLOT2 EID1 FASN DNM3 GABRG1 HPRT1 ATP5J VDAC3 SEC61G MTRNR2L1 ARF3 WBP11 YWHAQ NGEF C2ORF80 MPP1 DYNLL2 RAPGEF5 C19ORF70 CRIP2 MAP7D1 SRM SPARCL1 ATP5G3 STMN2 NDRG3 EIF1 SPRYD3 MORF4L2 FAM3C RPL37A IGSF21 CADM2 CNTN1 SYT5 PI4KA STX1B TMEM151A SPHKAP ATP1A3 RPL38 ENO2 NDUFS5 EPS15 WFS1 RPS10 RAN RFK CTXN1 TEX2 TCEAL5 CTGF SULT4A1 KRT17 NDUFC2 TLE4 HTR2A SYT11 RPS3A FKBP1A ATP6V0B TRMT112 LAGE3 CORO2B RPS5 DNAJB6 GRM3 PNMAL1 CCK NEFL ARF5 SERINC1 INPP5F FAM198B ANAPC13 PNMAL2 SERINC3 AP2B1 RAB3IP NRAS TCEB2 SAMM50 ETS2 RPL11 AK5 COX5B RTN4 FAIM2 YWHAB DYNLRB1 SH3BGRL2 NUAK1 UBC PITPNA RAB3B ENOPH1 ZBTB18 GDI1 YWHAZ TPD52 KLC1 NDUFA1 PTN IPCEF1 MAP2K1 PGK1 TUBB2A TGOLN2 B3GNT1 CX3CL1 MTPN EIF4G2 PRKAR1A SMIM13 PCSK1N SIRPA PREPL SLC9A6 ATP6V1G2 NSF MTRNR2L6 ALDOA ATP6V0C RPL41 GABARAP RP11-20I23.1 BSCL2 NDUFA13 RNASEK-C17ORF49 RPL21 PCDHA4 PCDHA9 PCDHAC1 PCDHA10\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "pyramidal neuron" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MT-ND4 MT-CO3 SNAP25 CHN1 MT-CO2 MT-CYB TPPP RTN4 CALM2 MT-ATP6 MT-CO1 RPL31 MTRNR2L1 WASF1 PGM2L1 CHGB MAPK1 EIF4A2 YWHAG GDI1 IPCEF1 SERINC3 SPARCL1 JUND RPL37A GPM6A TOX STX1A RTN1 DIRAS2 MTPN NRGN AP3S1 NPTN MT-ND3 MLF2 ENC1 TMSB4X YWHAZ MT-ND2 ATP2B2 CKB NAPB FGF12 CLTC KIF1A SEPW1 PPP3CA RTN3 GABRA1 CNTN1 UQCRB STK24 KLC1 SYT1 MTRNR2L12 GNAQ RNF11 YAF2 HSP90AB1 THY1 CYFIP2 RP11-111M22.2 OLFM1 PPP2R2B GAP43 CD99L2 SERINC1 UHMK1 MTG1 SNCG PSAP NIPA1 ARL6IP1 PEBP1 CRKL BCAP31 PEA15 RPS15 FLOT2 RABAC1 MORF4L1 NDUFA5 MAP1B TSC22D1 RPS12 SNCB DPY19L1 SPTBN1 DACH1 CPLX2 CTBP1 SYT13 CTNND2 CMAS ATP6V1C1 PIN1 UBE2QL1 ARPP19 TERF2IP SCN3B ARF3 CDHR1 NDUFB8 TSPYL1 RPL35 CLSTN1 RPL11 ACLY APP ASPDH BEX2 ATP1A1 MAPRE3 MTRNR2L8 CTXN1 PNKP VAMP2 ITFG1 FAM3C GNG2 MAP7D2 CPE ATP5I EFR3A PGAM1 STMN2 SLC24A2 CLU DNAJB6 B3GALT2 CMPK1 ATP6V0E2 AK5 GRIN2A FXYD6 PLCB1 FSTL5 ATP1A3 ATP1B1 LDHB PJA2 SEZ6L2 PEX5L AQP4 PRKAR1B HS3ST4 CALM3 MTRNR2L6 COX6C PRPS1 YWHAH ATP2B4 ARL2BP GPR158 WBP2 FOXP2 MMD BSN PRKACB NRCAM NCALD SNAP91 NBL1 EPS15 C1ORF52 MT-ND4L CAMK2D FBXL16 NDFIP2 MTATP6P1 KCNAB2 UBE2M PREPL RPL36A SNX17 RP11-195F19.5 PRDX3 NDUFB5 DCLK1 RPL32 NAP1L2 SUMO2 OXR1 DHCR24 CHL1 HINT1 ATP6V1B2 OAZ1 RPL6 IDS NR1I3 RPS10 NSF NGRN DNAJC21 TBC1D15 RP11-219A15.1\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "pyramidal neuron" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: RTN4 SYT1 SNAP25 CCK CALM2 MAP1B NPTXR PSAP STMN4 CHN1 GPM6A ATP1A1 MT-ND4 CALM3 MT-CO1 TPI1 CLU TUBB2A PRNP ENO2 CALM1 ITM2C NRGN ENC1 ATP1B1 HSP90AA1 ARPP19 TUBA1B GDI1 DKK3 CAB39 SMIM13 UBE2QL1 PNMA2 TSC22D1 PEBP1 RTN1 APLP1 RAB6B RHBDD2 CLTC MYL12B CLSTN1 MT-CO2 HSP90AB1 ATP1A3 MT-CO3 RAB11A MT-ATP6 VSNL1 SLC22A17 ATP9A NRCAM DPYSL2 TSPAN7 CAP2 THY1 NCEH1 PDP1 FKBP1A CX3CL1 CDC42SE2 FIGN IPCEF1 CKB NCDN UQCR10 GNB1 NEFL NGEF PSD3 RGS4 SPARCL1 CPE ACTG1 UQCRH SNRPN PIK3R1 ZFAND5 SYNGR1 LMO4 SLC12A5 RAB2A CHP1 GAPDH YWHAZ OLFM2 ATP6AP2 FAIM2 GSTP1 MAST3 ATP6V1F BSG SUSD4 PI4KA PPP2CB YWHAH MORF4L1 STX1A GAP43 YWHAG HMGCR PNMA1 CNTNAP5 SLC39A10 FXYD6 MT-ND1 CAMK4 NCAM2 LDHB APP NEGR1 ITM2B ARL8B CARTPT HMP19 PRKAR1A NARS TUBB4A CPNE4 RPL13A CMAS SNAP91 NECAB1 KLC1 PEX5L AP2B1 VAMP2 SNCA ATP6V1E1 UCHL1 NSF SEPW1 PRKCB PHYHIP SYNJ1 EIF4A2 PGRMC1 BNIP3 AK5 MAP4 C19ORF10 SPCS2 NEFM KCNA3 MDH1 CRKL NDFIP1 TXN SV2B KCNAB2 FTH1 NFE2L1 SERPINE2 NCALD ATP2B2 CHL1 ARL8A CABP1 GRM3 GRINA RPS6 ISCU CADM3 BEX1 TSPYL1 OLA1 UBE2N GPX3 PRKCE H2AFZ RILPL2 BEND4 PPP2R4 PCSK1 UQCRC2 ADD2 MBP GABRA5 HNRNPH2 ATP2A2 PNKD CLIP2 STXBP1 ATXN10 ABRACL FAM127A MT-ND2 UBE2L6 TPGS2 NDUFS5 CDK5R2 GABARAP PHB FGF12 MAP1LC3B KCNK1 SNX17 ALDOA CLEC2L TMSB10 C9ORF16 LMBRD2 NKIRAS1 GDA CSDE1 CCDC85B SEZ6L CDK17 RAN RLIM UBA1 SUB1 TBCB FBXL16 NAT8L FAM134A TBCA MT-ND3 VDAC1 FXYD7 C6ORF1 CREG2 SULT4A1 TOMM20 PPP1CB CHGB PKM NPY HIGD1A SYT4 CALN1 SKP1 BSCL2 ATP6V0B MAGED1 FTL RNF11 ACTR1A MAOB TRHDE NDUFA1 EGFL7 EIF1 PPP2CA EPHB6 CACNG3 NDUFB11 TRIM37 NDUFA11 NDUFB5 SARAF MMP24-AS1 SNCB BEX2 OLFM1 SLC25A4 RTN3 CBLN4 TKT HPRT1 NPTX1 ARHGDIG RHOB OPCML PTPRN CD59 MRFAP1 CNTN1 RAPGEF5 CAMK2D ZBTB18 NUAK1 SYTL2 ATP2B4 LSM4 PIN1 WASF1 NPTN ITFG1 MUM1L1 NDRG4 ACP1 JUN PJA2 ELAVL4 DMTN DCLK1 EIF1AX KCNF1 CEP72 BASP1 SIRPA SRP14 ELMO1 ATP5G2 JUND CAPZB SERPINF1 GOT1 GPATCH4 ENO1 CADM2 ZFP36L1 FAT3 ARF3 TUBA1A TMEM258 RAB6A ANXA6 SH3GL2 ATP5G1 TMEM141 HMGCS1 PRKACB CNP ABHD14A TMX4 BRK1 HSPBP1 SLC17A7 DYNLL1 CD99L2 GADD45GIP1 COPS8 PLCB1 PET100 SYT13 DDN ACLY SYNPO RPS15 PPP2R2C DYNC1I1 ACOT7 DPY30 ARF5 NDUFV1 SERINC3 OAZ1 PDE1A NPTX2 OXR1 SCN1A RHEB KLC2 NDUFB1 ARL6IP1 REEP5 CRYM RORB DPP6 SERPINI1 ATP6V1B2 ATP5F1 SCOC MAPRE2 ADSS NDRG3 HSPA8 NAPB MLF2 TUBA4A INPP5F NGFRAP1 OCIAD1 SCN2B GNAQ VDAC3 CPLX1 C2ORF80 ATP6V1G2 RP11-20I23.1 TUBB3 ATP6V0C PGAM1 RPL41 PCDHA4 PCDHA10 PCDHA9 PCDHAC1\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "pyramidal neuron" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: SYT1 CALM1 MT-CO1 MT-CO3 VSNL1 CHN1 SNAP25 RTN1 PPP3CA BEX1 FGF12 ARL8A TMSB10 BASP1 PSD3 PTGDS CDK5R1 SULT4A1 ACTG1 FTL ACTB C4ORF3 YWHAG APP NRGN NDRG4 FXYD7 YWHAB PIK3R1 MTRNR2L1 GPM6A CHMP4B EIF1 CALM3 SYT4 MAPK8IP2 NAP1L2 MT-ND2 DMTN PGRMC1 SEPW1 MAP7D2 WFS1 ARPP19 CNTN1 GRIN2A MT-ND3 TSC22D1 PRKACB EIF4A2 YWHAH HPRT1 NMNAT2 MT-ND4 SCN3B RPL38 PLCB1 SUB1 ATP5G3 ENC1 VAMP2 TUBB2A MT-CYB NECAB1 GRIN1 APLP1 STXBP1 PTMA GAP43 TF MRPL12 PMP2 CREG2 GUCY1A3 SEZ6L2 MLLT11 USP5 AP2S1 ATP5B DNAJB6 NDUFB7 CLSTN1 PHYHIP HTRA1 MAP2K1 USMG5 C6ORF1 PPP2R4 TMEM258 RPL13 ATP6V1C1 BSN SNCA EPDR1 SH3BGRL2 NUAK1 CADM2 CD63 MRFAP1 AP1S1 OLFM1 ANAPC11 ALDOA CDK14 PELI3 MAST3 RNF181 ITM2C NDFIP1 SPOCK2 KIFAP3 TUBA1B LDOC1L PSMA7 BLOC1S1 BNIP3 ATRN EFR3A WASF1 ATP5H PGM2L1 DRAP1 MYL6B CDK17 KLHDC3 THY1 GSTO1 PRKAR1B PREPL PNMAL2 ARF3 RTN4 DIRAS2 MTRNR2L6 MT-CO2 MAP1LC3B TUBB4B C19ORF43 SYNPR PPDPF EID1 MT-ND1 MTRNR2L8 RHEB PI16 AP3S1 HN1 IDH3A SLC38A1 ETS1 MAPRE2 RAB27B OPA1 DNAJC6 LMO3 FAM3C SYNPO HSP90AB1 MTPN HDLBP RAB3A OCIAD1 TCEB2 CLTC NGFRAP1 LRP1B H2AFZ SEC61G SLC25A22 ATP5J RLIM RPL3 SPARCL1 PKM SPTBN1 GABARAPL2 RTN4R CLU ELAVL4 KRAS MAP7D1 MTRNR2L12 SUCLA2 RAB11A CA11 MTCH1 TPPP MAP2K2 CLTA HEPACAM RAB6A COPS8 CALM2 LANCL1 ATP6V1B2 CDC42SE2 SERPINI1 SLC7A1 ABCA8 ATP1A3 UBL4A ENO1 ITFG1 C9ORF16 COL9A2 RAN IQSEC1 COPRS UCHL1 RPL15 ATP6V1A FKBP1A FAM84A RNF11 GNB1 NARS DNAJA1 CPLX2 STMN2 SUMO3 ATP9A TLN2 RPS26 SYT11 CABP1 AP2M1 PEX5L NDUFB1 RPL17 CADPS2 TAGLN3 FAM134A POU3F1 INA GDI1 C1ORF115 TSPAN7 PPP2CB ALCAM SV2B ARF5 BEX2 ATP2B4 TUBA1A CHL1 RPS27A RAB4A UQCRB PPP2CA BEX4 GSK3A TOMM20 PEBP1 RHBDD2 SNCG PGAM1 TBR1 MT-ATP6 PINK1 SCOC SERINC3 RPL39 STX1A UQCRFS1 NEFL UQCRH RAPGEF5 LAMTOR1 TMSB4X PEA15 CYC1 PRDX5 LGALS1 MAPK1 NHP2L1 TRIM37 PPP3CB PFKP MEGF10 CARTPT KLC1 PAM GNAQ SLC39A10 FTH1 PDLIM5 RPL37A DPYSL2 BSCL2 RPL41 RPL36A MIF DNAJC21 TBC1D15\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "pyramidal neuron" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: CLU SNAP25 MAP1B HSP90AA1 APP GFAP RTN3 MT-CO2 NEFL ENC1 GAPDH ATP1B1 CHN1 PSAP CKB MT-CO3 CLTC CCK NAA38 PKM PTGDS MT-CO1 GDI1 SPARCL1 NRGN CNTN1 PEBP1 SYT1 CD99L2 PPIA CLSTN1 ACTG1 TSPAN7 LANCL1 SV2B UBC APLP1 RTN4 SPOCK2 NEGR1 SCN1A ZIC1 DNAJB6 NEFM SLC6A17 KLC1 ATP2B2 EIF4A2 RHOA ANGPTL4 AP2M1 GRIN1 CADM3 CTSD TPT1 CALM2 CYP4F11 MYL6 RAMP1 NRCAM PNMA2 NPTN NCDN GPM6A FTH1 PRKCE GJA1 PDE1A HSPBP1 FABP5 TMSB10 SLC1A2 ATP1A3 PTGES3 MT-ND1 NELL2 PREPL VSNL1 CERS6 NPTXR CYFIP2 RP11-20I23.1 ATP6V0C NSF DKK3 TUBB2B RPS12 PPP3CA CISD1 ARF3 OPCML MYEOV2 LAMA4 DCAF12L2 TM6SF1 TMEM35 YWHAZ TMSB4X TCEB2 C9ORF16 RTN1 MPP1 DPYSL2 ALDH1L1 ABHD14A SPOCK1 PGM2L1 QKI STMN3 NAP1L5 PTPRS MAGED1 DCLK1 CD44 ENO2 STMN2 PHB COPS7A AXL CDS1 MT2A CHGB GABRA1 ITPR2 PJA2 ARPP19 SCD5 ATP9A PCDHB4 SYT4 PLTP PRNP DSTN NCEH1 ATP5B SH3BGRL3 PRKCB RHEB FAM127A CBLN4 EDF1 SCOC C14ORF2 MMP24-AS1 UCHL1 CRKL PGRMC1 AES MGST3 GOT1 MORF4L1 PDE9A TPI1 FAIM2 PCMT1 UBE2E3 NAT8L ATP1B2 PROCA1 ATP1A2 SSTR2 PTN CHMP4B LMBRD2 TSC22D1 IDH3A EPS15 UBA1 RAB6B CDH22 MTRNR2L1 TOLLIP C1ORF233 NFIA LMO4 VSTM2L MAPK1 SLC9A6 BEX4 CST3 CABP1 PBX3 RNF11 PTPRN GJB6 TUBA4A SIRPA MT-ATP6 STXBP1 ACTR1A CCL2 RAB1A MT3 SLC22A17 PPDPF AHNAK2 MYL6B ATP6AP2 RAB7A MAP1A PLD3 EDIL3 BANF1 CTBP1 OXR1 GMFB RAB5C DPP6 CALM1 SPTBN1 UBB ACOT7 RAD23B RPL37A RP11-195F19.5 RPL11 NDFIP1 CAP2 COL6A1 ATP6V1B2 BASP1 FAM3C TMX4 PIEZO1 BTBD10 YWHAG ENO1 NME1 RFK PRKAR1B AK5 NDFIP2 ACTB TPRG1L NECAB1 TSPYL1 EIF4G2 KIF5A GNG2 CAMK2G RGS4 ARHGDIA SARAF FJX1 FOS VAMP2 ATP5F1 PFKP TMEM59L DNER IGFBP2 CTXN1 CBX6 ACLY WASF1 HSPB8 ASNA1 ATP5J2 SCG2 SKP1 NPAS3 YWHAH SLC17A7 MT-ND2 NDRG4 MAP7D2 PCYT2 ARL8A STXBP6 MRPL52 ITGA6 CLDN10 MT-ND4 D4S234E SPOCK3 ANO3 CADM2 MTATP6P1 ZNF547 ALDOC MTRNR2L12 GSTO1 SLC1A3 DYNLL1 ATP6AP1 PSMD8 RASGRP1 TSPYL4 VDAC2 TCEB1 SLC12A5 IFITM3 TUBA1A VPS35 SNCB LDHB ZNF385D ESCO2 SYTL2 RAB3B RPL17-C18ORF32 IDS BSCL2 ALDOA TUBB3 C18ORF32 HNRNPA1P40 DNAJC21 TBC1D15\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "pyramidal neuron" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MT-CO3 MT-CO1 ATP1B1 TSPYL1 SNAP25 TMSB4X MTRNR2L1 VSNL1 CALM2 HSP90AA1 RPL13 SYT1 MT-CYB GPCPD1 RPL41 NDFIP1 NPTN ACTB CHN1 MT-ND4 MT-ND3 ATP1A3 TMEM14A MAP1B HSP90AB1 CYFIP2 SYN1 PSAP CKB MT-ATP6 PREPL NAP1L3 MFSD2A LMO4 YWHAZ OXR1 PKM TUBA4A MTRNR2L6 HSPB1 SYT4 APLP2 TUBB2A NGFRAP1 CLDN5 PITPNA OPA1 SPTBN1 TPT1 RTN4 CALM3 TOLLIP GDI1 RTN3 RPL13A VSTM2L RGS4 RPL37A SLC12A5 TMA7 ST20 TRIB1 CNTNAP5 PNMA2 CD99L2 HRK ATP6V1A RAB2A PRKAR1A BHLHE40 A2M BEX1 MPPED1 CTNNB1 NCDN SV2B ASAP1 SKP1 GAPDH FLT1 DUSP1 BASP1 SARAF MAP1LC3A TMEM59L KCNAB2 HN1 RGCC RAB11A UQCR11 DPYSL2 SUB1 NRCAM CALM1 ATP6AP2 CLU PCP4 RAB3A CPE SERINC1 PRNP GNAQ SCAMP5 MT-ND2 THY1 BTNL9 ANO3 PPM1A YWHAB CLTC PRDX2 STMN2 TNS1 TSC22D1 DYNLL2 ATP5C1 LPAR6 TKT MYEOV2 UBC PFN1 TM4SF1 NSF ATP6V1B2 SERINC3 RND3 PPIA ACOT7 RHOA COX4I1 DIRAS2 RPL38 KANK3 PREX2 GABRA1 PRKACB RAP2A MTRNR2L12 KL PARP9 PNMA1 SLC39A10 ACTL6A GNG5 VDAC1 RAB6B PRUNE2 CIAPIN1 SCD5 EIF5A2 RAMP2 CORO2B EFR3A PECAM1 AHNAK TSPYL5 ARHGAP35 UBB FAT3 VDAC3 PPP2CB RASGRF1 RPL35 EDN1 DCTPP1 VAMP1 ELAVL4 MAPK1 MT-ND5 GUK1 NDFIP2 SLC7A8 DGUOK NDUFB5 COX17 TSPYL4 IGSF21 ARFGAP2 USP5 HSPA8 SSBP3 TIMP3 SPOCK2 TSPAN7 RTN1 CST3 STOM ATP6V0E2 ATP5B NELL2 TLN2 KCNK1 SLC9A6 MT-ND4L ATP2A2 SEPT1 RAB11FIP5 SERPINI1 AP2B1 PTPN20A S100A10 FAM3C APP GAD1 ITFG1 SYNJ1 ZIC2 VAMP5 ALCAM TPD52 ENSA RPS26 LEF1 GPX1 SPOCK1 PLCB1 KLF2 SCN1A EID1 PPA1 SPARCL1 CABP1 EPB41L3 COPG1 RPL17-C18ORF32 LINGO1 SNRPN PHYHIP CHMP5 CX3CL1 TMX4 YJEFN3 UBE2QL1 GMFB IQSEC1 ARF3 UHMK1 SLC25A6 CACNA1H EBF1 SCAND1 TOX GFRA2 SIRPA JUND SCN4B CREG2 DPP6 PFN2 PAM SLC38A1 ARL1 RAB3C OAT PLD3 MAPK8IP2 ABCG2 PGRMC1 LBH GADD45B NTN4 ARL4C DKK3 TPRG1L PTMA PFKP NRGN PCMT1 TOMM20 EGFL7 VAT1L EDIL3 MLF2 ZFAND5 SLC7A5 IFT52 CTNNA2 ARHGAP29 EPHB6 RFK RHOB CLSTN1 RPS28 SEPW1 THYN1 LSR ARL4D COX6C CRYM CNTN1 PGAM1 SERPINE2 RPL15 RPS27A COX7B ELMO1 NRSN2 MAGED1 C18ORF32 RPS12 TMSB10 BCL6 PCBP1 WBP2 PLS3 DCTN1 SCN2B RAB6A DYNLRB1 ATP2B2 MT-CO2 VAMP2 SLC38A5 MDH1 DNAJC5 ATP5G3 CCM2L ENC1 FABP5 GOT1 C9ORF16 NEFL STMN3 ITM2B KCNF1 CAMK2G COX7A2L SLC17A7 MORF4L2 ARPP19 SYNGR3 NDRG4 OPCML SPATA13 GUCY1B3 VWA1 ENO2 TM2D3 EIF4A2 LDB2 RPL18A PHYHIPL ITM2C RP11-20I23.1 ATP6V0C B2M ATP6V1G2 PCDHGA6 PCDHGA10 PCDHGA5\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "pyramidal neuron" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: CALM2 CALM1 SNAP25 MT-CO1 VSNL1 YWHAH MT-ND2 VAMP2 ENC1 CALM3 MT-ND4 GPM6A PSD3 RTN1 PRKCB MT-ND3 ITM2C OLFM1 NDFIP1 ATP1A1 ARF5 SERF2 HSP90AA1 MARCKS APP PRNP SLC17A7 PRKACB STXBP1 SYT1 PTPRN FBXO2 COX6C ENO2 MT-CO3 NDUFS5 SYN1 CKB CREG2 SEPW1 PPP1CB BEX1 ATP5H MT-ND1 RAB1A CCK SUMO1 TOMM20 YWHAG RTN4 MTPN NRGN TUBA1B SERINC1 TIMP2 USMG5 TSPAN7 TMSB4X MTRNR2L12 GDI1 EIF1AX PCMT1 MT-CO2 ITM2B ARPP19 THY1 C4ORF3 RHBDD2 TMA7 CHN1 HN1 RP11-20I23.1 ATP6V0C SNX10 ARL8B CLIP2 DYNLRB1 STMN4 SLC25A6 ARL4C PAK1 ALDH5A1 HSP90AB1 NDUFB4 AK5 SNCB PPDPF SELM SYT11 CYFIP2 PNMA1 UQCR11 ADD2 TESPA1 HDDC2 IGSF21 PGM2L1 MT-ND5 NSF AP1S1 FAM134A BRK1 SUMO3 FTH1 OAZ1 TMEM65 KIF1A SLC25A22 CDC42SE2 RPL11 GNG2 IDS KCNV1 DPYSL2 UCHL1 HMGCR EIF4G2 FSCN1 MAL2 FXYD7 CAP2 SERPINI1 ACTB MTRNR2L1 MTATP6P1 TMEM11 NHP2 PRKCG EDF1 CRIP2 NDUFA11 PEBP1 DYNLL1 HOPX ATP6AP1 LYNX1 KIF5A TAGLN3 CLU CNTN1 CPE AP2M1 SRP9 NGFRAP1 APLP2 TUBA1A MT-CYB CYCS HAPLN4 PPP3CB NFIA ATP1A3 CFL1 FAM96B SNX17 PCDH19 STK39 HS6ST3 PFKP TUBB2A PFN2 HSPB1 MLLT11 SYNGR1 RAB4A YWHAZ PPP3CA HINT1 PSMB7 ADSS PLCB1 NREP PSMC3 MAPK1 SAP18 SDC4 ACOT7 MT-ATP6 SPOCK1 UBA52 CTNNA2 IQSEC1 BASP1 COX6A1 RPL41 SH3BGRL2 SNX3 NEFM MFN2 SNRPN PREPL HK1 PAFAH1B2 C14ORF132 ATP2B2 TUBB4A PDCD5 LDB2 BEX4 C19ORF53 SYN2 GABARAPL2 NGEF NCEH1 CTNND2 OPA1 CNRIP1 RPH3A LINC01296 FAT3 UQCRC2 OCIAD1 NDFIP2 PSMC1 ATP1B1 PJA2 PTMA NBL1 LPPR4 AP2S1 RGS4 ARHGDIA INA S100B CYSTM1 C9ORF16 LMO4 CCDC184 SLIT1 SNCA CDC37 UBQLN2 UQCRQ HPCA IPCEF1 C19ORF43 FAM3C DIRAS2 UBE2N DNER SNCG RAP1GAP2 KCNK1 RPL37A ATP6V1B2 HMP19 PDP1 ATP5F1 RHEB ATP5E RAB6B SYTL2 CKS2 NDUFA4 AP3S1 PTGDS UBC GFRA2 PINK1 DKK3 CLTC PGAM1 SUB1 YWHAB RAB3A MAP2K1 KCNC2 TMX4 EPB41L3 RASGRF2 ACLY DDN CHL1 ANAPC11 PANX1 ATP2A2 DCTN1 ALDOA MTRNR2L6 RPS26 TUBB TBC1D15 DNAJC21 PCDHGA10 PCDHGA6 PCDHGA5\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "pyramidal neuron" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MT-CO1 CHN1 MT-CO3 CLU PSAP MT-CYB RTN3 CCK GPM6A ENC1 PKM SYT1 NRGN MT-CO2 MT-ND4 ATP1B1 MT-ND2 RTN1 SPARCL1 DPYSL2 CADM3 GABRA1 CALM1 RTN4 MAP1B MT-ATP6 TPI1 HSP90AB1 SLC17A7 TMSB4X SLC22A17 NDUFA1 NPTXR CALM3 RAB3A CALM2 NGFRAP1 GDA DPP6 MTRNR2L1 TSPAN7 YWHAG ATP6V0B ATP6V1B2 EIF1AX PHYHIP BEX1 VSNL1 FTH1 LMO4 GAPDH TMOD2 PPP3CA PREPL SNAP25 C18ORF32 APP RAB6B APLP1 RPL41 ATP2A2 ARL6IP1 UBL5 CLSTN1 PPA1 MTCH1 RGS4 TMSB10 PJA2 TMX4 KLC1 FAIM2 CDH13 PEBP1 PPM1A TMEM59L SARAF PCMT1 OAT BEX2 ARPP19 AP3S1 EPHB6 TUBA1B RPS15 DCTN1 ATP6V1C1 PFN2 BAALC ENO2 RNASEK-C17ORF49 COPS8 MRFAP1 CRIP2 VAMP2 EIF4A2 PIK3R1 PRNP PRKAR1B TOMM20 RABAC1 PPP2CA KLHDC3 CPE NBL1 NPTX1 SLC39A10 ZNF365 EGFL7 FKBP8 STXBP1 CBLN4 CEND1 CD63 GDI1 THY1 MRPL33 SCAMP5 KCNK1 ATP6AP2 GOT1 SEPW1 SLC25A6 ACTR10 DIRAS1 TUBA4A NGEF CAP2 UBB C1D CREG2 UQCRQ SMIM13 RHBDD2 PGRMC1 WASL MAGED1 NGRN UCHL1 DRAP1 SNX10 MYEOV2 CAMK2G SYT11 SLC12A5 PSMC3 SYNJ1 STMN1 D4S234E PI4KA TSPYL1 APLP2 NHP2L1 HOMER1 PGK1 NUAK1 LDHB CYFIP2 CKB NDUFA4 HMP19 SNRPN OCIAD1 SYNGR3 MAPK1 GSK3A NDRG4 TSC22D1 PRKCE HINT1 MAP1A PRKCB ATP5A1 DNM3 PDP1 CNTN1 KIF1A BCAP31 RPS26 YWHAB SCG2 DSTN OLFM1 RBX1 NDUFB11 UQCRC1 RRM2B C19ORF70 MT-ND3 TCEAL2 LL0XNC01-16G2.1 PTK2B OAZ1 ADORA1 PPP2R2B BANF1 BHLHE40 NUTF2 UHMK1 LINGO1 ITFG1 HSPA8 PSMC5 BNIP3 PEF1 DIRAS2 MGST3 PPP2R1A DDN SH3BGRL3 NDUFB10 RPL39 NEFL HOPX UBA52 ANAPC11 KCNA2 PAK1 NAT8L COX14 NDUFB7 PRKACB FKBP1A S100A6 YAF2 LGALS1 EFR3A RPL18A GPR158 STMN2 SLC7A5 C12ORF49 FAM134A CAMKK2 C14ORF2 MAP2K2 RAB1A TMEM35 HMGCS1 ETS2 PPP2R4 CDKN2D WDR47 PRKAR1A SNX17 YWHAZ RPH3A ATP1A1 PPP3CB SYT13 OPA1 EDIL3 AP2M1 CA11 CERS6 RPL35 NRIP3 MAP4 EID1 GABARAPL1 CDK17 SERPINE2 NPTX2 CDK5R1 VGF PCDH19 ACP1 CHMP5 GTF2B NECAB1 UQCRH AURKAIP1 ATP1A3 MDH1 PRDX5 OLFM2 RPL37A NDRG3 ARHGDIG ID2 GNG2 ETFB SLC24A2 MTATP6P1 SYN1 SERINC1 RAD23B HSPBP1 RILPL2 HSP90AA1 HK1 AP2S1 KCNV1 ITM2C TOLLIP ISCA1 CNR1 ATP6V1A ATP2B4 PLCXD3 GPX4 ESYT1 CAPNS1 NAPB NCDN LINC00116 FAM84A PRELID1 ATP6AP1 CYB5R3 SCD5 TGOLN2 PPIH LDB2 OPN3 FXYD6 MAP7D2 GYG1 NNAT RPS28 UBE2V2 LIMK1 PGAM1 KIAA1045 RNF11 CFL1 NDUFC2 COX4I1 FIS1 TRIM47 MT3 ARL6IP5 CHL1 GMFB NRSN2 NDUFB1 CORO2B CADM2 RPL11 ZBTB18 PFDN1 ATP5E SLIT1 BSN NEUROD6 C1ORF115 BSG TMA7 CLTC ENSA MAST3 SCN1A PPP2R2C COX5A LYNX1 SH3GL2 NDUFB8 ZFAND5 PSD3 CACNB1 CYCS PITPNA ACTB SERINC3 OPRM1 NAP1L3 POMP RRAGA TMEM230 MORF4L2 GAP43 SYT4 DYNC1I1 OXR1 RGS12 KCNC2 RASGRP1 YWHAH UBE2QL1 ZNF503 WSB2 OPCML TKT TM2D3 RAB2A DMTN TRMT112 ALCAM REEP5 COPS7A HDLBP SYN2 LYSMD2 GPCPD1 PGM2L1 CHI3L1 NDUFS5 MACROD1 AES COX8A ALDOC GHITM PNKD NDFIP1 PPP1R9B PPIA ADAM23 RAB5C ATXN10 PCYT2 TCEB1 TMEM151A ATP5G3 TUBB4A C6ORF1 RASGRF1 SNAP91 FKBP4 CTNND2 WBSCR17 DYNLL1 AP2B1 IDS TUBA1A RCAN2 TSPYL4 TAGLN3 COX6A1 ACOT7 DHCR24 ARF3 TLN2 PPP2CB NPTN STX1A ACTG1 COA3 VSTM2A ATP6V1F PIFO TCEB2 TMEM141 HRK MT-ND5 GUCY1B3 TBCB CAMK2D KIFAP3 KIF21A TMSB4XP4 NCALD SNCB RP11-20I23.1 RPL36A BSCL2 ATP6V0C ALDOA NSF TUBB\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "pyramidal neuron" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: PSAP CHN1 RTN3 MT-CO3 TSPYL1 APP MT-CO1 ARL6IP1 RTN1 GPM6A MT-ND4 NCEH1 TUBA1B DNAJC5 SYT1 HSP90AB1 HSP90AA1 STMN2 VAMP2 CALM3 CALM1 YWHAG PRKAR1B MT-CO2 PRNP PNMA2 CAP2 TMTC1 CPE HMP19 NUAK1 ATP6AP1 NEGR1 PHYHIP HTR2A SNAP25 YWHAZ NPTN SLC12A5 IDH3A DPYSL2 CDK5R1 PCP4 CKB NPTXR PLD3 ATP6V0E2 MT-ATP6 OXR1 TSPAN7 SPARCL1 SLC9A6 TOLLIP MBP SERF2 RTN4 KLC1 GABRA1 ALDOC LMO4 PKM RAB3C CLU PFKP FAM3C TUBB2A RPL41 SERINC1 MTATP6P1 MTRNR2L1 NRGN AP2M1 LMBRD2 TUBB4A FAIM2 PAK1 EPHB6 OLFM1 CLSTN2 UBA1 STMN3 THY1 SLC17A7 C1ORF52 KCNAB2 SERPINI1 CPLX1 OAZ1 SNN ENC1 SV2B PPIA PDE1A STX1A MT-CYB MAP1B CLSTN1 PGRMC1 STXBP1 ATP1A1 PRKACB CDS1 GDA LAP3 C12ORF49 ETV1 RAN MLF2 NRN1 TMEM147 EPS15 NDUFS5 ARL6IP5 RNF11 APLP1 ATP2A2 ARL1 TMEM151A KCNK1 SEPW1 PFN2 MTPN TMEM155 RP11-20I23.1 TUBA4A ARPP19 DNER DNAJC6 SNCB KIF21A OCIAD1 KIF1A SNAP91 MTRNR2L12 CYP26B1 GAP43 PTPRN CAMKK2 GDI1 WASL SYT11 PGM2L1 ARHGDIA PJA2 RASGRF1 NAPB PFDN4 PLCB1 RHEB NGFRAP1 CITED2 FAM127A STRAP BAI2 SNRPN NREP ATP1B1 PIK3R1 NEFL SLC22A17 MT-ND2 ACTR10 FTL WBP2 FKBP8 EIF4G2 RTN4R MAP2K4 SYT13 GNAQ FTH1 SLC24A2 ACTB HK1 UQCRB PDP1 MAP7D2 MDH1 NAP1L2 HN1 REEP5 PCMT1 MFN2 KCNC2 UQCR10 PPP1CB ATP1A3 KLHDC3 MT-ND3 LIG1 TM6SF1 DCLK1 CMAS NDUFV1 STMN1 SNX10 RAB6A ASB13 NECAB1 ITM2B CACNG3 FBXL16 GABARAPL1 ACTG1 UBQLN2 RPL36A UCHL1 BSN TMEM59L POLR2L ACLY CTXN1 VSNL1 SCN3B TMEM130 LAMTOR5 SLC6A17 ZNF365 PCDH19 RPS27A ATP6AP2 MANBAL APLP2 PRKCB ATP2B4 LYNX1 CLTC TMSB10 CFL1 PEF1 RPL15 RAB40B PHYHIPL TCEAL7 ESYT1 PRDX3 SPTBN1 ATP2B2 GHITM RAB2A PPP2R4 PRUNE2 ABHD14A CADM3 C1ORF115 MAPK1 MFSD6 WDR47 MAGED1 PPP3CA ANXA6 NTN4 ITFG1 CAMK2N2 BSG PPP3R1 NDUFB7 NDN PREPL CMPK1 NSF NCDN WASF1 SYN2 TSPYL4 ATP6V1A CLIP3 SYNJ1 COX7A2L DYNLT3 ATP9A KIF3C NEUROD2 PSD3 FLOT2 GSKIP YWHAH ATP6V0C KCNAB1 PGAM1 PAFAH1B2 BSCL2 ALDOA GABARAP IDS MTRNR2L6 PCDHA4 PCDHAC1 PCDHA10 PCDHA9\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "pyramidal neuron" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MT-CO2 MT-CO1 CALM2 CHN1 CALM1 CLU VSNL1 NECAB1 MAP1B HSP90AB1 PRNP ENC1 TSC22D1 PSAP YWHAG RTN3 MTRNR2L12 PREPL GPM6A MT-CO3 MDH1 PJA2 SYT1 PPIA ATP1A1 CLTC PPP3CA CADM2 MTRNR2L8 UQCR10 CKB CLSTN1 KIF1A SLC12A5 PRKAR1B KIFAP3 ACTB PRKCB SERINC1 LMO4 TUBA1B ACTG1 TUBA4A SLC24A2 UCHL1 ARL6IP1 ATP2B2 MT-ATP6 MTCH1 ARPP19 NGFRAP1 YWHAB RTN4 NUAK1 SNCA DPYSL2 VPS35 SLC9A6 SPOCK1 IDS RTN1 AP2B1 MT-ND4 CALM3 NAPB GAPDH TCEB2 RPL35 EIF4A2 STMN1 TAGLN3 RCAN2 PTPRN STXBP1 GFAP SLC39A10 LIMK1 ATP6V1B2 AP2M1 RAB1A SYT5 TUBB4A SLC6A17 CYFIP2 OLFM1 APLP1 TUBB2A SYT11 WBP2 SPARCL1 SYNPO NDFIP2 APP MDH2 NDFIP1 HTR2A PHYHIP CCK TUBA1A CHP1 CNRIP1 NAP1L3 WARS FXYD7 BRK1 ARF3 TMEM59L GAP43 NEGR1 SNAP25 GABRA1 DYNLL2 ITFG1 SYNGR1 CD99L2 NDUFB8 NRGN FAIM2 PNMA2 KCNMB4 PFN2 SARAF CFL1 UBE2N NRCAM DHCR24 CERS6 PRKACB FXYD6 MAPK1 SLC25A22 MT-ND2 ATP2A2 ZBTB18 NDRG4 OPA1 PPP3R1 SV2B THY1 ATP1B1 COX7B NEFL CADM3 ARF5 TLN2 PINK1 RAP1GDS1 PAQR9 SLC39A3 LGI3 ATP6V0C NCAM2 EPS15 SLC9A1 LDB2 UQCRQ HOPX BEX2 DPP6 C9ORF16 PEBP1 PPP2CB PKM PPP2R4 MAPRE2 CPE MT-ND3 SLC22A17 RGS4 MT3 ATP1A3 BAG4 RNF11 PPP2R2C UBC SLC17A7 DYNLL1 NDUFA13 ARHGDIA SH3GL2 SLC25A4 PPP2CA CTSD RHEB EIF1B RAN SLC7A5 STMN2 PPP3CB USP5 RAB7A RAB3C UQCRB TMEM70 MAP2K4 EGR4 PEX5L ELAVL4 SDCBP HSP90AA1 MLLT11 ATPAF1 VSTM2L RPP40 HMP19 MARCKS VDAC3 MAP7D2 DMTN NCDN SCD5 B3GNT1 ACAT2 SYN2 PPDPF FTH1 RP11-20I23.1 FKBP1A SNAP91 GPRC5B FTL HDHD1 FAM131B MT-CYB TMSB4X ANXA7 EGFL7 ATP5J CABP1 FABP5 NPTX2 SCOC ENO1 CMPK1 YWHAZ RBX1 DNAJB6 HMGCR MORF4L1 INPP5F DNAJC6 COX6B1 MYEOV2 TMSB10 KCNK1 SEZ6L2 DDN NMNAT2 HN1 TBR1 MTRNR2L1 TSPYL4 SRP14 NGRN ARL4D PIP4K2A CPLX2 KCNAB1 ARPC4 VAMP2 CTNND2 ATP6V0B MFSD6 PGRMC1 ATP5F1 SERF2 NPTX1 MAP1A RPH3A IDI1 CCDC85B TM6SF1 CDK5R1 RPS6 SNRPN ATP9A SCN1A PGAM1 CA10 LMBRD2 SYT3 FKBP8 GNAQ CDH8 CHGB RAPGEF5 TSPYL1 BCAP31 OCIAD1 RAB6B COPE DYNLT3 MFN2 NSF C1ORF233 CCDC25 NELL2 ARL8B GPX4 TMX4 ATP6AP1 NIPA1 CDKN2D ASPDH DKK3 NDUFA8 CALCRL ATP5G1 SNCB GOT1 LYNX1 KCNC2 NAPA APBB1 GNG3 KIF21A SCN1B SULF2 SUMO2 LAMTOR2 PRKCE PDP1 RPL38 KIF5A NAP1L5 BTBD10 TMTC1 GHITM NHP2L1 OAT CORO2B KLHL12 MAP4 CBX6 PRDX5 PLCXD3 OLA1 AHNAK2 PGM2L1 INSIG1 VGF GDE1 SCAMP5 FAM127A HK1 SRP9 MAST3 ST18 PCSK1N PRKAR1A SEPW1 HAPLN4 ISCU PIK3R1 PLCB1 RPS28 MTND1P23 MT-ND1 MTRNR2L6 RNASEK-C17ORF49 ATP6V1G2 MIF PCDHA9 PCDHA10 PCDHAC1 PCDHA4 PCDHGA10 PCDHGA5 PCDHGA6\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "pyramidal neuron" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MT-CO1 MT-CO3 MT-ND4 MT-CO2 MT-ND3 SNAP25 MT-CYB SYT1 MT-ND2 CHN1 MT-ATP6 MAP1B YWHAG ENC1 CALM1 MTRNR2L1 TSPYL1 NRGN MT-ND1 PPP3CA RTN4 TMSB4X APLP2 CCK OLFM1 NAPB VSNL1 ATP2B2 PPIA STXBP1 CAMK4 ATP1A1 PRKCB SUMO3 CDK5R1 LMO4 WASF1 GPM6A CPLX1 SERINC1 ZFAND5 FTH1 SNX10 INPP5F HSP90AB1 SYT11 ARPP19 TESPA1 SULT4A1 GNAQ EIF4A2 ENO2 NGFRAP1 PNMA2 TUBA1B ATP1B1 MTRNR2L6 SUB1 CALM2 SYT13 CALM3 GRIN2A COX7C MAPK1 RGS4 SNRPN RPL13A NECAB1 CABP1 CLU MTRNR2L12 OCIAD1 PEX5L RAB4A STMN3 ELAVL2 UCHL1 PPP3CB RAB3A PLCB1 TMEM230 RFK SH3GL2 PSMA7 RAP2A SLC22A17 RNF11 ARF3 RTN1 GDI1 UBE2V2 GAPDH EID1 STX1B TPD52 ATP6V0D1 NUAK1 HINT1 GRIN1 CBLN4 ZNF365 CAP2 CFL1 PPP2R2C TCEB2 ACTB ZNF503 KCNAB2 DPF3 TRAPPC1 RHEB ATP5F1 SERINC3 RASGRP1 CFL2 SERPINI1 PINK1 IQSEC1 ARL4C SCAND1 SARAF NREP DYNC1I1 NSF CDC42SE2 SLC25A4 CPE SH3BGRL2 PTPRS PREPL SCOC PPP2R2B MAPRE2 MDH1 HMGCS1 SLIT1 ATP2A2 LRRC59 MAP1A JUND ANXA6 AKAP12 TPGS2 TCEAL7 RCAN2 ARF5 HSPB1 RTN3 CEND1 UQCRC1 SLC8A2 TMEM132C RPL3 PITPNA RPL32 NAT8L CHL1 NBL1 PSD3 COX6A1 PLD3 TRIM37 MKX ITM2C HS6ST3 CDR2L PGAM1 PPP1CB POLR2I SLC17A7 RAB6B SRM SCG2 MAPRE3 MT3 GNB1 WBSCR17 PRNP SYN1 YWHAZ KLC2 PSMD12 CCDC115 MDH2 COPRS FAIM2 RASSF3 FJX1 CACNG3 UBE2F RHOA DNAJC5 EIF1 NDRG3 ADAM23 SYNGR3 CTNND2 SEPW1 BASP1 SOD1 SYT5 RSL24D1 VAMP2 UBE2D2 HPCA BEX1 RPH3A CYCS NEFL TXLNB RORB MAP7D2 TSC22D1 COX4I1 TOMM20 HMP19 EFR3A TOMM34 MT-ND4L KCNA1 SCAMP5 SNCB TSPAN7 SV2B FABP7 UBE2N HDLBP CCT5 ATP5J TERF2IP RNF208 PDP1 PFN2 PCBP1 TMSB4XP4 CAB39 SYT2 GRINA CORO2B CCDC25 ATP5E CADM2 NDUFA2 RAB2A RASGRF1 PRUNE2 TMX4 SLC24A2 GNG3 TMEM120A SCN1A DNAJC6 CLTC ATPAF1 MFSD6 EPHB6 WDR47 LINC00087 UQCRH ANAPC11 D4S234E RPS4X TALDO1 CCDC85B UBE2QL1 SERF2 HK1 STRAP PHB TBCB EPS15 SLC38A1 DCLK1 OAT SSBP3 PDE1C FABP5 PCDH17 RPS26 NPTN OPCML MORF4L1 ARF1 PRKAR1A FGF12 NAP1L2 KCNA2 KLC1 PEG10 NCEH1 GABARAPL1 SLC39A10 GLRA3 C19ORF43 GUK1 KMO ALDOA PCDH8 CTNNA2 SYNPO KIF1A CA10 SRD5A1 VAPB HSPA8 TUBA4A DLD KIF21A KCNAB1 PRKCE SRP14 PHYHIPL EDF1 C1ORF233 RAN CHST8 KCNV1 RPL35 OPA1 NIPA1 PCMT1 TMEM117 CSDE1 ALDOC SIRPA TCEAL2 PEBP1 TPI1 SPARCL1 MAP2K1 FAM219A CDK5R2 SYNGR1 PPP2CA PGK1 MAP2K2 ITFG1 FKBP8 NGEF SKP1 PRKACB SYN2 LMO3 RBX1 CRIM1 ETS2 MTATP6P1 ADSS LANCL1 YWHAQ RPS19BP1 DIRAS1 FXYD6 FNDC4 UHMK1 TMSB10 CBX6 TMOD2 SRGN ATP6V1C1 MAGED1 TUBA1A ZBTB18 TMEM130 SDCBP FBXO2 COX7B CLSTN1 GPX4 VDAC1 AK5 THY1 SNCA WSB2 KCNH5 TLN2 CNTN1 SNCG CARTPT SLC12A5 ATP6V1G2 CAMK2D OXR1 MLLT11 PRKAR1B ATP6V0C TUBB3 RP11-20I23.1 PCDHGA10 PCDHGA6 PCDHGA5 PCDHA4 PCDHA10 PCDHA9 PCDHAC1\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "pyramidal neuron" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: RTN1 SYT1 ATP1B1 SNAP25 HSP90AA1 MT-CO2 TUBB2A VSNL1 CALM1 OLFM1 CALM2 TMSB10 GOT1 APLP1 MT-CO1 ARPP19 CTSD THY1 SH3GL2 GAPDH TUBA1B TSPYL1 PEBP1 CHN1 TUBB4A NRGN ACTB NAT8L SEPW1 APLP2 MT-ND2 CLSTN1 MT-ND4 PRNP ATP6V1B2 YWHAG MAP1B WBP2 ARL8B SERPINI1 RTN3 NELL2 ZFAND5 TOMM20 BEX2 UCHL1 KCNC2 SULT4A1 ATP5B NRN1 PCMT1 PI4KA APP CLSTN2 PGAM1 NPTXR EIF4A2 SCAMP5 SARAF KLHDC3 NAPA C11ORF31 MT-ATP6 TMEM59L TUBB4B CKB TMSB4X CHP1 POMP NDUFAF3 CADM2 ATP6AP2 NCDN CMAS YWHAZ HSP90AB1 ATP2A2 GSTP1 CCT5 MT-ND3 BASP1 GPM6A MT-CYB ENO1 UBE2N GDI1 NAP1L2 STMN1 ENC1 NEFL COX7C FXYD6 PLD3 ATP1A1 HEY1 CAP2 TBCB INA PPIA EDIL3 SNCA BRK1 RPL8 PSD3 EIF4G2 KIAA1045 FTH1 CDC37 CLU TM2D3 RAN RGS4 MTATP6P1 PITPNA ITM2B UQCR10 DPP6 CIAPIN1 NDN BEX1 PGRMC1 PPP1CB FBXL15 ATP9A CADM3 MAPK1 PIK3R1 ID2 FARSA MT-CO3 CAMK2D RP11-195F19.5 UBQLN2 BSN ARL2BP CPE GSK3A SNAP91 ARHGDIG FKBP8 PTPRS STXBP1 ATP6V1A COX4I1 TUBA1A CERS6 ROBO2 RPL21 LDOC1 NDUFS6 RPS2 NAPB DPYSL2 PTK2B NDUFV1 VAT1L GUK1 PRDX2 TCEAL5 TSPYL4 RP11-20I23.1 COX7B MTCH1 ACTG1 TCEAL2 SERINC3 GNAQ GABARAPL2 TOMM7 C19ORF70 TAGLN3 NDFIP1 RPS28 PSAP HNRNPH2 TMEM14A RXFP1 CHL1 DNAJA1 LINC00116 MIEN1 LMBRD2 RABAC1 CREG2 LPPR4 RTN4R SNN SYT11 MTPN DYNC1I1 VAPB IFI6 HAPLN4 MYEOV2 NAA38 C12ORF49 PTPN20A ATP5I PPP2R2B REEP5 PPP2CB PJA2 NDUFA4 NDUFC2 DNAJB6 S100A13 NDUFA8 ATOX1 YWHAH TMTC1 TMEM130 ATP5A1 EIF1 KCNA1 MORF4L2 NDRG3 MT-ND1 SLC17A7 RPL13 ATP1A3 SUB1 USMG5 TCEB2 ATP6V0D1 RAB6B NAP1L3 MBOAT7 DNAJC5 SLC9A6 CAPZB MAP1A SNRPN NECAB1 NPTX1 EDF1 JAKMIP1 ATP5J2 NCALD NBL1 TPGS2 STK39 MMP24-AS1 STMN2 FASN OXR1 CALM3 CNTN1 ELAVL2 PPP2R4 TGOLN2 AP2M1 NGEF RTN4 GAP43 COX6A1 SLC22A17 COX8A ACOT7 NDUFB7 COX5A TPPP PCSK1N PCDH19 GPX4 NDUFA1 YWHAB MZT1 FBXL16 SCN3B RASGRF1 TRHDE NUDT4 SLC6A17 CX3CL1 MFN2 PNMAL1 EFR3A LANCL1 TMA7 PREPL MAP2K4 STX1B STMN4 HINT1 MTRNR2L1 LMO4 EIF1AX OAT RFK RAP1GAP2 RAB27B RPS27A ATP6V1E1 SLC24A2 PPM1A TALDO1 PRKCE ATP6V0B CABP1 FTL NDUFC1 AK5 SEZ6L2 GRIN2A SYN1 CAPZA2 SNCB SPR MPC2 CAB39 FBXO2 MRPL47 SYNJ1 FAM163B PSMC1 MAGEH1 SYN2 RPL23A SCOC EGR3 ATP6V0C AP2B1 ALDOA DNER MAPRE3 ZNF365 PPP3CA MYL6 MDH1 MGST3 FSTL5 HPCA TUBB3 GABARAP IDS MIF NSF PET100 ATP6V1G2\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "pyramidal neuron" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MT-CO3 MT-CO1 MT-CO2 CCK MT-ATP6 SYT1 CALM1 YWHAG TMSB4X THY1 NEFL PSAP STMN2 CADM2 MORF4L1 MT-ND4 SYN1 PREPL VSNL1 MT-ND3 MT-ND2 HSP90AB1 MAP1B ENC1 GAPDH GPM6A MTCH1 TSPYL1 APLP2 RTN1 ACTB NDFIP1 CLU APP SLC9A6 CLTC RPL13A COX7C SYT11 SNAP25 EIF1AX PRKACB EPS15 FAT3 FAM134A SARAF ITM2B OLFM1 CALM3 PGM2L1 ISCA1 GUK1 DYNLL1 TMEM150C PLD3 WBP2 MTRNR2L12 CDKN2D RTN3 GABARAPL2 APLP1 PSD3 FAM84A RTN4 DNAJB6 ATP2A2 LGALS1 PNMA2 MTATP6P1 ATP6V0E2 ATP5J SAP18 SEPT4 GNAQ ATP5E CA10 CRIP2 TMEM155 MAGEL2 RNASEK-C17ORF49 ATP6V1A PPDPF PINK1 SH3GL2 C1ORF52 DPYSL2 ATP6V0D1 DYNLT3 CST3 RAP1GDS1 SERPINF1 PIK3R1 PHYHIP CLTB MRPL51 ENO2 DYNLL2 LDOC1L C16ORF13 MAP7D1 MAP1LC3A NRSN2 HMGCS1 RAB6A SCN3B WDR47 TRAPPC1 SUB1 YWHAQ ONECUT2 SNCB FTL DIRAS1 LMO3 PRNP KIF5A SLIT1 TSPAN7 ATP1B1 SLC30A3 FXYD6 ELMO1 NUDT21 ITFG1 NRGN UQCR10 UBB OCIAD1 ASAP1 CAPZA2 SSTR2 WSB2 PLEKHF1 PPP2CB PJA2 PKM HDLBP IPCEF1 NCAM2 MYL12B NEUROD2 USP5 GUCY1B3 AP3S1 HIGD1A BSG ENSA B3GNT1 SOD1 LYNX1 SYT4 COX4I1 ELAVL2 SELT SNRPE ELAVL4 RAPGEF5 NFE2L1 REEP5 AP1S1 UQCRB ARHGDIG RPS6 OAT TBCB PNMAL1 MAP2K1 CNTN1 HSP90AA1 NDRG4 GABRA1 TESPA1 GDA HINT1 KIAA1045 NDUFA1 RHEB ZMAT2 NMNAT2 NEFM TRPT1 TERF2IP SPARCL1 PEX5L ARL8A RAB40B BANF1 CTNND2 KCNK1 NDUFA4 SLC17A7 AP2B1 CKB VAMP2 CMAS NEFH BNIP3 CADPS2 ATP5A1 HDDC2 RPS5 FAIM2 YWHAH PTPRS NECAB1 GTF3A ATP6V1E1 LINGO1 JUND SV2B TMEM147 NAP1L2 RHOB SNCG UBE2E3 YIPF1 C19ORF43 NRCAM TPRG1L TSC22D1 TOLLIP RASGRP1 CHN1 FNDC4 BEX2 PRKAR1B ATP1A3 HPRT1 KLHDC3 DNAJA1 ATP5C1 SERPINI1 GNB1 CFL1 TMEM59L AP2S1 RCAN2 SPARC TUBA1B PLCB1 CAP2 PIN1 CA11 KLC1 PRKCB ANAPC11 ARF1 TPT1 SYNJ1 RBX1 SNX3 ADAM23 ESYT1 GRINA PCMT1 KCNMB4 PPP2R4 TMEM130 NDUFB1 PSMD8 TKT PPP1R7 FIGN PPP3CA TCEA2 ATP5F1 PPP1CB TMA7 CREG2 MBOAT7 SH3BGRL2 TOMM20 RPL32 PGAM1 AP2M1 EFR3A RPS3A FTH1 CDK5R2 FRZB RPL37A LMO4 YWHAB PPIA TBR1 GDI1 SEC61G RAMP1 LGI3 UHMK1 SUMO3 NTHL1 SIRPA PPM1A MAPK1 CLIP2 MAST3 NDFIP2 ATP6V1G1 TUBB2A HAPLN4 NREP RPL3 RPS28 ATP6V0C C11ORF31 MIF ALDOA RP11-20I23.1 NSF RP11-219A15.1 RPS10 TBC1D15 DNAJC21\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "pyramidal neuron" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: SYT1 HSP90AA1 RTN1 SPARCL1 YWHAG MT-CO2 TSPAN7 CLU TUBA1B CLSTN1 SNAP25 PLD3 NGFRAP1 MT-ND2 CHN1 CALM2 CPE MT-CO1 ARL6IP1 UCHL1 ATP6V1B2 TMSB4X TMSB10 DKK3 ATP1A3 YWHAB CALM3 SERINC1 EIF4A2 ITFG1 DPP6 KLC1 ENC1 PRNP TUBA1A NCAM2 CALM1 SPOCK1 MT-ATP6 CLTC HSPA4 ATP6AP2 GAPDH NELL2 PIN1 TSPYL1 ATP1A1 TPT1 HPCA SARAF MAP4 EIF4G2 SCD5 CCDC25 VSNL1 NRGN APLP1 RTN4 NDUFA13 ACTB NDUFA5 CNTN1 GPM6A LSM4 APP EPDR1 MDH1 WASL ATP6V1A MAP2K1 STXBP1 PKM CHL1 UQCRC2 MT-ND3 SCN3B DNAJB6 CFL1 PREPL NRCAM COX7C MAP1B ENO1 GDI1 SLIT1 TUBA4A NRN1 SERPINI1 NDUFB8 HMP19 NAT8L SCAMP5 NSF CAP2 ARPP19 RHBDD2 RPL38 TGOLN2 NFE2L1 TMEM14A MT-ND4 IDS RNASEK-C17ORF49 ANO3 FXYD6 BSG PRKAR1B DPYSL2 CDC42SE2 ARL8A COX7A2 GAP43 C19ORF70 MGST3 SNX10 SEMA3A HSPBP1 CDK5R2 GABARAPL2 SUMO2 BEX1 RPL36A YWHAH WFS1 NEFL FAM3C ATP1B1 BEX5 EFR3A ETV1 SYNGR3 UBE2E3 TMEM160 PACSIN1 SMYD2 SV2B NPTX1 EID1 LMBRD2 PCSK1 SRP14 IPCEF1 SYT11 RPL39 CDK5R1 ATP6V1E1 HS3ST2 NXPH3 MT-CYB SOD1 COQ10B ATP5F1 TMEM230 NRIP3 YAF2 CCDC85B UBE2F UQCRQ CAB39 COX4I1 AP2S1 AP2M1 FSTL5 WSB2 USMG5 COX6C DNAJC6 GRIN2A SNAP91 UBE2N TUBB2A PGRMC1 ATP9A ENSA SUMO3 PHYHIP LMO4 MRPL11 SLIT3 CCT5 CAPZA2 SERPINE2 BCAP31 TMEM155 CA10 PID1 COA3 FAM219A PPP3CA ITM2B SCOC PPP1CB MT-CO3 GUCY1A3 ARHGDIA KCNAB2 PGAM1 IQSEC1 SLC39A10 BASP1 TERF2IP ATP5H SCD PPP2CB NPY2R HPS6 PSAP UQCR11 HAPLN4 SLC17A7 SLC1A2 NDUFC1 AK5 SLC24A2 SLC30A3 PGM2L1 MAP2K4 SAP18 CTXN1 C1ORF52 GRIN1 CCK YWHAQ SLC12A5 RPS5 OLA1 GHITM SUSD4 PRKCG SLC9A6 TENM3 NDUFB10 NUTF2 PPP2CA CSDE1 ARL6IP5 PNKD NPTXR PCDH19 VAMP2 STMN1 UBA52 CADM3 PSMC1 NARS DHCR24 ATP2B2 GTF2B STMN4 CLSTN2 TRIM37 ADRA1D SYT5 AP1S1 GABRA1 CAMK2D SNCG ANXA7 EPS15 UBB PTPRT NCEH1 TMEM130 PEG10 PSMB7 SYNPO SEZ6L2 SPOCK2 INPP5F TOLLIP PJA2 CYB5R3 C11ORF31 LINGO1 NOV PTGES3 ATP5J2 NEUROG2 SULT4A1 COX5B STMN2 ATXN10 ATP5G1 NELL1 DYNLL1 RPL15 DIRAS2 ADSS OAZ1 APLP2 ACTR6 PNMA2 ALDOA PEBP4 KIF5A MYL6 MYL12B CYFIP2 NECAB1 MAPK8IP2 ACTG1 PVRL1 PDE1A RHEB STX1A PRKACB GUK1 PEF1 MPC2 SQLE FTH1 PRKAR1A LIMK1 MTATP6P1 ST20 CFL2 OLFM1 PPIA BEX2 C18ORF32 PTPRN SCG2 MIR6723 BSCL2 MIEN1 NDUFB1 BNIP3 UROS KIF1A TMEM59L MT-ND1 AP1S2 GABARAP ATP6V0C LDHB TUBB TUBB3 RPL13A RPL21 APOLD1 ARF5 ATP6V1G2 RP11-20I23.1 PCDHAC1 PCDHA9 PCDHA10 PCDHA4 PCDHGA5 PCDHGA10 PCDHGA6\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "pyramidal neuron" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MT-CO2 MT-CO1 MT-ND4 MT-CO3 SNAP25 SYT1 CALM2 MAP1B MT-ND3 GDA FTH1 PSD3 CALM1 MT-ATP6 TUBA1B IDS ATP1A1 LMO3 GPM6A YWHAH SYT13 EPS15 GNG3 MT-CYB UBA52 VAMP2 CLSTN1 CALM3 MT-ND2 OLFM1 RGS4 MTCH1 SUB1 PPP3CA SLC39A10 CLU ATP1B1 PPIA CHN1 CBX6 GNB1 MAPK1 LINC00086 RTN4 TBC1D15 MTRNR2L1 PRKAR1A ATP5G1 PRDX2 PRKACB SNCA GAPDH ATP2A2 DYNLL1 ELMO1 MT-ND1 PRKCB GNAQ OPA1 PRNP NDUFC2 SV2B MTRNR2L8 NDRG4 ZBTB18 MAST3 COX6A1 CCK HSP90AA1 NRGN ACTG1 KIF1A BNIP3 CDK5R1 NAT8L LMBRD2 STX1B TBCB DYNLT3 CADM2 OAZ1 MRPS21 VSNL1 LMO4 RAB6A PLCB1 ARL6IP1 HSP90AB1 MTRNR2L12 SCN1B AP2M1 GABARAPL2 MTATP6P1 RNF11 SNX10 NAPB RNASEK-C17ORF49 REPS2 GUCY1A3 TRIM37 TCEA2 PITHD1 STK24 NAPA ATP6V1A MYRIP SLC22A17 PPP2R2B ITM2C HDLBP MAGED1 GLRA3 RAP2A CTNND2 ATP6V0C ATP5B DYNLRB1 SERPINI1 ITFG1 RAB3C ATP2B2 NDUFS5 ATP6V1B2 NCAM2 CCDC184 VEGFA NECAB1 HMGCR PSMD8 NEFM BEX1 DIRAS2 UBL5 ENC1 ARL6IP5 NME1 RPL41 RP11-20I23.1 RAB40B SYN2 DYNLL2 MAP4 NEFH PJA2 CERS6 RBX1 SCN5A PPP2R2C SNRPN RIT2 STMN4 SYT11 COX7A2L TEX2 ATP5H CMAS POLR2I SH3BGRL2 TGOLN2 UHMK1 PTK2B SERPINE2 TUBB2A ATP6V1C1 NDUFV1 FAIM2 RPL13 MAP2K4 TMEM150C CISD1 CSDE1 WBP11 ATG101 CBLN4 SNAP91 PITPNA STMN2 ANAPC13 USMG5 PFDN1 EGR3 B3GNT1 MRAS RAN SPARCL1 CREG2 MTPN NPTXR FBXL15 TPI1 NUDT21 UBE2N EIF1 RHOB FAT3 AP3S1 MT-ND4L BAG4 KLC1 DNAJA1 RTN1 LIMK1 TSPAN7 AURKAIP1 CDC42SE2 RORB FAM19A1 GNG2 NHP2 SEZ6L MAP1A SERINC3 ATP6AP2 STXBP1 CLIP2 COX6C VGF RAPGEF5 PCMT1 NRIP3 DCC PCDH19 PTMA CABP1 LPPR4 FARSA PTPRS ZFAND5 REEP5 SUMO3 PPP3R1 TRAPPC1 TSC22D1 DPYSL2 KCNV1 CX3CL1 ID2 YWHAG RABAC1 KIAA1045 ADSS LHX6 DNAJC6 KCNAB1 RHEB CLTC RASGRF1 RTN3 HCN1 RPL38 RPL23A SYT4 CST3 NDUFA5 GRIN1 IQSEC1 SPTBN1 C1ORF115 RPL31 ACTB TMSB10 ADAM23 PPP1CB MRPL37 ASAP1 PEBP1 KIF21A CTSD COPS8 ATP1A3 TMOD2 ARPP19 SNN DLC1 DMTN CHGB ENKUR PSMD12 CNR1 TMSB4X MORF4L1 LYNX1 HINT1 C1QBP SARAF SSBP3 RPS15 EFHD2 UBA1 EID1 PI4KA LANCL1 PIK3R1 TMEM14A RPS4X COX6B1 ANO3 CFL1 YWHAZ SCD5 TSPYL1 TMX4 YWHAB BRK1 ITM2B STMN3 NDFIP1 TRIM36 NUAK1 PFKP B2M PVALB MIF ALDOA NSF MTRNR2L6 RPL13A C11ORF31 PCDHGA5 PCDHGA6 PCDHGA10 PCDHA9 PCDHAC1 PCDHA10 PCDHA4\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "pyramidal neuron" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MT-CO1 CHN1 MT-CO2 MT-CO3 SNAP25 MT-ATP6 GPM6A SYT1 NRGN MT-ND3 CALM1 MAP1B RTN1 SCN3B GNAQ ENC1 MT-ND1 PRNP RTN4 CALM2 RTN3 TSPAN7 CAP2 CLU PSD3 MTRNR2L12 ATP1B1 MT-ND4 PSAP SPARCL1 ATP6V0B DIRAS2 SEPW1 PJA2 ATP6V1B2 YWHAG KIF5A ATP1A3 BASP1 B3GALT2 PREPL DPYSL2 MT-ND2 PPP2R2C MAPK1 DYNLL1 AK5 MAST3 EIF4A2 MTRNR2L1 SLC17A7 TUBA1B ITM2B EFR3A PTMA SERINC1 ATP6V0C RP11-20I23.1 IDS ATP6AP1 UQCRH PGM2L1 ATP2A2 HSP90AB1 ATP1A1 ENO2 PGAM1 PLD3 ATP2B2 ACTB CYFIP2 RAB3A ATP5I RPS28 PKM RAP1GAP2 VDAC1 ITFG1 NEGR1 APP SV2B OLA1 PPP3CB PPP3R1 CAMK2D THY1 PDP1 MAP4 CKB MTRNR2L8 STXBP1 COX4I1 NFIA SARAF TLE4 TSPYL1 SERF2 ALDOA PRKCB SEMA3C FAM198B KLC1 RGS4 SYN1 PEBP1 SLC8A2 APLP1 GDI1 C1ORF115 SUB1 NELL2 SCAMP5 MAGED1 CLSTN1 CDK5R1 TM2D3 EIF1 SLC25A6 CTGF PRKACB PRKAR1A NDRG3 OLFM1 TMEM59L CTD-2026G6.3 CDH24 KCNAB2 PHYHIP HSP90AA1 MTCH1 VSNL1 SUMO3 MDGA1 MAOB TUBA1A TMOD2 RFK GHITM TBCB GRIK3 CALM3 RASGRF2 YWHAZ CAMK2G PTPRN TMEM130 RBX1 UBE2QL1 BNIP3 PLCB1 FAIM2 RAB6B SYN2 NIPA1 PSMC3 AP2B1 DGUOK ACTG1 GRIN2A TSPYL5 ARPP19 MAPRE2 SCG2 COX6A1 NPTX1 GPX4 SYT11 NGFRAP1 NDUFV1 CAMK4 LPPR4 BSG AP2M1 NDRG4 HK1 MTRNR2L6 SPOCK2 RASGRF1 MAP1LC3B GPR158 SYT3 CYC1 SULT4A1 REPS2 HOMER1 ATP6V1E1 NUAK1 SLC22A17 GLO1 ATP1B2 TSC22D1 PPIA COPE COX5B SPRYD3 RPL37A ETV1 PFN2 FSCN1 AP1S1 CDK5R2 PVRL1 CBLN1 SYNPO KCTD12 RAB2A ELAVL4 NDUFA8 GOT1 NRIP3 RAPGEF5 DSTN GSK3A SNN OXCT1 EFHD2 UBE2M CMAS LYNX1 BAI2 SNCG RP11-111M22.2 TMSB4X PRKAR1B TMEM117 SYNGR3 NNAT CX3CL1 ASAP2 RLIM HS6ST2 ALDOC DNAJC5 KCNC2 PDE1A LMO3 ARF1 PPP1R9B MORF4L2 CPNE4 PTHLH CPLX2 LDHB CLTB SPTBN1 YIPF1 DYNLRB1 RPL11 GABRA1 ISCA1 BCAT1 YWHAB SLC9A6 MAP2K2 SYT5 STMN2 KCNV1 RPS3A TMSB4XP4 REEP5 OLFML2B CPE FBXL16 CISD1 CBX6 RPL38 FAM149B1 CCDC85B MTATP6P1 UROD CLSTN2 CETN2 STK24 HS3ST4 SNAP91 POLR2M ARHGAP35 IPCEF1 SRP14 PNMA2 TUBB2A TCEAL7 NCOA4 VWC2L SNCA SELT DYNLL2 MT-ND5 ANXA6 PET100 FAM162B ATP5C1 KIF1A DEXI ZBTB18 ACTR10 NEFL MYZAP BCAP31 TSPYL4 ATP5A1 ATP6V1A SNRPN CRTAC1 FKBP1A TCEAL2 TBC1D15 C9ORF16 MTPN NPTN PCBP1 ATP6AP2 OXR1 TBR1 MRFAP1 C6ORF1 GFRA2 COPRS SMIM13 PFKP CABP1 C14ORF132 GABRA5 ENO1 SSTR2 RPL15 NAP1L3 PRKCG LZTS1 SERPINI1 ERH PGK1 SLC12A5 SYT4 PCMT1 PNMAL2 SLITRK1 ATP6V0D1 MAP1LC3A DNM3 UQCR10 RPL21 VAMP2 TMA7 ARHGDIG RAB6A ANXA7 PCDH17 PTPRN2 LANCL1 ATP6V1C1 USP5 ETFB TMTC1 MPPED1 PGRMC1 SPRN CCK SERPINE2 EPHB6 SNCB PPP3CA MCHR2 FGF12 OPCML CTNND2 NDUFS5 PITPNA CADM2 CDH8 CLIP3 FKBP4 LMBRD2 ARL6IP1 RCAN2 GSKIP APLP2 STMN3 STMN1 IMMP1L UQCR11 NDUFC1 UCHL1 C11ORF31 DCLK1 INPP5F NAPA PTK2B DKK3 ARL6IP5 PHYHIPL UQCRC2 FAM174A UBA1 ELMO1 VWA1 VDAC2 MT-CYB PEA15 NDUFS6 LGI3 VAPB SCD5 CTXN1 RRAGA ATP5G2 BRK1 CAB39 SLC6A17 RBM20 INSIG1 TPI1 CREG2 TMSB10 TKT KRAS DRAP1 RAD23B AP2S1 TAGLN3 OAT GUCY1B3 CORO2B MYEOV2 MMD PSMC5 NDUFB10 NINJ1 SEZ6L2 RPS4X TOMM20 C2ORF80 ZFAND5 PPP2CB RNASEK-C17ORF49 TUBB3 ARF5 NGRN PCDHA4 PCDHA9 PCDHAC1 PCDHA10 PCDHGA6 PCDHGA10 PCDHGA5\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "pyramidal neuron" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MT-CO1 MT-ND2 MT-ND4 MT-CO3 MT-CO2 MT-ATP6 SNAP25 CALM1 ENC1 ATP1B1 MAP1B FTH1 MTRNR2L1 MAP1A SEPW1 SYT1 MTATP6P1 MTRNR2L12 ATP2B2 PPP3CA UHMK1 ACTG1 CALM2 SPARCL1 MT-CYB BSN LMO4 PAK1 NUAK1 PNMA2 CKB CALM3 GABRA1 MT-ND4L LDHB NRGN TMSB10 NRN1 GRIN1 ATP9A OLFM1 RTN1 SYT4 TOMM20 SCN3B SUMO3 MT-ND1 MAPK1 GNB1 KIF21A PFKP STMN1 NPTXR GNG2 SLC38A1 REEP2 GNAQ HMGCR TSPAN33 RPL12 SNCA PRKCG PHYHIP RBX1 TRIM37 MTPN ENSA ZBTB18 CHN1 RAB11A GRIN2A UBE2V2 KIF5A NDRG4 MT3 NHP2L1 RGS4 SLC39A10 CREG2 CHL1 STMN2 NECAB1 PSD3 TMEM258 SYNGR3 TSPYL1 YWHAH SPOCK2 CLTC PEX5L TMSB4X NAP1L2 MORF4L1 APP MTRNR2L6 ATP6V0D1 HSP90AB1 ELMO1 PPP1R7 SLC30A3 THBS4 OLA1 RHOB RTN3 COX6A1 VAMP2 NEFL GOT1 NDN DIRAS2 PAFAH1B2 PACSIN1 KCNMB4 SPTBN1 PCDHA10 CD59 SERPINI1 CAP2 IDH3A SEZ6L ATP1A1 ARF1 TOMM70A GPM6A HN1 SLC17A7 MAP2K1 SPHKAP CLEC2L GUCY1B3 CD99L2 ARF3 NCALD SERPINE2 CA11 KCNA2 TIMP2 NGFRAP1 SH3BGRL3 BASP1 DNM3 GDI1 EIF1 PCSK1N STX1A ATP6AP2 TPD52 NEGR1 PIK3R1 NSF TEX2 RTN4 AES SLC25A22 UBQLN2 CTXN1 SCAMP5 RASGRF2 TCEB2 TSC22D1 SKP1 UBB GSTO1 SRP9 UBA52 ARFGAP2 NPAS3 RPL18A CNTN1 PINK1 EXTL2 KRAS EIF4G2 WASF1 GPX4 UBA1 EDIL3 UQCR11 PGRMC1 WDR47 NRCAM HS6ST3 CIAPIN1 MFSD6 PNMAL2 UQCR10 SNAP91 RPS2 THY1 VDAC2 KIF1A NDUFC2 SPRYD3 CPLX1 GUK1 FASN ZNF365 UQCRH COX6C BEX4 PRKCB PAQR8 RPS19BP1 AP1S2 DMTN INPP5F RPS15 AP2M1 RPS6 NCOA4 FKBP1A PDP1 DCLK1 RPL37A PPDPF KIAA1045 RPS28 FKBP8 TRIM36 PGM2L1 STK24 CDK5R2 DNAJA1 FAM131B IMMP1L VPS35 ITM2B NDUFA13 RAB27B MGST3 LDB2 ARPP19 OXR1 UBL4A FAM174A RAPGEF5 SLC9A6 RHEB ENO2 SULT4A1 FABP3 PLD3 SERINC3 SNCG ANXA7 DCTN1 PPP3CB FAIM2 C19ORF10 TPPP MT-ND3 FBXL16 MAP7D2 APLP1 FAM19A2 DSTN DYNLL2 CLTA ISCA1 SNX3 GSK3A AK5 DBNDD1 PTPRN KLC1 NDUFB1 YWHAZ ARHGAP35 PTMA MDH1 TBCB CCK IDS ATP6V1E1 PRKCE SGCD ZFAND5 EID1 PHB PRKACB COA3 TCEAL3 DDN UQCRB DPP6 SEZ6L2 MARCKS PPP2R1A RCAN2 ACLY TUBA4A KLF10 MTRNR2L8 SH3GL2 SPOCK1 LINGO1 TMEM150C NGRN TPT1 ATP6V1A PPP2R2C DGAT2 RAN CDH8 RAP2A CRIP2 CADM2 SLC12A5 OAZ1 CMAS NAPB SGK223 TUBB ALDOA ATP6V1G2 PCDHGA6 PCDHGA10 PCDHGA5\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "pyramidal neuron" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: CALM2 MT-CO1 CCK SYT1 MT-CO3 CLU MT-ND4 MT-CO2 GAPDH ATP1B1 TUBA1B VSNL1 MAP1B ARL6IP1 NRGN RTN1 APP PREPL MT-CYB RTN3 HSP90AB1 CLSTN1 PPIA MT-ND1 SNAP25 PKM ARPP19 FTH1 OXR1 CALM3 CALM1 RTN4 ACTB LMO4 STMN1 PEBP1 HSP90AA1 CKB RNF11 GABRA1 TSPYL1 DYNLL1 SPOCK1 NEFL NAPB TUBB2A MT-ATP6 TPI1 CHN1 OAZ1 PPP3CA NECAB1 FAIM2 CFL1 PRKAR1A PRKACB SNX10 COX4I1 TMSB10 ENC1 ACTG1 MTRNR2L12 COX7B MLLT11 CLTC GDI1 STXBP1 BEX1 VAMP2 TMSB4X YWHAB SNRPN RAB3A ATP6V0C NRCAM UQCRH CA10 RAB6B MFSD6 SNX3 DNAJC6 MTRNR2L8 FXYD6 TAGLN3 CRYM BNIP3 OLFM1 ATP5B CEND1 MAP1LC3A PGAM1 RP11-20I23.1 PRNP ATP6V0E2 ITM2C SYT4 PPP3CB UCHL1 GPX3 SERINC3 UBL5 GOT1 PGRMC1 KIF5A LGALS1 EIF4A2 RHBDD2 AP2B1 TUBA4A HAPLN4 ENO2 CA11 SPARCL1 RPL15 PPP2R1A THY1 APLP2 SEPW1 TSPAN7 ISCU PPP2CA COX6B1 MAP4 ATP1A3 MDH1 ARF5 COX6A1 NDUFS5 NNAT NAP1L2 EIF1 PSD3 DPYSL2 TUBB4A PJA2 DKK3 ALDOC RAB2A TSC22D1 YWHAG YWHAZ MT-ND3 EPHB6 GPM6A LAGE3 HIGD1A ATP5G3 KLC1 SOD1 SLC17A7 GRIN1 NDFIP1 AP2M1 YWHAH NDRG4 GUCY1B3 CDC42SE2 GRIN2A GABRA5 NELL2 MTRNR2L1 MAGED1 DYNLRB1 PNMA2 CADM2 UBE2N NGFRAP1 NMNAT2 EIF1AX SCN3B SLC12A5 IDS MIF PSAP GDE1 RPH3A COX6C YDJC SPRYD3 TXN KIF3C SNAP91 MRFAP1 FBXL15 UQCRC2 IQSEC1 ASPDH CABP1 MORF4L1 ATP6V1C1 SCD5 PLCB1 VAMP1 RLIM PSMB7 IDI1 ATP5J MAPRE3 ITFG1 ARL4C ATP6V1B2 GNG3 NAPA SEZ6L PTK2B MAP1A NUDT4 EIF1B KCNC2 PGK1 RNASEK-C17ORF49 C4ORF3 PRDX2 STMN2 ATRN SYT5 GAP43 SYT11 PPP2CB SARAF ACTR10 BRK1 FGF12 TERF2IP SYT13 RPL35 CAMK2G UBE2QL1 INPP5F CTSD RHEB UQCRB FKBP8 RABAC1 INSIG1 SCN1B KLC2 ITM2B C14ORF2 SLC38A1 PEX5L FKBP1A MYL6B NSF RPL31 MAP2K4 MT-ND2 CTNND2 UBE2E3 RPL41 RANBP1 SNCA VPS35 SLC22A17 RAB6A PDP1 SUMO2 NARS CPE MRPS21 CNTN1 NAP1L5 CADM3 EIF4G2 SLC39A10 PDE1A INA TCEAL7 SERINC1 ATP5A1 PSMB3 NDUFC1 SKP1 SCG2 HMP19 NDUFA13 FAM127A CHL1 BCAP31 SYN1 PSMD8 NUAK1 UQCR11 ATP1A1 SELM D4S234E PFN2 VDAC1 CAB39 CDH8 DNM3 NCALD TM2D3 SLC25A5 BSN COX5B PPP1R9B BASP1 TUBA1A STMN4 OST4 PRKCB GPX4 RRAGA ATP5C1 TPRG1L RPS28 SRP14 SERPINI1 PRKAR1B SYNPR FIBP STMN3 TMEM130 ATP5I CAP2 UBA1 ALDOA ARF1 COX8A NFE2L1 DUSP6 C12ORF49 NDUFA11 IGSF21 GNB1 AP1S2 MSMO1 TAGLN2 ATP6V1A FKBP4 SYNPO B3GALT2 HSPA8 FARSA RAD23B CAPZA2 C1ORF52 TMEM141 ADD2 COL5A2 TSPYL5 ARL1 SSBP3 CCT5 NCOA4 PPDPF CAPZB OPCML PRDX1 UBC SLC8A2 DEXI NGEF LINC00086 ZNF425 CLDND1 CSDE1 CBX6 CDK14 EFHD2 BEX2 NBL1 COPS7A GSK3A ETS2 DCLK1 C2ORF80 AP2S1 MAST3 LYNX1 STXBP6 FSTL5 NDUFA12 VDAC2 FAM3C GSKIP TPT1 DIRAS1 JUND AGT ATP2A2 NGB MRPL52 CISD1 BTBD1 JAKMIP1 ATP5E SMAP2 ATP6V1F DBNDD1 FBXO2 DMTN PIN1 CDH22 LMO3 PARM1 EXTL2 SMIM12 RPL37A AKAP12 ARL8A DNAJA1 HPCA PDE1C KCNA2 RBX1 ATP5O RGS4 ENSA PTPRN ESYT1 NWD2 PRUNE2 S100A6 RCAN2 NDUFA1 PHPT1 SCAMP5 APEH RPS27A SH3GL2 RPL11 SLC19A1 RPL13A EPB41L3 RPL17-C18ORF32 PGM2L1 RPL18A MCHR2 COX7A2 COA3 FJX1 MAPK8IP2 OCIAD1 DIRAS2 FAM131B COPRS SPCS2 RTN4R NDUFV1 DHCR24 HOMER1 NEGR1 SLC9A6 NDFIP2 MORN2 ATP2B2 PFKP NDRG2 CAMK2N2 COPG1 SERF2 CYB5R3 SAP18 PFDN1 RPL6 PPP2R4 STK24 GRINA RORB CREG2 C9ORF16 RPL39 NPTX1 FILIP1L WASL TMEM230 CD59 NAT8L VDAC3 PTPN20A GHITM MORF4L2 MTRNR2L6 MBP NPTXR PPP1CB COX7A1 SLC25A11 C1D RPL7 DSTN MED10 RAB5C REPS2 NIPA1 CORO2B NEUROD6 PHYHIPL LHX6 MPI CERS6 CCDC184 SYN2 NEUROD2 TMEM120A ATG101 FSCN1 RAB11FIP5 SLC25A4 PHYHIP HTR2A PNMAL2 MIEN1 ID2 KCNF1 NDUFC2 ZFAND5 NDUFA5 GPR37 BAG4 SELT CDK5R2 ATP6V0B C1ORF233 TUBB3 CHP1 FIS1 NGRN TBCB NOP10 ATP9A SYNJ1 CDHR1 SYT10 CDKN2D UBE2D2 SEZ6L2 NDUFB7 CHMP5 COMMD6 PSMB5 PSMC1 RAP2C BSCL2 CLIP3 CHCHD2 MGST3 PIK3R1 TRIM37 PPP1R7 NDUFA4 RAB4A KIF1A ATP6V1E1 H2AFZ DNAJC4 CRIP2 NCEH1 TBCA YIPF3 LIMK1 CAMK2D SH3BGRL2 MANBAL BAI2 GPCPD1 GRM3 ATP6V0D1 NDUFAF3 NRSN2 ETV1 CLTB NRIP3 LDB2 CYCS NDUFB11 ATP5G2 TMEM14A ARL6IP5 ACOT7 TCEAL3 HK1 LPPR4 ANXA6 SNX17 C19ORF53 EID1 SUB1 ATP6AP1 RAB11A RAMP1 USP5 MTATP6P1 ARPC5L RAB31 NEFM MAL2 NDUFAB1 MYEOV2 GNAQ RHOB EPS15 ATP6AP2 SCOC HSD17B6 RPS6 ELAVL4 PSMD2 ELAVL2 SLITRK1 FAM84A TCEB2 TCEB1 NTNG1 SPOCK2 ABHD14A PNMAL1 EPDR1 GLRA3 C19ORF70 PSMD12 CAMKK2 PTGES3 HS6ST2 CDK17 RPL17 ARL8B EDF1 CBLN4 TRIM47 MLF2 NCDN SNCG RASSF3 SSTR1 PAK1 PFDN4 COPE NDUFB8 PLD3 RASGRF1 TMEM35 FBXW11 SNN KIFAP3 RPL13 TPPP ATP6V1G1 SNRPE LSM4 IPCEF1 FAM219A ARHGDIA RPL38 OPA1 NAA38 RP11-219A15.1 RPL36A ATP6V1G2 RPL21 DNAJC21 TBC1D15 PCDHGA10 PCDHGA5 PCDHGA6\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "pyramidal neuron" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MT-CO3 MT-CO1 MAP1B MT-CO2 SYT1 MT-ATP6 SNAP25 CHN1 MT-ND4 VSNL1 YWHAG PREPL MT-ND3 NRGN ENC1 YWHAH TSC22D1 CLU GPM6A TUBA1B MT-ND1 CCK SPARCL1 CALM1 MT-CYB RTN3 RTN4 RTN1 THY1 BASP1 GAPDH PRNP MT-ND2 SNCA TMEM130 CLSTN1 RAB6B ATP1B1 HSP90AB1 PTK2B ATP6V1B2 ACTB SLC22A17 CALM3 MTATP6P1 OLFM1 ARL6IP1 APLP1 NPTN STXBP1 NAPB MAPK1 ATP1A3 VAMP2 PRKCB RGS4 RAB3C GDI1 PGAM1 CALM2 TSPYL1 SH3GL2 AK5 ARHGDIG CREG2 UCHL1 NEFM SARAF TOMM20 GRIN1 NAT8L PKM PPP3CA APP RPL13 AES DPYSL2 RPH3A ELAVL2 NEFL PRKACB EIF1AX CPLX2 NDUFB5 SCAMP5 SPOCK2 PSAP IQSEC1 SLC12A5 ACTG1 PDP1 LDB2 PPP3R1 FAIM2 NUAK1 NDFIP1 MTRNR2L12 RPL35 NECAB1 FTH1 CNTN1 YWHAB CPE LMO4 RPL41 CKB SYNPO CADM3 PPIA CADM2 SERINC1 TSPAN7 RNF11 GRIN2A MGST3 SLC17A7 TMSB4X ARPP19 NGFRAP1 CEND1 SCN1A UQCRH FLOT2 ATP2B2 SYT4 HMP19 INA SV2B STMN2 KCNC2 NSF GDA ATP9A VDAC1 SLIT1 PGRMC1 ARF3 PRKCE MTRNR2L8 ANXA6 CAMKK2 PCDH17 ATP6V1A FTL STMN3 GABARAPL1 SNRPN FXYD6 RAD23B TMX4 NDUFS5 MAPRE3 HIGD1A PGK1 SRP9 TUBA4A CYFIP2 SYT11 PCMT1 PFKP REEP5 KLC1 PHYHIP MDH1 COX5B SERPINI1 CAMK2G NDUFB7 TUBA1A NDUFA11 EID1 RAB3A NEGR1 CCDC85B ARL8B UBE2N YWHAZ UBC MTCH1 NCDN PLCB1 IDS SYNGR1 GUCY1A3 CMPK1 TBR1 ITM2B ERH DYNLL1 SPCS2 PEX5L WSB2 DLD DNAJB6 CYCS ELAVL4 SEZ6L2 ATP6V1E1 SPOCK1 MTRNR2L1 RAP2A TOLLIP OCIAD1 KIF5A PPP2R1A SULT4A1 TMEM14A PJA2 ENO2 DHCR24 PSMD12 VPS35 ELMO1 PRKAR1B PPP2CA GUK1 SKAP2 DYNC1I1 COPG1 MTPN SLC9A6 STX1B SYN1 TEX2 ACP1 VSTM2A CBX6 LYNX1 CMAS DYNLL2 TRIM37 GPRC5B LGI3 LYSMD2 RPS3A PCP4 TMEM151A OXR1 AURKAIP1 ATP2A2 DCLK1 YBEY TPPP GPX4 SEZ6L EIF1 TMEM70 CDK17 PI4KA TSPAN33 GPCPD1 RRM2B CABP1 DYNLRB1 RPS26 MRPL12 MAGEL2 PNKD MBOAT7 CNR1 FAM134A YWHAQ SERPINE2 NAP1L2 PRKCG BLVRB DDN FKBP1A RPL32 ARL4C ETS2 COX7C PEBP1 ATP6V1G1 DPP6 RAPGEF5 KIF2C NDUFB8 AP2M1 WASL ACOT7 CCDC124 CYB5R3 NDUFB1 DKK3 JUND RAB7A FSCN1 CLTA PAK1 DNAJC5 SOSTDC1 EIF4G2 MRPL37 PLD3 HN1 NPTX1 KIF3C MAPK8IP2 PNMA1 CLIP2 RASGRP1 CAP2 TM6SF1 OPCML TOMM22 COMTD1 S100A6 ATP5F1 GUCY1B3 OLFM2 ALDOA HINT1 NCEH1 INPP5F BSCL2 PSMD2 DNAJC6 DCC C1QBP SLC7A8 HMGCS1 HSPA8 FAM163B CTNND2 ONECUT2 CAPZA2 TUBB4A VGF RASGRF1 CAPNS1 GSK3A RNF208 ABHD8 RPL3 GSTP1 TMEM158 HPRT1 MORF4L1 CCT5 NDUFB2 SYT13 CD99L2 SLC39A10 GOT1 HTR2A MYL6 GNB1 FAM3C ATP5C1 PITPNA SLC25A6 TUSC2 CHP1 PCDH8 BEX2 ID2 SERINC3 SPTBN1 RHEB MYO1B SEPW1 TPI1 TESPA1 FAT3 PAFAH1B2 MRPL55 SLC25A22 RAP1GAP2 RBX1 SNCG MFN2 SLITRK1 PNMAL1 RCAN2 CTBP1 KIF1A B3GNT1 ITFG1 RORB PPP3CB TSPYL4 AKAP12 RRAGA NDUFA13 HSP90AA1 KCNV1 CORO2B ZNF385D KCNAB2 LIMK1 NDUFB10 UBE2E3 ALDH5A1 FBXL16 TCEA2 PSD3 MT-ND5 CNTN6 BTBD10 PPP1R9B CHMP4B TMEM59L HK1 FAM127A MAPRE2 TAGLN3 MPPED1 POLR2I COX4I1 FAM43B RPL15 ATXN10 ZNF365 HTR1F GNG3 PSMC3 LANCL1 APLP2 ATP5I ARF1 ARL2BP BEX4 CNTNAP5 NDUFA4 CX3CL1 EPHB6 WASF1 IDH3A SSBP3 PHB NCALD BLOC1S1 ANO3 NELL2 KIFAP3 DCTN1 MSMO1 BEX1 CETN2 RPS27A LGALS1 MAL2 RASGRF2 TERF2IP RAB6A RPS15 RPL10A NDUFC2 FKBP8 EDF1 NBL1 CHRDL1 SMIM13 MAST3 C1ORF233 TGOLN2 ANXA7 CBLN4 ENSA EEF1A2 KLC2 CHL1 QDPR CTNNA2 PFN2 RPL26 LMBRD2 VEGFA NGEF SYN2 RABAC1 CPLX1 VSTM2L EGFL7 GABRA1 COPRS ADD2 PTGES3 SLC25A4 NDUFA2 BAALC UROS CLDND1 MT-ND4L NAP1L3 ANAPC11 ZBTB18 FAM219A NDRG3 BAG4 GHITM APBB1 COX6B1 RHOB EPB41L3 ATP6AP1 SPRYD3 NPTXR ITM2C MRPS28 MTRNR2L6 TUBB PCDHA10 PCDHA4 PCDHAC1 PCDHA9 PCDHGA6 PCDHGA10 PCDHGA5\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "pyramidal neuron" } ] }, { "messages": [ { "role": "system", "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis." }, { "role": "user", "content": "Below is a list of {gene_names} ordered by descending expression level in a multiple sclerosis cell. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MT-CO1 MT-ND2 MT-ND4 MT-CYB MT-ND3 MAP1B MT-CO2 NRGN CALM1 SYT1 MT-CO3 RTN4 ENO2 DPYSL2 PREPL RTN1 LDB2 MT-ATP6 CCK TSPYL1 ATP1B1 ARPP19 RTN3 TUBA1B CLU MTRNR2L1 RPL3 AES PPP2R2B SNAP25 VSNL1 RAB3C TMSB4X PSAP APP NDRG4 PJA2 BSG AK5 SYT4 COX5B RPL8 CALM3 CALM2 PRNP CERS6 YWHAB ATRN GPR158 ETS2 YWHAH RPS15 STMN2 ENC1 RPL32 VAMP2 MT-ND1 FAIM2 YWHAG DPP6 CKB NUAK1 KCNAB2 SPOCK2 MTCH1 DKK3 TPI1 GPM6A NGFRAP1 NGEF DNAJC5 NMNAT2 ZBTB18 GAPDH C4ORF3 MTRNR2L12 MTRNR2L8 ATP6V0C RP11-20I23.1 IDS LINC00087 WSB2 TOMM20 TERF2IP FAM84A TPPP EIF4A2 CLTC CFL1 PTK2B RHEB GABARAPL2 PRKACB WBP11 ATP2B4 CHN1 MTRNR2L6 SKP1 PNMA1 RASGRF1 CA11 PTMA NDUFS5 CPE SUB1 LPPR4 GPX4 NREP NFE2L1 CEND1 CAPZA2 PFDN1 PGK1 BNIP3 DCTN1 NPTX1 HSPBP1 PRKAR1B FAT3 DYNLL2 ATP5H BCAP31 FTH1 CMPK1 SULT4A1 ARL8A MLF2 NEFL SNCA HSPB1 SLC17A7 NELL2 SSBP3 NDUFB2 TMEM59L BAG4 SLC12A5 KIF1A BEX5 RBX1 TMEM130 FXYD7 PPP2R4 GHITM WBP2 MIF COPRS ARF5 SLIT1 TPD52 EGFL7 OLA1 NARS GNG2 C9ORF16 ATP6V0B KITLG PEA15 EGR3 CALB1 OAT C14ORF2 UQCR10 SELT ENO1 CADM2 PSMC5 SERINC3 LDHB ACOT7 CDK5R1 ALCAM RABAC1 RNF208 UBE2M ARL6IP1 ANO3 STRAP APLP2 TXN PCDH19 PGM2L1 PPP3CB GAP43 SNX3 ATP6V1B2 TUBA1A PPP3CA ATXN10 WBSCR17 RAB6A FRMPD2 EIF1 SV2B PACSIN1 MSMO1 SRP9 BRK1 GPR116 RPH3A DNM3 LMO4 RAN AP1S2 GDF10 PEBP1 DYNLL1 TESPA1 MAP2K2 NWD2 H2AFZ REPS2 GRIN1 CHL1 UBB COX7C SEPT4 NCALD RPS12 TOMM70A CITED2 ATP5G1 CLSTN1 RELL2 MED10 HMGCR PHYHIP SYT11 YWHAZ PAM CD59 UCHL1 CYCS JUND TSPAN7 PEX5L CRKL VPS35 GPX1 CNP KIF5A CYP1B1 SLC22A17 ATP5E CYFIP2 CTNNA2 SLC39A10 SUMO2 SLC9A1 PRDX2 PPDPF NDUFA4 ARPC5L LINGO1 CREG2 PKM LRP1B DNAJB6 GNB1 NECAB1 PRKCB C1ORF52 AZIN1 SLC30A3 AP2S1 GSK3A BEX1 BLOC1S1 UHMK1 SARAF ZNF365 IPCEF1 FIBP SUCLA2 GUK1 CPNE8 SPTBN1 RAB3A ACP1 COPG1 ATP1A3 ZFAND5 RPL13A NDUFA13 SLC9A6 ATP5F1 FAM19A1 TSC22D1 NUDT4 RNASEK-C17ORF49 BSCL2 RPL21 ATP6V1G2\n{cell_types}: 'phagocyte', 'cortical layer 2-3 excitatory neuron A', 'cortical layer 4 excitatory neuron', 'mixed glial cell', 'SV2C-expressing interneuron', 'microglial cell', 'cortical layer 5-6 excitatory neuron', 'oligodendrocyte A', 'cortical layer 2-3 excitatory neuron B', 'mixed excitatory neuron', 'endothelial cell', 'VIP-expressing interneuron', 'PVALB-expressing interneuron', 'oligodendrocyte precursor cell', 'pyramidal neuron', 'SST-expressing interneuron', 'astrocyte', 'oligodendrocyte C'." }, { "role": "assistant", "content": "pyramidal neuron" } ] } ]