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perturbation-bench

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mauryzio commited on
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1 Parent(s): ac4d27e

Add syn_human benchmark split

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  1. README.md +86 -13
  2. syn_human/test-00000-of-00001.parquet +3 -0
README.md CHANGED
@@ -1,21 +1,94 @@
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  ---
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  license: apache-2.0
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  task_categories:
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- - text-generation
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  tags:
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- - biology
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- - genomics
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- - dna
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- - benchmark
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  configs:
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- - config_name: tata
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- data_files:
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- - split: train
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- path: tata/data.parquet
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- - config_name: synonymous_codons
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- data_files:
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- - split: train
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- path: synonymous_codons/data.parquet
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
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  ---
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  # Carbon Perturbation Bench
 
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  ---
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  license: apache-2.0
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  task_categories:
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+ - text-generation
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  tags:
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+ - biology
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+ - genomics
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+ - dna
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+ - benchmark
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  configs:
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+ - config_name: syn_human
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+ data_files:
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+ - split: test
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+ path: syn_human/test-*
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+ - config_name: synonymous_codons
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+ data_files:
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+ - split: train
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+ path: synonymous_codons/data.parquet
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+ - config_name: tata
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+ data_files:
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+ - split: train
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+ path: tata/data.parquet
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+ dataset_info:
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+ config_name: syn_human
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+ features:
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+ - name: benchmark_id
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+ dtype: string
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+ - name: annotation_source
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+ dtype: string
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+ - name: genome_assembly
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+ dtype: string
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+ - name: codon_usage_source
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+ dtype: string
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+ - name: recoding_mode
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+ dtype: string
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+ - name: optimization_rate
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+ dtype: float64
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+ - name: random_seed
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+ dtype: int64
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+ - name: window_size_bp
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+ dtype: int64
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+ - name: species
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+ dtype: string
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+ - name: chr
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+ dtype: string
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+ - name: strand
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+ dtype: string
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+ - name: cds_genome_start
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+ dtype: int64
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+ - name: cds_genome_end
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+ dtype: int64
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+ - name: transcript_id
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+ dtype: string
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+ - name: gene_id
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+ dtype: string
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+ - name: gene_name
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+ dtype: string
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+ - name: exon_rank
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+ dtype: int64
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+ - name: is_first_exon
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+ dtype: int64
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+ - name: cds_start_in_seq
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+ dtype: int64
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+ - name: cds_end_in_seq
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+ dtype: int64
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+ - name: cds_length
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+ dtype: int64
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+ - name: patch_start_in_seq
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+ dtype: int64
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+ - name: patch_end_in_seq
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+ dtype: int64
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+ - name: patch_length
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+ dtype: int64
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+ - name: n_codons_total
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+ dtype: int64
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+ - name: n_codons_eligible
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+ dtype: int64
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+ - name: n_codons_changed
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+ dtype: int64
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+ - name: fraction_codons_changed
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+ dtype: float64
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+ - name: original_sequence
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+ dtype: string
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+ - name: sequence
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+ dtype: string
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+ splits:
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+ - name: test
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+ num_bytes: 334444599
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+ num_examples: 20000
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+ download_size: 152353795
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+ dataset_size: 334444599
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  ---
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  # Carbon Perturbation Bench
syn_human/test-00000-of-00001.parquet ADDED
@@ -0,0 +1,3 @@
 
 
 
 
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+ version https://git-lfs.github.com/spec/v1
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+ oid sha256:71bf18520347d3dc0c3f9f1924b7e22254d0063554e4712a856077b5058ed180
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+ size 152353795