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@@ -37,7 +37,7 @@ altered — and asks whether the model assigns higher log-likelihood to the orig
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  ### `syn_human` · `syn_mouse` — Synonymous codon substitution (20,000 pairs each)
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  Codons within a real CDS are replaced with the highest-frequency synonym for the target
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- species (`recoding_mode = "optimize"`, `optimization_rate = 1.0`), while the upstream and
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  downstream flanking sequence is left unchanged. Amino acid identity is preserved by
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  construction. The model should prefer the natural codon usage over the artificially
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  optimised variant.
 
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  ### `syn_human` · `syn_mouse` — Synonymous codon substitution (20,000 pairs each)
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  Codons within a real CDS are replaced with the highest-frequency synonym for the target
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+ species, while the upstream and
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  downstream flanking sequence is left unchanged. Amino acid identity is preserved by
42
  construction. The model should prefer the natural codon usage over the artificially
43
  optimised variant.