loubnabnl HF Staff commited on
Commit
15f6063
·
verified ·
1 Parent(s): c3b70e3

Update README.md

Browse files
Files changed (1) hide show
  1. README.md +11 -0
README.md CHANGED
@@ -57,6 +57,17 @@ This corpus covers three major layers of biological complexity:
57
  - **Prokaryotes** — bacteria and archaea. Simpler, denser genomes; genes are packed tightly with less non-coding "junk."
58
  - **mRNA** — the processed, spliced transcript of a gene. This is what actually gets translated into protein. Much shorter than full genomic sequences. Including mRNA teaches the model about gene structure without the noise of intergenic regions.
59
 
 
 
 
 
 
 
 
 
 
 
 
60
 
61
  ## Loading the data
62
 
 
57
  - **Prokaryotes** — bacteria and archaea. Simpler, denser genomes; genes are packed tightly with less non-coding "junk."
58
  - **mRNA** — the processed, spliced transcript of a gene. This is what actually gets translated into protein. Much shorter than full genomic sequences. Including mRNA teaches the model about gene structure without the noise of intergenic regions.
59
 
60
+ DNA sequences in this corpus look like this:
61
+
62
+ ```
63
+ ATGCTAGCTAGCTAGCTAGCTAGCTAGCTAGCTAGCTAGCTAGCTAGCTAGCTAGCTAGC
64
+ ```
65
+
66
+ A 6-mer tokenizer, such as Carbon's, splits this into overlapping windows of 6 nucleotides:
67
+
68
+ ```
69
+ ATGCTA | TGCTAG | GCTAGC | CTAGCT | TAGCTA | AGCTAG | ...
70
+ ```
71
 
72
  ## Loading the data
73