ChrisHarig commited on
Commit
5436b5f
·
verified ·
1 Parent(s): b71e0ba

Update dataset card (nhsn-hrd)

Browse files
Files changed (1) hide show
  1. README.md +232 -0
README.md ADDED
@@ -0,0 +1,232 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ ---
2
+ pretty_name: CDC NHSN Hospital Respiratory Data (HRD)
3
+ license: other
4
+ size_categories:
5
+ - 10K<n<100K
6
+ tags:
7
+ - cadence-weekly
8
+ - geo-us
9
+ - surveillance-respiratory
10
+ - pathogen-influenza
11
+ - pathogen-sars-cov-2
12
+ - pathogen-rsv
13
+ - tier-1
14
+ - availability-open
15
+ schema_version: '0.1'
16
+ source_id: nhsn-hrd
17
+ source_url: https://data.cdc.gov/Public-Health-Surveillance/Weekly-Hospital-Respiratory-Data-HRD-Metrics-by-Ju/ua7e-t2fy/about_data
18
+ manifest_section: §1.1
19
+ surveillance_category: respiratory
20
+ pathogens:
21
+ - influenza
22
+ - sars-cov-2
23
+ - rsv
24
+ availability: open
25
+ availability_notes: null
26
+ access_type: socrata
27
+ tier: 1
28
+ cadence: weekly
29
+ geography_levels:
30
+ - national
31
+ - subnational-region
32
+ - subnational-state
33
+ geography_countries:
34
+ - US
35
+ gold_standard_for:
36
+ - flusight-forecast-hub
37
+ - covid19-forecast-hub
38
+ - rsv-forecast-hub
39
+ vintaged_version_of: null
40
+ succeeds: hhs-protect
41
+ derived_from: []
42
+ value_columns:
43
+ - name: totalconfflunewadm
44
+ unit: admissions/week
45
+ value_type: incident
46
+ description: New laboratory-confirmed influenza hospital admissions (FluSight target)
47
+ aggregation: sum
48
+ - name: totalconfc19newadm
49
+ unit: admissions/week
50
+ value_type: incident
51
+ description: New laboratory-confirmed COVID-19 hospital admissions
52
+ aggregation: sum
53
+ - name: totalconfrsvnewadm
54
+ unit: admissions/week
55
+ value_type: incident
56
+ description: New laboratory-confirmed RSV hospital admissions (mandatory reporting from epiweek 2024-46)
57
+ aggregation: sum
58
+ - name: numinptbeds
59
+ unit: beds
60
+ value_type: stock
61
+ description: Total staffed inpatient beds (capacity denominator) — point-in-time
62
+ aggregation: mean
63
+ - name: numinptbedsocc
64
+ unit: beds
65
+ value_type: stock
66
+ description: Staffed inpatient beds occupied — point-in-time
67
+ aggregation: mean
68
+ - name: numicubeds
69
+ unit: beds
70
+ value_type: stock
71
+ description: Total ICU beds — point-in-time
72
+ aggregation: mean
73
+ - name: numicubedsocc
74
+ unit: beds
75
+ value_type: stock
76
+ description: ICU beds occupied — point-in-time
77
+ aggregation: mean
78
+ - name: totalconfc19icupats
79
+ unit: patients
80
+ value_type: stock
81
+ description: Confirmed COVID-19 patients in ICU — point-in-time
82
+ aggregation: mean
83
+ - name: totalconffluicupats
84
+ unit: patients
85
+ value_type: stock
86
+ description: Confirmed influenza patients in ICU — point-in-time
87
+ aggregation: mean
88
+ - name: totalconfflunewadmper100k
89
+ unit: admissions/week per 100k population
90
+ value_type: rate
91
+ description: Weekly flu admission rate per 100k population
92
+ aggregation: rate
93
+ - name: totalconfc19newadmper100k
94
+ unit: admissions/week per 100k population
95
+ value_type: rate
96
+ description: Weekly COVID-19 admission rate per 100k population
97
+ aggregation: rate
98
+ - name: totalconfflunewadmcumulativeseasonalsum
99
+ unit: admissions
100
+ value_type: cumulative
101
+ description: Cumulative flu admissions since start of respiratory season
102
+ aggregation: max
103
+ - name: totalconfc19newadmcumulativeseasonalsum
104
+ unit: admissions
105
+ value_type: cumulative
106
+ description: Cumulative COVID-19 admissions since start of respiratory season
107
+ aggregation: max
108
+ - name: totalconfrsvnewadmcumulativeseasonalsum
109
+ unit: admissions
110
+ value_type: cumulative
111
+ description: Cumulative RSV admissions since start of respiratory season
112
+ aggregation: max
113
+ notes:
114
+ extra_columns:
115
+ - column: location_name
116
+ description: 2-letter postal abbreviation as reported by the source. Kept for traceability; `location_id` is canonical.
117
+ - column: respseason
118
+ description: Respiratory season identifier (e.g. '2024-2025'). NHSN-specific; useful for grouping by season but doesn't
119
+ appear in other sources.
120
+ interpretation_caveats:
121
+ - column: numinptbeds
122
+ caveat: Counts only *staffed* beds (those with available staff to operate). HHS Protect's analogous capacity column had
123
+ different inclusion criteria; do not naively splice across the 2024-11 boundary.
124
+ - column: totalconfflunewadm
125
+ caveat: Counts new admissions where flu was confirmed by lab on or within 14 days of admission. Reporting jurisdictions
126
+ varied this rule pre-2024-11; treat pre-2024-11 values as approximate.
127
+ - column: totalconfrsvnewadm
128
+ caveat: RSV mandatory reporting started epiweek 2024-46; pre-2024-46 values are NaN or sparsely populated by voluntary
129
+ reporters.
130
+ - column: '*cumulativeseasonalsum'
131
+ caveat: 'Cumulative within a respiratory season (resets at season boundary). Use with `value_type: cumulative` discipline
132
+ — never sum, diff to recover incident.'
133
+ general: 'NHSN HRD is the FluSight scoring target from the 2024–25 season onward. The feed includes
134
+
135
+ backfilled HHS Protect data going back to 2020-08, but the underlying reporting program
136
+
137
+ changed in 2024-11 (voluntary → mandatory). For long-term modeling that crosses that boundary,
138
+
139
+ treat pre-2024-11 and post-2024-11 as having different observational regimes.
140
+
141
+
142
+ Hospital reporting became voluntary 2024-05-01 to 2024-11-09; mandatory reporting resumed
143
+
144
+ under NHSN HRD starting epiweek 2024-46. The voluntary period has reduced coverage.
145
+
146
+ '
147
+ extra:
148
+ case_definition_url: https://www.cdc.gov/nhsn/psc/respiratory-data.html
149
+ source_columns_omitted: 199 of 213 source columns omitted (mostly adult/ped breakdowns, percentage-change variants, and
150
+ per-hospital-reporter normalizations). Available on the source endpoint if needed.
151
+ flusight_target_column: totalconfflunewadm
152
+ computed:
153
+ last_ingested: '2026-04-25T22:26:56Z'
154
+ row_count: 19966
155
+ time_coverage:
156
+ - start: '2020-08-08'
157
+ end: '2026-04-18'
158
+ geography_unit_count: 67
159
+ observed_cadence_days: 7
160
+ missing_gaps: []
161
+ ---
162
+
163
+ # CDC NHSN Hospital Respiratory Data (HRD)
164
+
165
+ NHSN HRD is the FluSight scoring target from the 2024–25 season onward. The feed includes
166
+ backfilled HHS Protect data going back to 2020-08, but the underlying reporting program
167
+ changed in 2024-11 (voluntary → mandatory). For long-term modeling that crosses that boundary,
168
+ treat pre-2024-11 and post-2024-11 as having different observational regimes.
169
+
170
+ Hospital reporting became voluntary 2024-05-01 to 2024-11-09; mandatory reporting resumed
171
+ under NHSN HRD starting epiweek 2024-46. The voluntary period has reduced coverage.
172
+
173
+ **Source:** <https://data.cdc.gov/Public-Health-Surveillance/Weekly-Hospital-Respiratory-Data-HRD-Metrics-by-Ju/ua7e-t2fy/about_data>
174
+
175
+ ## Coverage
176
+
177
+ - **Time:** 2020-08-08 → 2026-04-18
178
+ - **Cadence:** `weekly` (observed median spacing: 7 days)
179
+ - **Geography levels:** `national`, `subnational-region`, `subnational-state` — 67 unique location IDs
180
+ - **Countries:** US
181
+ - **Pathogens:** `influenza`, `sars-cov-2`, `rsv`
182
+ - **Surveillance category:** `respiratory`
183
+ - **Rows:** 19,966
184
+
185
+ ## Columns
186
+
187
+ | Column | Unit | value_type | Aggregation | Description |
188
+ |--------|------|------------|-------------|-------------|
189
+ | `totalconfflunewadm` | admissions/week | `incident` | `sum` | New laboratory-confirmed influenza hospital admissions (FluSight target) |
190
+ | `totalconfc19newadm` | admissions/week | `incident` | `sum` | New laboratory-confirmed COVID-19 hospital admissions |
191
+ | `totalconfrsvnewadm` | admissions/week | `incident` | `sum` | New laboratory-confirmed RSV hospital admissions (mandatory reporting from epiweek 2024-46) |
192
+ | `numinptbeds` | beds | `stock` | `mean` | Total staffed inpatient beds (capacity denominator) — point-in-time |
193
+ | `numinptbedsocc` | beds | `stock` | `mean` | Staffed inpatient beds occupied — point-in-time |
194
+ | `numicubeds` | beds | `stock` | `mean` | Total ICU beds — point-in-time |
195
+ | `numicubedsocc` | beds | `stock` | `mean` | ICU beds occupied — point-in-time |
196
+ | `totalconfc19icupats` | patients | `stock` | `mean` | Confirmed COVID-19 patients in ICU — point-in-time |
197
+ | `totalconffluicupats` | patients | `stock` | `mean` | Confirmed influenza patients in ICU — point-in-time |
198
+ | `totalconfflunewadmper100k` | admissions/week per 100k population | `rate` | `rate` | Weekly flu admission rate per 100k population |
199
+ | `totalconfc19newadmper100k` | admissions/week per 100k population | `rate` | `rate` | Weekly COVID-19 admission rate per 100k population |
200
+ | `totalconfflunewadmcumulativeseasonalsum` | admissions | `cumulative` | `max` | Cumulative flu admissions since start of respiratory season |
201
+ | `totalconfc19newadmcumulativeseasonalsum` | admissions | `cumulative` | `max` | Cumulative COVID-19 admissions since start of respiratory season |
202
+ | `totalconfrsvnewadmcumulativeseasonalsum` | admissions | `cumulative` | `max` | Cumulative RSV admissions since start of respiratory season |
203
+
204
+ ### Additional data columns
205
+
206
+ - **`location_name`** — 2-letter postal abbreviation as reported by the source. Kept for traceability; `location_id` is canonical.
207
+ - **`respseason`** — Respiratory season identifier (e.g. '2024-2025'). NHSN-specific; useful for grouping by season but doesn't appear in other sources.
208
+
209
+ ## Interpretation caveats
210
+
211
+ Things that may differ from how other sources define a similar measure. If you're combining this dataset with another, read these first.
212
+
213
+ - **`numinptbeds`** — Counts only *staffed* beds (those with available staff to operate). HHS Protect's analogous capacity column had different inclusion criteria; do not naively splice across the 2024-11 boundary.
214
+ - **`totalconfflunewadm`** — Counts new admissions where flu was confirmed by lab on or within 14 days of admission. Reporting jurisdictions varied this rule pre-2024-11; treat pre-2024-11 values as approximate.
215
+ - **`totalconfrsvnewadm`** — RSV mandatory reporting started epiweek 2024-46; pre-2024-46 values are NaN or sparsely populated by voluntary reporters.
216
+ - **`*cumulativeseasonalsum`** — Cumulative within a respiratory season (resets at season boundary). Use with `value_type: cumulative` discipline — never sum, diff to recover incident.
217
+
218
+ ## Related datasets in EPI-Eval
219
+
220
+ - **Gold standard for:** `flusight-forecast-hub`, `covid19-forecast-hub`, `rsv-forecast-hub`
221
+ - **Succeeds:** `hhs-protect` (different reporting program; do not splice rows directly without normalization)
222
+
223
+ ## Access
224
+
225
+ - **Availability:** `open`
226
+ - **Access type:** `socrata`
227
+ - **License:** other
228
+ - **Tier:** 1
229
+
230
+ ---
231
+
232
+ *Schema version `0.1` · Last ingested 2026-04-25T22:26:56Z · `source_id: nhsn-hrd` · Manifest section §1.1*