ChrisHarig commited on
Commit
3b3e450
·
verified ·
1 Parent(s): df7958f

Initial ingest — canada-fluwatch — card update

Browse files
Files changed (1) hide show
  1. README.md +153 -0
README.md ADDED
@@ -0,0 +1,153 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ ---
2
+ pretty_name: PHAC Respiratory Virus Detection Surveillance — Canada weekly
3
+ license: other
4
+ license_name: ogl-canada-2.0
5
+ license_link: https://open.canada.ca/en/open-government-licence-canada
6
+ size_categories:
7
+ - 10K<n<100K
8
+ tags:
9
+ - cadence-weekly
10
+ - geo-ca
11
+ - surveillance-respiratory
12
+ - pathogen-influenza
13
+ - pathogen-sars-cov-2
14
+ - pathogen-rsv
15
+ - tier-2
16
+ - availability-open
17
+ schema_version: '0.1'
18
+ source_id: canada-fluwatch
19
+ source_url: https://health-infobase.canada.ca/respiratory-virus-surveillance/
20
+ manifest_section: §5.6
21
+ surveillance_category: respiratory
22
+ pathogens:
23
+ - influenza
24
+ - influenza-a
25
+ - influenza-b
26
+ - sars-cov-2
27
+ - rsv
28
+ - hmpv
29
+ - adenovirus
30
+ - parainfluenza
31
+ - rhinovirus-enterovirus
32
+ - seasonal-coronavirus
33
+ availability: open
34
+ availability_notes: null
35
+ access_type: csv
36
+ tier: 2
37
+ cadence: weekly
38
+ geography_levels:
39
+ - national
40
+ - subnational-state
41
+ - subnational-region
42
+ geography_countries:
43
+ - CA
44
+ gold_standard_for: []
45
+ vintaged_version_of: null
46
+ succeeds: null
47
+ derived_from: []
48
+ value_columns:
49
+ - name: tests
50
+ unit: specimens/week
51
+ value_type: incident
52
+ description: Number of specimens tested for this virus, this region, this week
53
+ aggregation: sum
54
+ - name: detections
55
+ unit: positives/week
56
+ value_type: incident
57
+ description: Number of specimens that detected this virus
58
+ aggregation: sum
59
+ - name: percentpositive
60
+ unit: percent (0-100)
61
+ value_type: proportion
62
+ description: Share of specimens positive (`detections / tests`)
63
+ aggregation: rate
64
+ notes:
65
+ extra_columns:
66
+ - column: condition_native
67
+ description: PHAC virus name (`SARS-CoV-2`, `Influenza A`, `RSV`, ...). `condition` is the EPI-Eval slug.
68
+ - column: location_name
69
+ description: Province / territory / region name from PHAC. `location_id` is canonical.
70
+ interpretation_caveats:
71
+ - column: condition
72
+ caveat: Includes 'adenovirus', 'parainfluenza', 'rhinovirus-enterovirus', 'seasonal-coronavirus' which are *not yet in
73
+ vocabularies.yaml*. Adding them is recommended (low-cost extension).
74
+ - column: percentpositive
75
+ caveat: PHAC reports % to 1 decimal; small jurisdictions can swing widely week-to-week.
76
+ general: 'PHAC publishes a single weekly CSV. Long-format with one row per
77
+
78
+ (date × jurisdiction × virus). The dataset replaces FluWatch+ as Canada''s
79
+
80
+ multi-virus respiratory surveillance feed. Note that some "regions" are PHAC
81
+
82
+ rollups (Atlantic, Prairies) sitting alongside individual provinces.
83
+
84
+ '
85
+ extra:
86
+ source_columns_omitted: 2 (week, weekorder, year — derivable from date)
87
+ vocabularies_extension_request:
88
+ - new_pathogens:
89
+ - adenovirus
90
+ - parainfluenza
91
+ - rhinovirus-enterovirus
92
+ - seasonal-coronavirus
93
+ computed:
94
+ last_ingested: '2026-04-26T12:48:31Z'
95
+ row_count: 2720
96
+ time_coverage:
97
+ - start: '2025-08-30'
98
+ end: '2026-04-18'
99
+ geography_unit_count: 17
100
+ observed_cadence_days: 7
101
+ missing_gaps: []
102
+ data_hash: a72d12e0dd10548a
103
+ ---
104
+
105
+ # PHAC Respiratory Virus Detection Surveillance — Canada weekly
106
+
107
+ PHAC publishes a single weekly CSV. Long-format with one row per
108
+ (date × jurisdiction × virus). The dataset replaces FluWatch+ as Canada's
109
+ multi-virus respiratory surveillance feed. Note that some "regions" are PHAC
110
+ rollups (Atlantic, Prairies) sitting alongside individual provinces.
111
+
112
+ **Source:** <https://health-infobase.canada.ca/respiratory-virus-surveillance/>
113
+
114
+ ## Coverage
115
+
116
+ - **Time:** 2025-08-30 → 2026-04-18
117
+ - **Cadence:** `weekly` (observed median spacing: 7 days)
118
+ - **Geography levels:** `national`, `subnational-state`, `subnational-region` — 17 unique location IDs
119
+ - **Countries:** CA
120
+ - **Pathogens:** `influenza`, `influenza-a`, `influenza-b`, `sars-cov-2`, `rsv`, `hmpv`, `adenovirus`, `parainfluenza`, `rhinovirus-enterovirus`, `seasonal-coronavirus`
121
+ - **Surveillance category:** `respiratory`
122
+ - **Rows:** 2,720
123
+
124
+ ## Columns
125
+
126
+ | Column | Unit | value_type | Aggregation | Description |
127
+ |--------|------|------------|-------------|-------------|
128
+ | `tests` | specimens/week | `incident` | `sum` | Number of specimens tested for this virus, this region, this week |
129
+ | `detections` | positives/week | `incident` | `sum` | Number of specimens that detected this virus |
130
+ | `percentpositive` | percent (0-100) | `proportion` | `rate` | Share of specimens positive (`detections / tests`) |
131
+
132
+ ### Additional data columns
133
+
134
+ - **`condition_native`** — PHAC virus name (`SARS-CoV-2`, `Influenza A`, `RSV`, ...). `condition` is the EPI-Eval slug.
135
+ - **`location_name`** — Province / territory / region name from PHAC. `location_id` is canonical.
136
+
137
+ ## Interpretation caveats
138
+
139
+ Things that may differ from how other sources define a similar measure. If you're combining this dataset with another, read these first.
140
+
141
+ - **`condition`** — Includes 'adenovirus', 'parainfluenza', 'rhinovirus-enterovirus', 'seasonal-coronavirus' which are *not yet in vocabularies.yaml*. Adding them is recommended (low-cost extension).
142
+ - **`percentpositive`** — PHAC reports % to 1 decimal; small jurisdictions can swing widely week-to-week.
143
+
144
+ ## Access
145
+
146
+ - **Availability:** `open`
147
+ - **Access type:** `csv`
148
+ - **License:** other
149
+ - **Tier:** 2
150
+
151
+ ---
152
+
153
+ *Schema version `0.1` · Last ingested 2026-04-26T12:48:31Z · `source_id: canada-fluwatch` · Manifest section §5.6*