Upload 112 files
Browse filesThis view is limited to 50 files because it contains too many changes. See raw diff
- .gitattributes +4 -57
- ANONYMIZATION.md +15 -0
- LICENSE +7 -0
- README.md +61 -3
- checksums_sha256.txt +105 -0
- data/sample_001/frame_000.tif +3 -0
- data/sample_001/frame_001.tif +3 -0
- data/sample_001/frame_002.tif +3 -0
- data/sample_001/frame_003.tif +3 -0
- data/sample_001/frame_004.tif +3 -0
- data/sample_001/frame_005.tif +3 -0
- data/sample_001/fusion.tif +3 -0
- data/sample_002/frame_000.tif +3 -0
- data/sample_002/frame_001.tif +3 -0
- data/sample_002/frame_002.tif +3 -0
- data/sample_002/frame_003.tif +3 -0
- data/sample_002/frame_004.tif +3 -0
- data/sample_002/frame_005.tif +3 -0
- data/sample_002/frame_006.tif +3 -0
- data/sample_002/frame_007.tif +3 -0
- data/sample_002/fusion.tif +3 -0
- data/sample_003/frame_000.tif +3 -0
- data/sample_003/frame_001.tif +3 -0
- data/sample_003/frame_002.tif +3 -0
- data/sample_003/frame_003.tif +3 -0
- data/sample_003/frame_004.tif +3 -0
- data/sample_003/frame_005.tif +3 -0
- data/sample_003/frame_006.tif +3 -0
- data/sample_003/fusion.tif +3 -0
- data/sample_004/frame_000.tif +3 -0
- data/sample_004/frame_001.tif +3 -0
- data/sample_004/frame_002.tif +3 -0
- data/sample_004/frame_003.tif +3 -0
- data/sample_004/frame_004.tif +3 -0
- data/sample_004/frame_005.tif +3 -0
- data/sample_004/frame_006.tif +3 -0
- data/sample_004/frame_007.tif +3 -0
- data/sample_004/frame_008.tif +3 -0
- data/sample_004/frame_009.tif +3 -0
- data/sample_004/fusion.tif +3 -0
- data/sample_005/frame_000.tif +3 -0
- data/sample_005/frame_001.tif +3 -0
- data/sample_005/frame_002.tif +3 -0
- data/sample_005/frame_003.tif +3 -0
- data/sample_005/frame_004.tif +3 -0
- data/sample_005/fusion.tif +3 -0
- data/sample_006/frame_000.jpg +3 -0
- data/sample_006/frame_001.jpg +3 -0
- data/sample_007/frame_000.jpg +3 -0
- data/sample_007/frame_001.jpg +3 -0
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LICENSE text eol=lf
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ANONYMIZATION.md
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# Anonymization Notes
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This upload package was prepared for double-blind review.
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Actions applied:
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- Replaced all original directory names with neutral `sample_###` identifiers.
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- Replaced all original image filenames with neutral `frame_###` names plus `fusion.tif` where applicable.
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- Removed source-side readme files from the upload package.
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- Omitted acquisition dates, collection location, author names, affiliations, funding information, and project identifiers.
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- Rewrote TIFF images without EXIF/MakerNote metadata and thumbnail directories.
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- Rewrote JPEG files with extra metadata markers removed.
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- Generated fresh sample-level and file-level metadata using anonymized paths only.
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The original, non-anonymized mapping is not included in this repository.
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LICENSE
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Creative Commons Attribution 4.0 International Public License
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This dataset is released under the Creative Commons Attribution 4.0 International (CC BY 4.0) license.
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During the double-blind review period, creator attribution and citation information are intentionally omitted to preserve anonymity. After the review process permits deanonymization, please cite the associated paper and dataset record.
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License text: https://creativecommons.org/licenses/by/4.0/
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README.md
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---
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license:
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---
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license: cc-by-4.0
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task_categories:
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- image-to-image
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- computer-vision
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tags:
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- microscopy
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- focus-stacking
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- image-fusion
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- computational-imaging
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- anonymous-review
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pretty_name: Anonymous Microscopy Focus Test Set
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size_categories:
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- n<1K
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---
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# Anonymous Microscopy Focus Test Set
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This repository contains an anonymized microscopy image test set prepared for double-blind peer review of a WISA/ICONIP submission. Author names, affiliations, collection location, funding information, project-specific identifiers, and acquisition dates have been intentionally omitted during the review period.
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The dataset includes microscopy focus-stack TIFF sequences with fused reference images where available, plus additional JPEG microscopy image series. File and directory names have been replaced with neutral sample identifiers.
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## Directory Structure
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```text
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data/
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sample_001/
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frame_000.tif
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frame_001.tif
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fusion.tif
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sample_002/
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...
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metadata.csv
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manifest.csv
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checksums_sha256.txt
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ANONYMIZATION.md
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LICENSE
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```
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## Data Fields
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`metadata.csv` gives sample-level information:
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- `sample_id`: anonymized sample identifier.
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- `specimen_group`: coarse specimen category.
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- `region`: coarse anatomical/imaging region.
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- `modality`: `focus_stack_tiff` or `jpeg_series`.
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- `magnification`: reported only when needed for reproducibility and not identifying.
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- `z_step_um`: reported only when needed for reproducibility and not identifying.
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- `num_files`: number of files in the anonymized sample directory.
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- `has_fusion_reference`: whether `fusion.tif` is provided.
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`manifest.csv` gives file-level information including relative path, role, frame index, image size, byte size, and SHA-256 checksum.
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## Review-Period Anonymity
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This dataset is provided in anonymized form for peer review. The public record, formal citation, author attribution, and any additional provenance details will be added after the review process permits deanonymization.
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## License
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The image data are released under CC BY 4.0. During anonymous review, attribution information is intentionally withheld; please cite the associated paper after acceptance when bibliographic information becomes available.
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checksums_sha256.txt
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fed866623be6db27c4d88b1154bf91b1a59cfd7752d1dc9451f571a37ddf254f data/sample_001/frame_000.tif
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b6ab1133316af3a2f8fe9314b7623ce6dd768ffe6a857bcaf21e80c824acc272 data/sample_001/frame_001.tif
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fa72ff94f1ea9a752349af40a8c84234036170957d70d6969ea471cbb6625f24 data/sample_001/frame_002.tif
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7dca1e696ca9b4e33864321162b4558d76adc846a0fdd4b25dabbd83f0ed2369 data/sample_001/frame_003.tif
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a8288e47ca34b59e076d3a8137cf1354c45536cc38241dc9b38d537bd33e196d data/sample_001/frame_004.tif
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a8f93cdcf59484e2169bafea4c77264c1c85792e8a7ba5d71ed74e0d125ca631 data/sample_001/frame_005.tif
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d30a333b79cd8228ef3f945312e4f4d25944d636c669cbf1d859b6a751a32dc3 data/sample_001/fusion.tif
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416c9e3e007807b0b3d5f4baac5b8e44e10c80ffcc6a78ba5527e87371e74c09 data/sample_002/frame_000.tif
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d1278d8391722ce07f9f19d64d2cb325ab795643c4e3fdb42ae0fc46717e5e74 data/sample_002/frame_001.tif
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0285dca7d58213e803e4af8175d190a988aac61ff24ff176672b425bcacfef48 data/sample_002/frame_002.tif
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2865fb2f3b42c392fe2299527c2d6fb790eeebc6307349498ee39f4d6bad5b1d data/sample_002/frame_003.tif
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0825cd3986d524fd012de5457b19f7db701d69205a032ff50d150d89151945f8 data/sample_002/frame_004.tif
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62b0e79555aba9305f92f95badabcf9e5d10938b5623c8e68866cfc859bec7a6 data/sample_002/frame_005.tif
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0efdfc7adbb2c30d5304bc7db4e4e7341af41338b840fbb6c7b3f2cf112190a2 data/sample_002/frame_006.tif
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a7e820dcaec0e40907c16084cecf4187f31f6b601b8dcd801d6a7cd703e67131 data/sample_002/frame_007.tif
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7d8326cdf71ebae05714925a586e8fc73a93a8ed5a2541b0f2e9e05ac20e1925 data/sample_002/fusion.tif
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ad292f0ba05d6e901e7a2c20381443c3b761ecaaca1f3290132a226ab156cd3b data/sample_003/frame_000.tif
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4a1ecda20d06ddf6b19b7ad6c2d0cdbbe9d5c46dbfc7c02ad3b14350931f9729 data/sample_003/frame_001.tif
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4aa09c2e53593dc14187eb5daae1debdad95cf606724b07385728bc8740ba7e8 data/sample_003/frame_002.tif
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b8676004fcf470c63341af748df4f28025afff6ec093a6af4aa5775441ca95a0 data/sample_003/frame_003.tif
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dfa315e629d80e92187063b7e6c4412661666f710a6d1c495d8ecd3b11ac1ac8 data/sample_003/frame_004.tif
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