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Create data/train.csv
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row_id,series_id,timepoint_h,organism,strain_id,antibiotic_name,antibiotic_class,exposure_index,mic_mg_L,pae_hours,media,assay_method,source_type,pae_loss_signal,earliest_pae_loss,notes
ABXPD003-TR-0001,S1,0,Escherichia coli,EC-ATCC25922,meropenem,carbapenem,1.00,0.03,3.5,CAMHB,pae_regrowth_delay,simulated,0,0,baseline PAE
ABXPD003-TR-0002,S1,24,Escherichia coli,EC-ATCC25922,meropenem,carbapenem,1.10,0.03,3.4,CAMHB,pae_regrowth_delay,simulated,0,0,stable
ABXPD003-TR-0003,S1,48,Escherichia coli,EC-ATCC25922,meropenem,carbapenem,1.05,0.03,3.3,CAMHB,pae_regrowth_delay,simulated,0,0,stable
ABXPD003-TR-0004,S2,0,Klebsiella pneumoniae,KP-CLIN021,ceftriaxone,3rd_gen_cephalosporin,1.00,0.50,2.8,CAMHB,pae_regrowth_delay,simulated,0,0,baseline PAE
ABXPD003-TR-0005,S2,24,Klebsiella pneumoniae,KP-CLIN021,ceftriaxone,3rd_gen_cephalosporin,1.00,0.50,2.6,CAMHB,pae_regrowth_delay,simulated,0,0,small drop
ABXPD003-TR-0006,S2,48,Klebsiella pneumoniae,KP-CLIN021,ceftriaxone,3rd_gen_cephalosporin,1.05,0.50,1.3,CAMHB,pae_regrowth_delay,simulated,1,1,PAE halves before MIC changes
ABXPD003-TR-0007,S2,72,Klebsiella pneumoniae,KP-CLIN021,ceftriaxone,3rd_gen_cephalosporin,1.10,0.50,1.1,CAMHB,pae_regrowth_delay,simulated,1,0,continued low PAE
ABXPD003-TR-0008,S3,0,Staphylococcus aureus,SA-ATCC29213,vancomycin,glycopeptide,1.00,1.00,2.2,CAMHB,pae_regrowth_delay,simulated,0,0,baseline
ABXPD003-TR-0009,S3,24,Staphylococcus aureus,SA-ATCC29213,vancomycin,glycopeptide,1.00,1.00,0.2,CAMHB,pae_regrowth_delay,simulated,0,0,likely measurement issue
ABXPD003-TR-0010,S3,48,Staphylococcus aureus,SA-ATCC29213,vancomycin,glycopeptide,1.00,1.00,2.1,CAMHB,pae_regrowth_delay,simulated,0,0,snap back supports error