extract_files.sh

#!/bin/bash

ROOT="ome"

echo "Extracting all .zarr.tar.gz files in $ROOT ..."

find "$ROOT" -name "*.zarr.tar.gz" -print0 | while IFS= read -r -d '' file; do
    echo "Extracting $file ..."

    # Extract
    if tar -xzf "$file"; then
        echo "Extraction successful: $file"
        rm "$file"
    else
        echo "ERROR: Failed to extract $file"
    fi
done

echo "Done."