import os import numpy as np from os.path import join, dirname from ridge_utils.textgrid import TextGrid def load_textgrids(stories, data_dir: str): """ TODO (shailee): Add description.""" base = join(data_dir, "ds003020/derivative/TextGrids") grids = {} for story in stories: grid_path = os.path.join(base, "%s.TextGrid"%story) grids[story] = TextGrid(open(grid_path).read()) return grids class TRFile(object): def __init__(self, trfilename, expectedtr=2.0045): """Loads data from [trfilename], should be output from stimulus presentation code. """ self.trtimes = [] self.soundstarttime = -1 self.soundstoptime = -1 self.otherlabels = [] self.expectedtr = expectedtr if trfilename is not None: self.load_from_file(trfilename) def load_from_file(self, trfilename): """Loads TR data from report with given [trfilename]. """ ## Read the report file and populate the datastructure for ll in open(trfilename): timestr = ll.split()[0] label = " ".join(ll.split()[1:]) time = float(timestr) if label in ("init-trigger", "trigger"): self.trtimes.append(time) elif label=="sound-start": self.soundstarttime = time elif label=="sound-stop": self.soundstoptime = time else: self.otherlabels.append((time, label)) ## Fix weird TR times itrtimes = np.diff(self.trtimes) badtrtimes = np.nonzero(itrtimes>(itrtimes.mean()*1.5))[0] newtrs = [] for btr in badtrtimes: ## Insert new TR where it was missing.. newtrtime = self.trtimes[btr]+self.expectedtr newtrs.append((newtrtime,btr)) for ntr,btr in newtrs: self.trtimes.insert(btr+1, ntr) def simulate(self, ntrs): """Simulates [ntrs] TRs that occur at the expected TR. """ self.trtimes = list(np.arange(ntrs)*self.expectedtr) def get_reltriggertimes(self): """Returns the times of all trigger events relative to the sound. """ return np.array(self.trtimes)-self.soundstarttime @property def avgtr(self): """Returns the average TR for this run. """ return np.diff(self.trtimes).mean() def load_simulated_trfiles(respdict, tr=2.0, start_time=10.0, pad=5): trdict = dict() for story, resps in respdict.items(): trf = TRFile(None, tr) trf.soundstarttime = start_time trf.simulate(resps - pad) trdict[story] = [trf] return trdict