Update README.md
Browse files
README.md
CHANGED
|
@@ -1,5 +1,13 @@
|
|
| 1 |
-
---
|
| 2 |
-
license: other
|
| 3 |
-
license_name: penn-license
|
| 4 |
-
license_link: LICENSE
|
| 5 |
-
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
---
|
| 2 |
+
license: other
|
| 3 |
+
license_name: penn-license
|
| 4 |
+
license_link: LICENSE
|
| 5 |
+
tags:
|
| 6 |
+
- SpatialTranscriptomics
|
| 7 |
+
- VirtualPrediction
|
| 8 |
+
---
|
| 9 |
+
Virtual spatial transcriptomics by AURORA of TCGA-LUAD, TCGA-KIRC, TCGA-BRCA and BRCA pre-chemotherapy (https://doi.org/10.1038/s41586-021-04278-5) samples. Virtual spatial transcriptomics are stored in *.h5* format:
|
| 10 |
+
|
| 11 |
+
- `pos`: spatial coordinates of patches (224 pixels * 224 pixels). This is the coordinates of the upper left corner of each patch.
|
| 12 |
+
- `gene_exp`: gene expressions. The names of the genes are stored in `genes.csv`.
|
| 13 |
+
- `celltype_prop`: cell type proportions in log scales. The name of the cell types are stored in `celltypes.csv`.
|