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modeling_data

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  1. README.md +525 -0
  2. full_patient_state/full_patient_state-00000-of-00032.parquet +3 -0
  3. full_patient_state/full_patient_state-00001-of-00032.parquet +3 -0
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  16. full_patient_state/full_patient_state-00014-of-00032.parquet +3 -0
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README.md CHANGED
@@ -4,6 +4,10 @@ pretty_name: modeling_data
4
  license_name: physionet-credentialed-health-data-1.5.0
5
  license_link: https://physionet.org/content/mimiciv/view-license/3.1/
6
  configs:
 
 
 
 
7
  - config_name: part1_holdout
8
  data_files:
9
  - split: part1_holdout
@@ -24,5 +28,526 @@ configs:
24
  data_files:
25
  - split: part2_train
26
  path: part2_train/*.parquet
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
27
  ---
28
 
 
4
  license_name: physionet-credentialed-health-data-1.5.0
5
  license_link: https://physionet.org/content/mimiciv/view-license/3.1/
6
  configs:
7
+ - config_name: full_patient_state
8
+ data_files:
9
+ - split: full_patient_state
10
+ path: full_patient_state/full_patient_state-*
11
  - config_name: part1_holdout
12
  data_files:
13
  - split: part1_holdout
 
28
  data_files:
29
  - split: part2_train
30
  path: part2_train/*.parquet
31
+ dataset_info:
32
+ config_name: full_patient_state
33
+ features:
34
+ - name: ed_stay_id
35
+ dtype: int64
36
+ - name: time
37
+ dtype: timestamp[us]
38
+ - name: step_idx
39
+ dtype: int64
40
+ - name: subject_id
41
+ dtype: int64
42
+ - name: hadm_id
43
+ dtype: int64
44
+ - name: stay_window_start
45
+ dtype: timestamp[us]
46
+ - name: stay_window_end
47
+ dtype: timestamp[us]
48
+ - name: gender
49
+ dtype: large_string
50
+ - name: anchor_age
51
+ dtype: int64
52
+ - name: admission_type
53
+ dtype: large_string
54
+ - name: cohort_label
55
+ dtype: large_string
56
+ - name: terminal_event
57
+ dtype: large_string
58
+ - name: acuity
59
+ dtype: float64
60
+ - name: current_temperature
61
+ dtype: float64
62
+ - name: current_heartrate
63
+ dtype: float64
64
+ - name: current_resprate
65
+ dtype: float64
66
+ - name: current_o2sat
67
+ dtype: float64
68
+ - name: current_sbp
69
+ dtype: float64
70
+ - name: current_dbp
71
+ dtype: float64
72
+ - name: current_pain
73
+ dtype: float64
74
+ - name: chiefcomplaint
75
+ dtype: large_string
76
+ - name: time_since_last_min
77
+ dtype: int64
78
+ - name: pain_missing
79
+ dtype: int64
80
+ - name: heartrate_missing
81
+ dtype: int64
82
+ - name: o2sat_missing
83
+ dtype: int64
84
+ - name: acuity_missing
85
+ dtype: int64
86
+ - name: resprate_missing
87
+ dtype: int64
88
+ - name: sbp_missing
89
+ dtype: int64
90
+ - name: dbp_missing
91
+ dtype: int64
92
+ - name: temperature_missing
93
+ dtype: int64
94
+ - name: temperature_delta
95
+ dtype: float64
96
+ - name: heartrate_delta
97
+ dtype: float64
98
+ - name: resprate_delta
99
+ dtype: float64
100
+ - name: o2sat_delta
101
+ dtype: float64
102
+ - name: sbp_delta
103
+ dtype: float64
104
+ - name: dbp_delta
105
+ dtype: float64
106
+ - name: pain_delta
107
+ dtype: float64
108
+ - name: temperature_rate_per_min
109
+ dtype: float64
110
+ - name: heartrate_rate_per_min
111
+ dtype: float64
112
+ - name: resprate_rate_per_min
113
+ dtype: float64
114
+ - name: o2sat_rate_per_min
115
+ dtype: float64
116
+ - name: sbp_rate_per_min
117
+ dtype: float64
118
+ - name: dbp_rate_per_min
119
+ dtype: float64
120
+ - name: current_mean_arterial_pressure
121
+ dtype: float64
122
+ - name: temperature_rolling1h
123
+ dtype: float64
124
+ - name: heartrate_rolling1h
125
+ dtype: float64
126
+ - name: resprate_rolling1h
127
+ dtype: float64
128
+ - name: o2sat_rolling1h
129
+ dtype: float64
130
+ - name: sbp_rolling1h
131
+ dtype: float64
132
+ - name: dbp_rolling1h
133
+ dtype: float64
134
+ - name: vitals_checked
135
+ dtype: int64
136
+ - name: Blood Gas-Blood_Pending
137
+ dtype: int64
138
+ - name: Blood Gas-Blood_Normal
139
+ dtype: int64
140
+ - name: Blood Gas-Blood_Abnormal
141
+ dtype: int64
142
+ - name: Blood Gas-Other Body Fluid_Pending
143
+ dtype: int64
144
+ - name: Blood Gas-Other Body Fluid_Normal
145
+ dtype: int64
146
+ - name: Blood Gas-Other Body Fluid_Abnormal
147
+ dtype: int64
148
+ - name: Chemistry-Ascites_Pending
149
+ dtype: int64
150
+ - name: Chemistry-Ascites_Normal
151
+ dtype: int64
152
+ - name: Chemistry-Ascites_Abnormal
153
+ dtype: int64
154
+ - name: Chemistry-Blood_Pending
155
+ dtype: int64
156
+ - name: Chemistry-Blood_Normal
157
+ dtype: int64
158
+ - name: Chemistry-Blood_Abnormal
159
+ dtype: int64
160
+ - name: Chemistry-Cerebrospinal Fluid_Pending
161
+ dtype: int64
162
+ - name: Chemistry-Cerebrospinal Fluid_Normal
163
+ dtype: int64
164
+ - name: Chemistry-Cerebrospinal Fluid_Abnormal
165
+ dtype: int64
166
+ - name: Chemistry-Joint Fluid_Pending
167
+ dtype: int64
168
+ - name: Chemistry-Joint Fluid_Normal
169
+ dtype: int64
170
+ - name: Chemistry-Joint Fluid_Abnormal
171
+ dtype: int64
172
+ - name: Chemistry-Other Body Fluid_Pending
173
+ dtype: int64
174
+ - name: Chemistry-Other Body Fluid_Normal
175
+ dtype: int64
176
+ - name: Chemistry-Other Body Fluid_Abnormal
177
+ dtype: int64
178
+ - name: Chemistry-Pleural_Pending
179
+ dtype: int64
180
+ - name: Chemistry-Pleural_Normal
181
+ dtype: int64
182
+ - name: Chemistry-Pleural_Abnormal
183
+ dtype: int64
184
+ - name: Chemistry-Stool_Pending
185
+ dtype: int64
186
+ - name: Chemistry-Stool_Normal
187
+ dtype: int64
188
+ - name: Chemistry-Stool_Abnormal
189
+ dtype: int64
190
+ - name: Chemistry-Urine_Pending
191
+ dtype: int64
192
+ - name: Chemistry-Urine_Normal
193
+ dtype: int64
194
+ - name: Chemistry-Urine_Abnormal
195
+ dtype: int64
196
+ - name: Hematology-Ascites_Pending
197
+ dtype: int64
198
+ - name: Hematology-Ascites_Normal
199
+ dtype: int64
200
+ - name: Hematology-Ascites_Abnormal
201
+ dtype: int64
202
+ - name: Hematology-Blood_Pending
203
+ dtype: int64
204
+ - name: Hematology-Blood_Normal
205
+ dtype: int64
206
+ - name: Hematology-Blood_Abnormal
207
+ dtype: int64
208
+ - name: Hematology-Bone Marrow_Pending
209
+ dtype: int64
210
+ - name: Hematology-Bone Marrow_Normal
211
+ dtype: int64
212
+ - name: Hematology-Bone Marrow_Abnormal
213
+ dtype: int64
214
+ - name: Hematology-Cerebrospinal Fluid_Pending
215
+ dtype: int64
216
+ - name: Hematology-Cerebrospinal Fluid_Normal
217
+ dtype: int64
218
+ - name: Hematology-Cerebrospinal Fluid_Abnormal
219
+ dtype: int64
220
+ - name: Hematology-Joint Fluid_Pending
221
+ dtype: int64
222
+ - name: Hematology-Joint Fluid_Normal
223
+ dtype: int64
224
+ - name: Hematology-Joint Fluid_Abnormal
225
+ dtype: int64
226
+ - name: Hematology-Other Body Fluid_Pending
227
+ dtype: int64
228
+ - name: Hematology-Other Body Fluid_Normal
229
+ dtype: int64
230
+ - name: Hematology-Other Body Fluid_Abnormal
231
+ dtype: int64
232
+ - name: Hematology-Pleural_Pending
233
+ dtype: int64
234
+ - name: Hematology-Pleural_Normal
235
+ dtype: int64
236
+ - name: Hematology-Pleural_Abnormal
237
+ dtype: int64
238
+ - name: Hematology-Stool_Pending
239
+ dtype: int64
240
+ - name: Hematology-Stool_Normal
241
+ dtype: int64
242
+ - name: Hematology-Stool_Abnormal
243
+ dtype: int64
244
+ - name: Hematology-Urine_Pending
245
+ dtype: int64
246
+ - name: Hematology-Urine_Normal
247
+ dtype: int64
248
+ - name: Hematology-Urine_Abnormal
249
+ dtype: int64
250
+ - name: labs_ordered
251
+ dtype: int64
252
+ - name: ABSCESS_Pending
253
+ dtype: int64
254
+ - name: ABSCESS_Negative
255
+ dtype: int64
256
+ - name: ABSCESS_Positive
257
+ dtype: int64
258
+ - name: ABSCESS_Other
259
+ dtype: int64
260
+ - name: BILE_Pending
261
+ dtype: int64
262
+ - name: BILE_Negative
263
+ dtype: int64
264
+ - name: BILE_Positive
265
+ dtype: int64
266
+ - name: BILE_Other
267
+ dtype: int64
268
+ - name: BLOOD CULTURE_Pending
269
+ dtype: int64
270
+ - name: BLOOD CULTURE_Negative
271
+ dtype: int64
272
+ - name: BLOOD CULTURE_Positive
273
+ dtype: int64
274
+ - name: BLOOD CULTURE_Other
275
+ dtype: int64
276
+ - name: BRONCHOALVEOLAR LAVAGE_Pending
277
+ dtype: int64
278
+ - name: BRONCHOALVEOLAR LAVAGE_Negative
279
+ dtype: int64
280
+ - name: BRONCHOALVEOLAR LAVAGE_Positive
281
+ dtype: int64
282
+ - name: BRONCHOALVEOLAR LAVAGE_Other
283
+ dtype: int64
284
+ - name: Blood (CMV AB)_Pending
285
+ dtype: int64
286
+ - name: Blood (CMV AB)_Negative
287
+ dtype: int64
288
+ - name: Blood (CMV AB)_Positive
289
+ dtype: int64
290
+ - name: Blood (CMV AB)_Other
291
+ dtype: int64
292
+ - name: Blood (EBV)_Pending
293
+ dtype: int64
294
+ - name: Blood (EBV)_Negative
295
+ dtype: int64
296
+ - name: Blood (EBV)_Positive
297
+ dtype: int64
298
+ - name: Blood (EBV)_Other
299
+ dtype: int64
300
+ - name: CSF;SPINAL FLUID_Pending
301
+ dtype: int64
302
+ - name: CSF;SPINAL FLUID_Negative
303
+ dtype: int64
304
+ - name: CSF;SPINAL FLUID_Positive
305
+ dtype: int64
306
+ - name: CSF;SPINAL FLUID_Other
307
+ dtype: int64
308
+ - name: FLUID,OTHER_Pending
309
+ dtype: int64
310
+ - name: FLUID,OTHER_Negative
311
+ dtype: int64
312
+ - name: FLUID,OTHER_Positive
313
+ dtype: int64
314
+ - name: FLUID,OTHER_Other
315
+ dtype: int64
316
+ - name: IMMUNOLOGY_Pending
317
+ dtype: int64
318
+ - name: IMMUNOLOGY_Negative
319
+ dtype: int64
320
+ - name: IMMUNOLOGY_Positive
321
+ dtype: int64
322
+ - name: IMMUNOLOGY_Other
323
+ dtype: int64
324
+ - name: JOINT FLUID_Pending
325
+ dtype: int64
326
+ - name: JOINT FLUID_Negative
327
+ dtype: int64
328
+ - name: JOINT FLUID_Positive
329
+ dtype: int64
330
+ - name: JOINT FLUID_Other
331
+ dtype: int64
332
+ - name: MRSA SCREEN_Pending
333
+ dtype: int64
334
+ - name: MRSA SCREEN_Negative
335
+ dtype: int64
336
+ - name: MRSA SCREEN_Positive
337
+ dtype: int64
338
+ - name: MRSA SCREEN_Other
339
+ dtype: int64
340
+ - name: OTHER_Pending
341
+ dtype: int64
342
+ - name: OTHER_Negative
343
+ dtype: int64
344
+ - name: OTHER_Positive
345
+ dtype: int64
346
+ - name: OTHER_Other
347
+ dtype: int64
348
+ - name: PERITONEAL FLUID_Pending
349
+ dtype: int64
350
+ - name: PERITONEAL FLUID_Negative
351
+ dtype: int64
352
+ - name: PERITONEAL FLUID_Positive
353
+ dtype: int64
354
+ - name: PERITONEAL FLUID_Other
355
+ dtype: int64
356
+ - name: PLEURAL FLUID_Pending
357
+ dtype: int64
358
+ - name: PLEURAL FLUID_Negative
359
+ dtype: int64
360
+ - name: PLEURAL FLUID_Positive
361
+ dtype: int64
362
+ - name: PLEURAL FLUID_Other
363
+ dtype: int64
364
+ - name: Rapid Respiratory Viral Screen & Culture_Pending
365
+ dtype: int64
366
+ - name: Rapid Respiratory Viral Screen & Culture_Negative
367
+ dtype: int64
368
+ - name: Rapid Respiratory Viral Screen & Culture_Positive
369
+ dtype: int64
370
+ - name: Rapid Respiratory Viral Screen & Culture_Other
371
+ dtype: int64
372
+ - name: SEROLOGY/BLOOD_Pending
373
+ dtype: int64
374
+ - name: SEROLOGY/BLOOD_Negative
375
+ dtype: int64
376
+ - name: SEROLOGY/BLOOD_Positive
377
+ dtype: int64
378
+ - name: SEROLOGY/BLOOD_Other
379
+ dtype: int64
380
+ - name: SPUTUM_Pending
381
+ dtype: int64
382
+ - name: SPUTUM_Negative
383
+ dtype: int64
384
+ - name: SPUTUM_Positive
385
+ dtype: int64
386
+ - name: SPUTUM_Other
387
+ dtype: int64
388
+ - name: STOOL_Pending
389
+ dtype: int64
390
+ - name: STOOL_Negative
391
+ dtype: int64
392
+ - name: STOOL_Positive
393
+ dtype: int64
394
+ - name: STOOL_Other
395
+ dtype: int64
396
+ - name: SWAB_Pending
397
+ dtype: int64
398
+ - name: SWAB_Negative
399
+ dtype: int64
400
+ - name: SWAB_Positive
401
+ dtype: int64
402
+ - name: SWAB_Other
403
+ dtype: int64
404
+ - name: TISSUE_Pending
405
+ dtype: int64
406
+ - name: TISSUE_Negative
407
+ dtype: int64
408
+ - name: TISSUE_Positive
409
+ dtype: int64
410
+ - name: TISSUE_Other
411
+ dtype: int64
412
+ - name: URINE_Pending
413
+ dtype: int64
414
+ - name: URINE_Negative
415
+ dtype: int64
416
+ - name: URINE_Positive
417
+ dtype: int64
418
+ - name: URINE_Other
419
+ dtype: int64
420
+ - name: micro_ordered
421
+ dtype: int64
422
+ - name: ACE Inhibitor
423
+ dtype: int64
424
+ - name: Analgesic - Acetaminophen
425
+ dtype: int64
426
+ - name: Analgesic - NSAID
427
+ dtype: int64
428
+ - name: Analgesic - Opioid/NSAID
429
+ dtype: int64
430
+ - name: Antiarrhythmic
431
+ dtype: int64
432
+ - name: Antibiotic
433
+ dtype: int64
434
+ - name: Anticoagulant
435
+ dtype: int64
436
+ - name: Anticonvulsant
437
+ dtype: int64
438
+ - name: Antiemetic
439
+ dtype: int64
440
+ - name: Antiplatelet
441
+ dtype: int64
442
+ - name: Antipsychotic
443
+ dtype: int64
444
+ - name: Benzodiazepine - Sedative/Anxiolytic
445
+ dtype: int64
446
+ - name: Beta Blocker
447
+ dtype: int64
448
+ - name: Bronchodilator
449
+ dtype: int64
450
+ - name: Calcium Channel Blocker
451
+ dtype: int64
452
+ - name: Corticosteroid
453
+ dtype: int64
454
+ - name: Diuretic
455
+ dtype: int64
456
+ - name: GI - Acid Suppression
457
+ dtype: int64
458
+ - name: IV Fluid
459
+ dtype: int64
460
+ - name: Insulin/Glucose
461
+ dtype: int64
462
+ - name: Nitrate
463
+ dtype: int64
464
+ - name: Other
465
+ dtype: int64
466
+ - name: ecg_status_Normal
467
+ dtype: int64
468
+ - name: ecg_status_Moderate
469
+ dtype: int64
470
+ - name: ecg_status_Acute
471
+ dtype: int64
472
+ - name: rad_status_Normal
473
+ dtype: int64
474
+ - name: rad_status_Moderate
475
+ dtype: int64
476
+ - name: rad_status_Acute
477
+ dtype: int64
478
+ - name: in_ed
479
+ dtype: int64
480
+ - name: in_ward
481
+ dtype: int64
482
+ - name: terminal_code
483
+ dtype: int64
484
+ - name: weight
485
+ dtype: float64
486
+ - name: height
487
+ dtype: float64
488
+ - name: recon_ace_inhibitor
489
+ dtype: int64
490
+ - name: recon_analgesic___nsaid
491
+ dtype: int64
492
+ - name: recon_analgesic___opioid_nsaid
493
+ dtype: int64
494
+ - name: recon_antiarrhythmic
495
+ dtype: int64
496
+ - name: recon_antibiotic
497
+ dtype: int64
498
+ - name: recon_anticoagulant
499
+ dtype: int64
500
+ - name: recon_anticonvulsant
501
+ dtype: int64
502
+ - name: recon_antiemetic
503
+ dtype: int64
504
+ - name: recon_antiplatelet
505
+ dtype: int64
506
+ - name: recon_antipsychotic
507
+ dtype: int64
508
+ - name: recon_benzodiazepine___sedative_anxiolytic
509
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