| description: Attribute Standardizer Output Schema in alignment with BEDBASE schema |
|
|
| properties: |
| sample_name: |
| type: string |
| description: "Name of the sample" |
| genome: |
| type: string |
| description: "Type of Genome Assemblies (eg. GRCh38)" |
| species_name: |
| type: string |
| description: "Name of species. e.g. Homo sapiens.", alias="organism" |
| species_id: |
| type: string |
| description: "Species identifier, resolvable by identifiers.org (eg. taxonomy:9606)" |
| genotype: |
| type: string |
| description: "Genotype of the sample" |
| phenotype: |
| type: string |
| description: "Phenotype of the sample" |
| cell_type: |
| type: string |
| description: "Cell type, population of cells that can be grown indefinitely in the lab, used for research, drug testing, and studying biological processes" |
| cell_line: |
| type: string |
| description: "A cultured, immortalized cell population derived from a single cell type, used for experimental research or therapeutic purposes." |
| tissue: |
| type: string |
| description: "Tissue type" |
| library_source: |
| type: string |
| description: "Library source (e.g. genomic, transcriptomic)" |
| assay: |
| type: string |
| description: "Experimental protocol (e.g. ChIP-seq)", alias="exp_protocol" |
| antibody: |
| type: string |
| description: "Antibody used in the assay" |
| target: |
| type: string |
| description: "Target of the assay (e.g. H3K4me3)" |
| treatment: |
| type: string |
| description: "Treatment of the sample (e.g. drug treatment)" |
| required: |
| - None |
