train_smol_discharge.py

# /// script
# dependencies = [
#     "trl>=0.12.0",
#     "peft>=0.7.0",
#     "transformers>=4.36.0",
#     "accelerate>=0.24.0",
#     "trackio",
#     "bitsandbytes",
# ]
# ///

import os
from huggingface_hub import login

# Login with token from environment (set via secrets)
token = os.environ.get("HF_TOKEN")
if token:
    login(token=token)
    print("Logged in to HuggingFace Hub")

from datasets import load_dataset
from peft import LoraConfig
from transformers import AutoTokenizer, AutoModelForCausalLM
from trl import SFTTrainer, SFTConfig

print("Loading tokenizer...")
tokenizer = AutoTokenizer.from_pretrained("HuggingFaceTB/SmolLM3-3B-Base")

CHAT_TEMPLATE = "{% for message in messages %}{% if message['role'] == 'system' %}<|im_start|>system\n{{ message['content'] }}<|im_end|>\n{% elif message['role'] == 'user' %}<|im_start|>user\n{{ message['content'] }}<|im_end|>\n{% elif message['role'] == 'assistant' %}<|im_start|>assistant\n{{ message['content'] }}<|im_end|>\n{% endif %}{% endfor %}{% if add_generation_prompt %}<|im_start|>assistant\n{% endif %}"

tokenizer.chat_template = CHAT_TEMPLATE
special_tokens = {"additional_special_tokens": ["<|im_start|>", "<|im_end|>"]}
tokenizer.add_special_tokens(special_tokens)
if tokenizer.pad_token is None:
    tokenizer.pad_token = tokenizer.eos_token

print("Loading model...")
model = AutoModelForCausalLM.from_pretrained(
    "HuggingFaceTB/SmolLM3-3B-Base",
    torch_dtype="auto",
    device_map="auto",
)
model.resize_token_embeddings(len(tokenizer))

print("Loading dataset...")
train_dataset = load_dataset("chrisvoncsefalvay/smol-discharge-notes-sft", split="train")
eval_dataset = load_dataset("chrisvoncsefalvay/smol-discharge-notes-sft", split="validation")
print(f"Train: {len(train_dataset)} examples")
print(f"Eval: {len(eval_dataset)} examples")

config = SFTConfig(
    output_dir="smollm3-discharge-notes-sft",
    push_to_hub=True,
    hub_model_id="chrisvoncsefalvay/smollm3-discharge-notes-sft",
    hub_strategy="every_save",
    num_train_epochs=3,
    per_device_train_batch_size=8,
    per_device_eval_batch_size=4,
    gradient_accumulation_steps=2,
    learning_rate=2e-5,
    max_length=2048,
    logging_steps=10,
    save_strategy="steps",
    save_steps=50,
    save_total_limit=2,
    eval_strategy="steps",
    eval_steps=50,
    warmup_ratio=0.1,
    lr_scheduler_type="cosine",
    gradient_checkpointing=True,
    bf16=True,
    report_to="trackio",
    project="clinical-action-processing",
    run_name="smollm3-3b-discharge-sft-a100",
)

peft_config = LoraConfig(
    r=16,
    lora_alpha=32,
    lora_dropout=0.05,
    bias="none",
    task_type="CAUSAL_LM",
    target_modules=["q_proj", "k_proj", "v_proj", "o_proj", "gate_proj", "up_proj", "down_proj"],
)

print("Initializing trainer...")
trainer = SFTTrainer(
    model=model,
    processing_class=tokenizer,
    train_dataset=train_dataset,
    eval_dataset=eval_dataset,
    args=config,
    peft_config=peft_config,
)

print("Starting training...")
trainer.train()

print("Pushing to Hub...")
trainer.push_to_hub()

print("Complete!")