import os from functools import partial from urllib.parse import urlparse from typing import ( Tuple, Union, Callable, Literal, Optional, Type, Set, List, Dict, Any, ) import torch import torch.nn as nn from timm.layers import PatchDropout, AttentionPoolLatent from timm.models.vision_transformer import LayerScale, DropPath, Mlp from huggingface_hub import hf_hub_download, load_state_dict_from_file from spectre.models.layers import ( PatchEmbed, Attention, RotaryPositionEmbedding, ) from spectre.utils import ( resample_abs_pos_embed, feature_take_indices, global_pool_nlc, ) class Block(nn.Module): def __init__( self, dim: int, num_heads: int, attn_mode: str = 'mha', q_proj_dim: Optional[int] = None, kv_proj_dim: Optional[int] = None, mlp_ratio: float = 4., qkv_bias: bool = False, qk_norm: bool = False, proj_bias: bool = True, proj_drop: float = 0., attn_drop: float = 0., init_values: Optional[float] = None, drop_path: float = 0., act_layer: Type[nn.Module] = nn.GELU, norm_layer: Type[nn.Module] = nn.LayerNorm, mlp_layer: Type[nn.Module] = Mlp, ) -> None: super().__init__() self.norm1 = norm_layer(dim) self.attn = Attention( dim, num_heads=num_heads, mode=attn_mode, q_proj_dim=q_proj_dim, kv_proj_dim=kv_proj_dim, qkv_bias=qkv_bias, qk_norm=qk_norm, proj_bias=proj_bias, attn_drop=attn_drop, proj_drop=proj_drop, norm_layer=norm_layer, ) self.ls1 = LayerScale(dim, init_values=init_values) if init_values else nn.Identity() self.drop_path1 = DropPath(drop_path) if drop_path > 0. else nn.Identity() self.norm2 = norm_layer(dim) self.mlp = mlp_layer( in_features=dim, hidden_features=int(dim * mlp_ratio), act_layer=act_layer, bias=proj_bias, drop=proj_drop, ) self.ls2 = LayerScale(dim, init_values=init_values) if init_values else nn.Identity() self.drop_path2 = DropPath(drop_path) if drop_path > 0. else nn.Identity() def forward( self, x: torch.Tensor, rope = None ) -> torch.Tensor: x = x + self.drop_path1(self.ls1(self.attn(self.norm1(x), rope=rope))) x = x + self.drop_path2(self.ls2(self.mlp(self.norm2(x)))) return x class VisionTransformer(nn.Module): """ Vision Transformer with 3D Patch Embedding """ def __init__( self, img_size: Union[int, Tuple[int, int, int]] = (128, 128, 64), patch_size: Union[int, Tuple[int, int, int]] = (16, 16, 8), in_chans: int = 1, num_classes: int = 1000, global_pool: Literal['', 'avg', 'avgmax', 'max', 'token', 'map'] = 'token', embed_dim: int = 768, depth: int = 12, num_heads: int = 12, attn_mode: str = 'mha', q_proj_dim: Optional[int] = None, kv_proj_dim: Optional[int] = None, mlp_ratio: float = 4., qkv_bias: bool = True, qk_norm: bool = False, proj_bias: bool = True, init_values: Optional[float] = None, class_token: bool = True, pos_embed: str = 'learn', no_embed_class: bool = False, rope_kwargs: Optional[dict] = None, reg_tokens: int = 0, pre_norm: bool = False, final_norm: bool = True, fc_norm: Optional[bool] = None, dynamic_img_size: bool = False, dynamic_img_pad: bool = False, drop_rate: float = 0., pos_drop_rate: float = 0., patch_drop_rate: float = 0., proj_drop_rate: float = 0., attn_drop_rate: float = 0., drop_path_rate: float = 0., embed_layer: Callable = PatchEmbed, embed_norm_layer: Optional[Union[Callable, Type[torch.nn.Module]]] = None, norm_layer: Optional[Union[Callable, Type[torch.nn.Module]]] = None, act_layer: Optional[Union[Callable, Type[torch.nn.Module]]] = None, block_fn: Type[nn.Module] = Block, mlp_layer: Type[nn.Module] = Mlp, ) -> None: """ Args: img_size: Input image size. patch_size: Patch size. in_chans: Number of image input channels. num_classes: Number of classes for classification head. global_pool: Type of global pooling for final sequence (default: 'token'). embed_dim: Transformer embedding dimension. depth: Depth of transformer. num_heads: Number of attention heads. attn_mode: Attention mode ('mha', 'mqa', 'mla'). q_proj_dim: Query projection dimension for 'mla' mode. kv_proj_dim: Key, value projection dimension for 'mla' mode. mlp_ratio: Ratio of mlp hidden dim to embedding dim. qkv_bias: Enable bias for qkv projections if True. init_values: Layer-scale init values (layer-scale enabled if not None). class_token: Use class token. pos_embed: Type of position embedding to use (default: 'learn'). no_embed_class: Don't include position embeddings for class (or reg) tokens for learnable pos_embed. rope_kwargs: Additional arguments for rotary position embedding. reg_tokens: Number of register tokens. pre_norm: Enable norm after embeddings, before transformer blocks (standard in CLIP ViT). final_norm: Enable norm after transformer blocks, before head (standard in most ViT). fc_norm: Move final norm after pool (instead of before), if None, enabled when global_pool == 'avg'. drop_rate: Head dropout rate. pos_drop_rate: Position embedding dropout rate. attn_drop_rate: Attention dropout rate. drop_path_rate: Stochastic depth rate. weight_init: Weight initialization scheme. fix_init: Apply weight initialization fix (scaling w/ layer index). embed_layer: Patch embedding layer. embed_norm_layer: Normalization layer to use / override in patch embed module. norm_layer: Normalization layer. act_layer: MLP activation layer. block_fn: Transformer block layer. """ super().__init__() assert global_pool in ('', 'avg', 'avgmax', 'max', 'token', 'map') assert class_token or global_pool != 'token' assert pos_embed in ('', 'none', 'learn', 'rope') assert attn_mode in ('mha', 'mqa', 'mla') rope_kwargs = {} if rope_kwargs is None else dict(rope_kwargs) rope_kwargs.setdefault("dtype", torch.float32) # robust with mixed-precision use_fc_norm = global_pool in ('avg', 'avgmax', 'max') if fc_norm is None else fc_norm norm_layer = norm_layer or partial(nn.LayerNorm, eps=1e-6) embed_norm_layer = embed_norm_layer act_layer = act_layer or nn.GELU self.num_classes = num_classes self.global_pool = global_pool self.num_features = self.head_hidden_size = self.embed_dim = embed_dim # for consistency with other models self.num_prefix_tokens = 1 if class_token else 0 self.num_prefix_tokens += reg_tokens self.num_reg_tokens = reg_tokens self.has_class_token = class_token self.no_embed_class = no_embed_class # don't embed prefix positions (includes reg) self.dynamic_img_size = dynamic_img_size embed_args = {} if self.dynamic_img_size: # flatten deferred until after pos embed embed_args.update(dict(strict_img_size=False, output_fmt="NHWDC")) elif pos_embed == 'rope': embed_args['output_fmt'] = "NHWDC" if embed_norm_layer is not None: embed_args['norm_layer'] = embed_norm_layer self.patch_embed = embed_layer( img_size=img_size, patch_size=patch_size, in_chans=in_chans, embed_dim=embed_dim, bias=not pre_norm, # disable bias if pre-norm is used (e.g. CLIP) dynamic_img_pad=dynamic_img_pad, **embed_args, ) num_patches = self.patch_embed.num_patches reduction = self.patch_embed.feat_ratio() if hasattr(self.patch_embed, 'feat_ratio') else patch_size self.cls_token = nn.Parameter(torch.zeros(1, 1, embed_dim)) if class_token else None self.reg_token = nn.Parameter(torch.zeros(1, reg_tokens, embed_dim)) if reg_tokens else None embed_len = num_patches if no_embed_class else num_patches + self.num_prefix_tokens self.pos_embed, self.rope, self.requires_per_sample_rope = None, None, False if pos_embed == 'learn': self.pos_embed = nn.Parameter(torch.randn(1, embed_len, embed_dim) * .02) if pos_embed == 'rope': self.rope = RotaryPositionEmbedding( embed_dim=embed_dim, num_heads=num_heads, **rope_kwargs, ) self.requires_per_sample_rope = any([ self.rope.shift_coords is not None, self.rope.jitter_coords is not None, self.rope.rescale_coords is not None, ]) self.pos_drop = nn.Dropout(p=pos_drop_rate) if patch_drop_rate > 0: self.patch_drop = PatchDropout( patch_drop_rate, num_prefix_tokens=self.num_prefix_tokens, ) else: self.patch_drop = nn.Identity() self.norm_pre = norm_layer(embed_dim) if pre_norm else nn.Identity() dpr = [drop_path_rate * i / (depth - 1) if depth > 1 else 0.0 for i in range(depth)] # stochastic depth decay rule self.blocks = nn.Sequential(*[ block_fn( dim=embed_dim, num_heads=num_heads, attn_mode=attn_mode, q_proj_dim=q_proj_dim, kv_proj_dim=kv_proj_dim, mlp_ratio=mlp_ratio, qkv_bias=qkv_bias, qk_norm=qk_norm, proj_bias=proj_bias, init_values=init_values, proj_drop=proj_drop_rate, attn_drop=attn_drop_rate, drop_path=dpr[i], norm_layer=norm_layer, act_layer=act_layer, mlp_layer=mlp_layer, ) for i in range(depth)]) self.feature_info = [ dict(module=f'blocks.{i}', num_chs=embed_dim, reduction=reduction) for i in range(depth)] self.norm = norm_layer(embed_dim) if final_norm and not use_fc_norm else nn.Identity() # Classifier Head if global_pool == 'map': self.attn_pool = AttentionPoolLatent( self.embed_dim, num_heads=num_heads, mlp_ratio=mlp_ratio, norm_layer=norm_layer, act_layer=act_layer, ) else: self.attn_pool = None self.fc_norm = norm_layer(embed_dim) if final_norm and use_fc_norm else nn.Identity() self.head_drop = nn.Dropout(drop_rate) self.head = nn.Linear(self.embed_dim, num_classes) if num_classes > 0 else nn.Identity() self.init_weights() def init_weights(self) -> None: if self.pos_embed is not None and not self.pos_embed.is_meta: nn.init.trunc_normal_(self.pos_embed, std=.02) if self.cls_token is not None and not self.cls_token.is_meta: nn.init.normal_(self.cls_token, std=1e-6) if self.reg_token is not None and not self.reg_token.is_meta: nn.init.normal_(self.reg_token, std=1e-6) self.apply(self._init_weights) def _init_weights(self, m: nn.Module) -> None: # this fn left here for compat with downstream users if isinstance(m, nn.Linear): if not m.weight.is_meta: nn.init.trunc_normal_(m.weight, std=.02) if m.bias is not None and not m.bias.is_meta: nn.init.zeros_(m.bias) @torch.jit.ignore def no_weight_decay(self) -> Set: return {'pos_embed', 'cls_token', 'dist_token'} @torch.jit.ignore def get_classifier(self) -> nn.Module: return self.head def reset_classifier(self, num_classes: int, global_pool: Optional[str] = None): self.num_classes = num_classes if global_pool is not None: assert global_pool in ('', 'avg', 'avgmax', 'max', 'token', 'map') if global_pool == 'map' and self.attn_pool is None: assert False, "Cannot currently add attention pooling in reset_classifier()." elif global_pool != 'map' and self.attn_pool is not None: self.attn_pool = None # remove attention pooling self.global_pool = global_pool self.head = nn.Linear(self.embed_dim, num_classes) if num_classes > 0 else nn.Identity() def set_input_size( self, img_size: Optional[Tuple[int, int, int]] = None, patch_size: Optional[Tuple[int, int, int]] = None, ): """Method updates the input image resolution, patch size Args: img_size: New input resolution, if None current resolution is used patch_size: New patch size, if None existing patch size is used """ prev_grid_size = self.patch_embed.grid_size self.patch_embed.set_input_size(img_size=img_size, patch_size=patch_size) if self.pos_embed is not None: num_prefix_tokens = 0 if self.no_embed_class else self.num_prefix_tokens num_new_tokens = self.patch_embed.num_patches + num_prefix_tokens if num_new_tokens != self.pos_embed.shape[1]: self.pos_embed = nn.Parameter(resample_abs_pos_embed( self.pos_embed, new_size=self.patch_embed.grid_size, old_size=prev_grid_size, num_prefix_tokens=num_prefix_tokens, verbose=True, )) def _pos_embed(self, x: torch.Tensor): if self.pos_embed is None and self.rope is None: x = x.view(x.shape[0], -1, x.shape[-1]) if self.reg_token is not None: x = torch.cat([self.reg_token.expand(x.shape[0], -1, -1), x], dim=1) if self.cls_token is not None: x = torch.cat([self.cls_token.expand(x.shape[0], -1, -1), x], dim=1) return x, None if self.dynamic_img_size or self.rope is not None: B, H, W, D, C = x.shape x = x.view(B, -1, C) pos_embed, rope = None, None if self.pos_embed is not None: if self.dynamic_img_size: prev_grid_size = self.patch_embed.grid_size pos_embed = resample_abs_pos_embed( self.pos_embed, new_size=(H, W, D), old_size=prev_grid_size, num_prefix_tokens=0 if self.no_embed_class else self.num_prefix_tokens, ) else: pos_embed = self.pos_embed if self.rope is not None: if self.requires_per_sample_rope: rope = [self.rope(H=H, W=W, D=D) for _ in range(B)] else: rope = self.rope(H=H, W=W, D=D) to_cat = [] if self.cls_token is not None: to_cat.append(self.cls_token.expand(x.shape[0], -1, -1)) if self.reg_token is not None: to_cat.append(self.reg_token.expand(x.shape[0], -1, -1)) if self.no_embed_class: # deit-3, updated JAX (big vision) # position embedding does not overlap with class token, add then concat if pos_embed is not None: x = x + pos_embed if to_cat: x = torch.cat(to_cat + [x], dim=1) else: # original timm, JAX, and deit vit impl # pos_embed has entry for class token, concat then add if to_cat: x = torch.cat(to_cat + [x], dim=1) if pos_embed is not None: x = x + pos_embed return self.pos_drop(x), rope def forward_intermediates( self, x: torch.Tensor, indices: Optional[Union[int, List[int]]] = None, return_prefix_tokens: bool = False, norm: bool = False, stop_early: bool = False, output_fmt: str = 'NCHWD', intermediates_only: bool = False, output_dict: bool = False, ) -> Union[List[torch.Tensor], Tuple[torch.Tensor, List[torch.Tensor]], Dict[str, Any]]: """ Forward features that returns intermediates. Args: x: Input image tensor indices: Take last n blocks if int, all if None, select matching indices if sequence return_prefix_tokens: Return both prefix and spatial intermediate tokens norm: Apply norm layer to all intermediates stop_early: Stop iterating over blocks when last desired intermediate hit output_fmt: Shape of intermediate feature outputs intermediates_only: Only return intermediate features output_dict: Return outputs as a dictionary with 'image_features' and 'image_intermediates' keys Returns: A tuple with (final_features, intermediates), a list of intermediate features, or a dictionary containing 'image_features' and 'image_intermediates' (and optionally 'image_intermediates_prefix') """ assert output_fmt in ('NCHWD', 'NLC'), 'Output format must be one of NCHWD or NLC.' reshape = output_fmt == 'NCHWD' intermediates = [] take_indices, max_index = feature_take_indices(len(self.blocks), indices) # forward pass B, _, height, width, depth = x.shape x = self.patch_embed(x) x, rope = self._pos_embed(x) x = self.patch_drop(x) x = self.norm_pre(x) if torch.jit.is_scripting() or not stop_early: # can't slice blocks in torchscript blocks = self.blocks else: blocks = self.blocks[:max_index + 1] for i, blk in enumerate(blocks): x = blk(x, rope=rope) if i in take_indices: # normalize intermediates with final norm layer if enabled intermediates.append(self.norm(x) if norm else x) # process intermediates if self.num_prefix_tokens: # split prefix (e.g. class, distill) and spatial feature tokens prefix_tokens = [y[:, 0:self.num_prefix_tokens] for y in intermediates] intermediates = [y[:, self.num_prefix_tokens:] for y in intermediates] else: prefix_tokens = None if reshape: # reshape to BCHW output format H, W, D = self.patch_embed.dynamic_feat_size((height, width, depth)) intermediates = [y.reshape(B, H, W, D, -1).permute(0, 4, 1, 2, 3).contiguous() for y in intermediates] if output_dict: result_dict = {} # Intermediates are always included result_dict['image_intermediates'] = intermediates if prefix_tokens is not None and return_prefix_tokens: result_dict['image_intermediates_prefix'] = prefix_tokens # Only include features if not intermediates_only if not intermediates_only: x_final = self.norm(x) result_dict['image_features'] = x_final return result_dict # For non-dictionary output, maintain the original behavior if not torch.jit.is_scripting() and return_prefix_tokens and prefix_tokens is not None: # return_prefix not support in torchscript due to poor type handling intermediates = list(zip(intermediates, prefix_tokens)) if intermediates_only: return intermediates x = self.norm(x) return x, intermediates def prune_intermediate_layers( self, indices: Union[int, List[int]] = 1, prune_norm: bool = False, prune_head: bool = True, ): """Prune layers not required for specified intermediates. Args: indices: Indices of intermediate layers to keep. prune_norm: Whether to prune normalization layer. prune_head: Whether to prune the classifier head. Returns: List of indices that were kept. """ take_indices, max_index = feature_take_indices(len(self.blocks), indices) self.blocks = self.blocks[:max_index + 1] # truncate blocks if prune_norm: self.norm = nn.Identity() if prune_head: self.fc_norm = nn.Identity() self.reset_classifier(0, '') return take_indices def get_intermediate_layers( self, x: torch.Tensor, n: Union[int, List[int], Tuple[int]] = 1, reshape: bool = False, return_prefix_tokens: bool = False, norm: bool = False, ) -> Tuple[Union[torch.Tensor, Tuple[torch.Tensor]]]: """Get intermediate layer outputs (DINO interface compatibility). NOTE: This API is for backwards compat, favour using forward_intermediates() directly. Args: x: Input tensor. n: Number or indices of layers. reshape: Reshape to NCHWD format. return_prefix_tokens: Return prefix tokens. norm: Apply normalization. Returns: List of intermediate features. """ return self.forward_intermediates( x, n, return_prefix_tokens=return_prefix_tokens, norm=norm, output_fmt='NCHWD' if reshape else 'NLC', intermediates_only=True, ) def forward_features(self, x: torch.Tensor) -> torch.Tensor: """Forward pass through feature layers (embeddings, transformer blocks, post-transformer norm).""" x = self.patch_embed(x) x, rope = self._pos_embed(x) x = self.patch_drop(x) x = self.norm_pre(x) for blk in self.blocks: x = blk(x, rope=rope) x = self.norm(x) return x def pool(self, x: torch.Tensor, pool_type: Optional[str] = None) -> torch.Tensor: """Apply pooling to feature tokens. Args: x: Feature tensor. pool_type: Pooling type override. Returns: Pooled features. """ if self.attn_pool is not None: x = self.attn_pool(x) return x pool_type = self.global_pool if pool_type is None else pool_type x = global_pool_nlc( x, pool_type=pool_type, num_prefix_tokens=self.num_prefix_tokens, ) return x def forward_head(self, x: torch.Tensor, pre_logits: bool = False) -> torch.Tensor: """Forward pass through classifier head. Args: x: Feature tensor. pre_logits: Return features before final classifier. Returns: Output tensor. """ x = self.pool(x) x = self.fc_norm(x) x = self.head_drop(x) return x if pre_logits else self.head(x) def forward(self, x: torch.Tensor) -> torch.Tensor: x = self.forward_features(x) x = self.forward_head(x) return x @classmethod def from_pretrained( cls, checkpoint_path_or_url: Union[str, os.PathLike], verbose: bool = True, **kwargs ) -> 'VisionTransformer': """Load pretrained model weights from a local path or a URL.""" model = cls(**kwargs) def _is_url(path: str) -> bool: try: parsed = urlparse(str(path)) return parsed.scheme in ('http', 'https') except Exception: return False def _is_hf_url(path: str) -> bool: try: parsed = urlparse(str(path)) return 'huggingface.co' in parsed.netloc except Exception: return False if _is_hf_url(checkpoint_path_or_url): if verbose: print(f"Downloading pretrained weights from Hugging Face URL: {checkpoint_path_or_url}") # Extract repo_id and filename from the URL parsed = urlparse(checkpoint_path_or_url) parts = parsed.path.strip('/').split('/') repo_id = '/'.join(parts[:2]) # e.g., 'cclaess/SPECTRE' filename = parts[-1] # e.g., 'spectre_backbone_vit_large_patch16_128.pt' local_path = hf_hub_download(repo_id=repo_id, filename=filename) state_dict = load_state_dict_from_file(local_path, map_location='cpu') elif _is_url(checkpoint_path_or_url): if verbose: print(f"Downloading pretrained weights from URL: {checkpoint_path_or_url}") state_dict = torch.hub.load_state_dict_from_url( checkpoint_path_or_url, map_location='cpu', weights_only=False, progress=verbose) else: local_path = os.fspath(checkpoint_path_or_url) if not os.path.exists(local_path): raise FileNotFoundError(f"Checkpoint file not found: {local_path}") if verbose: print(f"Loading checkpoint from local path: {local_path}") state_dict = torch.load(local_path, map_location='cpu', weights_only=False) msg = model.load_state_dict(state_dict, strict=False) if verbose: print(f"Loaded pretrained weights with msg: {msg}") return model def vit_tiny_patch16_128( checkpoint_path_or_url: Optional[str] = None, **kwargs ) -> VisionTransformer: """ViT-Tiny model with 3D patch embedding, patch size [16, 16, 8] and input size [128, 128, 64]. """ kwargs = dict( img_size=(128, 128, 64), patch_size=(16, 16, 8), embed_dim=192, depth=12, num_heads=2, mlp_ratio=4, qkv_bias=True, norm_layer=nn.LayerNorm, **kwargs, ) if checkpoint_path_or_url is not None: return VisionTransformer.from_pretrained(checkpoint_path_or_url, **kwargs) return VisionTransformer(**kwargs) def vit_small_patch16_128( checkpoint_path_or_url: Optional[str] = None, **kwargs ) -> VisionTransformer: """ViT-Small model with 3D patch embedding, patch size [16, 16, 8] and input size [128, 128, 64]. """ kwargs = dict( img_size=(128, 128, 64), patch_size=(16, 16, 8), embed_dim=384, depth=12, num_heads=4, mlp_ratio=4, qkv_bias=True, norm_layer=nn.LayerNorm, **kwargs, ) if checkpoint_path_or_url is not None: return VisionTransformer.from_pretrained(checkpoint_path_or_url, **kwargs) return VisionTransformer(**kwargs) def vit_base_patch16_128( checkpoint_path_or_url: Optional[str] = None, **kwargs ) -> VisionTransformer: """ViT-Base model with 3D patch embedding, patch size [16, 16, 8] and input size [128, 128, 64]. """ kwargs = dict( img_size=(128, 128, 64), patch_size=(16, 16, 8), embed_dim=768, depth=12, num_heads=8, mlp_ratio=4, qkv_bias=True, norm_layer=nn.LayerNorm, **kwargs, ) if checkpoint_path_or_url is not None: return VisionTransformer.from_pretrained(checkpoint_path_or_url, **kwargs) return VisionTransformer(**kwargs) def vit_base_patch16_256( pretrained_weights: Optional[str] = None, **kwargs ) -> VisionTransformer: """ViT-Base model with 3D patch embedding, patch size [16, 16, 8] and input size [256, 256, 128]. """ kwargs = dict( img_size=(256, 256, 128), patch_size=(16, 16, 8), embed_dim=768, depth=12, num_heads=8, mlp_ratio=4, qkv_bias=True, norm_layer=nn.LayerNorm, **kwargs, ) if pretrained_weights is not None: return VisionTransformer.from_pretrained(pretrained_weights, **kwargs) return VisionTransformer(**kwargs) def vit_base_patch32_128( checkpoint_path_or_url: Optional[str] = None, **kwargs ) -> VisionTransformer: """ViT-Base model with 3D patch embedding, patch size [32, 32, 16] and input size [128, 128, 64]. """ kwargs = dict( img_size=(128, 128, 64), patch_size=(32, 32, 16), embed_dim=768, depth=12, num_heads=8, mlp_ratio=4, qkv_bias=True, norm_layer=nn.LayerNorm, **kwargs, ) if checkpoint_path_or_url is not None: return VisionTransformer.from_pretrained(checkpoint_path_or_url, **kwargs) return VisionTransformer(**kwargs) def vit_large_patch16_128( checkpoint_path_or_url: Optional[str] = None, **kwargs ) -> VisionTransformer: """ViT-Large model with 3D patch embedding, patch size [16, 16, 8] and input size [128, 128, 64]. """ kwargs = dict( img_size=(128, 128, 64), patch_size=(16, 16, 8), embed_dim=1080, depth=24, num_heads=12, mlp_ratio=4, qkv_bias=True, norm_layer=nn.LayerNorm, **kwargs, ) if checkpoint_path_or_url is not None: return VisionTransformer.from_pretrained(checkpoint_path_or_url, **kwargs) return VisionTransformer(**kwargs) def vit_large_patch16_256( pretrained_weights: Optional[str] = None, **kwargs ) -> VisionTransformer: """ViT-Large model with 3D patch embedding, patch size [16, 16, 8] and input size [128, 128, 64]. """ kwargs = dict( img_size=(256, 256, 128), patch_size=(16, 16, 8), embed_dim=1080, depth=24, num_heads=12, mlp_ratio=4, qkv_bias=True, norm_layer=nn.LayerNorm, **kwargs, ) if pretrained_weights is not None: return VisionTransformer.from_pretrained(pretrained_weights, **kwargs) return VisionTransformer(**kwargs) def vit_large_patch16_320( pretrained_weights: Optional[str] = None, **kwargs ) -> VisionTransformer: """ViT-Large model with 3D patch embedding, patch size [16, 16, 8] and input size [320, 320, 128]. """ kwargs = dict( img_size=(320, 320, 128), patch_size=(16, 16, 8), embed_dim=1080, depth=24, num_heads=12, mlp_ratio=4, qkv_bias=True, norm_layer=nn.LayerNorm, **kwargs, ) if pretrained_weights is not None: return VisionTransformer.from_pretrained(pretrained_weights, **kwargs) return VisionTransformer(**kwargs) def vit_large_patch32_128( checkpoint_path_or_url: Optional[str] = None, **kwargs ) -> VisionTransformer: """ViT-Large model with 3D patch embedding, patch size [32, 32, 16] and input size [128, 128, 64]. """ kwargs = dict( img_size=(128, 128, 64), patch_size=(32, 32, 16), embed_dim=1080, depth=24, num_heads=12, mlp_ratio=4, qkv_bias=True, norm_layer=nn.LayerNorm, **kwargs, ) if checkpoint_path_or_url is not None: return VisionTransformer.from_pretrained(checkpoint_path_or_url, **kwargs) return VisionTransformer(**kwargs)