Feature Extraction
Transformers
Safetensors
English
spectre
medical-imaging
ct-scan
3d
vision-transformer
self-supervised-learning
foundation-model
radiology
custom_code
Instructions to use cclaess/SPECTRE-Large with libraries, inference providers, notebooks, and local apps. Follow these links to get started.
- Libraries
- Transformers
How to use cclaess/SPECTRE-Large with Transformers:
# Use a pipeline as a high-level helper from transformers import pipeline pipe = pipeline("feature-extraction", model="cclaess/SPECTRE-Large", trust_remote_code=True)# Load model directly from transformers import AutoModel model = AutoModel.from_pretrained("cclaess/SPECTRE-Large", trust_remote_code=True, dtype="auto") - Notebooks
- Google Colab
- Kaggle
File size: 951 Bytes
8b41845 | 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 | import torch
import torch.nn as nn
import torch.nn.functional as F
from timm.layers.fast_norm import is_fast_norm, fast_layer_norm
class LayerNorm3d(nn.LayerNorm):
""" LayerNorm for channels of '3D' spatial NCHWD tensors """
_fast_norm: torch.jit.Final[bool]
def __init__(self, num_channels, eps=1e-6, affine=True):
super().__init__(num_channels, eps=eps, elementwise_affine=affine)
self._fast_norm = is_fast_norm() # Assuming is_fast_norm() is defined somewhere
def forward(self, x: torch.Tensor) -> torch.Tensor:
x = x.permute(0, 2, 3, 4, 1) # Permute to NCDHW format
if self._fast_norm:
x = fast_layer_norm(x, self.normalized_shape, self.weight, self.bias, self.eps)
else:
x = F.layer_norm(x, self.normalized_shape, self.weight, self.bias, self.eps)
x = x.permute(0, 4, 1, 2, 3) # Permute back to NCHWD format
return x
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