| { |
| "architecture": "Conv4_FC3", |
| "multi_network": false, |
| "dropout": 0.0, |
| "latent_space_dimension": 64, |
| "latent_space_size": 2, |
| "selection_metrics": [ |
| "loss" |
| ], |
| "label": "diagnosis", |
| "selection_threshold": 0.0, |
| "gpu": true, |
| "n_proc": 32, |
| "batch_size": 32, |
| "evaluation_steps": 20, |
| "seed": 0, |
| "deterministic": false, |
| "compensation": "memory", |
| "transfer_path": "../../autoencoders/exp3/maps", |
| "transfer_selection_metric": "loss", |
| "use_extracted_features": false, |
| "multi_cohort": false, |
| "diagnoses": [ |
| "AD", |
| "CN" |
| ], |
| "baseline": true, |
| "normalize": true, |
| "data_augmentation": false, |
| "sampler": "random", |
| "n_splits": 5, |
| "epochs": 200, |
| "learning_rate": 1e-05, |
| "weight_decay": 0.0001, |
| "patience": 10, |
| "tolerance": 0.0, |
| "accumulation_steps": 1, |
| "optimizer": "Adam", |
| "preprocessing_dict": { |
| "preprocessing": "t1-linear", |
| "mode": "roi", |
| "use_uncropped_image": false, |
| "roi_list": [ |
| "leftHippocampusBox", |
| "rightHippocampusBox" |
| ], |
| "uncropped_roi": false, |
| "prepare_dl": false, |
| "file_type": { |
| "pattern": "*space-MNI152NLin2009cSym_desc-Crop_res-1x1x1_T1w.nii.gz", |
| "description": "T1W Image registered using t1-linear and cropped (matrix size 169\u00d7208\u00d7179, 1 mm isotropic voxels)", |
| "needed_pipeline": "t1-linear" |
| } |
| }, |
| "mode": "roi", |
| "network_task": "classification", |
| "caps_directory": "$WORK/../commun/datasets/adni/caps/caps_v2021/", |
| "tsv_path": "$WORK/Aramis_tools/ClinicaDL_tools/experiments_ADDL/data/ADNI/train", |
| "validation": "KFoldSplit", |
| "num_networks": 2, |
| "label_code": { |
| "AD": 0, |
| "CN": 1 |
| }, |
| "output_size": 2, |
| "input_size": [ |
| 1, |
| 50, |
| 50, |
| 50 |
| ] |
| } |
|
|
