Add CropVLM model card and code
Browse files- .gitattributes +3 -0
- .gitignore +10 -0
- README.md +176 -3
- cropvlm/__init__.py +3 -0
- cropvlm/model.py +139 -0
- docs/figures/agri_semantics_coverage.png +3 -0
- docs/figures/cropvlm_framework.png +3 -0
- docs/figures/semantic_annotation_examples.png +3 -0
- examples/cacao.png +0 -0
- examples/cauliflower.png +0 -0
- examples/olive.png +0 -0
- examples/selection_metadata.json +51 -0
- examples/sugarcane.png +0 -0
- examples/sunflower.png +0 -0
- models/.gitkeep +0 -0
- outputs/.gitkeep +0 -0
- requirements.txt +13 -0
- scripts/evaluate_zero_shot.py +391 -0
- scripts/gradio_demo.py +120 -0
.gitattributes
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models/*.pth
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README.md
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# CropVLM: A Domain-Adapted Vision-Language Model for Open-Set Crop Analysis
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CropVLM is a CLIP-based zero-shot image classifier adapted for crop and fruit recognition. It compares one image embedding against text embeddings for candidate class names, then returns the class with the highest cosine similarity.
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This repository contains:
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- a simple CropVLM Python loader,
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- a Gradio demo for classifying one image,
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- a zero-shot evaluation script for ImageFolder-style datasets,
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- five strategically selected high-margin example images in `examples/`.
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## Agri-Semantics Data
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CropVLM is adapted with dense agricultural image-text supervision. The Agri-Semantics dataset spans 37 crop classes across fruits, vegetables, grains, and industrial crops, with examples covering visual diversity such as ripeness levels, varieties, and growth stages.
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The generated captions encode crop identity together with phenotypic cues such as ripeness, count, color, and spatial position.
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## Zero-Shot Classification Comparison
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We evaluate CropVLM against CLIP-based baselines by encoding each crop class name once, encoding each test image, and assigning the class with the highest cosine similarity in the shared image-text embedding space. The table reports results on the held-out 37-class crop test split.
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| Model | Overall Accuracy (%) | Per-Class Mean +/- Std (%) |
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|---|---:|---:|
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| SigLIP 2 | 3.43 | 3.43 +/- 16.91 |
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| AgriCLIP | 4.04 | 4.04 +/- 14.61 |
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| RemoteCLIP | 42.52 | 42.52 +/- 27.57 |
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| BioCLIP | 48.33 | 48.34 +/- 34.95 |
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| BioTrove-CLIP | 51.07 | 51.07 +/- 36.20 |
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| BioCLIP 2 | 67.74 | 67.74 +/- 31.17 |
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| OpenAI CLIP ViT-B/32 | 70.24 | 70.24 +/- 28.83 |
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| **CropVLM** | **72.51** | **72.51 +/- 29.71** |
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## Installation
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Create an environment and install the dependencies:
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```bash
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conda create -n cropvlm python=3.10 -y
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conda activate cropvlm
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pip install -r requirements.txt
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```
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For GPU inference, install the CUDA build of PyTorch that matches your system before installing the remaining dependencies. For example:
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```bash
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pip install --index-url https://download.pytorch.org/whl/cu121 torch torchvision
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pip install -r requirements.txt
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```
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## Checkpoint
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This Hugging Face repository includes the CropVLM checkpoint:
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```text
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models/CropCLIP_FullDataset_Acc_0.75.pth
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```
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You can download it with `huggingface_hub`:
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```python
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from huggingface_hub import hf_hub_download
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checkpoint = hf_hub_download(
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repo_id="boudiafA/CropVLM",
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filename="models/CropCLIP_FullDataset_Acc_0.75.pth",
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)
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```
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You can also clone the repository and use the local checkpoint path with `--checkpoint` or `--cropvlm-checkpoint`.
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## Gradio Demo
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Run:
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```bash
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python scripts/gradio_demo.py \
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--checkpoint models/CropCLIP_FullDataset_Acc_0.75.pth
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```
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Then open:
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```text
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http://127.0.0.1:7860
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```
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The demo lets you upload any image and edit the candidate class names. The default class list is:
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```text
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apple, avocado, banana, barley, bell pepper, broccoli, cacao, canola,
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cauliflower, cherry, chilli, coconut, coffee, corn, cotton, cucumber,
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eggplant, kiwi, lemon, mango, olive, orange, pear, peas, pineapple,
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pomegranate, potato, pumpkin, rice, soyabean, strawberry, sugarcane,
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sunflower, tea, tomato, watermelon, wheat
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```
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The included examples are `cacao`, `olive`, `cauliflower`, `sugarcane`, and `sunflower`. They were selected from correct CropVLM predictions with a large cosine-similarity gap between the correct class and the second-best class. The selection details are in `examples/selection_metadata.json`.
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## Use CropVLM In Python
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```python
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from PIL import Image
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from cropvlm import load_cropvlm
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classifier = load_cropvlm("models/CropCLIP_FullDataset_Acc_0.75.pth")
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image = Image.open("examples/cacao.png")
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for label, score in classifier.predict(image, top_k=5):
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print(label, score)
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```
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## Evaluate Zero-Shot Accuracy
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The dataset should be arranged like `torchvision.datasets.ImageFolder`:
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```text
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Crop_Dataset_testing/
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apple/
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image_001.png
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banana/
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image_001.png
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...
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```
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Run CropVLM and the supported comparison CLIP models:
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```bash
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python scripts/evaluate_zero_shot.py \
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--dataset /mnt/e/Desktop/Datasets/FruitDataset/Crop_Dataset_testing \
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--cropvlm-checkpoint models/CropCLIP_FullDataset_Acc_0.75.pth \
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--output outputs/zero_shot_results.json \
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--batch-size 64
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```
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By default, the script evaluates:
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```text
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cropvlm
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openai_clip_vit_b32
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bioclip
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bioclip2
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biotrove_clip
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remoteclip
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siglip2
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```
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You can choose a subset:
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```bash
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python scripts/evaluate_zero_shot.py \
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--dataset /path/to/test_dataset \
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--models cropvlm openai_clip_vit_b32 bioclip2 \
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--output outputs/subset_results.json
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```
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The output JSON includes:
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- `models`: compact per-model scores,
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- `model_results`: full per-model details keyed by model name,
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- `results`: full per-model details as a list,
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- per-class accuracy,
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- per-class accuracy mean and standard deviation,
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- confusion matrix,
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- optional per-image predictions when `--save-predictions` is used.
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The mean and standard deviation are computed across per-class accuracies.
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## Notes
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- BioCLIP, BioCLIP2, BioTrove-CLIP, RemoteCLIP, and SigLIP2 weights are downloaded automatically by their libraries when first used.
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- The score used for classification is cosine similarity between normalized image and text embeddings.
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cropvlm/__init__.py
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from .model import CROP_CLASSES, CropVLMClassifier, load_cropvlm
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__all__ = ["CROP_CLASSES", "CropVLMClassifier", "load_cropvlm"]
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cropvlm/model.py
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from pathlib import Path
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from typing import Dict, Iterable, List, Sequence, Tuple
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import torch
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import torch.nn.functional as F
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from PIL import Image
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CROP_CLASSES = [
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"apple",
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"avocado",
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"banana",
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"barley",
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"bell pepper",
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"broccoli",
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"cacao",
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"canola",
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"cauliflower",
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"cherry",
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"chilli",
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"coconut",
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"coffee",
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"corn",
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"cotton",
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"cucumber",
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"eggplant",
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"kiwi",
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"lemon",
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"mango",
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"olive",
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"orange",
|
| 32 |
+
"pear",
|
| 33 |
+
"peas",
|
| 34 |
+
"pineapple",
|
| 35 |
+
"pomegranate",
|
| 36 |
+
"potato",
|
| 37 |
+
"pumpkin",
|
| 38 |
+
"rice",
|
| 39 |
+
"soyabean",
|
| 40 |
+
"strawberry",
|
| 41 |
+
"sugarcane",
|
| 42 |
+
"sunflower",
|
| 43 |
+
"tea",
|
| 44 |
+
"tomato",
|
| 45 |
+
"watermelon",
|
| 46 |
+
"wheat",
|
| 47 |
+
]
|
| 48 |
+
|
| 49 |
+
|
| 50 |
+
def _normalize(features: torch.Tensor) -> torch.Tensor:
|
| 51 |
+
return F.normalize(features.float(), dim=-1)
|
| 52 |
+
|
| 53 |
+
|
| 54 |
+
class CropVLMClassifier:
|
| 55 |
+
"""Small zero-shot wrapper around the CropVLM/OpenAI CLIP ViT-B/32 model."""
|
| 56 |
+
|
| 57 |
+
def __init__(
|
| 58 |
+
self,
|
| 59 |
+
checkpoint: str,
|
| 60 |
+
class_names: Sequence[str] = CROP_CLASSES,
|
| 61 |
+
device: str | None = None,
|
| 62 |
+
prompt_template: str = "{}",
|
| 63 |
+
):
|
| 64 |
+
import clip
|
| 65 |
+
|
| 66 |
+
self.clip = clip
|
| 67 |
+
self.device = torch.device(device or ("cuda" if torch.cuda.is_available() else "cpu"))
|
| 68 |
+
self.prompt_template = prompt_template
|
| 69 |
+
self.class_names = list(class_names)
|
| 70 |
+
|
| 71 |
+
checkpoint_path = Path(checkpoint)
|
| 72 |
+
if not checkpoint_path.exists():
|
| 73 |
+
raise FileNotFoundError(f"CropVLM checkpoint not found: {checkpoint_path}")
|
| 74 |
+
|
| 75 |
+
self.model, self.preprocess = clip.load(
|
| 76 |
+
"ViT-B/32",
|
| 77 |
+
device=str(self.device),
|
| 78 |
+
download_root=str(Path.home() / ".cache" / "clip"),
|
| 79 |
+
)
|
| 80 |
+
ckpt = torch.load(checkpoint_path, map_location=self.device)
|
| 81 |
+
state = ckpt.get("model_state_dict", ckpt.get("state_dict", ckpt))
|
| 82 |
+
self.model.load_state_dict(state)
|
| 83 |
+
self.model.eval()
|
| 84 |
+
self.set_classes(self.class_names)
|
| 85 |
+
|
| 86 |
+
def set_classes(self, class_names: Sequence[str]) -> None:
|
| 87 |
+
self.class_names = [c.strip() for c in class_names if c.strip()]
|
| 88 |
+
prompts = [self.prompt_template.format(c) for c in self.class_names]
|
| 89 |
+
tokens = self.clip.tokenize(prompts, truncate=True).to(self.device)
|
| 90 |
+
with torch.no_grad():
|
| 91 |
+
self.text_features = _normalize(self.model.encode_text(tokens))
|
| 92 |
+
|
| 93 |
+
def encode_image(self, image: Image.Image) -> torch.Tensor:
|
| 94 |
+
image = image.convert("RGB")
|
| 95 |
+
batch = self.preprocess(image).unsqueeze(0).to(self.device)
|
| 96 |
+
with torch.no_grad():
|
| 97 |
+
return _normalize(self.model.encode_image(batch))
|
| 98 |
+
|
| 99 |
+
def predict(self, image: Image.Image, top_k: int = 5) -> List[Tuple[str, float]]:
|
| 100 |
+
return [(label, probability) for label, probability, _ in self.predict_with_scores(image, top_k=top_k)]
|
| 101 |
+
|
| 102 |
+
def predict_scores(self, image: Image.Image) -> Dict[str, float]:
|
| 103 |
+
image_features = self.encode_image(image)
|
| 104 |
+
logits = (image_features @ self.text_features.T).squeeze(0)
|
| 105 |
+
return {name: float(score) for name, score in zip(self.class_names, logits.tolist())}
|
| 106 |
+
|
| 107 |
+
def predict_with_scores(self, image: Image.Image, top_k: int = 5) -> List[Tuple[str, float, float]]:
|
| 108 |
+
image_features = self.encode_image(image)
|
| 109 |
+
cosine_scores = (image_features @ self.text_features.T).squeeze(0)
|
| 110 |
+
logit_scale = self.model.logit_scale.exp().clamp(max=100)
|
| 111 |
+
probabilities = (logit_scale * cosine_scores).softmax(dim=-1)
|
| 112 |
+
k = min(top_k, len(self.class_names))
|
| 113 |
+
probs, indices = probabilities.topk(k)
|
| 114 |
+
return [
|
| 115 |
+
(self.class_names[idx], float(prob), float(cosine_scores[idx]))
|
| 116 |
+
for prob, idx in zip(probs.tolist(), indices.tolist())
|
| 117 |
+
]
|
| 118 |
+
|
| 119 |
+
|
| 120 |
+
def load_cropvlm(
|
| 121 |
+
checkpoint: str,
|
| 122 |
+
class_names: Sequence[str] = CROP_CLASSES,
|
| 123 |
+
device: str | None = None,
|
| 124 |
+
prompt_template: str = "{}",
|
| 125 |
+
) -> CropVLMClassifier:
|
| 126 |
+
return CropVLMClassifier(
|
| 127 |
+
checkpoint=checkpoint,
|
| 128 |
+
class_names=class_names,
|
| 129 |
+
device=device,
|
| 130 |
+
prompt_template=prompt_template,
|
| 131 |
+
)
|
| 132 |
+
|
| 133 |
+
|
| 134 |
+
def parse_class_names(text: str | Iterable[str]) -> List[str]:
|
| 135 |
+
if isinstance(text, str):
|
| 136 |
+
raw = text.replace(",", "\n").splitlines()
|
| 137 |
+
else:
|
| 138 |
+
raw = list(text)
|
| 139 |
+
return [name.strip() for name in raw if name.strip()]
|
docs/figures/agri_semantics_coverage.png
ADDED
|
Git LFS Details
|
docs/figures/cropvlm_framework.png
ADDED
|
Git LFS Details
|
docs/figures/semantic_annotation_examples.png
ADDED
|
Git LFS Details
|
examples/cacao.png
ADDED
|
examples/cauliflower.png
ADDED
|
examples/olive.png
ADDED
|
examples/selection_metadata.json
ADDED
|
@@ -0,0 +1,51 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"selection_method": "CropVLM was run on the full testing dataset. Examples were selected from correct predictions by descending cosine margin between the correct class and the second-highest class, preferring less-common crops and keeping at most one image per class.",
|
| 3 |
+
"score_type": "cosine similarity after L2-normalizing image and text embeddings",
|
| 4 |
+
"examples": [
|
| 5 |
+
{
|
| 6 |
+
"file": "cacao.png",
|
| 7 |
+
"source": "/mnt/e/Desktop/Datasets/FruitDataset/Crop_Dataset_testing/cacao/cacao_01171.png",
|
| 8 |
+
"class": "cacao",
|
| 9 |
+
"top1_score": 0.336548,
|
| 10 |
+
"second_class": "mango",
|
| 11 |
+
"second_score": 0.218446,
|
| 12 |
+
"margin": 0.118102
|
| 13 |
+
},
|
| 14 |
+
{
|
| 15 |
+
"file": "olive.png",
|
| 16 |
+
"source": "/mnt/e/Desktop/Datasets/FruitDataset/Crop_Dataset_testing/olive/olive_01140.png",
|
| 17 |
+
"class": "olive",
|
| 18 |
+
"top1_score": 0.329435,
|
| 19 |
+
"second_class": "peas",
|
| 20 |
+
"second_score": 0.215531,
|
| 21 |
+
"margin": 0.113904
|
| 22 |
+
},
|
| 23 |
+
{
|
| 24 |
+
"file": "cauliflower.png",
|
| 25 |
+
"source": "/mnt/e/Desktop/Datasets/FruitDataset/Crop_Dataset_testing/cauliflower/cauliflower_01107.png",
|
| 26 |
+
"class": "cauliflower",
|
| 27 |
+
"top1_score": 0.355567,
|
| 28 |
+
"second_class": "cucumber",
|
| 29 |
+
"second_score": 0.246063,
|
| 30 |
+
"margin": 0.109503
|
| 31 |
+
},
|
| 32 |
+
{
|
| 33 |
+
"file": "sugarcane.png",
|
| 34 |
+
"source": "/mnt/e/Desktop/Datasets/FruitDataset/Crop_Dataset_testing/sugarcane/sugarcane_01134.png",
|
| 35 |
+
"class": "sugarcane",
|
| 36 |
+
"top1_score": 0.334631,
|
| 37 |
+
"second_class": "rice",
|
| 38 |
+
"second_score": 0.226767,
|
| 39 |
+
"margin": 0.107864
|
| 40 |
+
},
|
| 41 |
+
{
|
| 42 |
+
"file": "sunflower.png",
|
| 43 |
+
"source": "/mnt/e/Desktop/Datasets/FruitDataset/Crop_Dataset_testing/sunflower/sunflower_01425.png",
|
| 44 |
+
"class": "sunflower",
|
| 45 |
+
"top1_score": 0.309900,
|
| 46 |
+
"second_class": "pineapple",
|
| 47 |
+
"second_score": 0.208610,
|
| 48 |
+
"margin": 0.101291
|
| 49 |
+
}
|
| 50 |
+
]
|
| 51 |
+
}
|
examples/sugarcane.png
ADDED
|
examples/sunflower.png
ADDED
|
models/.gitkeep
ADDED
|
File without changes
|
outputs/.gitkeep
ADDED
|
File without changes
|
requirements.txt
ADDED
|
@@ -0,0 +1,13 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
torch
|
| 2 |
+
torchvision
|
| 3 |
+
ftfy
|
| 4 |
+
regex
|
| 5 |
+
tqdm
|
| 6 |
+
Pillow
|
| 7 |
+
numpy
|
| 8 |
+
pandas
|
| 9 |
+
gradio
|
| 10 |
+
open_clip_torch
|
| 11 |
+
transformers
|
| 12 |
+
huggingface_hub
|
| 13 |
+
git+https://github.com/openai/CLIP.git
|
scripts/evaluate_zero_shot.py
ADDED
|
@@ -0,0 +1,391 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
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|
|
|
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|
|
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|
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|
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|
|
|
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|
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|
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|
| 1 |
+
import argparse
|
| 2 |
+
import json
|
| 3 |
+
import math
|
| 4 |
+
import time
|
| 5 |
+
import traceback
|
| 6 |
+
from datetime import datetime, timezone
|
| 7 |
+
from pathlib import Path
|
| 8 |
+
from typing import Any, Dict, List, Optional, Sequence, Tuple
|
| 9 |
+
|
| 10 |
+
import torch
|
| 11 |
+
import torch.nn.functional as F
|
| 12 |
+
from PIL import Image
|
| 13 |
+
from torch.utils.data import DataLoader, Dataset
|
| 14 |
+
from tqdm import tqdm
|
| 15 |
+
|
| 16 |
+
|
| 17 |
+
IMAGE_EXTS = {".jpg", ".jpeg", ".png", ".bmp", ".webp"}
|
| 18 |
+
DEFAULT_MODELS = [
|
| 19 |
+
"cropvlm",
|
| 20 |
+
"openai_clip_vit_b32",
|
| 21 |
+
"bioclip",
|
| 22 |
+
"bioclip2",
|
| 23 |
+
"biotrove_clip",
|
| 24 |
+
"remoteclip",
|
| 25 |
+
"siglip2",
|
| 26 |
+
]
|
| 27 |
+
|
| 28 |
+
|
| 29 |
+
class ImageFolderPaths(Dataset):
|
| 30 |
+
def __init__(self, root: str):
|
| 31 |
+
self.root = Path(root)
|
| 32 |
+
self.classes = sorted([p.name for p in self.root.iterdir() if p.is_dir()])
|
| 33 |
+
self.class_to_idx = {name: idx for idx, name in enumerate(self.classes)}
|
| 34 |
+
self.samples: List[Tuple[Path, int]] = []
|
| 35 |
+
for class_name in self.classes:
|
| 36 |
+
for path in sorted((self.root / class_name).iterdir()):
|
| 37 |
+
if path.is_file() and path.suffix.lower() in IMAGE_EXTS:
|
| 38 |
+
self.samples.append((path, self.class_to_idx[class_name]))
|
| 39 |
+
|
| 40 |
+
def __len__(self) -> int:
|
| 41 |
+
return len(self.samples)
|
| 42 |
+
|
| 43 |
+
def __getitem__(self, idx: int):
|
| 44 |
+
path, label = self.samples[idx]
|
| 45 |
+
return Image.open(path).convert("RGB"), label, str(path)
|
| 46 |
+
|
| 47 |
+
|
| 48 |
+
def pil_collate(batch):
|
| 49 |
+
images, labels, paths = zip(*batch)
|
| 50 |
+
return list(images), torch.tensor(labels, dtype=torch.long), list(paths)
|
| 51 |
+
|
| 52 |
+
|
| 53 |
+
def display_name(class_name: str) -> str:
|
| 54 |
+
return class_name.replace("_", " ")
|
| 55 |
+
|
| 56 |
+
|
| 57 |
+
def normalize(features: torch.Tensor) -> torch.Tensor:
|
| 58 |
+
if isinstance(features, (tuple, list)):
|
| 59 |
+
features = features[0]
|
| 60 |
+
return F.normalize(features.float(), dim=-1)
|
| 61 |
+
|
| 62 |
+
|
| 63 |
+
class Adapter:
|
| 64 |
+
name = ""
|
| 65 |
+
family = ""
|
| 66 |
+
checkpoint: Optional[str] = None
|
| 67 |
+
load_message: Optional[str] = None
|
| 68 |
+
|
| 69 |
+
def encode_text(self, prompts: Sequence[str]) -> torch.Tensor:
|
| 70 |
+
raise NotImplementedError
|
| 71 |
+
|
| 72 |
+
def encode_images(self, images: Sequence[Image.Image]) -> torch.Tensor:
|
| 73 |
+
raise NotImplementedError
|
| 74 |
+
|
| 75 |
+
|
| 76 |
+
class OpenAIClipAdapter(Adapter):
|
| 77 |
+
def __init__(self, device: torch.device, checkpoint: Optional[str] = None):
|
| 78 |
+
import clip
|
| 79 |
+
|
| 80 |
+
self.name = "CropVLM" if checkpoint else "OpenAI CLIP ViT-B/32"
|
| 81 |
+
self.family = "openai_clip"
|
| 82 |
+
self.device = device
|
| 83 |
+
self.clip = clip
|
| 84 |
+
self.model, self.preprocess = clip.load("ViT-B/32", device=str(device))
|
| 85 |
+
if checkpoint:
|
| 86 |
+
checkpoint_path = Path(checkpoint)
|
| 87 |
+
if not checkpoint_path.exists():
|
| 88 |
+
raise FileNotFoundError(f"CropVLM checkpoint not found: {checkpoint_path}")
|
| 89 |
+
ckpt = torch.load(checkpoint_path, map_location=device)
|
| 90 |
+
state = ckpt.get("model_state_dict", ckpt.get("state_dict", ckpt))
|
| 91 |
+
self.model.load_state_dict(state)
|
| 92 |
+
self.checkpoint = str(checkpoint_path)
|
| 93 |
+
self.model.eval()
|
| 94 |
+
|
| 95 |
+
def encode_text(self, prompts: Sequence[str]) -> torch.Tensor:
|
| 96 |
+
tokens = self.clip.tokenize(list(prompts), truncate=True).to(self.device)
|
| 97 |
+
with torch.no_grad():
|
| 98 |
+
return normalize(self.model.encode_text(tokens))
|
| 99 |
+
|
| 100 |
+
def encode_images(self, images: Sequence[Image.Image]) -> torch.Tensor:
|
| 101 |
+
batch = torch.stack([self.preprocess(image) for image in images]).to(self.device)
|
| 102 |
+
with torch.no_grad():
|
| 103 |
+
return normalize(self.model.encode_image(batch))
|
| 104 |
+
|
| 105 |
+
|
| 106 |
+
class OpenClipAdapter(Adapter):
|
| 107 |
+
def __init__(
|
| 108 |
+
self,
|
| 109 |
+
model_name: str,
|
| 110 |
+
pretrained: Optional[str],
|
| 111 |
+
device: torch.device,
|
| 112 |
+
hf_checkpoint: Optional[Tuple[str, str]] = None,
|
| 113 |
+
):
|
| 114 |
+
import open_clip
|
| 115 |
+
|
| 116 |
+
self.name = model_name
|
| 117 |
+
self.family = "open_clip"
|
| 118 |
+
self.device = device
|
| 119 |
+
self.model_name = model_name
|
| 120 |
+
self.pretrained = pretrained
|
| 121 |
+
self.open_clip = open_clip
|
| 122 |
+
|
| 123 |
+
if hf_checkpoint:
|
| 124 |
+
from huggingface_hub import hf_hub_download
|
| 125 |
+
|
| 126 |
+
repo, filename = hf_checkpoint
|
| 127 |
+
checkpoint = hf_hub_download(repo, filename)
|
| 128 |
+
self.model, _, self.preprocess = open_clip.create_model_and_transforms(model_name, pretrained=None)
|
| 129 |
+
ckpt = torch.load(checkpoint, map_location="cpu")
|
| 130 |
+
state = ckpt.get("state_dict", ckpt.get("model_state_dict", ckpt)) if isinstance(ckpt, dict) else ckpt
|
| 131 |
+
if any(key.startswith("module.") for key in state):
|
| 132 |
+
state = {key.removeprefix("module."): value for key, value in state.items()}
|
| 133 |
+
self.load_message = str(self.model.load_state_dict(state, strict=False))
|
| 134 |
+
self.checkpoint = checkpoint
|
| 135 |
+
else:
|
| 136 |
+
self.model, _, self.preprocess = open_clip.create_model_and_transforms(
|
| 137 |
+
model_name,
|
| 138 |
+
pretrained=pretrained,
|
| 139 |
+
)
|
| 140 |
+
|
| 141 |
+
self.tokenizer = open_clip.get_tokenizer(model_name)
|
| 142 |
+
self.model.to(device).eval()
|
| 143 |
+
|
| 144 |
+
def encode_text(self, prompts: Sequence[str]) -> torch.Tensor:
|
| 145 |
+
tokens = self.tokenizer(list(prompts)).to(self.device)
|
| 146 |
+
with torch.no_grad():
|
| 147 |
+
return normalize(self.model.encode_text(tokens))
|
| 148 |
+
|
| 149 |
+
def encode_images(self, images: Sequence[Image.Image]) -> torch.Tensor:
|
| 150 |
+
batch = torch.stack([self.preprocess(image) for image in images]).to(self.device)
|
| 151 |
+
with torch.no_grad():
|
| 152 |
+
return normalize(self.model.encode_image(batch))
|
| 153 |
+
|
| 154 |
+
|
| 155 |
+
class Siglip2Adapter(Adapter):
|
| 156 |
+
def __init__(self, device: torch.device):
|
| 157 |
+
from transformers import AutoModel, AutoProcessor
|
| 158 |
+
|
| 159 |
+
self.name = "google/siglip2-base-patch16-224"
|
| 160 |
+
self.family = "transformers_siglip2"
|
| 161 |
+
self.device = device
|
| 162 |
+
self.processor = AutoProcessor.from_pretrained(self.name)
|
| 163 |
+
self.model = AutoModel.from_pretrained(self.name).to(device).eval()
|
| 164 |
+
|
| 165 |
+
def encode_text(self, prompts: Sequence[str]) -> torch.Tensor:
|
| 166 |
+
inputs = self.processor(text=list(prompts), padding=True, return_tensors="pt").to(self.device)
|
| 167 |
+
with torch.no_grad():
|
| 168 |
+
if hasattr(self.model, "get_text_features"):
|
| 169 |
+
features = self.model.get_text_features(**inputs)
|
| 170 |
+
else:
|
| 171 |
+
features = self.model(**inputs).text_embeds
|
| 172 |
+
return normalize(features)
|
| 173 |
+
|
| 174 |
+
def encode_images(self, images: Sequence[Image.Image]) -> torch.Tensor:
|
| 175 |
+
inputs = self.processor(images=list(images), return_tensors="pt").to(self.device)
|
| 176 |
+
with torch.no_grad():
|
| 177 |
+
if hasattr(self.model, "get_image_features"):
|
| 178 |
+
features = self.model.get_image_features(**inputs)
|
| 179 |
+
else:
|
| 180 |
+
features = self.model(**inputs).image_embeds
|
| 181 |
+
return normalize(features)
|
| 182 |
+
|
| 183 |
+
|
| 184 |
+
def build_adapter(model_key: str, device: torch.device, cropvlm_checkpoint: str) -> Adapter:
|
| 185 |
+
if model_key == "cropvlm":
|
| 186 |
+
return OpenAIClipAdapter(device, checkpoint=cropvlm_checkpoint)
|
| 187 |
+
if model_key == "openai_clip_vit_b32":
|
| 188 |
+
return OpenAIClipAdapter(device)
|
| 189 |
+
if model_key == "bioclip":
|
| 190 |
+
return OpenClipAdapter("hf-hub:imageomics/bioclip", None, device)
|
| 191 |
+
if model_key == "bioclip2":
|
| 192 |
+
return OpenClipAdapter("hf-hub:imageomics/bioclip-2", None, device)
|
| 193 |
+
if model_key == "biotrove_clip":
|
| 194 |
+
return OpenClipAdapter(
|
| 195 |
+
"ViT-B-16",
|
| 196 |
+
None,
|
| 197 |
+
device,
|
| 198 |
+
hf_checkpoint=("BGLab/BioTrove-CLIP", "biotroveclip-vit-b-16-from-bioclip-epoch-8.pt"),
|
| 199 |
+
)
|
| 200 |
+
if model_key == "remoteclip":
|
| 201 |
+
return OpenClipAdapter(
|
| 202 |
+
"ViT-B-32",
|
| 203 |
+
None,
|
| 204 |
+
device,
|
| 205 |
+
hf_checkpoint=("chendelong/RemoteCLIP", "RemoteCLIP-ViT-B-32.pt"),
|
| 206 |
+
)
|
| 207 |
+
if model_key == "siglip2":
|
| 208 |
+
return Siglip2Adapter(device)
|
| 209 |
+
raise KeyError(
|
| 210 |
+
f"Unknown model '{model_key}'. Supported models: {', '.join(DEFAULT_MODELS)}. "
|
| 211 |
+
"TULIP, EVA-CLIP, and LongCLIP are intentionally excluded."
|
| 212 |
+
)
|
| 213 |
+
|
| 214 |
+
|
| 215 |
+
def per_class_stats(per_class: Dict[str, Dict[str, Any]]) -> Dict[str, Any]:
|
| 216 |
+
values = [item["accuracy"] for item in per_class.values() if item.get("accuracy") is not None]
|
| 217 |
+
if not values:
|
| 218 |
+
return {
|
| 219 |
+
"per_class_accuracy_mean": None,
|
| 220 |
+
"per_class_accuracy_std": None,
|
| 221 |
+
"per_class_accuracy_std_population": None,
|
| 222 |
+
"num_classes_with_accuracy": 0,
|
| 223 |
+
}
|
| 224 |
+
mean = sum(values) / len(values)
|
| 225 |
+
sample_std = math.sqrt(sum((x - mean) ** 2 for x in values) / (len(values) - 1)) if len(values) > 1 else 0.0
|
| 226 |
+
population_std = math.sqrt(sum((x - mean) ** 2 for x in values) / len(values))
|
| 227 |
+
return {
|
| 228 |
+
"per_class_accuracy_mean": mean,
|
| 229 |
+
"per_class_accuracy_std": sample_std,
|
| 230 |
+
"per_class_accuracy_std_population": population_std,
|
| 231 |
+
"num_classes_with_accuracy": len(values),
|
| 232 |
+
}
|
| 233 |
+
|
| 234 |
+
|
| 235 |
+
def evaluate_model(args: argparse.Namespace, dataset: ImageFolderPaths, model_key: str) -> Dict[str, Any]:
|
| 236 |
+
started_at = time.time()
|
| 237 |
+
device = torch.device(args.device or ("cuda" if torch.cuda.is_available() else "cpu"))
|
| 238 |
+
prompts = [args.prompt_template.format(display_name(class_name)) for class_name in dataset.classes]
|
| 239 |
+
result: Dict[str, Any] = {
|
| 240 |
+
"model_key": model_key,
|
| 241 |
+
"dataset": str(dataset.root),
|
| 242 |
+
"num_images": len(dataset),
|
| 243 |
+
"num_classes": len(dataset.classes),
|
| 244 |
+
"classes": dataset.classes,
|
| 245 |
+
"class_prompts": dict(zip(dataset.classes, prompts)),
|
| 246 |
+
"prompt_template": args.prompt_template,
|
| 247 |
+
"device": str(device),
|
| 248 |
+
"status": "started",
|
| 249 |
+
"started_at_unix": started_at,
|
| 250 |
+
}
|
| 251 |
+
|
| 252 |
+
try:
|
| 253 |
+
adapter = build_adapter(model_key, device, args.cropvlm_checkpoint)
|
| 254 |
+
result["model_name"] = adapter.name
|
| 255 |
+
result["family"] = adapter.family
|
| 256 |
+
result["checkpoint"] = adapter.checkpoint
|
| 257 |
+
result["load_message"] = adapter.load_message
|
| 258 |
+
text_features = adapter.encode_text(prompts).to(device)
|
| 259 |
+
|
| 260 |
+
loader = DataLoader(
|
| 261 |
+
dataset,
|
| 262 |
+
batch_size=args.batch_size,
|
| 263 |
+
shuffle=False,
|
| 264 |
+
num_workers=args.num_workers,
|
| 265 |
+
collate_fn=pil_collate,
|
| 266 |
+
)
|
| 267 |
+
|
| 268 |
+
class_total = [0 for _ in dataset.classes]
|
| 269 |
+
class_correct = [0 for _ in dataset.classes]
|
| 270 |
+
confusion = [[0 for _ in dataset.classes] for _ in dataset.classes]
|
| 271 |
+
predictions: List[Dict[str, Any]] = []
|
| 272 |
+
correct = 0
|
| 273 |
+
|
| 274 |
+
for images, labels, paths in tqdm(loader, desc=model_key):
|
| 275 |
+
image_features = adapter.encode_images(images)
|
| 276 |
+
logits = image_features @ text_features.T
|
| 277 |
+
pred = logits.argmax(dim=-1).detach().cpu()
|
| 278 |
+
scores = logits.max(dim=-1).values.detach().cpu()
|
| 279 |
+
for true_idx, pred_idx, score, path in zip(labels.tolist(), pred.tolist(), scores.tolist(), paths):
|
| 280 |
+
class_total[true_idx] += 1
|
| 281 |
+
class_correct[true_idx] += int(true_idx == pred_idx)
|
| 282 |
+
confusion[true_idx][pred_idx] += 1
|
| 283 |
+
correct += int(true_idx == pred_idx)
|
| 284 |
+
if args.save_predictions:
|
| 285 |
+
predictions.append(
|
| 286 |
+
{
|
| 287 |
+
"path": path,
|
| 288 |
+
"true_class": dataset.classes[true_idx],
|
| 289 |
+
"pred_class": dataset.classes[pred_idx],
|
| 290 |
+
"correct": true_idx == pred_idx,
|
| 291 |
+
"score": float(score),
|
| 292 |
+
}
|
| 293 |
+
)
|
| 294 |
+
|
| 295 |
+
per_class = {}
|
| 296 |
+
for idx, class_name in enumerate(dataset.classes):
|
| 297 |
+
total = class_total[idx]
|
| 298 |
+
per_class[class_name] = {
|
| 299 |
+
"correct": class_correct[idx],
|
| 300 |
+
"total": total,
|
| 301 |
+
"accuracy": class_correct[idx] / total if total else None,
|
| 302 |
+
}
|
| 303 |
+
|
| 304 |
+
result.update(
|
| 305 |
+
{
|
| 306 |
+
"status": "ok",
|
| 307 |
+
"accuracy": correct / len(dataset) if len(dataset) else None,
|
| 308 |
+
"correct": correct,
|
| 309 |
+
"per_class": per_class,
|
| 310 |
+
"confusion_matrix": confusion,
|
| 311 |
+
"predictions": predictions if args.save_predictions else None,
|
| 312 |
+
}
|
| 313 |
+
)
|
| 314 |
+
result.update(per_class_stats(per_class))
|
| 315 |
+
except Exception as exc:
|
| 316 |
+
result.update(
|
| 317 |
+
{
|
| 318 |
+
"status": "failed",
|
| 319 |
+
"error_type": type(exc).__name__,
|
| 320 |
+
"error": str(exc),
|
| 321 |
+
"traceback": traceback.format_exc(),
|
| 322 |
+
}
|
| 323 |
+
)
|
| 324 |
+
|
| 325 |
+
result["elapsed_seconds"] = time.time() - started_at
|
| 326 |
+
return result
|
| 327 |
+
|
| 328 |
+
|
| 329 |
+
def write_json(path: Path, data: Dict[str, Any]) -> None:
|
| 330 |
+
path.parent.mkdir(parents=True, exist_ok=True)
|
| 331 |
+
with open(path, "w") as f:
|
| 332 |
+
json.dump(data, f, indent=2)
|
| 333 |
+
|
| 334 |
+
|
| 335 |
+
def main():
|
| 336 |
+
parser = argparse.ArgumentParser()
|
| 337 |
+
parser.add_argument("--dataset", required=True, help="ImageFolder-style dataset root.")
|
| 338 |
+
parser.add_argument("--output", default="outputs/zero_shot_results.json")
|
| 339 |
+
parser.add_argument("--cropvlm-checkpoint", default="models/CropCLIP_FullDataset_Acc_0.75.pth")
|
| 340 |
+
parser.add_argument("--models", nargs="+", default=DEFAULT_MODELS)
|
| 341 |
+
parser.add_argument("--device", default=None)
|
| 342 |
+
parser.add_argument("--batch-size", type=int, default=64)
|
| 343 |
+
parser.add_argument("--num-workers", type=int, default=2)
|
| 344 |
+
parser.add_argument("--prompt-template", default="{}")
|
| 345 |
+
parser.add_argument("--save-predictions", action="store_true")
|
| 346 |
+
args = parser.parse_args()
|
| 347 |
+
|
| 348 |
+
excluded = {"tulip", "eva_clip", "eva_clip_official", "longclip"}
|
| 349 |
+
requested = [model for model in args.models if model not in excluded]
|
| 350 |
+
skipped = [model for model in args.models if model in excluded]
|
| 351 |
+
|
| 352 |
+
dataset = ImageFolderPaths(args.dataset)
|
| 353 |
+
results = [evaluate_model(args, dataset, model_key) for model_key in requested]
|
| 354 |
+
ok = [result for result in results if result.get("status") == "ok"]
|
| 355 |
+
failed = [result for result in results if result.get("status") != "ok"]
|
| 356 |
+
summary = {
|
| 357 |
+
"created_at": datetime.now(timezone.utc).isoformat(),
|
| 358 |
+
"dataset": str(dataset.root),
|
| 359 |
+
"num_images": len(dataset),
|
| 360 |
+
"num_classes": len(dataset.classes),
|
| 361 |
+
"classes": dataset.classes,
|
| 362 |
+
"requested_models": args.models,
|
| 363 |
+
"evaluated_models": requested,
|
| 364 |
+
"skipped_models": skipped,
|
| 365 |
+
"num_models": len(results),
|
| 366 |
+
"num_successful": len(ok),
|
| 367 |
+
"num_failed": len(failed),
|
| 368 |
+
"models": {
|
| 369 |
+
result["model_key"]: {
|
| 370 |
+
"status": result.get("status"),
|
| 371 |
+
"accuracy": result.get("accuracy"),
|
| 372 |
+
"correct": result.get("correct"),
|
| 373 |
+
"num_images": result.get("num_images"),
|
| 374 |
+
"per_class_accuracy_mean": result.get("per_class_accuracy_mean"),
|
| 375 |
+
"per_class_accuracy_std": result.get("per_class_accuracy_std"),
|
| 376 |
+
"per_class_accuracy_std_population": result.get("per_class_accuracy_std_population"),
|
| 377 |
+
"num_classes_with_accuracy": result.get("num_classes_with_accuracy"),
|
| 378 |
+
"elapsed_seconds": result.get("elapsed_seconds"),
|
| 379 |
+
"error": result.get("error"),
|
| 380 |
+
}
|
| 381 |
+
for result in results
|
| 382 |
+
},
|
| 383 |
+
"model_results": {result["model_key"]: result for result in results},
|
| 384 |
+
"results": results,
|
| 385 |
+
}
|
| 386 |
+
write_json(Path(args.output), summary)
|
| 387 |
+
print(Path(args.output))
|
| 388 |
+
|
| 389 |
+
|
| 390 |
+
if __name__ == "__main__":
|
| 391 |
+
main()
|
scripts/gradio_demo.py
ADDED
|
@@ -0,0 +1,120 @@
|
|
|
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|
|
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|
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|
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|
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|
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|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
from __future__ import annotations
|
| 2 |
+
|
| 3 |
+
import argparse
|
| 4 |
+
import sys
|
| 5 |
+
from threading import Lock
|
| 6 |
+
from pathlib import Path
|
| 7 |
+
|
| 8 |
+
from PIL import Image
|
| 9 |
+
|
| 10 |
+
sys.path.insert(0, str(Path(__file__).resolve().parents[1]))
|
| 11 |
+
|
| 12 |
+
from cropvlm import CROP_CLASSES, load_cropvlm
|
| 13 |
+
from cropvlm.model import parse_class_names
|
| 14 |
+
|
| 15 |
+
|
| 16 |
+
DEFAULT_CLASSES_TEXT = "\n".join(CROP_CLASSES)
|
| 17 |
+
|
| 18 |
+
|
| 19 |
+
def build_demo(checkpoint: str, device: str | None, prompt_template: str, top_k: int) -> gr.Blocks:
|
| 20 |
+
import gradio as gr
|
| 21 |
+
|
| 22 |
+
classifier = load_cropvlm(
|
| 23 |
+
checkpoint=checkpoint,
|
| 24 |
+
class_names=CROP_CLASSES,
|
| 25 |
+
device=device,
|
| 26 |
+
prompt_template=prompt_template,
|
| 27 |
+
)
|
| 28 |
+
classifier_lock = Lock()
|
| 29 |
+
current_classes = tuple(CROP_CLASSES)
|
| 30 |
+
|
| 31 |
+
def classify(image: Image.Image, classes_text: str, top_k_value: int):
|
| 32 |
+
if image is None:
|
| 33 |
+
return {}, []
|
| 34 |
+
nonlocal current_classes
|
| 35 |
+
requested_classes = tuple(parse_class_names(classes_text))
|
| 36 |
+
if not requested_classes:
|
| 37 |
+
return {}, []
|
| 38 |
+
with classifier_lock:
|
| 39 |
+
if requested_classes != current_classes:
|
| 40 |
+
classifier.set_classes(requested_classes)
|
| 41 |
+
current_classes = requested_classes
|
| 42 |
+
predictions = classifier.predict_with_scores(image, top_k=int(top_k_value))
|
| 43 |
+
|
| 44 |
+
label_scores = {label: probability for label, probability, _ in predictions}
|
| 45 |
+
score_text = "\n".join(
|
| 46 |
+
f"{rank}. {label}: probability={probability:.6f}, cosine={cosine:.6f}"
|
| 47 |
+
for rank, (label, probability, cosine) in enumerate(predictions, start=1)
|
| 48 |
+
)
|
| 49 |
+
return label_scores, score_text
|
| 50 |
+
|
| 51 |
+
examples_dir = Path(__file__).resolve().parents[1] / "examples"
|
| 52 |
+
example_paths = [
|
| 53 |
+
str(examples_dir / name)
|
| 54 |
+
for name in ["cacao.png", "olive.png", "cauliflower.png", "sugarcane.png", "sunflower.png"]
|
| 55 |
+
if (examples_dir / name).exists()
|
| 56 |
+
]
|
| 57 |
+
|
| 58 |
+
with gr.Blocks(title="CropVLM Zero-Shot Demo") as demo:
|
| 59 |
+
gr.Markdown("# CropVLM Zero-Shot Image Classification")
|
| 60 |
+
with gr.Row():
|
| 61 |
+
with gr.Column():
|
| 62 |
+
image = gr.Image(type="pil", label="Image")
|
| 63 |
+
classes = gr.Textbox(
|
| 64 |
+
value=DEFAULT_CLASSES_TEXT,
|
| 65 |
+
lines=12,
|
| 66 |
+
label="Class names",
|
| 67 |
+
)
|
| 68 |
+
top_k_slider = gr.Slider(
|
| 69 |
+
minimum=1,
|
| 70 |
+
maximum=10,
|
| 71 |
+
value=top_k,
|
| 72 |
+
step=1,
|
| 73 |
+
label="Top-k",
|
| 74 |
+
)
|
| 75 |
+
button = gr.Button("Classify", variant="primary")
|
| 76 |
+
with gr.Column():
|
| 77 |
+
label = gr.Label(num_top_classes=top_k, label="Predictions")
|
| 78 |
+
score_text = gr.Textbox(
|
| 79 |
+
label="Scores",
|
| 80 |
+
lines=8,
|
| 81 |
+
interactive=False,
|
| 82 |
+
)
|
| 83 |
+
|
| 84 |
+
outputs = [label, score_text]
|
| 85 |
+
button.click(classify, inputs=[image, classes, top_k_slider], outputs=outputs)
|
| 86 |
+
classes.change(lambda: ({}, ""), outputs=outputs)
|
| 87 |
+
|
| 88 |
+
if example_paths:
|
| 89 |
+
gr.Examples(
|
| 90 |
+
examples=[[path, DEFAULT_CLASSES_TEXT, top_k] for path in example_paths],
|
| 91 |
+
inputs=[image, classes, top_k_slider],
|
| 92 |
+
outputs=outputs,
|
| 93 |
+
fn=classify,
|
| 94 |
+
cache_examples=False,
|
| 95 |
+
)
|
| 96 |
+
|
| 97 |
+
return demo
|
| 98 |
+
|
| 99 |
+
|
| 100 |
+
def main():
|
| 101 |
+
parser = argparse.ArgumentParser()
|
| 102 |
+
parser.add_argument("--checkpoint", default="models/CropCLIP_FullDataset_Acc_0.75.pth")
|
| 103 |
+
parser.add_argument("--device", default=None)
|
| 104 |
+
parser.add_argument("--prompt-template", default="{}")
|
| 105 |
+
parser.add_argument("--top-k", type=int, default=5)
|
| 106 |
+
parser.add_argument("--server-name", default="127.0.0.1")
|
| 107 |
+
parser.add_argument("--server-port", type=int, default=7860)
|
| 108 |
+
args = parser.parse_args()
|
| 109 |
+
|
| 110 |
+
demo = build_demo(
|
| 111 |
+
checkpoint=args.checkpoint,
|
| 112 |
+
device=args.device,
|
| 113 |
+
prompt_template=args.prompt_template,
|
| 114 |
+
top_k=args.top_k,
|
| 115 |
+
)
|
| 116 |
+
demo.launch(server_name=args.server_name, server_port=args.server_port)
|
| 117 |
+
|
| 118 |
+
|
| 119 |
+
if __name__ == "__main__":
|
| 120 |
+
main()
|