Improve model card metadata and documentation (#1)
Browse files- Improve model card metadata and documentation (7d8f894080b02c35595cdf5a28b8ae1d1039c2be)
Co-authored-by: Niels Rogge <nielsr@users.noreply.huggingface.co>
README.md
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---
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library_name: tedbench
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tags:
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- protein
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- structure
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- fold-classification
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- tedbench
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pipeline_tag: other
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license: bsd-3-clause
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---
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# TEDBench — Supervised from scratch (structure only)
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**Variant:** `miae_l` | **Parameters:** 339M | **Layers:** 24 | **Hidden dim:** 1024 | **Attn heads:** 16
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This **MiAEClassifier** was trained from scratch on TEDBench without pretraining.
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protein fold classification (ICML 2026). MiAE is an SE(3)-invariant masked
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autoencoder that masks up to 90% of backbone frames and reconstructs the full
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structure with a lightweight decoder.
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## Architecture sizes
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model.eval()
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```
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## Citation
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```bibtex
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booktitle={Proceedings of the 43rd International Conference on Machine Learning},
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year={2026}
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}
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```
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---
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library_name: tedbench
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license: bsd-3-clause
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pipeline_tag: graph-ml
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tags:
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- protein
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- structure
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- fold-classification
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- tedbench
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---
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# TEDBench — Supervised from scratch (structure only)
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**Variant:** `miae_l` | **Parameters:** 339M | **Layers:** 24 | **Hidden dim:** 1024 | **Attn heads:** 16
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This **MiAEClassifier** was trained from scratch on TEDBench without pretraining. It is part of the research presented in the paper [Protein Fold Classification at Scale: Benchmarking and Pretraining](https://arxiv.org/abs/2605.18552).
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MiAE is an SE(3)-invariant masked autoencoder that masks up to 90% of backbone frames and reconstructs the full structure with a lightweight decoder. It establishes a strong recipe for protein fold classification on the [TEDBench](https://github.com/BorgwardtLab/TEDBench) benchmark.
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## Architecture sizes
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model.eval()
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```
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## Links
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- **Code:** [BorgwardtLab/TEDBench](https://github.com/BorgwardtLab/TEDBench)
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- **Paper:** [arXiv:2605.18552](https://arxiv.org/abs/2605.18552)
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## Citation
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```bibtex
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booktitle={Proceedings of the 43rd International Conference on Machine Learning},
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year={2026}
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}
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```
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