dexiongc nielsr HF Staff commited on
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Improve model card with metadata and links (#1)

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- Improve model card with metadata and links (49406ed39523973245b37874ab5425f57cab7586)


Co-authored-by: Niels Rogge <nielsr@users.noreply.huggingface.co>

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  1. README.md +10 -13
README.md CHANGED
@@ -1,26 +1,23 @@
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  ---
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  library_name: tedbench
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- tags:
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- - protein
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- - structure
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- - fold-classification
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- - tedbench
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- pipeline_tag: other
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  license: bsd-3-clause
 
 
 
 
 
 
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  ---
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  # TEDBench — Supervised from scratch (structure + sequence)
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  **Variant:** `miae_b` + seq &nbsp;|&nbsp; **Parameters:** 102M &nbsp;|&nbsp; **Layers:** 12 &nbsp;|&nbsp; **Hidden dim:** 768 &nbsp;|&nbsp; **Attn heads:** 12
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- This **MiAEClassifier** was trained from scratch on TEDBench without pretraining.
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  > **+seq variant** — sequence embeddings are concatenated to the geometric encoder input (`model.use_seq_input=true`).
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- Part of the [TEDBench](https://github.com/BorgwardtLab/TEDBench) benchmark for
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- protein fold classification (ICML 2026). MiAE is an SE(3)-invariant masked
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- autoencoder that masks up to 90% of backbone frames and reconstructs the full
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- structure with a lightweight decoder.
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  ## Architecture sizes
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@@ -57,8 +54,8 @@ model.eval()
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  ```bibtex
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  @inproceedings{chen2026tedbench,
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  title={Protein Fold Classification at Scale: Benchmarking and Pretraining},
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- author={Chen, Dexiong and Manolache, Andrei and Niepert, Mathias and Borgwardt, Karsten},
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  booktitle={Proceedings of the 43rd International Conference on Machine Learning},
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  year={2026}
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  }
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- ```
 
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  ---
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  library_name: tedbench
 
 
 
 
 
 
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  license: bsd-3-clause
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+ pipeline_tag: graph-ml
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+ tags:
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+ - protein
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+ - structure
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+ - fold-classification
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+ - tedbench
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  ---
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  # TEDBench — Supervised from scratch (structure + sequence)
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  **Variant:** `miae_b` + seq &nbsp;|&nbsp; **Parameters:** 102M &nbsp;|&nbsp; **Layers:** 12 &nbsp;|&nbsp; **Hidden dim:** 768 &nbsp;|&nbsp; **Attn heads:** 12
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+ This **MiAEClassifier** was trained from scratch on TEDBench without pretraining. This model is part of the work presented in the paper [Protein Fold Classification at Scale: Benchmarking and Pretraining](https://arxiv.org/abs/2605.18552).
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  > **+seq variant** — sequence embeddings are concatenated to the geometric encoder input (`model.use_seq_input=true`).
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+ Part of the [TEDBench](https://github.com/BorgwardtLab/TEDBench) benchmark for protein fold classification (ICML 2026). MiAE is an SE(3)-invariant masked autoencoder that masks up to 90% of backbone frames and reconstructs the full structure with a lightweight decoder.
 
 
 
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  ## Architecture sizes
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  ```bibtex
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  @inproceedings{chen2026tedbench,
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  title={Protein Fold Classification at Scale: Benchmarking and Pretraining},
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+ author={Chen, Dexiong state, Andrei Manolache, Mathias Niepert, Karsten Borgwardt},
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  booktitle={Proceedings of the 43rd International Conference on Machine Learning},
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  year={2026}
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  }
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+ ```