dexiongc nielsr HF Staff commited on
Commit
3e5c358
·
1 Parent(s): ed1e1a3

Update pipeline tag and add paper/code links (#1)

Browse files

- Update pipeline tag and add paper/code links (8abb73f99cd2a0cd797f7cd07c5bd5df02a2b79d)


Co-authored-by: Niels Rogge <nielsr@users.noreply.huggingface.co>

Files changed (1) hide show
  1. README.md +11 -9
README.md CHANGED
@@ -1,25 +1,27 @@
1
  ---
2
  library_name: tedbench
3
- tags:
4
- - protein
5
- - structure
6
- - fold-classification
7
- - tedbench
8
- pipeline_tag: other
9
  license: bsd-3-clause
 
 
 
 
 
 
10
  ---
11
 
12
  # TEDBench — Fine-tuned from pretrained MiAE (structure only)
13
 
14
  **Variant:** `miae_b` &nbsp;|&nbsp; **Parameters:** 102M &nbsp;|&nbsp; **Layers:** 12 &nbsp;|&nbsp; **Hidden dim:** 768 &nbsp;|&nbsp; **Attn heads:** 12
15
 
16
- This **MiAEClassifier** was initialised from a pretrained MiAE and fine-tuned on TEDBench for fold classification.
17
 
18
  Part of the [TEDBench](https://github.com/BorgwardtLab/TEDBench) benchmark for
19
  protein fold classification (ICML 2026). MiAE is an SE(3)-invariant masked
20
  autoencoder that masks up to 90% of backbone frames and reconstructs the full
21
  structure with a lightweight decoder.
22
 
 
 
23
  ## Architecture sizes
24
 
25
  | Variant | Params | Layers | Hidden dim | Attn heads |
@@ -55,8 +57,8 @@ model.eval()
55
  ```bibtex
56
  @inproceedings{chen2026tedbench,
57
  title={Protein Fold Classification at Scale: Benchmarking and Pretraining},
58
- author={Chen, Dexiong and Manolache, Andrei and Niepert, Mathias and Borgwardt, Karsten},
59
  booktitle={Proceedings of the 43rd International Conference on Machine Learning},
60
  year={2026}
61
  }
62
- ```
 
1
  ---
2
  library_name: tedbench
 
 
 
 
 
 
3
  license: bsd-3-clause
4
+ pipeline_tag: graph-ml
5
+ tags:
6
+ - protein
7
+ - structure
8
+ - fold-classification
9
+ - tedbench
10
  ---
11
 
12
  # TEDBench — Fine-tuned from pretrained MiAE (structure only)
13
 
14
  **Variant:** `miae_b` &nbsp;|&nbsp; **Parameters:** 102M &nbsp;|&nbsp; **Layers:** 12 &nbsp;|&nbsp; **Hidden dim:** 768 &nbsp;|&nbsp; **Attn heads:** 12
15
 
16
+ This **MiAEClassifier** was initialised from a pretrained MiAE and fine-tuned on TEDBench for fold classification. This model was presented in the paper [Protein Fold Classification at Scale: Benchmarking and Pretraining](https://huggingface.co/papers/2605.18552).
17
 
18
  Part of the [TEDBench](https://github.com/BorgwardtLab/TEDBench) benchmark for
19
  protein fold classification (ICML 2026). MiAE is an SE(3)-invariant masked
20
  autoencoder that masks up to 90% of backbone frames and reconstructs the full
21
  structure with a lightweight decoder.
22
 
23
+ Official Code: [https://github.com/BorgwardtLab/TEDBench](https://github.com/BorgwardtLab/TEDBench)
24
+
25
  ## Architecture sizes
26
 
27
  | Variant | Params | Layers | Hidden dim | Attn heads |
 
57
  ```bibtex
58
  @inproceedings{chen2026tedbench,
59
  title={Protein Fold Classification at Scale: Benchmarking and Pretraining},
60
+ author={Chen, Dexiong house, Andrei Manolache, Mathias Niepert, Karsten Borgwardt},
61
  booktitle={Proceedings of the 43rd International Conference on Machine Learning},
62
  year={2026}
63
  }
64
+ ```