| { |
| "validate#dataset#cache_rate": 0, |
| "validate#postprocessing": { |
| "_target_": "Compose", |
| "transforms": [ |
| { |
| "_target_": "Activationsd", |
| "keys": "pred", |
| "softmax": true |
| }, |
| { |
| "_target_": "AsDiscreted", |
| "keys": [ |
| "pred", |
| "label" |
| ], |
| "argmax": [ |
| true, |
| false |
| ], |
| "to_onehot": 4 |
| }, |
| { |
| "_target_": "ToTensord", |
| "keys": [ |
| "pred", |
| "label" |
| ], |
| "device": "@device" |
| }, |
| { |
| "_target_": "SaveImaged", |
| "_disabled_": true, |
| "keys": "pred", |
| "meta_keys": "pred_meta_dict", |
| "output_dir": "@output_dir", |
| "output_ext": ".json" |
| } |
| ] |
| }, |
| "validate#handlers": [ |
| { |
| "_target_": "CheckpointLoader", |
| "load_path": "$@ckpt_dir + '/model.pt'", |
| "load_dict": { |
| "model": "@network" |
| } |
| }, |
| { |
| "_target_": "StatsHandler", |
| "iteration_log": false |
| }, |
| { |
| "_target_": "MetricsSaver", |
| "save_dir": "@output_dir", |
| "metrics": [ |
| "val_f1", |
| "val_accuracy" |
| ], |
| "metric_details": [ |
| "val_f1" |
| ], |
| "batch_transform": "$monai.handlers.from_engine(['image_meta_dict'])", |
| "summary_ops": "*" |
| } |
| ], |
| "initialize": [ |
| "$import sys", |
| "$sys.path.append(@bundle_root)", |
| "$monai.utils.set_determinism(seed=123)", |
| "$import scripts", |
| "$monai.data.register_writer('json', scripts.ClassificationWriter)" |
| ], |
| "run": [ |
| "$@validate#evaluator.run()" |
| ] |
| } |
|
|
