.gitignore

# Byte-compiled / optimized / DLL files
__pycache__/
*.py[cod]
*$py.class

# C extensions
*.so

# Distribution / packaging
.Python
build/
develop-eggs/
dist/
downloads/
eggs/
.eggs/
lib/
lib64/
parts/
sdist/
var/
wheels/
*.egg-info/
.installed.cfg
*.egg
MANIFEST

# PyInstaller
#  Usually these files are written by a python script from a template
#  before PyInstaller builds the exe, so as to inject date/other infos into it.
*.manifest
*.spec

# Installer logs
pip-log.txt
pip-delete-this-directory.txt

# Unit test / coverage reports
htmlcov/
.tox/
.coverage
.coverage.*
.coverage/
.cache
nosetests.xml
coverage.xml
*.cover
.hypothesis/
.pytest_cache/

# temporary unittest artifacts
tests/testing_data/temp_*

# Translations
*.mo
*.pot

# Django stuff:
*.log
local_settings.py
db.sqlite3

# Flask stuff:
instance/
.webassets-cache

# Scrapy stuff:
.scrapy

# Sphinx documentation
docs/build/
docs/source/_gen
docs/source/*_properties.csv
_build/

# PyBuilder
target/

# Jupyter Notebook
.ipynb_checkpoints

# pyenv
.python-version

# celery beat schedule file
celerybeat-schedule

# SageMath parsed files
*.sage.py

# Environments
.env
.venv
env/
venv/
ENV/
env.bak/
venv.bak/

# Spyder project settings
.spyderproject
.spyproject

# Rope project settings
.ropeproject

# mkdocs documentation
/site

# pytype cache
.pytype/

# mypy
.mypy_cache/
examples/scd_lvsegs.npz
temp/
.idea/
.dmypy.json

*~

# Remove .pyre temporary config files
.pyre
.pyre_configuration

# temporary editor files that should not be in git
*.orig
*.bak
*.swp
.DS_Store

# temporary testing data MedNIST
tests/testing_data/MedNIST*
tests/testing_data/*Hippocampus*
tests/testing_data/*.tiff
tests/testing_data/schema.json
tests/testing_data/endo.mp4
tests/testing_data/ultrasound.avi
tests/testing_data/train_data_stats.yaml
tests/testing_data/eval_data_stats.yaml
tests/testing_data/train_data_stats_by_case.yaml
tests/testing_data/eval_data_stats_by_case.yaml
tests/testing_data/CT_2D_head_fixed.mha
tests/testing_data/CT_2D_head_moving.mha
tests/testing_data/config_executed.json
tests/testing_data/eval
tests/testing_data/nrrd_example.nrrd

# clang format tool
.clang-format-bin/

# VSCode
.vscode/
*.zip

# profiling results
*.prof
runs

*.gz

*.pth

*zarr/*