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Add nvidia-llama-nemotron-rerank-1b-v2-E2-S4-Mmulti_neg_pairwise-Linfonce-FullData

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Upload fine-tuned rerankers for BioASQ 14B

Co-authored-by: André Ribeiro <andrepedro2004@hotmail.com>
Co-authored-by: Rúben Garrido <rubengarrido@ua.pt>

.gitattributes CHANGED
@@ -35,3 +35,4 @@ saved_model/**/* filter=lfs diff=lfs merge=lfs -text
35
  *tfevents* filter=lfs diff=lfs merge=lfs -text
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  BAAI-bge-reranker-base-E2-S1-Mpairwise-FullDataTrue/tokenizer.json filter=lfs diff=lfs merge=lfs -text
37
  BAAI-bge-reranker-v2-m3-E2-S1-Mpairwise-FullDataTrue/tokenizer.json filter=lfs diff=lfs merge=lfs -text
 
 
35
  *tfevents* filter=lfs diff=lfs merge=lfs -text
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  BAAI-bge-reranker-base-E2-S1-Mpairwise-FullDataTrue/tokenizer.json filter=lfs diff=lfs merge=lfs -text
37
  BAAI-bge-reranker-v2-m3-E2-S1-Mpairwise-FullDataTrue/tokenizer.json filter=lfs diff=lfs merge=lfs -text
38
+ nvidia-llama-nemotron-rerank-1b-v2-E2-S4-Mmulti_neg_pairwise-Linfonce-FullData/tokenizer.json filter=lfs diff=lfs merge=lfs -text
nvidia-llama-nemotron-rerank-1b-v2-E2-S4-Mmulti_neg_pairwise-Linfonce-FullData/config.json ADDED
@@ -0,0 +1,48 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ {
2
+ "architectures": [
3
+ "LlamaBidirectionalForSequenceClassification"
4
+ ],
5
+ "attention_bias": false,
6
+ "attention_dropout": 0.0,
7
+ "auto_map": {
8
+ "AutoConfig": "llama_bidirectional_model.LlamaBidirectionalConfig",
9
+ "AutoModelForSequenceClassification": "llama_bidirectional_model.LlamaBidirectionalForSequenceClassification"
10
+ },
11
+ "bos_token_id": 128000,
12
+ "dtype": "bfloat16",
13
+ "eos_token_id": 128001,
14
+ "head_dim": 64,
15
+ "hidden_act": "silu",
16
+ "hidden_size": 2048,
17
+ "id2label": {
18
+ "0": "LABEL_0"
19
+ },
20
+ "initializer_range": 0.02,
21
+ "intermediate_size": 8192,
22
+ "label2id": {
23
+ "LABEL_0": 0
24
+ },
25
+ "max_position_embeddings": 131072,
26
+ "mlp_bias": false,
27
+ "model_type": "llama_bidirec",
28
+ "num_attention_heads": 32,
29
+ "num_hidden_layers": 16,
30
+ "num_key_value_heads": 8,
31
+ "pad_token_id": 128001,
32
+ "pooling": "avg",
33
+ "pretraining_tp": 1,
34
+ "rms_norm_eps": 1e-05,
35
+ "rope_parameters": {
36
+ "factor": 32.0,
37
+ "high_freq_factor": 4.0,
38
+ "low_freq_factor": 1.0,
39
+ "original_max_position_embeddings": 8192,
40
+ "rope_theta": 500000.0,
41
+ "rope_type": "llama3"
42
+ },
43
+ "temperature": 1.0,
44
+ "tie_word_embeddings": true,
45
+ "transformers_version": "5.2.0",
46
+ "use_cache": false,
47
+ "vocab_size": 128256
48
+ }
nvidia-llama-nemotron-rerank-1b-v2-E2-S4-Mmulti_neg_pairwise-Linfonce-FullData/llama_bidirectional_model.py ADDED
@@ -0,0 +1,362 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ # SPDX-FileCopyrightText: Copyright (c) 2026 NVIDIA CORPORATION & AFFILIATES. All rights reserved.
2
+ # SPDX-License-Identifier: Apache-2.0.
3
+ """
4
+ Bidirectional Llama model for cross-encoder reranking.
5
+
6
+ Modifies LlamaModel to use bidirectional (non-causal) attention so each token
7
+ attends to all others — required for cross-encoder scoring of query-document pairs.
8
+
9
+ Provides three classes:
10
+ - LlamaBidirectionalConfig: Adds pooling and temperature to LlamaConfig.
11
+ - LlamaBidirectionalModel: LlamaModel with causal masking replaced by
12
+ bidirectional masking. Overrides forward() to support transformers >=4.44.
13
+ - LlamaBidirectionalForSequenceClassification: Pools hidden states and
14
+ projects to a relevance score via a linear head.
15
+
16
+ Transformers version compatibility (>=4.44 including 5.0+):
17
+ The forward() implementation handles these API changes at import time via
18
+ inspect.signature() on LlamaDecoderLayer and DynamicCache:
19
+
20
+ < 4.53: _update_causal_mask exists on LlamaModel (not used here).
21
+ 4.53+: Masking moved to masking_utils; requires full forward() override.
22
+ < 4.54: Decoder layer returns a tuple.
23
+ 4.54+: Decoder layer returns a tensor.
24
+ < 4.56: Cache kwarg is ``past_key_value`` (singular).
25
+ 4.56+: Cache kwarg is ``past_key_values`` (plural); DynamicCache accepts config.
26
+ 5.0+: Native ``create_bidirectional_mask`` in masking_utils.
27
+ """
28
+
29
+ import inspect
30
+ from typing import Optional, Union, Tuple, List
31
+
32
+ import torch
33
+ import torch.nn as nn
34
+ from torch.nn import BCEWithLogitsLoss, CrossEntropyLoss, MSELoss
35
+ from transformers.modeling_outputs import SequenceClassifierOutputWithPast
36
+ from transformers.cache_utils import Cache, DynamicCache
37
+ from transformers.modeling_outputs import BaseModelOutputWithPast
38
+ from transformers.models.llama.configuration_llama import LlamaConfig
39
+ from transformers.models.llama.modeling_llama import (
40
+ LlamaDecoderLayer,
41
+ LlamaModel,
42
+ LlamaPreTrainedModel,
43
+ )
44
+ from transformers.utils import logging
45
+
46
+ logger = logging.get_logger(__name__)
47
+
48
+ # Check if native create_bidirectional_mask exists (transformers >= 5.0)
49
+ try:
50
+ from transformers.masking_utils import create_bidirectional_mask
51
+
52
+ _HAS_NATIVE_BIDIRECTIONAL_MASK = True
53
+ except ImportError:
54
+ from transformers.modeling_attn_mask_utils import _prepare_4d_attention_mask
55
+
56
+ _HAS_NATIVE_BIDIRECTIONAL_MASK = False
57
+
58
+ # Detect API differences via introspection
59
+ _decoder_forward_params = inspect.signature(LlamaDecoderLayer.forward).parameters
60
+ _dynamic_cache_init_params = inspect.signature(DynamicCache.__init__).parameters
61
+
62
+ # past_key_value (singular) in < 4.56, past_key_values (plural) in >= 4.56
63
+ _USE_PLURAL_CACHE_PARAM = "past_key_values" in _decoder_forward_params
64
+ # DynamicCache accepts config parameter in >= 4.56
65
+ _DYNAMIC_CACHE_ACCEPTS_CONFIG = "config" in _dynamic_cache_init_params
66
+
67
+
68
+ class LlamaBidirectionalConfig(LlamaConfig):
69
+ """Configuration for LlamaBidirectionalModel with pooling and temperature settings."""
70
+
71
+ model_type = "llama_bidirec"
72
+
73
+ def __init__(
74
+ self, pooling: str = "avg", temperature: float = 1.0, **kwargs
75
+ ) -> None:
76
+ """
77
+ Initialize bidirectional Llama configuration.
78
+
79
+ Args:
80
+ pooling: Pooling strategy for embeddings ("avg", "cls", "last", etc.)
81
+ temperature: Temperature scaling for embeddings
82
+ **kwargs: Additional arguments passed to LlamaConfig
83
+ """
84
+ self.pooling = pooling
85
+ self.temperature = temperature
86
+ super().__init__(**kwargs)
87
+
88
+
89
+ class LlamaBidirectionalModel(LlamaModel):
90
+ """
91
+ LlamaModel modified to use bidirectional (non-causal) attention.
92
+
93
+ In standard Llama, each token can only attend to previous tokens (causal attention).
94
+ This model removes that restriction, allowing each token to attend to all tokens
95
+ in the sequence, which is useful for embedding tasks.
96
+
97
+ The key modifications are:
98
+ 1. Setting is_causal=False on all attention layers
99
+ 2. Using a bidirectional attention mask instead of causal mask
100
+ """
101
+
102
+ config_class = LlamaBidirectionalConfig
103
+
104
+ def __init__(self, config: LlamaConfig) -> None:
105
+ super().__init__(config)
106
+ for layer in self.layers:
107
+ layer.self_attn.is_causal = False
108
+
109
+ def _create_bidirectional_mask(
110
+ self,
111
+ input_embeds: torch.Tensor,
112
+ attention_mask: torch.Tensor | None,
113
+ ) -> torch.Tensor | None:
114
+ """
115
+ Create bidirectional attention mask.
116
+
117
+ Args:
118
+ input_embeds: Input embeddings tensor of shape (batch_size, seq_len, hidden_size)
119
+ attention_mask: Optional 2D attention mask of shape (batch_size, seq_len)
120
+ where 1 indicates tokens to attend to and 0 indicates masked tokens
121
+
122
+ Returns:
123
+ 4D attention mask suitable for the attention implementation, or None
124
+ if no masking is needed
125
+ """
126
+ if attention_mask is None:
127
+ return None
128
+
129
+ if _HAS_NATIVE_BIDIRECTIONAL_MASK:
130
+ return create_bidirectional_mask(
131
+ config=self.config,
132
+ input_embeds=input_embeds,
133
+ attention_mask=attention_mask,
134
+ )
135
+
136
+ # Fallback for transformers < 5.0 without create_bidirectional_mask
137
+
138
+ # Flash attention handles 2D masks internally; only pass mask if there
139
+ # are actually masked tokens (zeros), otherwise return None for efficiency
140
+ if getattr(self.config, "_attn_implementation", None) == "flash_attention_2":
141
+ has_masked_tokens = (attention_mask == 0).any()
142
+ return attention_mask if has_masked_tokens else None
143
+
144
+ return _prepare_4d_attention_mask(attention_mask, input_embeds.dtype)
145
+
146
+ def forward(
147
+ self,
148
+ input_ids: torch.LongTensor | None = None,
149
+ attention_mask: torch.Tensor | None = None,
150
+ position_ids: torch.LongTensor | None = None,
151
+ past_key_values: Cache | None = None,
152
+ inputs_embeds: torch.FloatTensor | None = None,
153
+ cache_position: torch.LongTensor | None = None,
154
+ use_cache: bool | None = None,
155
+ **kwargs,
156
+ ) -> BaseModelOutputWithPast:
157
+ """
158
+ Forward pass with bidirectional attention.
159
+
160
+ Args:
161
+ input_ids: Input token IDs of shape (batch_size, seq_len)
162
+ attention_mask: Attention mask of shape (batch_size, seq_len)
163
+ position_ids: Position IDs for rotary embeddings
164
+ past_key_values: Cached key/value states for incremental decoding
165
+ inputs_embeds: Pre-computed input embeddings (alternative to input_ids)
166
+ cache_position: Position indices for cache updates
167
+ use_cache: Whether to return cached key/value states
168
+ **kwargs: Additional arguments passed to decoder layers
169
+
170
+ Returns:
171
+ BaseModelOutputWithPast containing last_hidden_state and past_key_values
172
+ """
173
+ if (input_ids is None) ^ (inputs_embeds is not None):
174
+ raise ValueError(
175
+ "You must specify exactly one of input_ids or inputs_embeds"
176
+ )
177
+
178
+ if inputs_embeds is None:
179
+ inputs_embeds = self.embed_tokens(input_ids)
180
+
181
+ # Initialize cache if needed
182
+ if use_cache and past_key_values is None:
183
+ if _DYNAMIC_CACHE_ACCEPTS_CONFIG:
184
+ past_key_values = DynamicCache(config=self.config)
185
+ else:
186
+ past_key_values = DynamicCache()
187
+
188
+ if cache_position is None:
189
+ past_seen_tokens = (
190
+ past_key_values.get_seq_length() if past_key_values is not None else 0
191
+ )
192
+ cache_position = torch.arange(
193
+ past_seen_tokens,
194
+ past_seen_tokens + inputs_embeds.shape[1],
195
+ device=inputs_embeds.device,
196
+ )
197
+
198
+ if position_ids is None:
199
+ position_ids = cache_position.unsqueeze(0)
200
+
201
+ bidirectional_mask = self._create_bidirectional_mask(
202
+ inputs_embeds, attention_mask
203
+ )
204
+
205
+ hidden_states = inputs_embeds
206
+ position_embeddings = self.rotary_emb(hidden_states, position_ids)
207
+
208
+ # Build decoder layer kwargs with correct cache parameter name
209
+ # (past_key_value in < 4.56, past_key_values in >= 4.56)
210
+ layer_kwargs = {
211
+ "attention_mask": bidirectional_mask,
212
+ "position_ids": position_ids,
213
+ "use_cache": use_cache,
214
+ "cache_position": cache_position,
215
+ "position_embeddings": position_embeddings,
216
+ }
217
+ if _USE_PLURAL_CACHE_PARAM:
218
+ layer_kwargs["past_key_values"] = past_key_values
219
+ else:
220
+ layer_kwargs["past_key_value"] = past_key_values
221
+
222
+ for decoder_layer in self.layers[: self.config.num_hidden_layers]:
223
+ layer_outputs = decoder_layer(hidden_states, **layer_kwargs)
224
+
225
+ # Decoder returns tuple in < 4.54, tensor in >= 4.54
226
+ if isinstance(layer_outputs, tuple):
227
+ hidden_states = layer_outputs[0]
228
+ else:
229
+ hidden_states = layer_outputs
230
+
231
+ hidden_states = self.norm(hidden_states)
232
+
233
+ return BaseModelOutputWithPast(
234
+ last_hidden_state=hidden_states,
235
+ past_key_values=past_key_values,
236
+ )
237
+
238
+
239
+ def pool(
240
+ last_hidden_states: torch.Tensor, attention_mask: torch.Tensor, pool_type: str
241
+ ) -> torch.Tensor:
242
+ last_hidden = last_hidden_states.masked_fill(~attention_mask[..., None].bool(), 0.0)
243
+
244
+ if pool_type == "avg":
245
+ emb = last_hidden.sum(dim=1) / attention_mask.sum(dim=1)[..., None]
246
+ elif pool_type == "weighted_avg":
247
+ emb = last_hidden.sum(dim=1)
248
+ elif pool_type == "cls":
249
+ emb = last_hidden[:, 0]
250
+ elif pool_type == "last":
251
+ left_padding = attention_mask[:, -1].sum() == attention_mask.shape[0]
252
+ if left_padding:
253
+ emb = last_hidden[:, -1]
254
+ else:
255
+ sequence_lengths = attention_mask.sum(dim=1) - 1
256
+ batch_size = last_hidden.shape[0]
257
+ emb = last_hidden[
258
+ torch.arange(batch_size, device=last_hidden.device), sequence_lengths
259
+ ]
260
+ else:
261
+ raise ValueError(f"pool_type {pool_type} not supported")
262
+
263
+ return emb
264
+
265
+
266
+ class LlamaBidirectionalForSequenceClassification(LlamaPreTrainedModel):
267
+ config_class = LlamaBidirectionalConfig
268
+
269
+ def __init__(self, config):
270
+ super().__init__(config)
271
+ self.num_labels = config.num_labels
272
+ self.score = nn.Linear(config.hidden_size, self.num_labels, bias=False)
273
+ self.model = LlamaBidirectionalModel(config)
274
+
275
+ # Initialize weights and apply final processing
276
+ self.post_init()
277
+
278
+ def forward(
279
+ self,
280
+ input_ids: Optional[torch.LongTensor] = None,
281
+ attention_mask: Optional[torch.Tensor] = None,
282
+ position_ids: Optional[torch.LongTensor] = None,
283
+ past_key_values: Optional[Union[Cache, List[torch.FloatTensor]]] = None,
284
+ inputs_embeds: Optional[torch.FloatTensor] = None,
285
+ labels: Optional[torch.LongTensor] = None,
286
+ use_cache: Optional[bool] = None,
287
+ output_attentions: Optional[bool] = None,
288
+ output_hidden_states: Optional[bool] = None,
289
+ return_dict: Optional[bool] = None,
290
+ **kwargs,
291
+ ) -> Union[Tuple, SequenceClassifierOutputWithPast]:
292
+ r"""
293
+ labels (`torch.LongTensor` of shape `(batch_size,)`, *optional*):
294
+ Labels for computing the sequence classification/regression loss. Indices should be in `[0, ...,
295
+ config.num_labels - 1]`. If `config.num_labels == 1` a regression loss is computed (Mean-Square loss), If
296
+ `config.num_labels > 1` a classification loss is computed (Cross-Entropy).
297
+ """
298
+ return_dict = (
299
+ return_dict if return_dict is not None else self.config.use_return_dict
300
+ )
301
+
302
+ transformer_outputs = self.model(
303
+ input_ids,
304
+ attention_mask=attention_mask,
305
+ position_ids=position_ids,
306
+ past_key_values=past_key_values,
307
+ inputs_embeds=inputs_embeds,
308
+ use_cache=use_cache,
309
+ output_attentions=output_attentions,
310
+ output_hidden_states=output_hidden_states,
311
+ return_dict=return_dict,
312
+ **kwargs,
313
+ )
314
+ hidden_states = transformer_outputs[0]
315
+
316
+ pooled_hidden_states = pool(
317
+ last_hidden_states=hidden_states,
318
+ attention_mask=attention_mask,
319
+ pool_type=self.config.pooling,
320
+ )
321
+
322
+ pooled_logits = self.score(pooled_hidden_states)
323
+ pooled_logits = pooled_logits / self.config.temperature
324
+
325
+ loss = None
326
+ if labels is not None:
327
+ labels = labels.to(pooled_logits.device)
328
+ if self.config.problem_type is None:
329
+ if self.num_labels == 1:
330
+ self.config.problem_type = "regression"
331
+ elif self.num_labels > 1 and (
332
+ labels.dtype == torch.long or labels.dtype == torch.int
333
+ ):
334
+ self.config.problem_type = "single_label_classification"
335
+ else:
336
+ self.config.problem_type = "multi_label_classification"
337
+
338
+ if self.config.problem_type == "regression":
339
+ loss_fct = MSELoss()
340
+ if self.num_labels == 1:
341
+ loss = loss_fct(pooled_logits.squeeze(), labels.squeeze())
342
+ else:
343
+ loss = loss_fct(pooled_logits, labels)
344
+ elif self.config.problem_type == "single_label_classification":
345
+ loss_fct = CrossEntropyLoss()
346
+ loss = loss_fct(
347
+ pooled_logits.view(-1, self.num_labels), labels.view(-1)
348
+ )
349
+ elif self.config.problem_type == "multi_label_classification":
350
+ loss_fct = BCEWithLogitsLoss()
351
+ loss = loss_fct(pooled_logits, labels)
352
+ if not return_dict:
353
+ output = (pooled_logits,) + transformer_outputs[1:]
354
+ return ((loss,) + output) if loss is not None else output
355
+
356
+ return SequenceClassifierOutputWithPast(
357
+ loss=loss,
358
+ logits=pooled_logits,
359
+ past_key_values=transformer_outputs.past_key_values,
360
+ hidden_states=transformer_outputs.hidden_states,
361
+ attentions=transformer_outputs.attentions,
362
+ )
nvidia-llama-nemotron-rerank-1b-v2-E2-S4-Mmulti_neg_pairwise-Linfonce-FullData/model.safetensors ADDED
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nvidia-llama-nemotron-rerank-1b-v2-E2-S4-Mmulti_neg_pairwise-Linfonce-FullData/ranx_results.json ADDED
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1
+ {
2
+ "model": "nvidia-llama-nemotron-rerank-1b-v2",
3
+ "val_files": [
4
+ "../../data/val_data/13B3_golden.json",
5
+ "../../data/val_data/13B1_golden.json",
6
+ "../../data/val_data/13B2_golden.json",
7
+ "../../data/val_data/13B4_golden.json"
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+ ],
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+ "total": {
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+ "ndcg@5": 0.9996141027131991,
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+ "mrr": 1.0,
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+ "recall@10": 0.5881809405568562,
13
+ "recall@100": 0.9990907464893759,
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+ "map@10": 0.5879983675276444,
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+ "map-bioasq@10": 0.9994906295851674
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+ },
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+ "13B3_golden.json": {
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+ "ndcg@5": 1.0,
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+ "mrr": 1.0,
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+ "recall@10": 0.6106086949554449,
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+ "recall@100": 0.9996573386636207,
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+ "map@10": 0.6106086949554449,
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+ "map-bioasq@10": 1.0
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+ },
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+ "13B1_golden.json": {
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+ "ndcg@5": 0.998456410852796,
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+ "mrr": 1.0,
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+ "recall@10": 0.7087873938986045,
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+ "recall@100": 1.0,
30
+ "map@10": 0.7080571017817577,
31
+ "map-bioasq@10": 0.9979625183406695
32
+ },
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+ "13B2_golden.json": {
34
+ "ndcg@5": 1.0,
35
+ "mrr": 1.0,
36
+ "recall@10": 0.6088870534178833,
37
+ "recall@100": 0.9996638655462186,
38
+ "map@10": 0.6088870534178833,
39
+ "map-bioasq@10": 1.0
40
+ },
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