Add microsoft-BiomedNLP-PubMedBERT-base-uncased-abstract-fulltext-E2-S1-Mpairwise-FullDataTrue--BasicV2
Browse filesUpload fine-tuned rerankers for BioASQ 14B
Co-authored-by: André Ribeiro <andrepedro2004@hotmail.com>
Co-authored-by: Rúben Garrido <rubengarrido@ua.pt>
- microsoft-BiomedNLP-PubMedBERT-base-uncased-abstract-fulltext-E2-S1-Mpairwise-FullDataTrue--BasicV2/config.json +34 -0
- microsoft-BiomedNLP-PubMedBERT-base-uncased-abstract-fulltext-E2-S1-Mpairwise-FullDataTrue--BasicV2/model.safetensors +3 -0
- microsoft-BiomedNLP-PubMedBERT-base-uncased-abstract-fulltext-E2-S1-Mpairwise-FullDataTrue--BasicV2/ranx_results.json +49 -0
- microsoft-BiomedNLP-PubMedBERT-base-uncased-abstract-fulltext-E2-S1-Mpairwise-FullDataTrue--BasicV2/tokenizer.json +0 -0
- microsoft-BiomedNLP-PubMedBERT-base-uncased-abstract-fulltext-E2-S1-Mpairwise-FullDataTrue--BasicV2/tokenizer_config.json +14 -0
- microsoft-BiomedNLP-PubMedBERT-base-uncased-abstract-fulltext-E2-S1-Mpairwise-FullDataTrue--BasicV2/trainer_state.json +673 -0
- microsoft-BiomedNLP-PubMedBERT-base-uncased-abstract-fulltext-E2-S1-Mpairwise-FullDataTrue--BasicV2/training_args.bin +3 -0
microsoft-BiomedNLP-PubMedBERT-base-uncased-abstract-fulltext-E2-S1-Mpairwise-FullDataTrue--BasicV2/config.json
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{
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"add_cross_attention": false,
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+
"architectures": [
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"BertForSequenceClassification"
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],
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| 6 |
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"attention_probs_dropout_prob": 0.1,
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| 7 |
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"bos_token_id": null,
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| 8 |
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"classifier_dropout": null,
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| 9 |
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"dtype": "bfloat16",
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| 10 |
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"eos_token_id": null,
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| 11 |
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"hidden_act": "gelu",
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| 12 |
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"hidden_dropout_prob": 0.1,
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| 13 |
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"hidden_size": 768,
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| 14 |
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"id2label": {
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"0": "LABEL_0"
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},
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"initializer_range": 0.02,
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"intermediate_size": 3072,
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"is_decoder": false,
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"label2id": {
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"LABEL_0": 0
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},
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"layer_norm_eps": 1e-12,
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"max_position_embeddings": 512,
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| 25 |
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"model_type": "bert",
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| 26 |
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"num_attention_heads": 12,
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| 27 |
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"num_hidden_layers": 12,
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| 28 |
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"pad_token_id": 0,
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| 29 |
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"tie_word_embeddings": true,
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| 30 |
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"transformers_version": "5.2.0",
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| 31 |
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"type_vocab_size": 2,
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| 32 |
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"use_cache": false,
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| 33 |
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"vocab_size": 30522
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| 34 |
+
}
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microsoft-BiomedNLP-PubMedBERT-base-uncased-abstract-fulltext-E2-S1-Mpairwise-FullDataTrue--BasicV2/model.safetensors
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version https://git-lfs.github.com/spec/v1
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oid sha256:8357634fad695c21580bbba400c6559e1a305221be4c593ef1cc07785baba243
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+
size 218989610
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microsoft-BiomedNLP-PubMedBERT-base-uncased-abstract-fulltext-E2-S1-Mpairwise-FullDataTrue--BasicV2/ranx_results.json
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{
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"model": "microsoft-BiomedNLP-PubMedBERT-base-uncased-abstract-fulltext",
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"val_files": [
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"../../data/val_data/13B3_golden.json",
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"../../data/val_data/13B1_golden.json",
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"../../data/val_data/13B2_golden.json",
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"../../data/val_data/13B4_golden.json"
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],
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"total": {
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"ndcg@5": 0.7026386921686666,
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| 11 |
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"mrr": 0.843748441418182,
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| 12 |
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"recall@10": 0.4054228217080668,
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| 13 |
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"recall@100": 0.9330045483470067,
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| 14 |
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"map@10": 0.3496923840345957,
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| 15 |
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"map-bioasq@10": 0.558606632467802
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},
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| 17 |
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"13B3_golden.json": {
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| 18 |
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"ndcg@5": 0.6827938018880162,
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| 19 |
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"mrr": 0.8201680672268908,
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| 20 |
+
"recall@10": 0.4119602777789261,
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| 21 |
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"recall@100": 0.9433066974865248,
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| 22 |
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"map@10": 0.3378786931137886,
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| 23 |
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"map-bioasq@10": 0.5346999688764396
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| 24 |
+
},
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| 25 |
+
"13B1_golden.json": {
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| 26 |
+
"ndcg@5": 0.6630523756180331,
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| 27 |
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"mrr": 0.82517692134325,
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| 28 |
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"recall@10": 0.4652845552530976,
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| 29 |
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"recall@100": 0.9441816667502578,
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| 30 |
+
"map@10": 0.40483513731688686,
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| 31 |
+
"map-bioasq@10": 0.5335308456716019
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| 32 |
+
},
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| 33 |
+
"13B2_golden.json": {
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| 34 |
+
"ndcg@5": 0.7996481423814421,
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| 35 |
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"mrr": 0.8959803921568628,
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| 36 |
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"recall@10": 0.5040836152700942,
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| 37 |
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"recall@100": 0.9472924887765064,
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| 38 |
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"map@10": 0.4601829526280904,
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| 39 |
+
"map-bioasq@10": 0.6868414402798156
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| 40 |
+
},
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| 41 |
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"13B4_golden.json": {
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| 42 |
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"ndcg@5": 0.6650604487871751,
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| 43 |
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"mrr": 0.8336683849457243,
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| 44 |
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"recall@10": 0.2403628385301496,
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| 45 |
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"recall@100": 0.8972373403747378,
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| 46 |
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"map@10": 0.19587275307961696,
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| 47 |
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"map-bioasq@10": 0.4793542750433506
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| 48 |
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}
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| 49 |
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}
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microsoft-BiomedNLP-PubMedBERT-base-uncased-abstract-fulltext-E2-S1-Mpairwise-FullDataTrue--BasicV2/tokenizer.json
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The diff for this file is too large to render.
See raw diff
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microsoft-BiomedNLP-PubMedBERT-base-uncased-abstract-fulltext-E2-S1-Mpairwise-FullDataTrue--BasicV2/tokenizer_config.json
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{
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"backend": "tokenizers",
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"cls_token": "[CLS]",
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"do_lower_case": true,
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| 5 |
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"is_local": false,
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| 6 |
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"mask_token": "[MASK]",
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| 7 |
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"model_max_length": 1000000000000000019884624838656,
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| 8 |
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"pad_token": "[PAD]",
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| 9 |
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"sep_token": "[SEP]",
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| 10 |
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"strip_accents": null,
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| 11 |
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"tokenize_chinese_chars": true,
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| 12 |
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"tokenizer_class": "BertTokenizer",
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| 13 |
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"unk_token": "[UNK]"
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| 14 |
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}
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microsoft-BiomedNLP-PubMedBERT-base-uncased-abstract-fulltext-E2-S1-Mpairwise-FullDataTrue--BasicV2/trainer_state.json
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| 660 |
+
"should_epoch_stop": false,
|
| 661 |
+
"should_evaluate": false,
|
| 662 |
+
"should_log": false,
|
| 663 |
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"should_save": true,
|
| 664 |
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"should_training_stop": true
|
| 665 |
+
},
|
| 666 |
+
"attributes": {}
|
| 667 |
+
}
|
| 668 |
+
},
|
| 669 |
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"total_flos": 0.0,
|
| 670 |
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"train_batch_size": 16,
|
| 671 |
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"trial_name": null,
|
| 672 |
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"trial_params": null
|
| 673 |
+
}
|
microsoft-BiomedNLP-PubMedBERT-base-uncased-abstract-fulltext-E2-S1-Mpairwise-FullDataTrue--BasicV2/training_args.bin
ADDED
|
@@ -0,0 +1,3 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
version https://git-lfs.github.com/spec/v1
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| 2 |
+
oid sha256:9ecb20d0d3315369d34a76492d8b6518fdee828cf0f01bb1830aa4cda5dd26fd
|
| 3 |
+
size 5457
|