| algae-filelist.txt |
| cache/ |
| ckpt.pt |
| contam-filelist.txt |
| filelist.txt |
| generated_prompts_algae1.txt_headed.fa |
| generated_prompts_algae2.txt_headed.fa |
| generated_prompts_algae3.txt_headed.fa |
| generated_prompts_archa1.txt_headed.fa |
| generated_prompts_archa2.txt_headed.fa |
| generated_prompts_archa3.txt_headed.fa |
| generated_prompts_bact1.txt_headed.fa |
| generated_prompts_bact2.txt_headed.fa |
| generated_prompts_bact3.txt_headed.fa |
| generated_prompts_fungi1.txt_headed.fa |
| generated_prompts_fungi2.txt_headed.fa |
| generated_prompts_fungi3.txt_headed.fa |
| generated_prompts_virus1.txt_headed.fa |
| generated_prompts_virus2.txt_headed.fa |
| generated_prompts_virus3.txt_headed.fa |
| infer_TI-inc-algaGPT.py |
| la4sr_sp2.sif |
| la4sr_sp2.sif.md5 |
| llm-metrics-two-files.py |
| meta.pkl |
| model.py |
| out-algaGPT/ |
| __pycache__/ |
| __pycache__/model.cpython-312.pyc |
| README.txt |
| results-archive/ |
| results-archive/generated_prompts_algae3.txt_headed_vs_generated_prompts_bact3.txt_headed_misclassified.txt |
| results-archive/generated_prompts_algae3.txt_headed_vs_generated_prompts_virus3.txt_headed_bacterial_tagged.tsv |
| results-archive/generated_prompts_algae2.txt_headed_vs_generated_prompts_fungi2.txt_headed_metrics_by_class.png |
| results-archive/generated_prompts_algae2.txt_headed_vs_generated_prompts_archa2.txt_headed_confusion_matrix.png |
| results-archive/generated_prompts_algae3.txt_headed_vs_generated_prompts_bact3.txt_headed_algal_tagged.tsv |
| results-archive/generated_prompts_algae2.txt_headed_vs_generated_prompts_bact2.txt_headed_report.txt |
| results-archive/generated_prompts_algae3.txt_headed_vs_generated_prompts_fungi3.txt_headed_algal.tsv |
| results-archive/generated_prompts_algae1.txt_headed_vs_generated_prompts_bact1.txt_headed_algal_tagged.tsv |
| results-archive/generated_prompts_algae3.txt_headed_vs_generated_prompts_archa3.txt_headed_metrics_by_class.png |
| results-archive/generated_prompts_algae3.txt_headed_vs_generated_prompts_fungi3.txt_headed_report.txt |
| results-archive/generated_prompts_algae3.txt_headed_vs_generated_prompts_virus3.txt_headed_bacterial.tsv |
| results-archive/generated_prompts_algae2.txt_headed_vs_generated_prompts_virus2.txt_headed_bacterial.tsv |
| results-archive/generated_prompts_algae3.txt_headed_vs_generated_prompts_virus3.txt_headed_algal.tsv |
| results-archive/generated_prompts_algae1.txt_headed_vs_generated_prompts_bact1.txt_headed_metrics_by_class.png |
| results-archive/generated_prompts_algae1.txt_headed_vs_generated_prompts_bact1.txt_headed_bacterial.tsv |
| results-archive/generated_prompts_algae2.txt_headed_vs_generated_prompts_fungi2.txt_headed_class_distribution.png |
| results-archive/generated_prompts_algae2.txt_headed_vs_generated_prompts_archa2.txt_headed_metrics_by_class.png |
| results-archive/generated_prompts_algae1.txt_headed_vs_generated_prompts_archa1.txt_headed_misclassified.txt |
| results-archive/generated_prompts_algae2.txt_headed_vs_generated_prompts_bact2.txt_headed_algal.tsv |
| results-archive/generated_prompts_algae1.txt_headed_vs_generated_prompts_virus1.txt_headed_bacterial.tsv |
| results-archive/generated_prompts_algae1.txt_headed_vs_generated_prompts_virus1.txt_headed_metrics_by_class.png |
| results-archive/generated_prompts_algae1.txt_headed_vs_generated_prompts_virus1.txt_headed_class_distribution.png |
| results-archive/generated_prompts_algae1.txt_headed_vs_generated_prompts_archa1.txt_headed_bacterial_tagged.tsv |
| results-archive/generated_prompts_algae3.txt_headed_vs_generated_prompts_bact3.txt_headed_metrics_by_class.png |
| results-archive/generated_prompts_algae3.txt_headed_vs_generated_prompts_fungi3.txt_headed_misclassified.txt |
| results-archive/generated_prompts_algae2.txt_headed_vs_generated_prompts_virus2.txt_headed_confusion_matrix.png |
| results-archive/generated_prompts_algae1.txt_headed_vs_generated_prompts_fungi1.txt_headed_class_distribution.png |
| results-archive/generated_prompts_algae1.txt_headed_vs_generated_prompts_virus1.txt_headed_algal.tsv |
| results-archive/generated_prompts_algae3.txt_headed_vs_generated_prompts_fungi3.txt_headed_confusion_matrix.png |
| results-archive/generated_prompts_algae2.txt_headed_vs_generated_prompts_archa2.txt_headed_bacterial_tagged.tsv |
| results-archive/generated_prompts_algae1.txt_headed_vs_generated_prompts_archa1.txt_headed_bacterial.tsv |
| results-archive/generated_prompts_algae3.txt_headed_vs_generated_prompts_fungi3.txt_headed_bacterial_tagged.tsv |
| results-archive/generated_prompts_algae3.txt_headed_vs_generated_prompts_bact3.txt_headed_bacterial.tsv |
| results-archive/generated_prompts_algae3.txt_headed_vs_generated_prompts_virus3.txt_headed_class_distribution.png |
| results-archive/generated_prompts_algae1.txt_headed_vs_generated_prompts_fungi1.txt_headed_misclassified.txt |
| results-archive/generated_prompts_algae3.txt_headed_vs_generated_prompts_virus3.txt_headed_report.txt |
| results-archive/generated_prompts_algae2.txt_headed_vs_generated_prompts_archa2.txt_headed_algal_tagged.tsv |
| results-archive/generated_prompts_algae3.txt_headed_vs_generated_prompts_archa3.txt_headed_class_distribution.png |
| results-archive/generated_prompts_algae1.txt_headed_vs_generated_prompts_archa1.txt_headed_class_distribution.png |
| results-archive/generated_prompts_algae2.txt_headed_vs_generated_prompts_virus2.txt_headed_misclassified.txt |
| results-archive/generated_prompts_algae1.txt_headed_vs_generated_prompts_bact1.txt_headed_bacterial_tagged.tsv |
| results-archive/generated_prompts_algae2.txt_headed_vs_generated_prompts_archa2.txt_headed_algal.tsv |
| results-archive/generated_prompts_algae1.txt_headed_vs_generated_prompts_fungi1.txt_headed_algal.tsv |
| results-archive/generated_prompts_algae2.txt_headed_vs_generated_prompts_virus2.txt_headed_class_distribution.png |
| results-archive/generated_prompts_algae2.txt_headed_vs_generated_prompts_fungi2.txt_headed_algal_tagged.tsv |
| results-archive/generated_prompts_algae1.txt_headed_vs_generated_prompts_virus1.txt_headed_bacterial_tagged.tsv |
| results-archive/generated_prompts_algae3.txt_headed_vs_generated_prompts_archa3.txt_headed_bacterial.tsv |
| results-archive/generated_prompts_algae1.txt_headed_vs_generated_prompts_virus1.txt_headed_report.txt |
| results-archive/generated_prompts_algae3.txt_headed_vs_generated_prompts_bact3.txt_headed_algal.tsv |
| results-archive/generated_prompts_algae1.txt_headed_vs_generated_prompts_archa1.txt_headed_algal.tsv |
| results-archive/generated_prompts_algae2.txt_headed_vs_generated_prompts_virus2.txt_headed_metrics_by_class.png |
| results-archive/generated_prompts_algae2.txt_headed_vs_generated_prompts_fungi2.txt_headed_algal.tsv |
| results-archive/generated_prompts_algae1.txt_headed_vs_generated_prompts_bact1.txt_headed_algal.tsv |
| results-archive/generated_prompts_algae3.txt_headed_vs_generated_prompts_fungi3.txt_headed_class_distribution.png |
| results-archive/generated_prompts_algae2.txt_headed_vs_generated_prompts_archa2.txt_headed_class_distribution.png |
| results-archive/generated_prompts_algae2.txt_headed_vs_generated_prompts_bact2.txt_headed_bacterial.tsv |
| results-archive/generated_prompts_algae3.txt_headed_vs_generated_prompts_bact3.txt_headed_class_distribution.png |
| results-archive/generated_prompts_algae3.txt_headed_vs_generated_prompts_virus3.txt_headed_algal_tagged.tsv |
| results-archive/generated_prompts_algae3.txt_headed_vs_generated_prompts_fungi3.txt_headed_algal_tagged.tsv |
| results-archive/generated_prompts_algae2.txt_headed_vs_generated_prompts_virus2.txt_headed_algal_tagged.tsv |
| results-archive/generated_prompts_algae1.txt_headed_vs_generated_prompts_archa1.txt_headed_algal_tagged.tsv |
| results-archive/generated_prompts_algae2.txt_headed_vs_generated_prompts_fungi2.txt_headed_confusion_matrix.png |
| results-archive/generated_prompts_algae2.txt_headed_vs_generated_prompts_virus2.txt_headed_algal.tsv |
| results-archive/generated_prompts_algae1.txt_headed_vs_generated_prompts_fungi1.txt_headed_algal_tagged.tsv |
| results-archive/generated_prompts_algae3.txt_headed_vs_generated_prompts_archa3.txt_headed_report.txt |
| results-archive/generated_prompts_algae2.txt_headed_vs_generated_prompts_archa2.txt_headed_report.txt |
| results-archive/generated_prompts_algae3.txt_headed_vs_generated_prompts_archa3.txt_headed_algal.tsv |
| results-archive/generated_prompts_algae2.txt_headed_vs_generated_prompts_archa2.txt_headed_misclassified.txt |
| results-archive/generated_prompts_algae1.txt_headed_vs_generated_prompts_virus1.txt_headed_misclassified.txt |
| results-archive/generated_prompts_algae1.txt_headed_vs_generated_prompts_fungi1.txt_headed_report.txt |
| results-archive/generated_prompts_algae1.txt_headed_vs_generated_prompts_bact1.txt_headed_report.txt |
| results-archive/generated_prompts_algae2.txt_headed_vs_generated_prompts_fungi2.txt_headed_misclassified.txt |
| results-archive/generated_prompts_algae2.txt_headed_vs_generated_prompts_virus2.txt_headed_report.txt |
| results-archive/generated_prompts_algae1.txt_headed_vs_generated_prompts_archa1.txt_headed_metrics_by_class.png |
| results-archive/generated_prompts_algae2.txt_headed_vs_generated_prompts_bact2.txt_headed_confusion_matrix.png |
| results-archive/generated_prompts_algae2.txt_headed_vs_generated_prompts_bact2.txt_headed_misclassified.txt |
| results-archive/generated_prompts_algae2.txt_headed_vs_generated_prompts_archa2.txt_headed_bacterial.tsv |
| results-archive/generated_prompts_algae2.txt_headed_vs_generated_prompts_fungi2.txt_headed_bacterial_tagged.tsv |
| results-archive/generated_prompts_algae2.txt_headed_vs_generated_prompts_bact2.txt_headed_bacterial_tagged.tsv |
| results-archive/generated_prompts_algae3.txt_headed_vs_generated_prompts_virus3.txt_headed_metrics_by_class.png |
| results-archive/generated_prompts_algae2.txt_headed_vs_generated_prompts_bact2.txt_headed_class_distribution.png |
| results-archive/generated_prompts_algae2.txt_headed_vs_generated_prompts_fungi2.txt_headed_bacterial.tsv |
| results-archive/generated_prompts_algae3.txt_headed_vs_generated_prompts_archa3.txt_headed_bacterial_tagged.tsv |
| results-archive/generated_prompts_algae1.txt_headed_vs_generated_prompts_archa1.txt_headed_report.txt |
| results-archive/generated_prompts_algae2.txt_headed_vs_generated_prompts_virus2.txt_headed_bacterial_tagged.tsv |
| results-archive/generated_prompts_algae1.txt_headed_vs_generated_prompts_bact1.txt_headed_class_distribution.png |
| results-archive/generated_prompts_algae1.txt_headed_vs_generated_prompts_bact1.txt_headed_confusion_matrix.png |
| results-archive/generated_prompts_algae3.txt_headed_vs_generated_prompts_virus3.txt_headed_confusion_matrix.png |
| results-archive/generated_prompts_algae1.txt_headed_vs_generated_prompts_virus1.txt_headed_algal_tagged.tsv |
| results-archive/generated_prompts_algae1.txt_headed_vs_generated_prompts_bact1.txt_headed_misclassified.txt |
| results-archive/generated_prompts_algae1.txt_headed_vs_generated_prompts_fungi1.txt_headed_bacterial.tsv |
| results-archive/generated_prompts_algae3.txt_headed_vs_generated_prompts_fungi3.txt_headed_metrics_by_class.png |
| results-archive/generated_prompts_algae3.txt_headed_vs_generated_prompts_archa3.txt_headed_algal_tagged.tsv |
| results-archive/generated_prompts_algae1.txt_headed_vs_generated_prompts_fungi1.txt_headed_bacterial_tagged.tsv |
| results-archive/generated_prompts_algae3.txt_headed_vs_generated_prompts_bact3.txt_headed_report.txt |
| results-archive/generated_prompts_algae3.txt_headed_vs_generated_prompts_bact3.txt_headed_bacterial_tagged.tsv |
| results-archive/generated_prompts_algae1.txt_headed_vs_generated_prompts_fungi1.txt_headed_confusion_matrix.png |
| results-archive/generated_prompts_algae1.txt_headed_vs_generated_prompts_fungi1.txt_headed_metrics_by_class.png |
| results-archive/generated_prompts_algae2.txt_headed_vs_generated_prompts_bact2.txt_headed_metrics_by_class.png |
| results-archive/generated_prompts_algae3.txt_headed_vs_generated_prompts_archa3.txt_headed_confusion_matrix.png |
| results-archive/generated_prompts_algae1.txt_headed_vs_generated_prompts_virus1.txt_headed_confusion_matrix.png |
| results-archive/generated_prompts_algae3.txt_headed_vs_generated_prompts_archa3.txt_headed_misclassified.txt |
| results-archive/generated_prompts_algae2.txt_headed_vs_generated_prompts_bact2.txt_headed_algal_tagged.tsv |
| results-archive/generated_prompts_algae1.txt_headed_vs_generated_prompts_archa1.txt_headed_confusion_matrix.png |
| results-archive/generated_prompts_algae3.txt_headed_vs_generated_prompts_virus3.txt_headed_misclassified.txt |
| results-archive/generated_prompts_algae3.txt_headed_vs_generated_prompts_fungi3.txt_headed_bacterial.tsv |
| results-archive/generated_prompts_algae2.txt_headed_vs_generated_prompts_fungi2.txt_headed_report.txt |
| results-archive/generated_prompts_algae3.txt_headed_vs_generated_prompts_bact3.txt_headed_confusion_matrix.png |
| run_la4sr_loop.sbatch |
| run_la4sr_TI-inc-algaGPT.sh |
| slurm-10718799.out |
| tar: slurm-10718799.out: file changed as we read it |
| slurm-logs/ |
| slurm-logs/arrayJob_10718778_2.err |
| slurm-logs/arrayJob_10718764_10.err |
| slurm-logs/arrayJob_10718778_8.err |
| slurm-logs/arrayJob_10718778_7.err |
| slurm-logs/arrayJob_10718764_9.out |
| slurm-logs/arrayJob_10718778_11.out |
| slurm-logs/arrayJob_10718764_4.err |
| slurm-logs/arrayJob_10718778_9.err |
| slurm-logs/arrayJob_10718764_10.out |
| slurm-logs/arrayJob_10718778_6.err |
| slurm-logs/arrayJob_10718778_1.err |
| slurm-logs/arrayJob_10718764_11.out |
| slurm-logs/arrayJob_10718778_12.out |
| slurm-logs/arrayJob_10718778_9.out |
| slurm-logs/arrayJob_10718764_11.err |
| slurm-logs/arrayJob_10718778_10.out |
| slurm-logs/arrayJob_10718764_9.err |
| slurm-logs/arrayJob_10718764_2.out |
| slurm-logs/arrayJob_10718778_2.out |
| slurm-logs/arrayJob_10718778_5.out |
| slurm-logs/arrayJob_10718764_12.out |
| slurm-logs/arrayJob_10718764_1.err |
| slurm-logs/arrayJob_10718764_8.err |
| slurm-logs/arrayJob_10718764_3.err |
| slurm-logs/arrayJob_10718778_1.out |
| slurm-logs/arrayJob_10718764_2.err |
| slurm-logs/arrayJob_10718778_10.err |
| slurm-logs/arrayJob_10718778_3.err |
| slurm-logs/arrayJob_10718778_5.err |
| slurm-logs/arrayJob_10718778_8.out |
| slurm-logs/arrayJob_10718778_4.out |
| slurm-logs/arrayJob_10718764_7.err |
| slurm-logs/arrayJob_10718778_3.out |
| slurm-logs/arrayJob_10718778_12.err |
| slurm-logs/arrayJob_10718764_3.out |
| slurm-logs/arrayJob_10718764_6.out |
| slurm-logs/arrayJob_10718764_5.err |
| slurm-logs/arrayJob_10718778_7.out |
| slurm-logs/arrayJob_10718764_7.out |
| slurm-logs/arrayJob_10718764_4.out |
| slurm-logs/arrayJob_10718764_6.err |
| slurm-logs/arrayJob_10718778_4.err |
| slurm-logs/arrayJob_10718764_5.out |
| slurm-logs/arrayJob_10718778_6.out |
| slurm-logs/arrayJob_10718764_1.out |
| slurm-logs/arrayJob_10718764_8.out |
| slurm-logs/arrayJob_10718764_12.err |
| slurm-logs/arrayJob_10718778_11.err |
| targz.sh |
|
|
