Upload folder using huggingface_hub
Browse filesThis view is limited to 50 files because it contains too many changes. See raw diff
- .DS_Store +0 -0
- checkpoint-104/config.json +46 -0
- checkpoint-104/model.safetensors +3 -0
- checkpoint-104/optimizer.pt +3 -0
- checkpoint-104/rng_state.pth +3 -0
- checkpoint-104/scheduler.pt +3 -0
- checkpoint-104/tokenizer.json +0 -0
- checkpoint-104/tokenizer_config.json +14 -0
- checkpoint-104/trainer_state.json +92 -0
- checkpoint-104/training_args.bin +3 -0
- checkpoint-130/config.json +46 -0
- checkpoint-130/model.safetensors +3 -0
- checkpoint-130/optimizer.pt +3 -0
- checkpoint-130/rng_state.pth +3 -0
- checkpoint-130/scheduler.pt +3 -0
- checkpoint-130/tokenizer.json +0 -0
- checkpoint-130/tokenizer_config.json +14 -0
- checkpoint-130/trainer_state.json +103 -0
- checkpoint-130/training_args.bin +3 -0
- checkpoint-156/config.json +46 -0
- checkpoint-156/model.safetensors +3 -0
- checkpoint-156/optimizer.pt +3 -0
- checkpoint-156/rng_state.pth +3 -0
- checkpoint-156/scheduler.pt +3 -0
- checkpoint-156/tokenizer.json +0 -0
- checkpoint-156/tokenizer_config.json +14 -0
- checkpoint-156/trainer_state.json +121 -0
- checkpoint-156/training_args.bin +3 -0
- checkpoint-26/model.safetensors +1 -1
- checkpoint-26/optimizer.pt +2 -2
- checkpoint-26/rng_state.pth +1 -1
- checkpoint-26/scheduler.pt +1 -1
- checkpoint-26/tokenizer.json +2 -2
- checkpoint-26/trainer_state.json +12 -12
- checkpoint-26/training_args.bin +1 -1
- checkpoint-52/model.safetensors +1 -1
- checkpoint-52/optimizer.pt +2 -2
- checkpoint-52/rng_state.pth +1 -1
- checkpoint-52/scheduler.pt +1 -1
- checkpoint-52/tokenizer.json +2 -2
- checkpoint-52/trainer_state.json +22 -22
- checkpoint-52/training_args.bin +1 -1
- checkpoint-78/model.safetensors +1 -1
- checkpoint-78/optimizer.pt +2 -2
- checkpoint-78/rng_state.pth +1 -1
- checkpoint-78/scheduler.pt +1 -1
- checkpoint-78/tokenizer.json +2 -2
- checkpoint-78/trainer_state.json +30 -30
- checkpoint-78/training_args.bin +1 -1
- model.safetensors +1 -1
.DS_Store
ADDED
|
Binary file (8.2 kB). View file
|
|
|
checkpoint-104/config.json
ADDED
|
@@ -0,0 +1,46 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"add_cross_attention": false,
|
| 3 |
+
"architectures": [
|
| 4 |
+
"BertForTokenClassification"
|
| 5 |
+
],
|
| 6 |
+
"attention_probs_dropout_prob": 0.1,
|
| 7 |
+
"bos_token_id": null,
|
| 8 |
+
"classifier_dropout": null,
|
| 9 |
+
"dtype": "float32",
|
| 10 |
+
"eos_token_id": null,
|
| 11 |
+
"hidden_act": "gelu",
|
| 12 |
+
"hidden_dropout_prob": 0.1,
|
| 13 |
+
"hidden_size": 768,
|
| 14 |
+
"id2label": {
|
| 15 |
+
"0": "B-ADE",
|
| 16 |
+
"1": "B-AGE",
|
| 17 |
+
"2": "B-DRUG",
|
| 18 |
+
"3": "I-ADE",
|
| 19 |
+
"4": "I-AGE",
|
| 20 |
+
"5": "I-DRUG",
|
| 21 |
+
"6": "O"
|
| 22 |
+
},
|
| 23 |
+
"initializer_range": 0.02,
|
| 24 |
+
"intermediate_size": 3072,
|
| 25 |
+
"is_decoder": false,
|
| 26 |
+
"label2id": {
|
| 27 |
+
"B-ADE": 0,
|
| 28 |
+
"B-AGE": 1,
|
| 29 |
+
"B-DRUG": 2,
|
| 30 |
+
"I-ADE": 3,
|
| 31 |
+
"I-AGE": 4,
|
| 32 |
+
"I-DRUG": 5,
|
| 33 |
+
"O": 6
|
| 34 |
+
},
|
| 35 |
+
"layer_norm_eps": 1e-12,
|
| 36 |
+
"max_position_embeddings": 512,
|
| 37 |
+
"model_type": "bert",
|
| 38 |
+
"num_attention_heads": 12,
|
| 39 |
+
"num_hidden_layers": 12,
|
| 40 |
+
"pad_token_id": 0,
|
| 41 |
+
"tie_word_embeddings": true,
|
| 42 |
+
"transformers_version": "5.3.0",
|
| 43 |
+
"type_vocab_size": 2,
|
| 44 |
+
"use_cache": false,
|
| 45 |
+
"vocab_size": 28996
|
| 46 |
+
}
|
checkpoint-104/model.safetensors
ADDED
|
@@ -0,0 +1,3 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
version https://git-lfs.github.com/spec/v1
|
| 2 |
+
oid sha256:be524d20e72a49452e9c17b768a95af44cbcd1be2136c087389ecde98e54978a
|
| 3 |
+
size 430923564
|
checkpoint-104/optimizer.pt
ADDED
|
@@ -0,0 +1,3 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
version https://git-lfs.github.com/spec/v1
|
| 2 |
+
oid sha256:ddfa9681c3a7a174a931529b85f7f2c0d9b26beb70b541f46ee0014025cbb639
|
| 3 |
+
size 226911819
|
checkpoint-104/rng_state.pth
ADDED
|
@@ -0,0 +1,3 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
version https://git-lfs.github.com/spec/v1
|
| 2 |
+
oid sha256:35f9ae804b67082c0f5e66aaffc58dbaf19219b300adf8a8537f84981da0a4ee
|
| 3 |
+
size 14645
|
checkpoint-104/scheduler.pt
ADDED
|
@@ -0,0 +1,3 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
version https://git-lfs.github.com/spec/v1
|
| 2 |
+
oid sha256:211440b956b84618efb5795f4adc8c7b304b277a8f154839104dd8279ad04d0f
|
| 3 |
+
size 1465
|
checkpoint-104/tokenizer.json
ADDED
|
The diff for this file is too large to render.
See raw diff
|
|
|
checkpoint-104/tokenizer_config.json
ADDED
|
@@ -0,0 +1,14 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"backend": "tokenizers",
|
| 3 |
+
"cls_token": "[CLS]",
|
| 4 |
+
"do_lower_case": true,
|
| 5 |
+
"is_local": false,
|
| 6 |
+
"mask_token": "[MASK]",
|
| 7 |
+
"model_max_length": 1000000000000000019884624838656,
|
| 8 |
+
"pad_token": "[PAD]",
|
| 9 |
+
"sep_token": "[SEP]",
|
| 10 |
+
"strip_accents": null,
|
| 11 |
+
"tokenize_chinese_chars": true,
|
| 12 |
+
"tokenizer_class": "BertTokenizer",
|
| 13 |
+
"unk_token": "[UNK]"
|
| 14 |
+
}
|
checkpoint-104/trainer_state.json
ADDED
|
@@ -0,0 +1,92 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"best_global_step": 104,
|
| 3 |
+
"best_metric": 0.44260814785957336,
|
| 4 |
+
"best_model_checkpoint": "/content/drive/MyDrive/ADEGuard/ner_biobert_final_v2/checkpoint-104",
|
| 5 |
+
"epoch": 4.0,
|
| 6 |
+
"eval_steps": 500,
|
| 7 |
+
"global_step": 104,
|
| 8 |
+
"is_hyper_param_search": false,
|
| 9 |
+
"is_local_process_zero": true,
|
| 10 |
+
"is_world_process_zero": true,
|
| 11 |
+
"log_history": [
|
| 12 |
+
{
|
| 13 |
+
"epoch": 1.0,
|
| 14 |
+
"eval_f1": 0.00783944810285356,
|
| 15 |
+
"eval_loss": 1.139850378036499,
|
| 16 |
+
"eval_precision": 0.0039488232506713,
|
| 17 |
+
"eval_recall": 0.5319148936170213,
|
| 18 |
+
"eval_runtime": 0.5321,
|
| 19 |
+
"eval_samples_per_second": 48.861,
|
| 20 |
+
"eval_steps_per_second": 7.517,
|
| 21 |
+
"step": 26
|
| 22 |
+
},
|
| 23 |
+
{
|
| 24 |
+
"epoch": 1.9230769230769231,
|
| 25 |
+
"grad_norm": 2.009291410446167,
|
| 26 |
+
"learning_rate": 2.057692307692308e-05,
|
| 27 |
+
"loss": 1.1273328399658202,
|
| 28 |
+
"step": 50
|
| 29 |
+
},
|
| 30 |
+
{
|
| 31 |
+
"epoch": 2.0,
|
| 32 |
+
"eval_f1": 0.009548896937767533,
|
| 33 |
+
"eval_loss": 0.6769160032272339,
|
| 34 |
+
"eval_precision": 0.004811680769868923,
|
| 35 |
+
"eval_recall": 0.6170212765957447,
|
| 36 |
+
"eval_runtime": 0.4451,
|
| 37 |
+
"eval_samples_per_second": 58.415,
|
| 38 |
+
"eval_steps_per_second": 8.987,
|
| 39 |
+
"step": 52
|
| 40 |
+
},
|
| 41 |
+
{
|
| 42 |
+
"epoch": 3.0,
|
| 43 |
+
"eval_f1": 0.011583871686344399,
|
| 44 |
+
"eval_loss": 0.5276753902435303,
|
| 45 |
+
"eval_precision": 0.00585321927059883,
|
| 46 |
+
"eval_recall": 0.5531914893617021,
|
| 47 |
+
"eval_runtime": 0.5507,
|
| 48 |
+
"eval_samples_per_second": 47.215,
|
| 49 |
+
"eval_steps_per_second": 7.264,
|
| 50 |
+
"step": 78
|
| 51 |
+
},
|
| 52 |
+
{
|
| 53 |
+
"epoch": 3.8461538461538463,
|
| 54 |
+
"grad_norm": 3.652482748031616,
|
| 55 |
+
"learning_rate": 1.0961538461538462e-05,
|
| 56 |
+
"loss": 0.4301648712158203,
|
| 57 |
+
"step": 100
|
| 58 |
+
},
|
| 59 |
+
{
|
| 60 |
+
"epoch": 4.0,
|
| 61 |
+
"eval_f1": 0.03429923122412773,
|
| 62 |
+
"eval_loss": 0.44260814785957336,
|
| 63 |
+
"eval_precision": 0.017639902676399026,
|
| 64 |
+
"eval_recall": 0.6170212765957447,
|
| 65 |
+
"eval_runtime": 0.4831,
|
| 66 |
+
"eval_samples_per_second": 53.818,
|
| 67 |
+
"eval_steps_per_second": 8.28,
|
| 68 |
+
"step": 104
|
| 69 |
+
}
|
| 70 |
+
],
|
| 71 |
+
"logging_steps": 50,
|
| 72 |
+
"max_steps": 156,
|
| 73 |
+
"num_input_tokens_seen": 0,
|
| 74 |
+
"num_train_epochs": 6,
|
| 75 |
+
"save_steps": 500,
|
| 76 |
+
"stateful_callbacks": {
|
| 77 |
+
"TrainerControl": {
|
| 78 |
+
"args": {
|
| 79 |
+
"should_epoch_stop": false,
|
| 80 |
+
"should_evaluate": false,
|
| 81 |
+
"should_log": false,
|
| 82 |
+
"should_save": true,
|
| 83 |
+
"should_training_stop": false
|
| 84 |
+
},
|
| 85 |
+
"attributes": {}
|
| 86 |
+
}
|
| 87 |
+
},
|
| 88 |
+
"total_flos": 54352182263808.0,
|
| 89 |
+
"train_batch_size": 4,
|
| 90 |
+
"trial_name": null,
|
| 91 |
+
"trial_params": null
|
| 92 |
+
}
|
checkpoint-104/training_args.bin
ADDED
|
@@ -0,0 +1,3 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
version https://git-lfs.github.com/spec/v1
|
| 2 |
+
oid sha256:28773adb83572bc94ef9e073a42eb194223d823b5b140ca2b7c77bf0c3f76e9e
|
| 3 |
+
size 5201
|
checkpoint-130/config.json
ADDED
|
@@ -0,0 +1,46 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"add_cross_attention": false,
|
| 3 |
+
"architectures": [
|
| 4 |
+
"BertForTokenClassification"
|
| 5 |
+
],
|
| 6 |
+
"attention_probs_dropout_prob": 0.1,
|
| 7 |
+
"bos_token_id": null,
|
| 8 |
+
"classifier_dropout": null,
|
| 9 |
+
"dtype": "float32",
|
| 10 |
+
"eos_token_id": null,
|
| 11 |
+
"hidden_act": "gelu",
|
| 12 |
+
"hidden_dropout_prob": 0.1,
|
| 13 |
+
"hidden_size": 768,
|
| 14 |
+
"id2label": {
|
| 15 |
+
"0": "B-ADE",
|
| 16 |
+
"1": "B-AGE",
|
| 17 |
+
"2": "B-DRUG",
|
| 18 |
+
"3": "I-ADE",
|
| 19 |
+
"4": "I-AGE",
|
| 20 |
+
"5": "I-DRUG",
|
| 21 |
+
"6": "O"
|
| 22 |
+
},
|
| 23 |
+
"initializer_range": 0.02,
|
| 24 |
+
"intermediate_size": 3072,
|
| 25 |
+
"is_decoder": false,
|
| 26 |
+
"label2id": {
|
| 27 |
+
"B-ADE": 0,
|
| 28 |
+
"B-AGE": 1,
|
| 29 |
+
"B-DRUG": 2,
|
| 30 |
+
"I-ADE": 3,
|
| 31 |
+
"I-AGE": 4,
|
| 32 |
+
"I-DRUG": 5,
|
| 33 |
+
"O": 6
|
| 34 |
+
},
|
| 35 |
+
"layer_norm_eps": 1e-12,
|
| 36 |
+
"max_position_embeddings": 512,
|
| 37 |
+
"model_type": "bert",
|
| 38 |
+
"num_attention_heads": 12,
|
| 39 |
+
"num_hidden_layers": 12,
|
| 40 |
+
"pad_token_id": 0,
|
| 41 |
+
"tie_word_embeddings": true,
|
| 42 |
+
"transformers_version": "5.3.0",
|
| 43 |
+
"type_vocab_size": 2,
|
| 44 |
+
"use_cache": false,
|
| 45 |
+
"vocab_size": 28996
|
| 46 |
+
}
|
checkpoint-130/model.safetensors
ADDED
|
@@ -0,0 +1,3 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
version https://git-lfs.github.com/spec/v1
|
| 2 |
+
oid sha256:3952445c17e00ef94784c968198848e7e752ac66bab27f0f790c5b33d02710bf
|
| 3 |
+
size 430923564
|
checkpoint-130/optimizer.pt
ADDED
|
@@ -0,0 +1,3 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
version https://git-lfs.github.com/spec/v1
|
| 2 |
+
oid sha256:d1b52c2190e61ededd59d82375ff39255d5514b5f7515890526a252726477dda
|
| 3 |
+
size 226911819
|
checkpoint-130/rng_state.pth
ADDED
|
@@ -0,0 +1,3 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
version https://git-lfs.github.com/spec/v1
|
| 2 |
+
oid sha256:ffd56c42ada7f08402b22f05bde9943acf13d0f86760a91a934f02bec06e3f74
|
| 3 |
+
size 14645
|
checkpoint-130/scheduler.pt
ADDED
|
@@ -0,0 +1,3 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
version https://git-lfs.github.com/spec/v1
|
| 2 |
+
oid sha256:6cd97dc6d2b9e48dd48b602ecbfe0bc2440557eb03cb5f43b959e23c524fadba
|
| 3 |
+
size 1465
|
checkpoint-130/tokenizer.json
ADDED
|
The diff for this file is too large to render.
See raw diff
|
|
|
checkpoint-130/tokenizer_config.json
ADDED
|
@@ -0,0 +1,14 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"backend": "tokenizers",
|
| 3 |
+
"cls_token": "[CLS]",
|
| 4 |
+
"do_lower_case": true,
|
| 5 |
+
"is_local": false,
|
| 6 |
+
"mask_token": "[MASK]",
|
| 7 |
+
"model_max_length": 1000000000000000019884624838656,
|
| 8 |
+
"pad_token": "[PAD]",
|
| 9 |
+
"sep_token": "[SEP]",
|
| 10 |
+
"strip_accents": null,
|
| 11 |
+
"tokenize_chinese_chars": true,
|
| 12 |
+
"tokenizer_class": "BertTokenizer",
|
| 13 |
+
"unk_token": "[UNK]"
|
| 14 |
+
}
|
checkpoint-130/trainer_state.json
ADDED
|
@@ -0,0 +1,103 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"best_global_step": 130,
|
| 3 |
+
"best_metric": 0.42207130789756775,
|
| 4 |
+
"best_model_checkpoint": "/content/drive/MyDrive/ADEGuard/ner_biobert_final_v2/checkpoint-130",
|
| 5 |
+
"epoch": 5.0,
|
| 6 |
+
"eval_steps": 500,
|
| 7 |
+
"global_step": 130,
|
| 8 |
+
"is_hyper_param_search": false,
|
| 9 |
+
"is_local_process_zero": true,
|
| 10 |
+
"is_world_process_zero": true,
|
| 11 |
+
"log_history": [
|
| 12 |
+
{
|
| 13 |
+
"epoch": 1.0,
|
| 14 |
+
"eval_f1": 0.00783944810285356,
|
| 15 |
+
"eval_loss": 1.139850378036499,
|
| 16 |
+
"eval_precision": 0.0039488232506713,
|
| 17 |
+
"eval_recall": 0.5319148936170213,
|
| 18 |
+
"eval_runtime": 0.5321,
|
| 19 |
+
"eval_samples_per_second": 48.861,
|
| 20 |
+
"eval_steps_per_second": 7.517,
|
| 21 |
+
"step": 26
|
| 22 |
+
},
|
| 23 |
+
{
|
| 24 |
+
"epoch": 1.9230769230769231,
|
| 25 |
+
"grad_norm": 2.009291410446167,
|
| 26 |
+
"learning_rate": 2.057692307692308e-05,
|
| 27 |
+
"loss": 1.1273328399658202,
|
| 28 |
+
"step": 50
|
| 29 |
+
},
|
| 30 |
+
{
|
| 31 |
+
"epoch": 2.0,
|
| 32 |
+
"eval_f1": 0.009548896937767533,
|
| 33 |
+
"eval_loss": 0.6769160032272339,
|
| 34 |
+
"eval_precision": 0.004811680769868923,
|
| 35 |
+
"eval_recall": 0.6170212765957447,
|
| 36 |
+
"eval_runtime": 0.4451,
|
| 37 |
+
"eval_samples_per_second": 58.415,
|
| 38 |
+
"eval_steps_per_second": 8.987,
|
| 39 |
+
"step": 52
|
| 40 |
+
},
|
| 41 |
+
{
|
| 42 |
+
"epoch": 3.0,
|
| 43 |
+
"eval_f1": 0.011583871686344399,
|
| 44 |
+
"eval_loss": 0.5276753902435303,
|
| 45 |
+
"eval_precision": 0.00585321927059883,
|
| 46 |
+
"eval_recall": 0.5531914893617021,
|
| 47 |
+
"eval_runtime": 0.5507,
|
| 48 |
+
"eval_samples_per_second": 47.215,
|
| 49 |
+
"eval_steps_per_second": 7.264,
|
| 50 |
+
"step": 78
|
| 51 |
+
},
|
| 52 |
+
{
|
| 53 |
+
"epoch": 3.8461538461538463,
|
| 54 |
+
"grad_norm": 3.652482748031616,
|
| 55 |
+
"learning_rate": 1.0961538461538462e-05,
|
| 56 |
+
"loss": 0.4301648712158203,
|
| 57 |
+
"step": 100
|
| 58 |
+
},
|
| 59 |
+
{
|
| 60 |
+
"epoch": 4.0,
|
| 61 |
+
"eval_f1": 0.03429923122412773,
|
| 62 |
+
"eval_loss": 0.44260814785957336,
|
| 63 |
+
"eval_precision": 0.017639902676399026,
|
| 64 |
+
"eval_recall": 0.6170212765957447,
|
| 65 |
+
"eval_runtime": 0.4831,
|
| 66 |
+
"eval_samples_per_second": 53.818,
|
| 67 |
+
"eval_steps_per_second": 8.28,
|
| 68 |
+
"step": 104
|
| 69 |
+
},
|
| 70 |
+
{
|
| 71 |
+
"epoch": 5.0,
|
| 72 |
+
"eval_f1": 0.040502793296089384,
|
| 73 |
+
"eval_loss": 0.42207130789756775,
|
| 74 |
+
"eval_precision": 0.020938628158844765,
|
| 75 |
+
"eval_recall": 0.6170212765957447,
|
| 76 |
+
"eval_runtime": 0.4485,
|
| 77 |
+
"eval_samples_per_second": 57.967,
|
| 78 |
+
"eval_steps_per_second": 8.918,
|
| 79 |
+
"step": 130
|
| 80 |
+
}
|
| 81 |
+
],
|
| 82 |
+
"logging_steps": 50,
|
| 83 |
+
"max_steps": 156,
|
| 84 |
+
"num_input_tokens_seen": 0,
|
| 85 |
+
"num_train_epochs": 6,
|
| 86 |
+
"save_steps": 500,
|
| 87 |
+
"stateful_callbacks": {
|
| 88 |
+
"TrainerControl": {
|
| 89 |
+
"args": {
|
| 90 |
+
"should_epoch_stop": false,
|
| 91 |
+
"should_evaluate": false,
|
| 92 |
+
"should_log": false,
|
| 93 |
+
"should_save": true,
|
| 94 |
+
"should_training_stop": false
|
| 95 |
+
},
|
| 96 |
+
"attributes": {}
|
| 97 |
+
}
|
| 98 |
+
},
|
| 99 |
+
"total_flos": 67940227829760.0,
|
| 100 |
+
"train_batch_size": 4,
|
| 101 |
+
"trial_name": null,
|
| 102 |
+
"trial_params": null
|
| 103 |
+
}
|
checkpoint-130/training_args.bin
ADDED
|
@@ -0,0 +1,3 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
version https://git-lfs.github.com/spec/v1
|
| 2 |
+
oid sha256:28773adb83572bc94ef9e073a42eb194223d823b5b140ca2b7c77bf0c3f76e9e
|
| 3 |
+
size 5201
|
checkpoint-156/config.json
ADDED
|
@@ -0,0 +1,46 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"add_cross_attention": false,
|
| 3 |
+
"architectures": [
|
| 4 |
+
"BertForTokenClassification"
|
| 5 |
+
],
|
| 6 |
+
"attention_probs_dropout_prob": 0.1,
|
| 7 |
+
"bos_token_id": null,
|
| 8 |
+
"classifier_dropout": null,
|
| 9 |
+
"dtype": "float32",
|
| 10 |
+
"eos_token_id": null,
|
| 11 |
+
"hidden_act": "gelu",
|
| 12 |
+
"hidden_dropout_prob": 0.1,
|
| 13 |
+
"hidden_size": 768,
|
| 14 |
+
"id2label": {
|
| 15 |
+
"0": "B-ADE",
|
| 16 |
+
"1": "B-AGE",
|
| 17 |
+
"2": "B-DRUG",
|
| 18 |
+
"3": "I-ADE",
|
| 19 |
+
"4": "I-AGE",
|
| 20 |
+
"5": "I-DRUG",
|
| 21 |
+
"6": "O"
|
| 22 |
+
},
|
| 23 |
+
"initializer_range": 0.02,
|
| 24 |
+
"intermediate_size": 3072,
|
| 25 |
+
"is_decoder": false,
|
| 26 |
+
"label2id": {
|
| 27 |
+
"B-ADE": 0,
|
| 28 |
+
"B-AGE": 1,
|
| 29 |
+
"B-DRUG": 2,
|
| 30 |
+
"I-ADE": 3,
|
| 31 |
+
"I-AGE": 4,
|
| 32 |
+
"I-DRUG": 5,
|
| 33 |
+
"O": 6
|
| 34 |
+
},
|
| 35 |
+
"layer_norm_eps": 1e-12,
|
| 36 |
+
"max_position_embeddings": 512,
|
| 37 |
+
"model_type": "bert",
|
| 38 |
+
"num_attention_heads": 12,
|
| 39 |
+
"num_hidden_layers": 12,
|
| 40 |
+
"pad_token_id": 0,
|
| 41 |
+
"tie_word_embeddings": true,
|
| 42 |
+
"transformers_version": "5.3.0",
|
| 43 |
+
"type_vocab_size": 2,
|
| 44 |
+
"use_cache": false,
|
| 45 |
+
"vocab_size": 28996
|
| 46 |
+
}
|
checkpoint-156/model.safetensors
ADDED
|
@@ -0,0 +1,3 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
version https://git-lfs.github.com/spec/v1
|
| 2 |
+
oid sha256:8118ef61650dcb39f2a759979b7d4de786801e0fda2c09b835e757c956d92f51
|
| 3 |
+
size 430923564
|
checkpoint-156/optimizer.pt
ADDED
|
@@ -0,0 +1,3 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
version https://git-lfs.github.com/spec/v1
|
| 2 |
+
oid sha256:50eec345bb88d986ff0e79b966613c5623a8099d77948c9eaaeb3e9b82624804
|
| 3 |
+
size 226911819
|
checkpoint-156/rng_state.pth
ADDED
|
@@ -0,0 +1,3 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
version https://git-lfs.github.com/spec/v1
|
| 2 |
+
oid sha256:56b9ffcfea7e20d15051e8936d76c0e26b05a1983ab529e562e8f944b7bd373f
|
| 3 |
+
size 14645
|
checkpoint-156/scheduler.pt
ADDED
|
@@ -0,0 +1,3 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
version https://git-lfs.github.com/spec/v1
|
| 2 |
+
oid sha256:a2b973829473ca01589916f767b33fa10f572dbffbc4cab770082eb09d9b6f17
|
| 3 |
+
size 1465
|
checkpoint-156/tokenizer.json
ADDED
|
The diff for this file is too large to render.
See raw diff
|
|
|
checkpoint-156/tokenizer_config.json
ADDED
|
@@ -0,0 +1,14 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"backend": "tokenizers",
|
| 3 |
+
"cls_token": "[CLS]",
|
| 4 |
+
"do_lower_case": true,
|
| 5 |
+
"is_local": false,
|
| 6 |
+
"mask_token": "[MASK]",
|
| 7 |
+
"model_max_length": 1000000000000000019884624838656,
|
| 8 |
+
"pad_token": "[PAD]",
|
| 9 |
+
"sep_token": "[SEP]",
|
| 10 |
+
"strip_accents": null,
|
| 11 |
+
"tokenize_chinese_chars": true,
|
| 12 |
+
"tokenizer_class": "BertTokenizer",
|
| 13 |
+
"unk_token": "[UNK]"
|
| 14 |
+
}
|
checkpoint-156/trainer_state.json
ADDED
|
@@ -0,0 +1,121 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"best_global_step": 130,
|
| 3 |
+
"best_metric": 0.42207130789756775,
|
| 4 |
+
"best_model_checkpoint": "/content/drive/MyDrive/ADEGuard/ner_biobert_final_v2/checkpoint-130",
|
| 5 |
+
"epoch": 6.0,
|
| 6 |
+
"eval_steps": 500,
|
| 7 |
+
"global_step": 156,
|
| 8 |
+
"is_hyper_param_search": false,
|
| 9 |
+
"is_local_process_zero": true,
|
| 10 |
+
"is_world_process_zero": true,
|
| 11 |
+
"log_history": [
|
| 12 |
+
{
|
| 13 |
+
"epoch": 1.0,
|
| 14 |
+
"eval_f1": 0.00783944810285356,
|
| 15 |
+
"eval_loss": 1.139850378036499,
|
| 16 |
+
"eval_precision": 0.0039488232506713,
|
| 17 |
+
"eval_recall": 0.5319148936170213,
|
| 18 |
+
"eval_runtime": 0.5321,
|
| 19 |
+
"eval_samples_per_second": 48.861,
|
| 20 |
+
"eval_steps_per_second": 7.517,
|
| 21 |
+
"step": 26
|
| 22 |
+
},
|
| 23 |
+
{
|
| 24 |
+
"epoch": 1.9230769230769231,
|
| 25 |
+
"grad_norm": 2.009291410446167,
|
| 26 |
+
"learning_rate": 2.057692307692308e-05,
|
| 27 |
+
"loss": 1.1273328399658202,
|
| 28 |
+
"step": 50
|
| 29 |
+
},
|
| 30 |
+
{
|
| 31 |
+
"epoch": 2.0,
|
| 32 |
+
"eval_f1": 0.009548896937767533,
|
| 33 |
+
"eval_loss": 0.6769160032272339,
|
| 34 |
+
"eval_precision": 0.004811680769868923,
|
| 35 |
+
"eval_recall": 0.6170212765957447,
|
| 36 |
+
"eval_runtime": 0.4451,
|
| 37 |
+
"eval_samples_per_second": 58.415,
|
| 38 |
+
"eval_steps_per_second": 8.987,
|
| 39 |
+
"step": 52
|
| 40 |
+
},
|
| 41 |
+
{
|
| 42 |
+
"epoch": 3.0,
|
| 43 |
+
"eval_f1": 0.011583871686344399,
|
| 44 |
+
"eval_loss": 0.5276753902435303,
|
| 45 |
+
"eval_precision": 0.00585321927059883,
|
| 46 |
+
"eval_recall": 0.5531914893617021,
|
| 47 |
+
"eval_runtime": 0.5507,
|
| 48 |
+
"eval_samples_per_second": 47.215,
|
| 49 |
+
"eval_steps_per_second": 7.264,
|
| 50 |
+
"step": 78
|
| 51 |
+
},
|
| 52 |
+
{
|
| 53 |
+
"epoch": 3.8461538461538463,
|
| 54 |
+
"grad_norm": 3.652482748031616,
|
| 55 |
+
"learning_rate": 1.0961538461538462e-05,
|
| 56 |
+
"loss": 0.4301648712158203,
|
| 57 |
+
"step": 100
|
| 58 |
+
},
|
| 59 |
+
{
|
| 60 |
+
"epoch": 4.0,
|
| 61 |
+
"eval_f1": 0.03429923122412773,
|
| 62 |
+
"eval_loss": 0.44260814785957336,
|
| 63 |
+
"eval_precision": 0.017639902676399026,
|
| 64 |
+
"eval_recall": 0.6170212765957447,
|
| 65 |
+
"eval_runtime": 0.4831,
|
| 66 |
+
"eval_samples_per_second": 53.818,
|
| 67 |
+
"eval_steps_per_second": 8.28,
|
| 68 |
+
"step": 104
|
| 69 |
+
},
|
| 70 |
+
{
|
| 71 |
+
"epoch": 5.0,
|
| 72 |
+
"eval_f1": 0.040502793296089384,
|
| 73 |
+
"eval_loss": 0.42207130789756775,
|
| 74 |
+
"eval_precision": 0.020938628158844765,
|
| 75 |
+
"eval_recall": 0.6170212765957447,
|
| 76 |
+
"eval_runtime": 0.4485,
|
| 77 |
+
"eval_samples_per_second": 57.967,
|
| 78 |
+
"eval_steps_per_second": 8.918,
|
| 79 |
+
"step": 130
|
| 80 |
+
},
|
| 81 |
+
{
|
| 82 |
+
"epoch": 5.769230769230769,
|
| 83 |
+
"grad_norm": 1.719118595123291,
|
| 84 |
+
"learning_rate": 1.3461538461538462e-06,
|
| 85 |
+
"loss": 0.18102121353149414,
|
| 86 |
+
"step": 150
|
| 87 |
+
},
|
| 88 |
+
{
|
| 89 |
+
"epoch": 6.0,
|
| 90 |
+
"eval_f1": 0.04627249357326478,
|
| 91 |
+
"eval_loss": 0.4319979250431061,
|
| 92 |
+
"eval_precision": 0.024107142857142858,
|
| 93 |
+
"eval_recall": 0.574468085106383,
|
| 94 |
+
"eval_runtime": 0.4511,
|
| 95 |
+
"eval_samples_per_second": 57.634,
|
| 96 |
+
"eval_steps_per_second": 8.867,
|
| 97 |
+
"step": 156
|
| 98 |
+
}
|
| 99 |
+
],
|
| 100 |
+
"logging_steps": 50,
|
| 101 |
+
"max_steps": 156,
|
| 102 |
+
"num_input_tokens_seen": 0,
|
| 103 |
+
"num_train_epochs": 6,
|
| 104 |
+
"save_steps": 500,
|
| 105 |
+
"stateful_callbacks": {
|
| 106 |
+
"TrainerControl": {
|
| 107 |
+
"args": {
|
| 108 |
+
"should_epoch_stop": false,
|
| 109 |
+
"should_evaluate": false,
|
| 110 |
+
"should_log": false,
|
| 111 |
+
"should_save": true,
|
| 112 |
+
"should_training_stop": true
|
| 113 |
+
},
|
| 114 |
+
"attributes": {}
|
| 115 |
+
}
|
| 116 |
+
},
|
| 117 |
+
"total_flos": 81528273395712.0,
|
| 118 |
+
"train_batch_size": 4,
|
| 119 |
+
"trial_name": null,
|
| 120 |
+
"trial_params": null
|
| 121 |
+
}
|
checkpoint-156/training_args.bin
ADDED
|
@@ -0,0 +1,3 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
version https://git-lfs.github.com/spec/v1
|
| 2 |
+
oid sha256:28773adb83572bc94ef9e073a42eb194223d823b5b140ca2b7c77bf0c3f76e9e
|
| 3 |
+
size 5201
|
checkpoint-26/model.safetensors
CHANGED
|
@@ -1,3 +1,3 @@
|
|
| 1 |
version https://git-lfs.github.com/spec/v1
|
| 2 |
-
oid sha256:
|
| 3 |
size 430923564
|
|
|
|
| 1 |
version https://git-lfs.github.com/spec/v1
|
| 2 |
+
oid sha256:cb4423e4ddb3f4c26593b0a62f46f10dd1cb278ccfa6e9d8bd79759e1f96b2d4
|
| 3 |
size 430923564
|
checkpoint-26/optimizer.pt
CHANGED
|
@@ -1,3 +1,3 @@
|
|
| 1 |
version https://git-lfs.github.com/spec/v1
|
| 2 |
-
oid sha256:
|
| 3 |
-
size
|
|
|
|
| 1 |
version https://git-lfs.github.com/spec/v1
|
| 2 |
+
oid sha256:52ddee98d8539dcf61c7551dffe234ddc6c2b750ca0dec5cf3d384974726d72d
|
| 3 |
+
size 226911819
|
checkpoint-26/rng_state.pth
CHANGED
|
@@ -1,3 +1,3 @@
|
|
| 1 |
version https://git-lfs.github.com/spec/v1
|
| 2 |
-
oid sha256:
|
| 3 |
size 14645
|
|
|
|
| 1 |
version https://git-lfs.github.com/spec/v1
|
| 2 |
+
oid sha256:5691beddb7ad8a4f355ae33432fde96e4488ff9d27a171ca1d3335528d0b4362
|
| 3 |
size 14645
|
checkpoint-26/scheduler.pt
CHANGED
|
@@ -1,3 +1,3 @@
|
|
| 1 |
version https://git-lfs.github.com/spec/v1
|
| 2 |
-
oid sha256:
|
| 3 |
size 1465
|
|
|
|
| 1 |
version https://git-lfs.github.com/spec/v1
|
| 2 |
+
oid sha256:683d1ed49f868c59cd7d1a26e5f958afa905456ce8fcd55424f0eacbba42da02
|
| 3 |
size 1465
|
checkpoint-26/tokenizer.json
CHANGED
|
@@ -2,13 +2,13 @@
|
|
| 2 |
"version": "1.0",
|
| 3 |
"truncation": {
|
| 4 |
"direction": "Right",
|
| 5 |
-
"max_length":
|
| 6 |
"strategy": "LongestFirst",
|
| 7 |
"stride": 0
|
| 8 |
},
|
| 9 |
"padding": {
|
| 10 |
"strategy": {
|
| 11 |
-
"Fixed":
|
| 12 |
},
|
| 13 |
"direction": "Right",
|
| 14 |
"pad_to_multiple_of": null,
|
|
|
|
| 2 |
"version": "1.0",
|
| 3 |
"truncation": {
|
| 4 |
"direction": "Right",
|
| 5 |
+
"max_length": 256,
|
| 6 |
"strategy": "LongestFirst",
|
| 7 |
"stride": 0
|
| 8 |
},
|
| 9 |
"padding": {
|
| 10 |
"strategy": {
|
| 11 |
+
"Fixed": 256
|
| 12 |
},
|
| 13 |
"direction": "Right",
|
| 14 |
"pad_to_multiple_of": null,
|
checkpoint-26/trainer_state.json
CHANGED
|
@@ -1,7 +1,7 @@
|
|
| 1 |
{
|
| 2 |
"best_global_step": 26,
|
| 3 |
-
"best_metric":
|
| 4 |
-
"best_model_checkpoint": "/content/drive/MyDrive/ADEGuard/
|
| 5 |
"epoch": 1.0,
|
| 6 |
"eval_steps": 500,
|
| 7 |
"global_step": 26,
|
|
@@ -11,20 +11,20 @@
|
|
| 11 |
"log_history": [
|
| 12 |
{
|
| 13 |
"epoch": 1.0,
|
| 14 |
-
"eval_f1": 0.
|
| 15 |
-
"eval_loss":
|
| 16 |
-
"eval_precision": 0.
|
| 17 |
-
"eval_recall": 0.
|
| 18 |
-
"eval_runtime": 0.
|
| 19 |
-
"eval_samples_per_second":
|
| 20 |
-
"eval_steps_per_second":
|
| 21 |
"step": 26
|
| 22 |
}
|
| 23 |
],
|
| 24 |
"logging_steps": 50,
|
| 25 |
-
"max_steps":
|
| 26 |
"num_input_tokens_seen": 0,
|
| 27 |
-
"num_train_epochs":
|
| 28 |
"save_steps": 500,
|
| 29 |
"stateful_callbacks": {
|
| 30 |
"TrainerControl": {
|
|
@@ -38,7 +38,7 @@
|
|
| 38 |
"attributes": {}
|
| 39 |
}
|
| 40 |
},
|
| 41 |
-
"total_flos":
|
| 42 |
"train_batch_size": 4,
|
| 43 |
"trial_name": null,
|
| 44 |
"trial_params": null
|
|
|
|
| 1 |
{
|
| 2 |
"best_global_step": 26,
|
| 3 |
+
"best_metric": 1.139850378036499,
|
| 4 |
+
"best_model_checkpoint": "/content/drive/MyDrive/ADEGuard/ner_biobert_final_v2/checkpoint-26",
|
| 5 |
"epoch": 1.0,
|
| 6 |
"eval_steps": 500,
|
| 7 |
"global_step": 26,
|
|
|
|
| 11 |
"log_history": [
|
| 12 |
{
|
| 13 |
"epoch": 1.0,
|
| 14 |
+
"eval_f1": 0.00783944810285356,
|
| 15 |
+
"eval_loss": 1.139850378036499,
|
| 16 |
+
"eval_precision": 0.0039488232506713,
|
| 17 |
+
"eval_recall": 0.5319148936170213,
|
| 18 |
+
"eval_runtime": 0.5321,
|
| 19 |
+
"eval_samples_per_second": 48.861,
|
| 20 |
+
"eval_steps_per_second": 7.517,
|
| 21 |
"step": 26
|
| 22 |
}
|
| 23 |
],
|
| 24 |
"logging_steps": 50,
|
| 25 |
+
"max_steps": 156,
|
| 26 |
"num_input_tokens_seen": 0,
|
| 27 |
+
"num_train_epochs": 6,
|
| 28 |
"save_steps": 500,
|
| 29 |
"stateful_callbacks": {
|
| 30 |
"TrainerControl": {
|
|
|
|
| 38 |
"attributes": {}
|
| 39 |
}
|
| 40 |
},
|
| 41 |
+
"total_flos": 13588045565952.0,
|
| 42 |
"train_batch_size": 4,
|
| 43 |
"trial_name": null,
|
| 44 |
"trial_params": null
|
checkpoint-26/training_args.bin
CHANGED
|
@@ -1,3 +1,3 @@
|
|
| 1 |
version https://git-lfs.github.com/spec/v1
|
| 2 |
-
oid sha256:
|
| 3 |
size 5201
|
|
|
|
| 1 |
version https://git-lfs.github.com/spec/v1
|
| 2 |
+
oid sha256:28773adb83572bc94ef9e073a42eb194223d823b5b140ca2b7c77bf0c3f76e9e
|
| 3 |
size 5201
|
checkpoint-52/model.safetensors
CHANGED
|
@@ -1,3 +1,3 @@
|
|
| 1 |
version https://git-lfs.github.com/spec/v1
|
| 2 |
-
oid sha256:
|
| 3 |
size 430923564
|
|
|
|
| 1 |
version https://git-lfs.github.com/spec/v1
|
| 2 |
+
oid sha256:7480b024fe7766fab782a3cba7cc8bdb38651840f3cb50826fba71ec204866cc
|
| 3 |
size 430923564
|
checkpoint-52/optimizer.pt
CHANGED
|
@@ -1,3 +1,3 @@
|
|
| 1 |
version https://git-lfs.github.com/spec/v1
|
| 2 |
-
oid sha256:
|
| 3 |
-
size
|
|
|
|
| 1 |
version https://git-lfs.github.com/spec/v1
|
| 2 |
+
oid sha256:7f989e375de6084bc9c7699d0246c4295c0bf24f72fcc0eaf11762b1193179cf
|
| 3 |
+
size 226911819
|
checkpoint-52/rng_state.pth
CHANGED
|
@@ -1,3 +1,3 @@
|
|
| 1 |
version https://git-lfs.github.com/spec/v1
|
| 2 |
-
oid sha256:
|
| 3 |
size 14645
|
|
|
|
| 1 |
version https://git-lfs.github.com/spec/v1
|
| 2 |
+
oid sha256:21889862d27281783a0fee3f059c1c137f41d59d3720580f58ad5e30dfafb855
|
| 3 |
size 14645
|
checkpoint-52/scheduler.pt
CHANGED
|
@@ -1,3 +1,3 @@
|
|
| 1 |
version https://git-lfs.github.com/spec/v1
|
| 2 |
-
oid sha256:
|
| 3 |
size 1465
|
|
|
|
| 1 |
version https://git-lfs.github.com/spec/v1
|
| 2 |
+
oid sha256:1c8949a640b45a3a8cd2569d356a198f561c9b743be4c42b29713a6275a9af3c
|
| 3 |
size 1465
|
checkpoint-52/tokenizer.json
CHANGED
|
@@ -2,13 +2,13 @@
|
|
| 2 |
"version": "1.0",
|
| 3 |
"truncation": {
|
| 4 |
"direction": "Right",
|
| 5 |
-
"max_length":
|
| 6 |
"strategy": "LongestFirst",
|
| 7 |
"stride": 0
|
| 8 |
},
|
| 9 |
"padding": {
|
| 10 |
"strategy": {
|
| 11 |
-
"Fixed":
|
| 12 |
},
|
| 13 |
"direction": "Right",
|
| 14 |
"pad_to_multiple_of": null,
|
|
|
|
| 2 |
"version": "1.0",
|
| 3 |
"truncation": {
|
| 4 |
"direction": "Right",
|
| 5 |
+
"max_length": 256,
|
| 6 |
"strategy": "LongestFirst",
|
| 7 |
"stride": 0
|
| 8 |
},
|
| 9 |
"padding": {
|
| 10 |
"strategy": {
|
| 11 |
+
"Fixed": 256
|
| 12 |
},
|
| 13 |
"direction": "Right",
|
| 14 |
"pad_to_multiple_of": null,
|
checkpoint-52/trainer_state.json
CHANGED
|
@@ -1,7 +1,7 @@
|
|
| 1 |
{
|
| 2 |
"best_global_step": 52,
|
| 3 |
-
"best_metric": 0.
|
| 4 |
-
"best_model_checkpoint": "/content/drive/MyDrive/ADEGuard/
|
| 5 |
"epoch": 2.0,
|
| 6 |
"eval_steps": 500,
|
| 7 |
"global_step": 52,
|
|
@@ -11,38 +11,38 @@
|
|
| 11 |
"log_history": [
|
| 12 |
{
|
| 13 |
"epoch": 1.0,
|
| 14 |
-
"eval_f1": 0.
|
| 15 |
-
"eval_loss":
|
| 16 |
-
"eval_precision": 0.
|
| 17 |
-
"eval_recall": 0.
|
| 18 |
-
"eval_runtime": 0.
|
| 19 |
-
"eval_samples_per_second":
|
| 20 |
-
"eval_steps_per_second":
|
| 21 |
"step": 26
|
| 22 |
},
|
| 23 |
{
|
| 24 |
"epoch": 1.9230769230769231,
|
| 25 |
-
"grad_norm":
|
| 26 |
-
"learning_rate":
|
| 27 |
-
"loss":
|
| 28 |
"step": 50
|
| 29 |
},
|
| 30 |
{
|
| 31 |
"epoch": 2.0,
|
| 32 |
-
"eval_f1": 0.
|
| 33 |
-
"eval_loss": 0.
|
| 34 |
-
"eval_precision":
|
| 35 |
-
"eval_recall": 0.
|
| 36 |
-
"eval_runtime": 0.
|
| 37 |
-
"eval_samples_per_second":
|
| 38 |
-
"eval_steps_per_second":
|
| 39 |
"step": 52
|
| 40 |
}
|
| 41 |
],
|
| 42 |
"logging_steps": 50,
|
| 43 |
-
"max_steps":
|
| 44 |
"num_input_tokens_seen": 0,
|
| 45 |
-
"num_train_epochs":
|
| 46 |
"save_steps": 500,
|
| 47 |
"stateful_callbacks": {
|
| 48 |
"TrainerControl": {
|
|
@@ -56,7 +56,7 @@
|
|
| 56 |
"attributes": {}
|
| 57 |
}
|
| 58 |
},
|
| 59 |
-
"total_flos":
|
| 60 |
"train_batch_size": 4,
|
| 61 |
"trial_name": null,
|
| 62 |
"trial_params": null
|
|
|
|
| 1 |
{
|
| 2 |
"best_global_step": 52,
|
| 3 |
+
"best_metric": 0.6769160032272339,
|
| 4 |
+
"best_model_checkpoint": "/content/drive/MyDrive/ADEGuard/ner_biobert_final_v2/checkpoint-52",
|
| 5 |
"epoch": 2.0,
|
| 6 |
"eval_steps": 500,
|
| 7 |
"global_step": 52,
|
|
|
|
| 11 |
"log_history": [
|
| 12 |
{
|
| 13 |
"epoch": 1.0,
|
| 14 |
+
"eval_f1": 0.00783944810285356,
|
| 15 |
+
"eval_loss": 1.139850378036499,
|
| 16 |
+
"eval_precision": 0.0039488232506713,
|
| 17 |
+
"eval_recall": 0.5319148936170213,
|
| 18 |
+
"eval_runtime": 0.5321,
|
| 19 |
+
"eval_samples_per_second": 48.861,
|
| 20 |
+
"eval_steps_per_second": 7.517,
|
| 21 |
"step": 26
|
| 22 |
},
|
| 23 |
{
|
| 24 |
"epoch": 1.9230769230769231,
|
| 25 |
+
"grad_norm": 2.009291410446167,
|
| 26 |
+
"learning_rate": 2.057692307692308e-05,
|
| 27 |
+
"loss": 1.1273328399658202,
|
| 28 |
"step": 50
|
| 29 |
},
|
| 30 |
{
|
| 31 |
"epoch": 2.0,
|
| 32 |
+
"eval_f1": 0.009548896937767533,
|
| 33 |
+
"eval_loss": 0.6769160032272339,
|
| 34 |
+
"eval_precision": 0.004811680769868923,
|
| 35 |
+
"eval_recall": 0.6170212765957447,
|
| 36 |
+
"eval_runtime": 0.4451,
|
| 37 |
+
"eval_samples_per_second": 58.415,
|
| 38 |
+
"eval_steps_per_second": 8.987,
|
| 39 |
"step": 52
|
| 40 |
}
|
| 41 |
],
|
| 42 |
"logging_steps": 50,
|
| 43 |
+
"max_steps": 156,
|
| 44 |
"num_input_tokens_seen": 0,
|
| 45 |
+
"num_train_epochs": 6,
|
| 46 |
"save_steps": 500,
|
| 47 |
"stateful_callbacks": {
|
| 48 |
"TrainerControl": {
|
|
|
|
| 56 |
"attributes": {}
|
| 57 |
}
|
| 58 |
},
|
| 59 |
+
"total_flos": 27176091131904.0,
|
| 60 |
"train_batch_size": 4,
|
| 61 |
"trial_name": null,
|
| 62 |
"trial_params": null
|
checkpoint-52/training_args.bin
CHANGED
|
@@ -1,3 +1,3 @@
|
|
| 1 |
version https://git-lfs.github.com/spec/v1
|
| 2 |
-
oid sha256:
|
| 3 |
size 5201
|
|
|
|
| 1 |
version https://git-lfs.github.com/spec/v1
|
| 2 |
+
oid sha256:28773adb83572bc94ef9e073a42eb194223d823b5b140ca2b7c77bf0c3f76e9e
|
| 3 |
size 5201
|
checkpoint-78/model.safetensors
CHANGED
|
@@ -1,3 +1,3 @@
|
|
| 1 |
version https://git-lfs.github.com/spec/v1
|
| 2 |
-
oid sha256:
|
| 3 |
size 430923564
|
|
|
|
| 1 |
version https://git-lfs.github.com/spec/v1
|
| 2 |
+
oid sha256:3f9533048d9749d8b17edc37db6af1286e31b0d00052508ec627fcde7989bb2a
|
| 3 |
size 430923564
|
checkpoint-78/optimizer.pt
CHANGED
|
@@ -1,3 +1,3 @@
|
|
| 1 |
version https://git-lfs.github.com/spec/v1
|
| 2 |
-
oid sha256:
|
| 3 |
-
size
|
|
|
|
| 1 |
version https://git-lfs.github.com/spec/v1
|
| 2 |
+
oid sha256:760051714cd4e374b1407888a2c29a3cb5992e21d894bae2d20bf62290a78f1a
|
| 3 |
+
size 226911819
|
checkpoint-78/rng_state.pth
CHANGED
|
@@ -1,3 +1,3 @@
|
|
| 1 |
version https://git-lfs.github.com/spec/v1
|
| 2 |
-
oid sha256:
|
| 3 |
size 14645
|
|
|
|
| 1 |
version https://git-lfs.github.com/spec/v1
|
| 2 |
+
oid sha256:96fc2fc16bde34718774552cb32c5672a6c84857f9839f9a70a7286c4f014f79
|
| 3 |
size 14645
|
checkpoint-78/scheduler.pt
CHANGED
|
@@ -1,3 +1,3 @@
|
|
| 1 |
version https://git-lfs.github.com/spec/v1
|
| 2 |
-
oid sha256:
|
| 3 |
size 1465
|
|
|
|
| 1 |
version https://git-lfs.github.com/spec/v1
|
| 2 |
+
oid sha256:eca5ca9fe276b1820e6b746310ee88fa238e1e01be76fba2edc08e699cf943f9
|
| 3 |
size 1465
|
checkpoint-78/tokenizer.json
CHANGED
|
@@ -2,13 +2,13 @@
|
|
| 2 |
"version": "1.0",
|
| 3 |
"truncation": {
|
| 4 |
"direction": "Right",
|
| 5 |
-
"max_length":
|
| 6 |
"strategy": "LongestFirst",
|
| 7 |
"stride": 0
|
| 8 |
},
|
| 9 |
"padding": {
|
| 10 |
"strategy": {
|
| 11 |
-
"Fixed":
|
| 12 |
},
|
| 13 |
"direction": "Right",
|
| 14 |
"pad_to_multiple_of": null,
|
|
|
|
| 2 |
"version": "1.0",
|
| 3 |
"truncation": {
|
| 4 |
"direction": "Right",
|
| 5 |
+
"max_length": 256,
|
| 6 |
"strategy": "LongestFirst",
|
| 7 |
"stride": 0
|
| 8 |
},
|
| 9 |
"padding": {
|
| 10 |
"strategy": {
|
| 11 |
+
"Fixed": 256
|
| 12 |
},
|
| 13 |
"direction": "Right",
|
| 14 |
"pad_to_multiple_of": null,
|
checkpoint-78/trainer_state.json
CHANGED
|
@@ -1,7 +1,7 @@
|
|
| 1 |
{
|
| 2 |
"best_global_step": 78,
|
| 3 |
-
"best_metric": 0.
|
| 4 |
-
"best_model_checkpoint": "/content/drive/MyDrive/ADEGuard/
|
| 5 |
"epoch": 3.0,
|
| 6 |
"eval_steps": 500,
|
| 7 |
"global_step": 78,
|
|
@@ -11,49 +11,49 @@
|
|
| 11 |
"log_history": [
|
| 12 |
{
|
| 13 |
"epoch": 1.0,
|
| 14 |
-
"eval_f1": 0.
|
| 15 |
-
"eval_loss":
|
| 16 |
-
"eval_precision": 0.
|
| 17 |
-
"eval_recall": 0.
|
| 18 |
-
"eval_runtime": 0.
|
| 19 |
-
"eval_samples_per_second":
|
| 20 |
-
"eval_steps_per_second":
|
| 21 |
"step": 26
|
| 22 |
},
|
| 23 |
{
|
| 24 |
"epoch": 1.9230769230769231,
|
| 25 |
-
"grad_norm":
|
| 26 |
-
"learning_rate":
|
| 27 |
-
"loss":
|
| 28 |
"step": 50
|
| 29 |
},
|
| 30 |
{
|
| 31 |
"epoch": 2.0,
|
| 32 |
-
"eval_f1": 0.
|
| 33 |
-
"eval_loss": 0.
|
| 34 |
-
"eval_precision":
|
| 35 |
-
"eval_recall": 0.
|
| 36 |
-
"eval_runtime": 0.
|
| 37 |
-
"eval_samples_per_second":
|
| 38 |
-
"eval_steps_per_second":
|
| 39 |
"step": 52
|
| 40 |
},
|
| 41 |
{
|
| 42 |
"epoch": 3.0,
|
| 43 |
-
"eval_f1": 0.
|
| 44 |
-
"eval_loss": 0.
|
| 45 |
-
"eval_precision":
|
| 46 |
-
"eval_recall": 0.
|
| 47 |
-
"eval_runtime": 0.
|
| 48 |
-
"eval_samples_per_second":
|
| 49 |
-
"eval_steps_per_second":
|
| 50 |
"step": 78
|
| 51 |
}
|
| 52 |
],
|
| 53 |
"logging_steps": 50,
|
| 54 |
-
"max_steps":
|
| 55 |
"num_input_tokens_seen": 0,
|
| 56 |
-
"num_train_epochs":
|
| 57 |
"save_steps": 500,
|
| 58 |
"stateful_callbacks": {
|
| 59 |
"TrainerControl": {
|
|
@@ -62,12 +62,12 @@
|
|
| 62 |
"should_evaluate": false,
|
| 63 |
"should_log": false,
|
| 64 |
"should_save": true,
|
| 65 |
-
"should_training_stop":
|
| 66 |
},
|
| 67 |
"attributes": {}
|
| 68 |
}
|
| 69 |
},
|
| 70 |
-
"total_flos":
|
| 71 |
"train_batch_size": 4,
|
| 72 |
"trial_name": null,
|
| 73 |
"trial_params": null
|
|
|
|
| 1 |
{
|
| 2 |
"best_global_step": 78,
|
| 3 |
+
"best_metric": 0.5276753902435303,
|
| 4 |
+
"best_model_checkpoint": "/content/drive/MyDrive/ADEGuard/ner_biobert_final_v2/checkpoint-78",
|
| 5 |
"epoch": 3.0,
|
| 6 |
"eval_steps": 500,
|
| 7 |
"global_step": 78,
|
|
|
|
| 11 |
"log_history": [
|
| 12 |
{
|
| 13 |
"epoch": 1.0,
|
| 14 |
+
"eval_f1": 0.00783944810285356,
|
| 15 |
+
"eval_loss": 1.139850378036499,
|
| 16 |
+
"eval_precision": 0.0039488232506713,
|
| 17 |
+
"eval_recall": 0.5319148936170213,
|
| 18 |
+
"eval_runtime": 0.5321,
|
| 19 |
+
"eval_samples_per_second": 48.861,
|
| 20 |
+
"eval_steps_per_second": 7.517,
|
| 21 |
"step": 26
|
| 22 |
},
|
| 23 |
{
|
| 24 |
"epoch": 1.9230769230769231,
|
| 25 |
+
"grad_norm": 2.009291410446167,
|
| 26 |
+
"learning_rate": 2.057692307692308e-05,
|
| 27 |
+
"loss": 1.1273328399658202,
|
| 28 |
"step": 50
|
| 29 |
},
|
| 30 |
{
|
| 31 |
"epoch": 2.0,
|
| 32 |
+
"eval_f1": 0.009548896937767533,
|
| 33 |
+
"eval_loss": 0.6769160032272339,
|
| 34 |
+
"eval_precision": 0.004811680769868923,
|
| 35 |
+
"eval_recall": 0.6170212765957447,
|
| 36 |
+
"eval_runtime": 0.4451,
|
| 37 |
+
"eval_samples_per_second": 58.415,
|
| 38 |
+
"eval_steps_per_second": 8.987,
|
| 39 |
"step": 52
|
| 40 |
},
|
| 41 |
{
|
| 42 |
"epoch": 3.0,
|
| 43 |
+
"eval_f1": 0.011583871686344399,
|
| 44 |
+
"eval_loss": 0.5276753902435303,
|
| 45 |
+
"eval_precision": 0.00585321927059883,
|
| 46 |
+
"eval_recall": 0.5531914893617021,
|
| 47 |
+
"eval_runtime": 0.5507,
|
| 48 |
+
"eval_samples_per_second": 47.215,
|
| 49 |
+
"eval_steps_per_second": 7.264,
|
| 50 |
"step": 78
|
| 51 |
}
|
| 52 |
],
|
| 53 |
"logging_steps": 50,
|
| 54 |
+
"max_steps": 156,
|
| 55 |
"num_input_tokens_seen": 0,
|
| 56 |
+
"num_train_epochs": 6,
|
| 57 |
"save_steps": 500,
|
| 58 |
"stateful_callbacks": {
|
| 59 |
"TrainerControl": {
|
|
|
|
| 62 |
"should_evaluate": false,
|
| 63 |
"should_log": false,
|
| 64 |
"should_save": true,
|
| 65 |
+
"should_training_stop": false
|
| 66 |
},
|
| 67 |
"attributes": {}
|
| 68 |
}
|
| 69 |
},
|
| 70 |
+
"total_flos": 40764136697856.0,
|
| 71 |
"train_batch_size": 4,
|
| 72 |
"trial_name": null,
|
| 73 |
"trial_params": null
|
checkpoint-78/training_args.bin
CHANGED
|
@@ -1,3 +1,3 @@
|
|
| 1 |
version https://git-lfs.github.com/spec/v1
|
| 2 |
-
oid sha256:
|
| 3 |
size 5201
|
|
|
|
| 1 |
version https://git-lfs.github.com/spec/v1
|
| 2 |
+
oid sha256:28773adb83572bc94ef9e073a42eb194223d823b5b140ca2b7c77bf0c3f76e9e
|
| 3 |
size 5201
|
model.safetensors
CHANGED
|
@@ -1,3 +1,3 @@
|
|
| 1 |
version https://git-lfs.github.com/spec/v1
|
| 2 |
-
oid sha256:
|
| 3 |
size 430923564
|
|
|
|
| 1 |
version https://git-lfs.github.com/spec/v1
|
| 2 |
+
oid sha256:3134d4e9b31847c551b1b2be4101851ac51d0b57688993699ea34cdf1f6f5560
|
| 3 |
size 430923564
|