Add app.py
Browse files- manuscript_mimic/app.py +236 -0
manuscript_mimic/app.py
ADDED
|
@@ -0,0 +1,236 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
"""
|
| 2 |
+
app.py β Manuscript-Mimic Gradio UI
|
| 3 |
+
|
| 4 |
+
Upload a reference PDF (or paste reference text) and paste your AI-generated
|
| 5 |
+
draft. The agent rewrites the draft to statistically match the reference's
|
| 6 |
+
academic writing style.
|
| 7 |
+
"""
|
| 8 |
+
|
| 9 |
+
from __future__ import annotations
|
| 10 |
+
|
| 11 |
+
import json
|
| 12 |
+
import os
|
| 13 |
+
import traceback
|
| 14 |
+
|
| 15 |
+
import gradio as gr
|
| 16 |
+
|
| 17 |
+
from style_extractor import extract_style_metrics, StyleExtractorTool
|
| 18 |
+
from rewrite_agent import run_mimic, DEMO_REFERENCE, DEMO_TARGET
|
| 19 |
+
|
| 20 |
+
|
| 21 |
+
# ββ PDF extraction helper βββββββββββββββββββββββββββββββββββββββββββββββββββββββ
|
| 22 |
+
|
| 23 |
+
def extract_pdf_text(pdf_path: str) -> str:
|
| 24 |
+
"""Best-effort plain-text extraction from a PDF file."""
|
| 25 |
+
try:
|
| 26 |
+
import pymupdf # PyMuPDF (fitz)
|
| 27 |
+
doc = pymupdf.open(pdf_path)
|
| 28 |
+
pages = [page.get_text() for page in doc]
|
| 29 |
+
doc.close()
|
| 30 |
+
return "\n\n".join(pages).strip()
|
| 31 |
+
except ImportError:
|
| 32 |
+
pass
|
| 33 |
+
|
| 34 |
+
try:
|
| 35 |
+
from pypdf import PdfReader
|
| 36 |
+
reader = PdfReader(pdf_path)
|
| 37 |
+
pages = [p.extract_text() or "" for p in reader.pages]
|
| 38 |
+
return "\n\n".join(pages).strip()
|
| 39 |
+
except ImportError:
|
| 40 |
+
pass
|
| 41 |
+
|
| 42 |
+
return (
|
| 43 |
+
"β οΈ Could not extract PDF text. Install pymupdf or pypdf:\n"
|
| 44 |
+
" pip install pymupdf # OR pip install pypdf"
|
| 45 |
+
)
|
| 46 |
+
|
| 47 |
+
|
| 48 |
+
# ββ Metric formatting ββββββββββββββββββββββββββββββββββββββββββββββββββββββββββ
|
| 49 |
+
|
| 50 |
+
def fmt_metrics(m: dict) -> str:
|
| 51 |
+
"""Pretty-print metrics dict."""
|
| 52 |
+
lines = [
|
| 53 |
+
f" Sentences : {m['num_sentences']}",
|
| 54 |
+
f" Total words : {m['total_words']}",
|
| 55 |
+
f" Avg sentence length : {m['avg_sentence_length']:.2f}",
|
| 56 |
+
f" Sentence length Ο : {m['sentence_length_variance']:.4f}",
|
| 57 |
+
f" Hedging density : {m['hedging_density']:.4f} (hedge words / sentence)",
|
| 58 |
+
f" Passive voice density: {m['passive_voice_density']:.4f} (passives / sentence)",
|
| 59 |
+
]
|
| 60 |
+
return "\n".join(lines)
|
| 61 |
+
|
| 62 |
+
|
| 63 |
+
def metric_delta(ref: dict, other: dict) -> str:
|
| 64 |
+
"""Show deltas between two metric dicts."""
|
| 65 |
+
keys = ["sentence_length_variance", "hedging_density", "passive_voice_density"]
|
| 66 |
+
lines = []
|
| 67 |
+
for k in keys:
|
| 68 |
+
r, o = ref[k], other[k]
|
| 69 |
+
if r == 0:
|
| 70 |
+
pct = "N/A" if o == 0 else "+β"
|
| 71 |
+
else:
|
| 72 |
+
pct = f"{((o - r) / r) * 100:+.1f}%"
|
| 73 |
+
lines.append(f" {k:>28s}: ref={r:.4f} now={o:.4f} Ξ={pct}")
|
| 74 |
+
return "\n".join(lines)
|
| 75 |
+
|
| 76 |
+
|
| 77 |
+
# ββ Main Gradio callback βββββββββββββββββββββββββββββββββββββββββββββββββββββββ
|
| 78 |
+
|
| 79 |
+
def process(
|
| 80 |
+
pdf_file,
|
| 81 |
+
reference_text: str,
|
| 82 |
+
target_text: str,
|
| 83 |
+
model_id: str,
|
| 84 |
+
max_steps: int,
|
| 85 |
+
):
|
| 86 |
+
"""
|
| 87 |
+
Main pipeline:
|
| 88 |
+
1. Extract reference text (from PDF or textbox)
|
| 89 |
+
2. Compute metrics for both texts
|
| 90 |
+
3. Run the agent to rewrite
|
| 91 |
+
4. Compute metrics on result
|
| 92 |
+
5. Return everything
|
| 93 |
+
"""
|
| 94 |
+
# ββ 1. Reference text ββββββββββββββββββββββββββββββββββββββββββββββββββββ
|
| 95 |
+
if pdf_file is not None:
|
| 96 |
+
reference_text = extract_pdf_text(pdf_file.name if hasattr(pdf_file, "name") else str(pdf_file))
|
| 97 |
+
if reference_text.startswith("β οΈ"):
|
| 98 |
+
return reference_text, "", "", "", ""
|
| 99 |
+
|
| 100 |
+
if not reference_text or not reference_text.strip():
|
| 101 |
+
return "β Please provide reference text (paste or upload PDF).", "", "", "", ""
|
| 102 |
+
if not target_text or not target_text.strip():
|
| 103 |
+
return "β Please provide a target draft to rewrite.", "", "", "", ""
|
| 104 |
+
|
| 105 |
+
# ββ 2. Compute pre-rewrite metrics βββββββββββββββββββββββββββββββββββββββ
|
| 106 |
+
ref_metrics = extract_style_metrics(reference_text)
|
| 107 |
+
tgt_metrics = extract_style_metrics(target_text)
|
| 108 |
+
|
| 109 |
+
ref_report = "π REFERENCE TEXT METRICS\n" + fmt_metrics(ref_metrics)
|
| 110 |
+
tgt_report = "π TARGET DRAFT METRICS (before)\n" + fmt_metrics(tgt_metrics)
|
| 111 |
+
pre_delta = "π DELTA (target vs reference)\n" + metric_delta(ref_metrics, tgt_metrics)
|
| 112 |
+
|
| 113 |
+
# ββ 3. Run the agent βββββββββββββββββββββββββββββββββββββββββββββββββββββ
|
| 114 |
+
try:
|
| 115 |
+
rewritten = run_mimic(
|
| 116 |
+
reference_text=reference_text,
|
| 117 |
+
target_text=target_text,
|
| 118 |
+
model_id=model_id,
|
| 119 |
+
max_steps=int(max_steps),
|
| 120 |
+
verbosity=1,
|
| 121 |
+
)
|
| 122 |
+
except Exception as e:
|
| 123 |
+
tb = traceback.format_exc()
|
| 124 |
+
return ref_report, tgt_report, pre_delta, f"β Agent error:\n{e}\n\n{tb}", ""
|
| 125 |
+
|
| 126 |
+
# ββ 4. Post-rewrite metrics ββββββββββββββββββββββββββββββββββββββββββββββ
|
| 127 |
+
new_metrics = extract_style_metrics(rewritten)
|
| 128 |
+
post_report = (
|
| 129 |
+
"β
REWRITTEN TEXT METRICS\n"
|
| 130 |
+
+ fmt_metrics(new_metrics)
|
| 131 |
+
+ "\n\nπ DELTA (rewritten vs reference)\n"
|
| 132 |
+
+ metric_delta(ref_metrics, new_metrics)
|
| 133 |
+
)
|
| 134 |
+
|
| 135 |
+
return ref_report, tgt_report + "\n\n" + pre_delta, rewritten, post_report, reference_text
|
| 136 |
+
|
| 137 |
+
|
| 138 |
+
# ββ Gradio UI βββββββββββββββββββββββββββββββββββββββββββββββββββββββββββββββββββ
|
| 139 |
+
|
| 140 |
+
DESCRIPTION = """\
|
| 141 |
+
# ποΈ Manuscript-Mimic
|
| 142 |
+
|
| 143 |
+
**AI Style Transfer for Scientific Writing**
|
| 144 |
+
|
| 145 |
+
Upload a pre-2022 human-authored reference manuscript (PDF or pasted text) and
|
| 146 |
+
an AI-generated draft. The agent rewrites your draft to statistically match
|
| 147 |
+
the reference's writing style β sentence complexity, hedging language, and
|
| 148 |
+
passive voice patterns.
|
| 149 |
+
|
| 150 |
+
**Three metrics are matched:**
|
| 151 |
+
- **Sentence Length Variance** β Ο of word counts per sentence
|
| 152 |
+
- **Hedging Density** β frequency of hedge words (*suggest, may, putative, indicate*β¦)
|
| 153 |
+
- **Passive Voice Density** β frequency of academic passives (*was performed, were analyzed*β¦)
|
| 154 |
+
"""
|
| 155 |
+
|
| 156 |
+
with gr.Blocks(
|
| 157 |
+
title="Manuscript-Mimic",
|
| 158 |
+
) as demo:
|
| 159 |
+
|
| 160 |
+
gr.Markdown(DESCRIPTION)
|
| 161 |
+
|
| 162 |
+
with gr.Row():
|
| 163 |
+
with gr.Column(scale=1):
|
| 164 |
+
gr.Markdown("### π Reference Style")
|
| 165 |
+
pdf_input = gr.File(
|
| 166 |
+
label="Upload Reference PDF (optional)",
|
| 167 |
+
file_types=[".pdf"],
|
| 168 |
+
type="filepath",
|
| 169 |
+
)
|
| 170 |
+
ref_textbox = gr.Textbox(
|
| 171 |
+
label="Or paste Reference Text",
|
| 172 |
+
placeholder="Paste a paragraph from a pre-2022 manuscriptβ¦",
|
| 173 |
+
lines=10,
|
| 174 |
+
)
|
| 175 |
+
|
| 176 |
+
with gr.Column(scale=1):
|
| 177 |
+
gr.Markdown("### π Target Draft")
|
| 178 |
+
target_textbox = gr.Textbox(
|
| 179 |
+
label="Paste your AI-generated draft",
|
| 180 |
+
placeholder="Paste the text you want rewrittenβ¦",
|
| 181 |
+
lines=10,
|
| 182 |
+
)
|
| 183 |
+
|
| 184 |
+
with gr.Row():
|
| 185 |
+
model_dropdown = gr.Dropdown(
|
| 186 |
+
label="LLM Model",
|
| 187 |
+
choices=[
|
| 188 |
+
"Qwen/Qwen2.5-Coder-32B-Instruct",
|
| 189 |
+
"meta-llama/Llama-3.3-70B-Instruct",
|
| 190 |
+
"mistralai/Mixtral-8x7B-Instruct-v0.1",
|
| 191 |
+
],
|
| 192 |
+
value="Qwen/Qwen2.5-Coder-32B-Instruct",
|
| 193 |
+
)
|
| 194 |
+
steps_slider = gr.Slider(
|
| 195 |
+
label="Max Agent Steps",
|
| 196 |
+
minimum=4,
|
| 197 |
+
maximum=20,
|
| 198 |
+
step=1,
|
| 199 |
+
value=12,
|
| 200 |
+
)
|
| 201 |
+
|
| 202 |
+
run_btn = gr.Button("π Rewrite to Match Style", variant="primary", size="lg")
|
| 203 |
+
|
| 204 |
+
# Demo loader
|
| 205 |
+
demo_btn = gr.Button("π Load Demo Texts", variant="secondary")
|
| 206 |
+
|
| 207 |
+
with gr.Row():
|
| 208 |
+
ref_metrics_box = gr.Textbox(label="Reference Metrics", lines=8, interactive=False)
|
| 209 |
+
tgt_metrics_box = gr.Textbox(label="Target Metrics & Delta", lines=10, interactive=False)
|
| 210 |
+
|
| 211 |
+
gr.Markdown("### β
Rewritten Text")
|
| 212 |
+
rewritten_box = gr.Textbox(label="Rewritten Draft", lines=12, interactive=False)
|
| 213 |
+
|
| 214 |
+
post_metrics_box = gr.Textbox(label="Post-Rewrite Metrics & Delta", lines=10, interactive=False)
|
| 215 |
+
|
| 216 |
+
extracted_ref_box = gr.Textbox(label="Extracted Reference (from PDF)", lines=6, visible=False)
|
| 217 |
+
|
| 218 |
+
# ββ Event wiring ββββββββββββββββββββββββββββββββββββββββββββββββββββββββ
|
| 219 |
+
run_btn.click(
|
| 220 |
+
fn=process,
|
| 221 |
+
inputs=[pdf_input, ref_textbox, target_textbox, model_dropdown, steps_slider],
|
| 222 |
+
outputs=[ref_metrics_box, tgt_metrics_box, rewritten_box, post_metrics_box, extracted_ref_box],
|
| 223 |
+
)
|
| 224 |
+
|
| 225 |
+
def load_demo():
|
| 226 |
+
return DEMO_REFERENCE, DEMO_TARGET
|
| 227 |
+
|
| 228 |
+
demo_btn.click(
|
| 229 |
+
fn=load_demo,
|
| 230 |
+
inputs=[],
|
| 231 |
+
outputs=[ref_textbox, target_textbox],
|
| 232 |
+
)
|
| 233 |
+
|
| 234 |
+
|
| 235 |
+
if __name__ == "__main__":
|
| 236 |
+
demo.launch(server_name="0.0.0.0", server_port=7860, theme=gr.themes.Soft())
|